Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1112300 | AES80205.1 | 93.333 | 150 | 10 | 0 | 1 | 150 | 43 | 192 | 2.16e-97 | 289 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1112300 | sp|A0A3Q7JC00|MED25_SOLLC | 57.333 | 150 | 54 | 3 | 4 | 144 | 503 | 651 | 1.17e-37 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1112300 | G7L4Q7 | 93.333 | 150 | 10 | 0 | 1 | 150 | 43 | 192 | 1.03e-97 | 289 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015400 | Msa1112300 | 0.830085 | 3.580684e-55 | -8.615850e-47 |
| Msa0018650 | Msa1112300 | 0.818914 | 1.528560e-52 | -8.615850e-47 |
| Msa0067140 | Msa1112300 | 0.803915 | 2.775313e-49 | -8.615850e-47 |
| Msa0112590 | Msa1112300 | 0.807903 | 4.026227e-50 | -8.615850e-47 |
| Msa0604350 | Msa1112300 | 0.836305 | 1.011361e-56 | -8.615850e-47 |
| Msa0636170 | Msa1112300 | 0.837140 | 6.194982e-57 | -8.615850e-47 |
| Msa0647170 | Msa1112300 | 0.808009 | 3.822298e-50 | -8.615850e-47 |
| Msa0650630 | Msa1112300 | 0.859478 | 4.023379e-63 | -8.615850e-47 |
| Msa0694370 | Msa1112300 | 0.830480 | 2.868425e-55 | -8.615850e-47 |
| Msa0701010 | Msa1112300 | 0.823216 | 1.560755e-53 | -8.615850e-47 |
| Msa0726140 | Msa1112300 | 0.822164 | 2.742403e-53 | -8.615850e-47 |
| Msa0729800 | Msa1112300 | 0.819320 | 1.235767e-52 | -8.615850e-47 |
| Msa0733290 | Msa1112300 | 0.814036 | 1.889798e-51 | -8.615850e-47 |
| Msa0743810 | Msa1112300 | 0.826906 | 2.097412e-54 | -8.615850e-47 |
| Msa0745060 | Msa1112300 | 0.861717 | 8.432371e-64 | -8.615850e-47 |
| Msa0760130 | Msa1112300 | 0.808141 | 3.583972e-50 | -8.615850e-47 |
| Msa0768290 | Msa1112300 | 0.857576 | 1.485464e-62 | -8.615850e-47 |
| Msa0768370 | Msa1112300 | 0.844135 | 9.119121e-59 | -8.615850e-47 |
| Msa0783160 | Msa1112300 | 0.817814 | 2.712481e-52 | -8.615850e-47 |
| Msa0784290 | Msa1112300 | 0.824515 | 7.741382e-54 | -8.615850e-47 |
| Msa0784300 | Msa1112300 | 0.805660 | 1.199021e-49 | -8.615850e-47 |
| Msa0808010 | Msa1112300 | 0.808139 | 3.586949e-50 | -8.615850e-47 |
| Msa0824590 | Msa1112300 | 0.822726 | 2.030450e-53 | -8.615850e-47 |
| Msa0824600 | Msa1112300 | 0.820261 | 7.530995e-53 | -8.615850e-47 |
| Msa0825860 | Msa1112300 | 0.856470 | 3.148325e-62 | -8.615850e-47 |
| Msa0833300 | Msa1112300 | 0.823951 | 1.050424e-53 | -8.615850e-47 |
| Msa0123810 | Msa1112300 | 0.800249 | 1.574458e-48 | -8.615850e-47 |
| Msa0131770 | Msa1112300 | 0.807937 | 3.959353e-50 | -8.615850e-47 |
| Msa0158480 | Msa1112300 | 0.806044 | 9.955948e-50 | -8.615850e-47 |
| Msa0197010 | Msa1112300 | 0.808683 | 2.746068e-50 | -8.615850e-47 |
| Msa0200000 | Msa1112300 | 0.807855 | 4.122202e-50 | -8.615850e-47 |
| Msa0365500 | Msa1112300 | 0.818855 | 1.576794e-52 | -8.615850e-47 |
| Msa0366580 | Msa1112300 | 0.810423 | 1.161388e-50 | -8.615850e-47 |
| Msa0406120 | Msa1112300 | 0.819833 | 9.435767e-53 | -8.615850e-47 |
| Msa0414420 | Msa1112300 | 0.819950 | 8.873687e-53 | -8.615850e-47 |
| Msa0424320 | Msa1112300 | 0.836639 | 8.317334e-57 | -8.615850e-47 |
| Msa0436780 | Msa1112300 | 0.819279 | 1.262480e-52 | -8.615850e-47 |
| Msa0450000 | Msa1112300 | 0.828909 | 6.917840e-55 | -8.615850e-47 |
| Msa0452900 | Msa1112300 | 0.847585 | 1.053881e-59 | -8.615850e-47 |
