Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0452900 | Msa0928820 | 0.801544 | 8.566231e-49 | -8.615850e-47 |
| Msa0928820 | Msa1044830 | 0.802941 | 4.417117e-49 | -8.615850e-47 |
| Msa0928820 | Msa1060840 | 0.809889 | 1.513523e-50 | -8.615850e-47 |
| Msa0928820 | Msa1112300 | 0.800752 | 1.243623e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 26 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTTCTTGAAGAAGAAAA+AGG | 0.247818 | 6_2:-75007985 | Msa0928820:CDS |
| TCTTGTTCAAATAAGCTTAG+AGG | 0.281060 | 6_2:-75007748 | Msa0928820:three_prime_UTR |
| GATAATGTATGGGTTGAGTA+TGG | 0.304197 | 6_2:+75007788 | None:intergenic |
| TTGCATGTTTGACATATTCA+TGG | 0.312722 | 6_2:+75007820 | None:intergenic |
| AAGTGGGATGTCGACGAAAA+TGG | 0.327385 | 6_2:+75009832 | None:intergenic |
| TCTGCACAAATGATAATGTA+TGG | 0.389325 | 6_2:+75007777 | None:intergenic |
| ACTGTGTTTGTACGAACAAT+GGG | 0.405702 | 6_2:-75007930 | Msa0928820:CDS |
| GATTGTGAGGCGACGGTGGC+TGG | 0.437589 | 6_2:+75009796 | None:intergenic |
| GAAGGTGGATAAAACGGAAC+AGG | 0.446506 | 6_2:+75009877 | None:intergenic |
| TCCGACGAAGGTGGATAAAA+CGG | 0.503144 | 6_2:+75009871 | None:intergenic |
| TGTACGAACAATGGGGATGA+AGG | 0.551846 | 6_2:-75007922 | Msa0928820:CDS |
| TACTGTGTTTGTACGAACAA+TGG | 0.577699 | 6_2:-75007931 | Msa0928820:CDS |
| TGAAATCTTCTCTCCGACGA+AGG | 0.587439 | 6_2:+75009859 | None:intergenic |
| CTGGAATGAGACAGATCAAG+TGG | 0.597015 | 6_2:+75009815 | None:intergenic |
| AATCTTCTCTCCGACGAAGG+TGG | 0.603824 | 6_2:+75009862 | None:intergenic |
| ATAATGTATGGGTTGAGTAT+GGG | 0.612016 | 6_2:+75007789 | None:intergenic |
| GTACGAACAATGGGGATGAA+GGG | 0.623308 | 6_2:-75007921 | Msa0928820:CDS |
| CAGTGATTGTGAGGCGACGG+TGG | 0.624540 | 6_2:+75009792 | None:intergenic |
| ATGACGCAACAGTGATTGTG+AGG | 0.630200 | 6_2:+75009783 | None:intergenic |
| CTGCACAAATGATAATGTAT+GGG | 0.630427 | 6_2:+75007778 | None:intergenic |
| CAACAGTGATTGTGAGGCGA+CGG | 0.639124 | 6_2:+75009789 | None:intergenic |
| AAGGTGGATAAAACGGAACA+GGG | 0.666087 | 6_2:+75009878 | None:intergenic |
| TGGGATGTCGACGAAAATGG+TGG | 0.676749 | 6_2:+75009835 | None:intergenic |
| TGGAATGAGACAGATCAAGT+GGG | 0.736501 | 6_2:+75009816 | None:intergenic |
| CTGTGTTTGTACGAACAATG+GGG | 0.773596 | 6_2:-75007929 | Msa0928820:CDS |
| AGGTGGATAAAACGGAACAG+GGG | 0.779375 | 6_2:+75009879 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAATTTGTTTGGATAT+TGG | - | chr6_2:75008172-75008191 | Msa0928820:intron | 15.0% |
| !! | ATGTTGTTAATTATTTCAAA+AGG | - | chr6_2:75008316-75008335 | Msa0928820:intron | 15.0% |
| !! | TGTTGTTAATTATTTCAAAA+GGG | - | chr6_2:75008317-75008336 | Msa0928820:intron | 15.0% |
| !!! | AAAATTGTTTTTCAATATCT+TGG | - | chr6_2:75008551-75008570 | Msa0928820:intron | 15.0% |
| !! | AAAATTTATACATGTGATAT+TGG | - | chr6_2:75008860-75008879 | Msa0928820:intron | 15.0% |
| !!! | TTTTAAATTTGTTTGGATAT+TGG | - | chr6_2:75008172-75008191 | Msa0928820:intron | 15.0% |
| !! | ATGTTGTTAATTATTTCAAA+AGG | - | chr6_2:75008316-75008335 | Msa0928820:intron | 15.0% |
| !! | TGTTGTTAATTATTTCAAAA+GGG | - | chr6_2:75008317-75008336 | Msa0928820:intron | 15.0% |
| !!! | AAAATTGTTTTTCAATATCT+TGG | - | chr6_2:75008551-75008570 | Msa0928820:intron | 15.0% |
| !! | AAAATTTATACATGTGATAT+TGG | - | chr6_2:75008860-75008879 | Msa0928820:intron | 15.0% |
| !! | TTTGGATAACAAAATTAGTT+TGG | - | chr6_2:75008081-75008100 | Msa0928820:intron | 20.0% |
| !!! | AACAAAATTAGTTTGGATAT+TGG | - | chr6_2:75008088-75008107 | Msa0928820:intron | 20.0% |
| !!! | CTCTGATTTTTAAATTTGTT+TGG | - | chr6_2:75008165-75008184 | Msa0928820:intron | 20.0% |
| !! | CAAATTTCAAAATCAAAATG+TGG | + | chr6_2:75008249-75008268 | None:intergenic | 20.0% |
| !! | ATGTAATAATAAGTCAAAAG+TGG | - | chr6_2:75008918-75008937 | Msa0928820:intron | 20.0% |
| !! | TGTAATAATAAGTCAAAAGT+GGG | - | chr6_2:75008919-75008938 | Msa0928820:intron | 20.0% |
| !!! | ATGTTTTTGACATGAAAATA+TGG | - | chr6_2:75008952-75008971 | Msa0928820:intron | 20.0% |
| !!! | GTTTATTGTTATTTCCTAAA+CGG | - | chr6_2:75009243-75009262 | Msa0928820:intron | 20.0% |
| !! | GCTAGCATATTAAAATATAA+AGG | - | chr6_2:75009419-75009438 | Msa0928820:intron | 20.0% |
| !! | GCATATTAAAATATAAAGGA+TGG | - | chr6_2:75009423-75009442 | Msa0928820:intron | 20.0% |
| !! | AAATTTCTTGAAGAAGAAAA+AGG | - | chr6_2:75009639-75009658 | Msa0928820:intron | 20.0% |
| !! | AATTTCTTGAAGAAGAAAAA+GGG | - | chr6_2:75009640-75009659 | Msa0928820:intron | 20.0% |
| !! | TTTGGATAACAAAATTAGTT+TGG | - | chr6_2:75008081-75008100 | Msa0928820:intron | 20.0% |
| !!! | AACAAAATTAGTTTGGATAT+TGG | - | chr6_2:75008088-75008107 | Msa0928820:intron | 20.0% |
| !!! | CTCTGATTTTTAAATTTGTT+TGG | - | chr6_2:75008165-75008184 | Msa0928820:intron | 20.0% |
| !! | CAAATTTCAAAATCAAAATG+TGG | + | chr6_2:75008249-75008268 | None:intergenic | 20.0% |
| !! | ATGTAATAATAAGTCAAAAG+TGG | - | chr6_2:75008918-75008937 | Msa0928820:intron | 20.0% |
| !! | TGTAATAATAAGTCAAAAGT+GGG | - | chr6_2:75008919-75008938 | Msa0928820:intron | 20.0% |
| !!! | ATGTTTTTGACATGAAAATA+TGG | - | chr6_2:75008952-75008971 | Msa0928820:intron | 20.0% |
| !!! | GTTTATTGTTATTTCCTAAA+CGG | - | chr6_2:75009243-75009262 | Msa0928820:intron | 20.0% |
| !! | GCTAGCATATTAAAATATAA+AGG | - | chr6_2:75009419-75009438 | Msa0928820:intron | 20.0% |
| !! | GCATATTAAAATATAAAGGA+TGG | - | chr6_2:75009423-75009442 | Msa0928820:intron | 20.0% |
| !! | AAATTTCTTGAAGAAGAAAA+AGG | - | chr6_2:75009639-75009658 | Msa0928820:intron | 20.0% |
| !! | AATTTCTTGAAGAAGAAAAA+GGG | - | chr6_2:75009640-75009659 | Msa0928820:intron | 20.0% |
| ! | AAATCGAATATCTTTGTTGA+AGG | - | chr6_2:75007961-75007980 | Msa0928820:CDS | 25.0% |
| !! | TGAAGTTTGTTCTCAAAAAA+TGG | - | chr6_2:75008050-75008069 | Msa0928820:intron | 25.0% |
| !! | GAAGTTTGTTCTCAAAAAAT+GGG | - | chr6_2:75008051-75008070 | Msa0928820:intron | 25.0% |
| ! | AAACATGGTTATGTGATTAT+AGG | - | chr6_2:75008196-75008215 | Msa0928820:intron | 25.0% |
| ! | AGAAAATTTCAGTATTTACC+AGG | + | chr6_2:75008293-75008312 | None:intergenic | 25.0% |
| ! | TGCTTAACTATCTTAATCAA+TGG | - | chr6_2:75008484-75008503 | Msa0928820:intron | 25.0% |
| !!! | TTTTTCAATATCTTGGTTGA+GGG | - | chr6_2:75008558-75008577 | Msa0928820:intron | 25.0% |
| ! | CATTTAGTGTTAACCAATTT+CGG | + | chr6_2:75008623-75008642 | None:intergenic | 25.0% |
| ! | GTTAACACTAAATGTAGTTT+AGG | - | chr6_2:75008629-75008648 | Msa0928820:intron | 25.0% |
| !!! | TAGCTTTGAATTAGTTATGA+TGG | - | chr6_2:75008678-75008697 | Msa0928820:intron | 25.0% |
| !!! | TTAGTTATGATGGATTTAGA+TGG | - | chr6_2:75008688-75008707 | Msa0928820:intron | 25.0% |
| ! | AATCCAATCTATGTATGATT+AGG | - | chr6_2:75008828-75008847 | Msa0928820:intron | 25.0% |
| ! | TATCCTAATCATACATAGAT+TGG | + | chr6_2:75008834-75008853 | None:intergenic | 25.0% |
| ! | ATTTATACATGTGATATTGG+AGG | - | chr6_2:75008863-75008882 | Msa0928820:intron | 25.0% |