| Msa0453120 | Msa1112300 | 0.805713 | 1.169043e-49 | -8.615850e-47 |
| Msa0471380 | Msa1112300 | 0.806711 | 7.204035e-50 | -8.615850e-47 |
| Msa0479340 | Msa1112300 | 0.805873 | 1.081772e-49 | -8.615850e-47 |
| Msa0991820 | Msa1112300 | 0.824295 | 8.721989e-54 | -8.615850e-47 |
| Msa0991830 | Msa1112300 | 0.813903 | 2.022270e-51 | -8.615850e-47 |
| Msa0999220 | Msa1112300 | 0.805888 | 1.074114e-49 | -8.615850e-47 |
| Msa1002810 | Msa1112300 | 0.809361 | 1.965991e-50 | -8.615850e-47 |
| Msa1014540 | Msa1112300 | 0.812954 | 3.268904e-51 | -8.615850e-47 |
| Msa1016280 | Msa1112300 | 0.830900 | 2.263618e-55 | -8.615850e-47 |
| Msa1024240 | Msa1112300 | 0.826641 | 2.426380e-54 | -8.615850e-47 |
| Msa1025360 | Msa1112300 | 0.853956 | 1.695921e-61 | -8.615850e-47 |
| Msa1025370 | Msa1112300 | 0.865383 | 6.144538e-65 | -8.615850e-47 |
| Msa1028230 | Msa1112300 | 0.950117 | 3.192015e-108 | -8.615850e-47 |
| Msa1044830 | Msa1112300 | 0.867182 | 1.652526e-65 | -8.615850e-47 |
| Msa1044840 | Msa1112300 | 0.852917 | 3.369707e-61 | -8.615850e-47 |
| Msa1060840 | Msa1112300 | 0.832039 | 1.186419e-55 | -8.615850e-47 |
| Msa1092990 | Msa1112300 | 0.813436 | 2.562496e-51 | -8.615850e-47 |
| Msa1100980 | Msa1112300 | 0.823450 | 1.376122e-53 | -8.615850e-47 |
| Msa0251320 | Msa1112300 | 0.833238 | 5.980728e-56 | -8.615850e-47 |
| Msa0267000 | Msa1112300 | 0.854088 | 1.553835e-61 | -8.615850e-47 |
| Msa0267010 | Msa1112300 | 0.844062 | 9.538347e-59 | -8.615850e-47 |
| Msa0278110 | Msa1112300 | 0.816610 | 5.061871e-52 | -8.615850e-47 |
| Msa0290870 | Msa1112300 | 0.802009 | 6.876141e-49 | -8.615850e-47 |
| Msa0322360 | Msa1112300 | 0.805728 | 1.160408e-49 | -8.615850e-47 |
| Msa0342240 | Msa1112300 | 0.826387 | 2.790373e-54 | -8.615850e-47 |
| Msa0342750 | Msa1112300 | 0.805954 | 1.040298e-49 | -8.615850e-47 |
| Msa0357680 | Msa1112300 | 0.812527 | 4.053063e-51 | -8.615850e-47 |
| Msa0360510 | Msa1112300 | 0.806449 | 8.180043e-50 | -8.615850e-47 |
| Msa1109440 | Msa1112300 | 0.804247 | 2.367536e-49 | -8.615850e-47 |
| Msa1112300 | Msa1121200 | 0.832263 | 1.044187e-55 | -8.615850e-47 |
| Msa1112300 | Msa1121480 | 0.814305 | 1.648630e-51 | -8.615850e-47 |
| Msa1112300 | Msa1121490 | 0.826575 | 2.515649e-54 | -8.615850e-47 |
| Msa1112300 | Msa1135740 | 0.811659 | 6.266470e-51 | -8.615850e-47 |
| Msa1112300 | Msa1136090 | 0.804502 | 2.095186e-49 | -8.615850e-47 |
| Msa1112300 | Msa1137570 | 0.801641 | 8.181909e-49 | -8.615850e-47 |
| Msa1112300 | Msa1146100 | 0.844210 | 8.704391e-59 | -8.615850e-47 |
| Msa1112300 | Msa1146110 | 0.833053 | 6.652669e-56 | -8.615850e-47 |
| Msa1112300 | Msa1173920 | 0.852428 | 4.647310e-61 | -8.615850e-47 |
| Msa1112300 | Msa1178340 | 0.836314 | 1.006464e-56 | -8.615850e-47 |
| Msa1112300 | Msa1187940 | 0.830481 | 2.865743e-55 | -8.615850e-47 |
| Msa1112300 | Msa1187950 | 0.801815 | 7.535653e-49 | -8.615850e-47 |
| Msa1112300 | Msa1205020 | 0.818403 | 1.996762e-52 | -8.615850e-47 |
| Msa1112300 | Msa1230430 | 0.801894 | 7.260863e-49 | -8.615850e-47 |
| Msa1112300 | Msa1241010 | 0.833058 | 6.630426e-56 | -8.615850e-47 |
| Msa1112300 | Msa1244250 | 0.800050 | 1.728657e-48 | -8.615850e-47 |
| Msa1112300 | Msa1246880 | 0.805595 | 1.237259e-49 | -8.615850e-47 |