| ! | TTTATACATGTGATATTGGA+GGG | - | chr6_2:75008864-75008883 | Msa0928820:intron | 25.0% |
| ! | TGAAAATATGGTTGAAATAG+AGG | - | chr6_2:75008964-75008983 | Msa0928820:intron | 25.0% |
| ! | TTATGTGTATAAACTAGTTG+AGG | - | chr6_2:75008996-75009015 | Msa0928820:intron | 25.0% |
| !!! | TCAATGACTTGTAGAAATTT+TGG | - | chr6_2:75009193-75009212 | Msa0928820:intron | 25.0% |
| !! | AAATTTTGGACAAATGCATA+AGG | - | chr6_2:75009207-75009226 | Msa0928820:intron | 25.0% |
| !!! | TAAAGGATGGATATTTTTGT+AGG | - | chr6_2:75009436-75009455 | Msa0928820:intron | 25.0% |
| !! | ATTGATGTGATCTATTTTCT+AGG | - | chr6_2:75009753-75009772 | Msa0928820:intron | 25.0% |
| ! | AAATCGAATATCTTTGTTGA+AGG | - | chr6_2:75007961-75007980 | Msa0928820:CDS | 25.0% |
| !! | TGAAGTTTGTTCTCAAAAAA+TGG | - | chr6_2:75008050-75008069 | Msa0928820:intron | 25.0% |
| !! | GAAGTTTGTTCTCAAAAAAT+GGG | - | chr6_2:75008051-75008070 | Msa0928820:intron | 25.0% |
| ! | AAACATGGTTATGTGATTAT+AGG | - | chr6_2:75008196-75008215 | Msa0928820:intron | 25.0% |
| ! | AGAAAATTTCAGTATTTACC+AGG | + | chr6_2:75008293-75008312 | None:intergenic | 25.0% |
| ! | TGCTTAACTATCTTAATCAA+TGG | - | chr6_2:75008484-75008503 | Msa0928820:intron | 25.0% |
| !!! | TTTTTCAATATCTTGGTTGA+GGG | - | chr6_2:75008558-75008577 | Msa0928820:intron | 25.0% |
| ! | CATTTAGTGTTAACCAATTT+CGG | + | chr6_2:75008623-75008642 | None:intergenic | 25.0% |
| ! | GTTAACACTAAATGTAGTTT+AGG | - | chr6_2:75008629-75008648 | Msa0928820:intron | 25.0% |
| !!! | TAGCTTTGAATTAGTTATGA+TGG | - | chr6_2:75008678-75008697 | Msa0928820:intron | 25.0% |
| !!! | TTAGTTATGATGGATTTAGA+TGG | - | chr6_2:75008688-75008707 | Msa0928820:intron | 25.0% |
| ! | AATCCAATCTATGTATGATT+AGG | - | chr6_2:75008828-75008847 | Msa0928820:intron | 25.0% |
| ! | TATCCTAATCATACATAGAT+TGG | + | chr6_2:75008834-75008853 | None:intergenic | 25.0% |
| ! | ATTTATACATGTGATATTGG+AGG | - | chr6_2:75008863-75008882 | Msa0928820:intron | 25.0% |
| ! | TTTATACATGTGATATTGGA+GGG | - | chr6_2:75008864-75008883 | Msa0928820:intron | 25.0% |
| ! | TGAAAATATGGTTGAAATAG+AGG | - | chr6_2:75008964-75008983 | Msa0928820:intron | 25.0% |
| ! | TTATGTGTATAAACTAGTTG+AGG | - | chr6_2:75008996-75009015 | Msa0928820:intron | 25.0% |
| !!! | TCAATGACTTGTAGAAATTT+TGG | - | chr6_2:75009193-75009212 | Msa0928820:intron | 25.0% |
| !! | AAATTTTGGACAAATGCATA+AGG | - | chr6_2:75009207-75009226 | Msa0928820:intron | 25.0% |
| !!! | TAAAGGATGGATATTTTTGT+AGG | - | chr6_2:75009436-75009455 | Msa0928820:intron | 25.0% |
| !! | ATTGATGTGATCTATTTTCT+AGG | - | chr6_2:75009753-75009772 | Msa0928820:intron | 25.0% |
| TACAAAGTCTCAACACAAAA+TGG | + | chr6_2:75008012-75008031 | None:intergenic | 30.0% | |
| TGTGTTGAGACTTTGTATTT+AGG | - | chr6_2:75008015-75008034 | Msa0928820:intron | 30.0% | |
| GTGTTGAGACTTTGTATTTA+GGG | - | chr6_2:75008016-75008035 | Msa0928820:intron | 30.0% | |
| CAAAAAATGGGCAAATACTT+TGG | - | chr6_2:75008063-75008082 | Msa0928820:intron | 30.0% | |
| AGTTTGGATATTGGTAAACA+TGG | - | chr6_2:75008097-75008116 | Msa0928820:intron | 30.0% | |
| TGTTTGGATATTGGTAAACA+TGG | - | chr6_2:75008181-75008200 | Msa0928820:intron | 30.0% | |
| TATTTACCAGGTTTGGATTA+AGG | + | chr6_2:75008281-75008300 | None:intergenic | 30.0% | |
| ATTTCAGTATTTACCAGGTT+TGG | + | chr6_2:75008288-75008307 | None:intergenic | 30.0% | |
| AGAGAACTGATGTTGAAATT+CGG | - | chr6_2:75008346-75008365 | Msa0928820:intron | 30.0% | |
| !! | GTTTTTCAATATCTTGGTTG+AGG | - | chr6_2:75008557-75008576 | Msa0928820:intron | 30.0% |
| TGAAAATTGATGTCCGAAAT+TGG | - | chr6_2:75008607-75008626 | Msa0928820:intron | 30.0% | |
| GCAATATCAATATCATCAAG+TGG | + | chr6_2:75008797-75008816 | None:intergenic | 30.0% | |
| ! | CTTGATGATATTGATATTGC+TGG | - | chr6_2:75008797-75008816 | Msa0928820:intron | 30.0% |
| ! | TATAGTTTTCTTACATGTGC+AGG | - | chr6_2:75009020-75009039 | Msa0928820:intron | 30.0% |
| TGTTGACAAATGAACTGAAA+TGG | - | chr6_2:75009327-75009346 | Msa0928820:intron | 30.0% | |
| CATATACAAGATTGTTTGTG+TGG | - | chr6_2:75009390-75009409 | Msa0928820:intron | 30.0% | |
| TTGCATGTTTGACATATTCA+TGG | + | chr6_2:75009807-75009826 | None:intergenic | 30.0% | |
| ! | ATAATGTATGGGTTGAGTAT+GGG | + | chr6_2:75009838-75009857 | None:intergenic | 30.0% |
| ! | CTGCACAAATGATAATGTAT+GGG | + | chr6_2:75009849-75009868 | None:intergenic | 30.0% |
| ! | TCTGCACAAATGATAATGTA+TGG | + | chr6_2:75009850-75009869 | None:intergenic | 30.0% |
| TCTTGTTCAAATAAGCTTAG+AGG | - | chr6_2:75009876-75009895 | Msa0928820:CDS | 30.0% | |
| TACAAAGTCTCAACACAAAA+TGG | + | chr6_2:75008012-75008031 | None:intergenic | 30.0% | |
| TGTGTTGAGACTTTGTATTT+AGG | - | chr6_2:75008015-75008034 | Msa0928820:intron | 30.0% | |
| GTGTTGAGACTTTGTATTTA+GGG | - | chr6_2:75008016-75008035 | Msa0928820:intron | 30.0% | |
| CAAAAAATGGGCAAATACTT+TGG | - | chr6_2:75008063-75008082 | Msa0928820:intron | 30.0% | |
| AGTTTGGATATTGGTAAACA+TGG | - | chr6_2:75008097-75008116 | Msa0928820:intron | 30.0% | |
| TGTTTGGATATTGGTAAACA+TGG | - | chr6_2:75008181-75008200 | Msa0928820:intron | 30.0% | |
| TATTTACCAGGTTTGGATTA+AGG | + | chr6_2:75008281-75008300 | None:intergenic | 30.0% | |
| ATTTCAGTATTTACCAGGTT+TGG | + | chr6_2:75008288-75008307 | None:intergenic | 30.0% | |
| AGAGAACTGATGTTGAAATT+CGG | - | chr6_2:75008346-75008365 | Msa0928820:intron | 30.0% | |
| !! | GTTTTTCAATATCTTGGTTG+AGG | - | chr6_2:75008557-75008576 | Msa0928820:intron | 30.0% |
| TGAAAATTGATGTCCGAAAT+TGG | - | chr6_2:75008607-75008626 | Msa0928820:intron | 30.0% | |
| GCAATATCAATATCATCAAG+TGG | + | chr6_2:75008797-75008816 | None:intergenic | 30.0% | |
| ! | CTTGATGATATTGATATTGC+TGG | - | chr6_2:75008797-75008816 | Msa0928820:intron | 30.0% |
| ! | TATAGTTTTCTTACATGTGC+AGG | - | chr6_2:75009020-75009039 | Msa0928820:intron | 30.0% |
| TGTTGACAAATGAACTGAAA+TGG | - | chr6_2:75009327-75009346 | Msa0928820:intron | 30.0% | |
| CATATACAAGATTGTTTGTG+TGG | - | chr6_2:75009390-75009409 | Msa0928820:intron | 30.0% | |
| TTGCATGTTTGACATATTCA+TGG | + | chr6_2:75009807-75009826 | None:intergenic | 30.0% | |
| ! | ATAATGTATGGGTTGAGTAT+GGG | + | chr6_2:75009838-75009857 | None:intergenic | 30.0% |
| ! | CTGCACAAATGATAATGTAT+GGG | + | chr6_2:75009849-75009868 | None:intergenic | 30.0% |
| ! | TCTGCACAAATGATAATGTA+TGG | + | chr6_2:75009850-75009869 | None:intergenic | 30.0% |
| TCTTGTTCAAATAAGCTTAG+AGG | - | chr6_2:75009876-75009895 | Msa0928820:CDS | 30.0% | |
| ! | GGAATGTTCTCTCTTTTCTA+CGG | - | chr6_2:75007686-75007705 | Msa0928820:three_prime_UTR | 35.0% |
| TGTGACTAAGATGTTTCCAA+CGG | + | chr6_2:75007908-75007927 | None:intergenic | 35.0% | |
| CGAAAAGATTGAGTAACTGA+CGG | + | chr6_2:75007937-75007956 | None:intergenic | 35.0% | |
| ! | CAGTTACTCAATCTTTTCGT+CGG | - | chr6_2:75007938-75007957 | Msa0928820:CDS | 35.0% |
| GAATATCTTTGTTGAAGGTG+AGG | - | chr6_2:75007966-75007985 | Msa0928820:CDS | 35.0% | |
| TTAAAGCCTTAATCCAAACC+TGG | - | chr6_2:75008272-75008291 | Msa0928820:intron | 35.0% | |
| !! | TGTTGCTGATTCTTTGTTGA+AGG | - | chr6_2:75008517-75008536 | Msa0928820:intron | 35.0% |
| TCTTTGTTGAAGGTGAACTT+TGG | - | chr6_2:75008527-75008546 | Msa0928820:intron | 35.0% | |
| ! | GGTTGAGGGTTTTACATTTT+TGG | - | chr6_2:75008572-75008591 | Msa0928820:intron | 35.0% |
| ATTTGTGTCACACATTAGTG+CGG | - | chr6_2:75008769-75008788 | Msa0928820:intron | 35.0% | |
| ! | TGTGCAGGTACAATTTTCAT+TGG | - | chr6_2:75009035-75009054 | Msa0928820:intron | 35.0% |
| ! | CAGGTACAATTTTCATTGGT+GGG | - | chr6_2:75009039-75009058 | Msa0928820:intron | 35.0% |
| ! | AGGTACAATTTTCATTGGTG+GGG | - | chr6_2:75009040-75009059 | Msa0928820:intron | 35.0% |
| AGAGAGCAAATAAACCGTTT+AGG | + | chr6_2:75009260-75009279 | None:intergenic | 35.0% | |
| TTTGAAAGATTGACGATGCA+AGG | - | chr6_2:75009291-75009310 | Msa0928820:intron | 35.0% | |
| TCAGTTCATTTGTCAACAAG+AGG | + | chr6_2:75009325-75009344 | None:intergenic | 35.0% | |
| AGAATACTGAGTTCCTAAGA+GGG | + | chr6_2:75009472-75009491 | None:intergenic | 35.0% | |
| AAGAATACTGAGTTCCTAAG+AGG | + | chr6_2:75009473-75009492 | None:intergenic | 35.0% | |
| AGGGATACACAAACAAATCA+TGG | + | chr6_2:75009505-75009524 | None:intergenic | 35.0% | |
| TACTGTGTTTGTACGAACAA+TGG | - | chr6_2:75009693-75009712 | Msa0928820:intron | 35.0% | |
| ACTGTGTTTGTACGAACAAT+GGG | - | chr6_2:75009694-75009713 | Msa0928820:intron | 35.0% | |
| ! | GATAATGTATGGGTTGAGTA+TGG | + | chr6_2:75009839-75009858 | None:intergenic | 35.0% |
| ! | GGAATGTTCTCTCTTTTCTA+CGG | - | chr6_2:75007686-75007705 | Msa0928820:three_prime_UTR | 35.0% |
| TGTGACTAAGATGTTTCCAA+CGG | + | chr6_2:75007908-75007927 | None:intergenic | 35.0% | |
| CGAAAAGATTGAGTAACTGA+CGG | + | chr6_2:75007937-75007956 | None:intergenic | 35.0% | |
| ! | CAGTTACTCAATCTTTTCGT+CGG | - | chr6_2:75007938-75007957 | Msa0928820:CDS | 35.0% |
| GAATATCTTTGTTGAAGGTG+AGG | - | chr6_2:75007966-75007985 | Msa0928820:CDS | 35.0% | |
| TTAAAGCCTTAATCCAAACC+TGG | - | chr6_2:75008272-75008291 | Msa0928820:intron | 35.0% | |
| !! | TGTTGCTGATTCTTTGTTGA+AGG | - | chr6_2:75008517-75008536 | Msa0928820:intron | 35.0% |
| TCTTTGTTGAAGGTGAACTT+TGG | - | chr6_2:75008527-75008546 | Msa0928820:intron | 35.0% | |
| ! | GGTTGAGGGTTTTACATTTT+TGG | - | chr6_2:75008572-75008591 | Msa0928820:intron | 35.0% |
| ATTTGTGTCACACATTAGTG+CGG | - | chr6_2:75008769-75008788 | Msa0928820:intron | 35.0% | |
| ! | TGTGCAGGTACAATTTTCAT+TGG | - | chr6_2:75009035-75009054 | Msa0928820:intron | 35.0% |
| ! | CAGGTACAATTTTCATTGGT+GGG | - | chr6_2:75009039-75009058 | Msa0928820:intron | 35.0% |
| ! | AGGTACAATTTTCATTGGTG+GGG | - | chr6_2:75009040-75009059 | Msa0928820:intron | 35.0% |
| AGAGAGCAAATAAACCGTTT+AGG | + | chr6_2:75009260-75009279 | None:intergenic | 35.0% | |
| TTTGAAAGATTGACGATGCA+AGG | - | chr6_2:75009291-75009310 | Msa0928820:intron | 35.0% | |
| TCAGTTCATTTGTCAACAAG+AGG | + | chr6_2:75009325-75009344 | None:intergenic | 35.0% | |
| AGAATACTGAGTTCCTAAGA+GGG | + | chr6_2:75009472-75009491 | None:intergenic | 35.0% | |
| AAGAATACTGAGTTCCTAAG+AGG | + | chr6_2:75009473-75009492 | None:intergenic | 35.0% | |
| AGGGATACACAAACAAATCA+TGG | + | chr6_2:75009505-75009524 | None:intergenic | 35.0% | |
| TACTGTGTTTGTACGAACAA+TGG | - | chr6_2:75009693-75009712 | Msa0928820:intron | 35.0% | |
| ACTGTGTTTGTACGAACAAT+GGG | - | chr6_2:75009694-75009713 | Msa0928820:intron | 35.0% | |
| ! | GATAATGTATGGGTTGAGTA+TGG | + | chr6_2:75009839-75009858 | None:intergenic | 35.0% |
| AAGGTGGATAAAACGGAACA+GGG | + | chr6_2:75007749-75007768 | None:intergenic | 40.0% | |
| TGGAATGAGACAGATCAAGT+GGG | + | chr6_2:75007811-75007830 | None:intergenic | 40.0% | |
| AGATTCAGATTCATCACACC+TGG | + | chr6_2:75008383-75008402 | None:intergenic | 40.0% | |
| ! | GCAGGTACAATTTTCATTGG+TGG | - | chr6_2:75009038-75009057 | Msa0928820:intron | 40.0% |
| AAGATTGTTTGTGTGGTGCT+TGG | - | chr6_2:75009397-75009416 | Msa0928820:intron | 40.0% | |
| AGGATTTGTGTATCCCTCTT+AGG | - | chr6_2:75009456-75009475 | Msa0928820:intron | 40.0% | |
| !! | TCCATGGCATTGTTCTAAGA+GGG | + | chr6_2:75009524-75009543 | None:intergenic | 40.0% |
| ! | ATCCATGGCATTGTTCTAAG+AGG | + | chr6_2:75009525-75009544 | None:intergenic | 40.0% |
| CTTAGAACAATGCCATGGAT+TGG | - | chr6_2:75009525-75009544 | Msa0928820:intron | 40.0% | |
| CACACAAAATCACCAATCCA+TGG | + | chr6_2:75009540-75009559 | None:intergenic | 40.0% | |
| CTGTGTTTGTACGAACAATG+GGG | - | chr6_2:75009695-75009714 | Msa0928820:intron | 40.0% | |
| AAGGTGGATAAAACGGAACA+GGG | + | chr6_2:75007749-75007768 | None:intergenic | 40.0% | |
| TGGAATGAGACAGATCAAGT+GGG | + | chr6_2:75007811-75007830 | None:intergenic | 40.0% | |
| AGATTCAGATTCATCACACC+TGG | + | chr6_2:75008383-75008402 | None:intergenic | 40.0% | |
| ! | GCAGGTACAATTTTCATTGG+TGG | - | chr6_2:75009038-75009057 | Msa0928820:intron | 40.0% |
| AAGATTGTTTGTGTGGTGCT+TGG | - | chr6_2:75009397-75009416 | Msa0928820:intron | 40.0% | |
| AGGATTTGTGTATCCCTCTT+AGG | - | chr6_2:75009456-75009475 | Msa0928820:intron | 40.0% | |
| !! | TCCATGGCATTGTTCTAAGA+GGG | + | chr6_2:75009524-75009543 | None:intergenic | 40.0% |
| ! | ATCCATGGCATTGTTCTAAG+AGG | + | chr6_2:75009525-75009544 | None:intergenic | 40.0% |
| CTTAGAACAATGCCATGGAT+TGG | - | chr6_2:75009525-75009544 | Msa0928820:intron | 40.0% | |
| CACACAAAATCACCAATCCA+TGG | + | chr6_2:75009540-75009559 | None:intergenic | 40.0% | |
| CTGTGTTTGTACGAACAATG+GGG | - | chr6_2:75009695-75009714 | Msa0928820:intron | 40.0% | |
| AGGTGGATAAAACGGAACAG+GGG | + | chr6_2:75007748-75007767 | None:intergenic | 45.0% | |
| GAAGGTGGATAAAACGGAAC+AGG | + | chr6_2:75007750-75007769 | None:intergenic | 45.0% | |
| ! | TCCGTTTTATCCACCTTCGT+CGG | - | chr6_2:75007752-75007771 | Msa0928820:three_prime_UTR | 45.0% |
| TCCGACGAAGGTGGATAAAA+CGG | + | chr6_2:75007756-75007775 | None:intergenic | 45.0% | |
| TGAAATCTTCTCTCCGACGA+AGG | + | chr6_2:75007768-75007787 | None:intergenic | 45.0% | |
| AAGTGGGATGTCGACGAAAA+TGG | + | chr6_2:75007795-75007814 | None:intergenic | 45.0% | |
| CTGGAATGAGACAGATCAAG+TGG | + | chr6_2:75007812-75007831 | None:intergenic | 45.0% | |
| ATGACGCAACAGTGATTGTG+AGG | + | chr6_2:75007844-75007863 | None:intergenic | 45.0% | |
| TTCAGATTCATCACACCTGG+CGG | + | chr6_2:75008380-75008399 | None:intergenic | 45.0% | |
| !!! | TTTTCATTGGTGGGGTGTTG+TGG | - | chr6_2:75009048-75009067 | Msa0928820:intron | 45.0% |
| !! | TTTCATTGGTGGGGTGTTGT+GGG | - | chr6_2:75009049-75009068 | Msa0928820:intron | 45.0% |
| TGTCACAGCTGATGACATCT+TGG | - | chr6_2:75009150-75009169 | Msa0928820:intron | 45.0% | |
| GTCACAGCTGATGACATCTT+GGG | - | chr6_2:75009151-75009170 | Msa0928820:intron | 45.0% | |
| TCCCTCTTAGAACAATGCCA+TGG | - | chr6_2:75009520-75009539 | Msa0928820:intron | 45.0% | |
| TGCAATGACAAACCAGCATG+TGG | - | chr6_2:75009558-75009577 | Msa0928820:intron | 45.0% | |
| ACAAACCAGCATGTGGACAA+TGG | - | chr6_2:75009565-75009584 | Msa0928820:intron | 45.0% | |
| TGTACGAACAATGGGGATGA+AGG | - | chr6_2:75009702-75009721 | Msa0928820:intron | 45.0% | |
| GTACGAACAATGGGGATGAA+GGG | - | chr6_2:75009703-75009722 | Msa0928820:intron | 45.0% | |
| AGGTGGATAAAACGGAACAG+GGG | + | chr6_2:75007748-75007767 | None:intergenic | 45.0% | |
| GAAGGTGGATAAAACGGAAC+AGG | + | chr6_2:75007750-75007769 | None:intergenic | 45.0% | |
| ! | TCCGTTTTATCCACCTTCGT+CGG | - | chr6_2:75007752-75007771 | Msa0928820:three_prime_UTR | 45.0% |
| TCCGACGAAGGTGGATAAAA+CGG | + | chr6_2:75007756-75007775 | None:intergenic | 45.0% | |
| TGAAATCTTCTCTCCGACGA+AGG | + | chr6_2:75007768-75007787 | None:intergenic | 45.0% | |
| AAGTGGGATGTCGACGAAAA+TGG | + | chr6_2:75007795-75007814 | None:intergenic | 45.0% | |
| CTGGAATGAGACAGATCAAG+TGG | + | chr6_2:75007812-75007831 | None:intergenic | 45.0% | |
| ATGACGCAACAGTGATTGTG+AGG | + | chr6_2:75007844-75007863 | None:intergenic | 45.0% | |
| TTCAGATTCATCACACCTGG+CGG | + | chr6_2:75008380-75008399 | None:intergenic | 45.0% | |
| !!! | TTTTCATTGGTGGGGTGTTG+TGG | - | chr6_2:75009048-75009067 | Msa0928820:intron | 45.0% |
| !! | TTTCATTGGTGGGGTGTTGT+GGG | - | chr6_2:75009049-75009068 | Msa0928820:intron | 45.0% |
| TGTCACAGCTGATGACATCT+TGG | - | chr6_2:75009150-75009169 | Msa0928820:intron | 45.0% | |
| GTCACAGCTGATGACATCTT+GGG | - | chr6_2:75009151-75009170 | Msa0928820:intron | 45.0% | |
| TCCCTCTTAGAACAATGCCA+TGG | - | chr6_2:75009520-75009539 | Msa0928820:intron | 45.0% | |
| TGCAATGACAAACCAGCATG+TGG | - | chr6_2:75009558-75009577 | Msa0928820:intron | 45.0% | |
| ACAAACCAGCATGTGGACAA+TGG | - | chr6_2:75009565-75009584 | Msa0928820:intron | 45.0% | |
| TGTACGAACAATGGGGATGA+AGG | - | chr6_2:75009702-75009721 | Msa0928820:intron | 45.0% | |
| GTACGAACAATGGGGATGAA+GGG | - | chr6_2:75009703-75009722 | Msa0928820:intron | 45.0% | |
| AATCTTCTCTCCGACGAAGG+TGG | + | chr6_2:75007765-75007784 | None:intergenic | 50.0% | |
| TGGGATGTCGACGAAAATGG+TGG | + | chr6_2:75007792-75007811 | None:intergenic | 50.0% | |
| CAACAGTGATTGTGAGGCGA+CGG | + | chr6_2:75007838-75007857 | None:intergenic | 50.0% | |
| GTTTCCAACGGTGAGAGTGA+GGG | + | chr6_2:75007896-75007915 | None:intergenic | 50.0% | |
| TGTTTCCAACGGTGAGAGTG+AGG | + | chr6_2:75007897-75007916 | None:intergenic | 50.0% | |
| ! | GGGTGTTGTGGGTTGCAATT+AGG | - | chr6_2:75009060-75009079 | Msa0928820:intron | 50.0% |
| CATTGCCATTGTCCACATGC+TGG | + | chr6_2:75009573-75009592 | None:intergenic | 50.0% | |
| AATCTTCTCTCCGACGAAGG+TGG | + | chr6_2:75007765-75007784 | None:intergenic | 50.0% | |
| TGGGATGTCGACGAAAATGG+TGG | + | chr6_2:75007792-75007811 | None:intergenic | 50.0% | |
| CAACAGTGATTGTGAGGCGA+CGG | + | chr6_2:75007838-75007857 | None:intergenic | 50.0% | |
| GTTTCCAACGGTGAGAGTGA+GGG | + | chr6_2:75007896-75007915 | None:intergenic | 50.0% | |
| TGTTTCCAACGGTGAGAGTG+AGG | + | chr6_2:75007897-75007916 | None:intergenic | 50.0% | |
| ! | GGGTGTTGTGGGTTGCAATT+AGG | - | chr6_2:75009060-75009079 | Msa0928820:intron | 50.0% |
| CATTGCCATTGTCCACATGC+TGG | + | chr6_2:75009573-75009592 | None:intergenic | 50.0% | |
| GTGAGAGTGAGGGATCAAGG+AGG | + | chr6_2:75007886-75007905 | None:intergenic | 55.0% | |
| ACGGTGAGAGTGAGGGATCA+AGG | + | chr6_2:75007889-75007908 | None:intergenic | 55.0% | |
| TGATCCCTCACTCTCACCGT+TGG | - | chr6_2:75007889-75007908 | Msa0928820:three_prime_UTR | 55.0% | |
| ATTCATCACACCTGGCGGAG+GGG | + | chr6_2:75008375-75008394 | None:intergenic | 55.0% | |
| GATTCATCACACCTGGCGGA+GGG | + | chr6_2:75008376-75008395 | None:intergenic | 55.0% | |
| AGATTCATCACACCTGGCGG+AGG | + | chr6_2:75008377-75008396 | None:intergenic | 55.0% | |
| CAACGATGAGAGTCACGCGA+CGG | + | chr6_2:75008433-75008452 | None:intergenic | 55.0% | |
| GTGAGAGTGAGGGATCAAGG+AGG | + | chr6_2:75007886-75007905 | None:intergenic | 55.0% | |
| ACGGTGAGAGTGAGGGATCA+AGG | + | chr6_2:75007889-75007908 | None:intergenic | 55.0% | |
| TGATCCCTCACTCTCACCGT+TGG | - | chr6_2:75007889-75007908 | Msa0928820:three_prime_UTR | 55.0% | |
| ATTCATCACACCTGGCGGAG+GGG | + | chr6_2:75008375-75008394 | None:intergenic | 55.0% | |
| GATTCATCACACCTGGCGGA+GGG | + | chr6_2:75008376-75008395 | None:intergenic | 55.0% | |
| AGATTCATCACACCTGGCGG+AGG | + | chr6_2:75008377-75008396 | None:intergenic | 55.0% | |
| CAACGATGAGAGTCACGCGA+CGG | + | chr6_2:75008433-75008452 | None:intergenic | 55.0% | |
| CAGTGATTGTGAGGCGACGG+TGG | + | chr6_2:75007835-75007854 | None:intergenic | 60.0% | |
| TTCATCACACCTGGCGGAGG+GGG | + | chr6_2:75008374-75008393 | None:intergenic | 60.0% | |
| TCGTTACAGCCTGCGTGCCT+TGG | - | chr6_2:75008402-75008421 | Msa0928820:intron | 60.0% | |
| CGTCGCGTGACTCTCATCGT+TGG | - | chr6_2:75008431-75008450 | Msa0928820:intron | 60.0% | |
| CAGTGATTGTGAGGCGACGG+TGG | + | chr6_2:75007835-75007854 | None:intergenic | 60.0% | |
| TTCATCACACCTGGCGGAGG+GGG | + | chr6_2:75008374-75008393 | None:intergenic | 60.0% | |
| TCGTTACAGCCTGCGTGCCT+TGG | - | chr6_2:75008402-75008421 | Msa0928820:intron | 60.0% | |
| CGTCGCGTGACTCTCATCGT+TGG | - | chr6_2:75008431-75008450 | Msa0928820:intron | 60.0% | |
| GATTGTGAGGCGACGGTGGC+TGG | + | chr6_2:75007831-75007850 | None:intergenic | 65.0% | |
| ACGGCGAATCCAAGGCACGC+AGG | + | chr6_2:75008414-75008433 | None:intergenic | 65.0% | |
| GTCACGCGACGGCGAATCCA+AGG | + | chr6_2:75008422-75008441 | None:intergenic | 65.0% | |
| GATTGTGAGGCGACGGTGGC+TGG | + | chr6_2:75007831-75007850 | None:intergenic | 65.0% | |
| ACGGCGAATCCAAGGCACGC+AGG | + | chr6_2:75008414-75008433 | None:intergenic | 65.0% | |
| GTCACGCGACGGCGAATCCA+AGG | + | chr6_2:75008422-75008441 | None:intergenic | 65.0% | |
| !! | AATTCGGTGCCCCCTCCGCC+AGG | - | chr6_2:75008362-75008381 | Msa0928820:intron | 70.0% |
| !! | AATTCGGTGCCCCCTCCGCC+AGG | - | chr6_2:75008362-75008381 | Msa0928820:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 75007684 | 75009962 | 75007684 | ID=Msa0928820;Name=Msa0928820 |
| chr6_2 | mRNA | 75007684 | 75009962 | 75007684 | ID=Msa0928820-mRNA-1;Parent=Msa0928820;Name=Msa0928820-mRNA-1;_AED=0.35;_eAED=0.54;_QI=0|0|0.5|1|0|0.5|2|234|94 |
| chr6_2 | exon | 75007684 | 75008013 | 75007684 | ID=Msa0928820-mRNA-1:exon:12768;Parent=Msa0928820-mRNA-1 |
| chr6_2 | exon | 75009774 | 75009962 | 75009774 | ID=Msa0928820-mRNA-1:exon:12767;Parent=Msa0928820-mRNA-1 |
| chr6_2 | CDS | 75009774 | 75009962 | 75009774 | ID=Msa0928820-mRNA-1:cds;Parent=Msa0928820-mRNA-1 |
| chr6_2 | CDS | 75007918 | 75008013 | 75007918 | ID=Msa0928820-mRNA-1:cds;Parent=Msa0928820-mRNA-1 |
| chr6_2 | three_prime_UTR | 75007684 | 75007917 | 75007684 | ID=Msa0928820-mRNA-1:three_prime_utr;Parent=Msa0928820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