| Msa1112300 | Msa1248310 | 0.822252 | 2.616686e-53 | -8.615850e-47 |
| Msa1112300 | Msa1248370 | 0.810495 | 1.120368e-50 | -8.615850e-47 |
| Msa1112300 | Msa1269670 | 0.863750 | 1.991590e-64 | -8.615850e-47 |
| Msa1112300 | Msa1270230 | 0.831442 | 1.665169e-55 | -8.615850e-47 |
| Msa1112300 | Msa1270240 | 0.826222 | 3.053686e-54 | -8.615850e-47 |
| Msa1112300 | Msa1270270 | 0.835440 | 1.676418e-56 | -8.615850e-47 |
| Msa1112300 | Msa1283330 | 0.842544 | 2.423054e-58 | -8.615850e-47 |
| Msa1112300 | Msa1284680 | 0.801715 | 7.898640e-49 | -8.615850e-47 |
| Msa1112300 | Msa1285930 | 0.809452 | 1.878682e-50 | -8.615850e-47 |
| Msa1112300 | Msa1287800 | 0.813381 | 2.635056e-51 | -8.615850e-47 |
| Msa1112300 | Msa1287810 | 0.829264 | 5.672709e-55 | -8.615850e-47 |
| Msa1112300 | Msa1288560 | 0.801013 | 1.099787e-48 | -8.615850e-47 |
| Msa1112300 | Msa1289430 | 0.820759 | 5.786868e-53 | -8.615850e-47 |
| Msa1112300 | Msa1297210 | 0.822055 | 2.907215e-53 | -8.615850e-47 |
| Msa1112300 | Msa1307890 | 0.826708 | 2.339071e-54 | -8.615850e-47 |
| Msa1112300 | Msa1320300 | 0.803157 | 3.985375e-49 | -8.615850e-47 |
| Msa1112300 | Msa1321560 | 0.843015 | 1.817258e-58 | -8.615850e-47 |
| Msa1112300 | Msa1340590 | 0.834718 | 2.549241e-56 | -8.615850e-47 |
| Msa1112300 | Msa1345660 | 0.835809 | 1.351732e-56 | -8.615850e-47 |
| Msa1112300 | Msa1366810 | 0.834447 | 2.981672e-56 | -8.615850e-47 |
| Msa1112300 | Msa1386330 | 0.822247 | 2.623615e-53 | -8.615850e-47 |
| Msa1112300 | Msa1397580 | 0.835224 | 1.900086e-56 | -8.615850e-47 |
| Msa1112300 | Msa1404000 | 0.815081 | 1.109893e-51 | -8.615850e-47 |
| Msa1112300 | Msa1415310 | 0.836756 | 7.763927e-57 | -8.615850e-47 |
| Msa1112300 | Msa1422180 | 0.811945 | 5.431521e-51 | -8.615850e-47 |
| Msa1112300 | Msa1433120 | 0.810970 | 8.842538e-51 | -8.615850e-47 |
| Msa0491590 | Msa1112300 | 0.808010 | 3.821029e-50 | -8.615850e-47 |
| Msa0506270 | Msa1112300 | 0.807604 | 4.661188e-50 | -8.615850e-47 |
| Msa0523940 | Msa1112300 | 0.847017 | 1.508989e-59 | -8.615850e-47 |
| Msa0564890 | Msa1112300 | 0.816449 | 5.499626e-52 | -8.615850e-47 |
| Msa0844490 | Msa1112300 | 0.829304 | 5.547576e-55 | -8.615850e-47 |
| Msa0844500 | Msa1112300 | 0.850452 | 1.683150e-60 | -8.615850e-47 |
| Msa0845930 | Msa1112300 | 0.813439 | 2.557983e-51 | -8.615850e-47 |
| Msa0846330 | Msa1112300 | 0.826387 | 2.789292e-54 | -8.615850e-47 |
| Msa0846350 | Msa1112300 | 0.812258 | 4.639976e-51 | -8.615850e-47 |
| Msa0857680 | Msa1112300 | 0.805026 | 1.627931e-49 | -8.615850e-47 |
| Msa0858980 | Msa1112300 | 0.815258 | 1.013527e-51 | -8.615850e-47 |
| Msa0864070 | Msa1112300 | 0.815966 | 7.052024e-52 | -8.615850e-47 |
| Msa0865320 | Msa1112300 | 0.841137 | 5.702123e-58 | -8.615850e-47 |
| Msa0877250 | Msa1112300 | 0.851608 | 7.945521e-61 | -8.615850e-47 |
| Msa0885290 | Msa1112300 | 0.829737 | 4.353537e-55 | -8.615850e-47 |
| Msa0888370 | Msa1112300 | 0.837360 | 5.442211e-57 | -8.615850e-47 |
| Msa0888420 | Msa1112300 | 0.861068 | 1.330208e-63 | -8.615850e-47 |
| Msa0899430 | Msa1112300 | 0.849423 | 3.263922e-60 | -8.615850e-47 |
| Msa0899450 | Msa1112300 | 0.853773 | 1.914360e-61 | -8.615850e-47 |
| Msa0914270 | Msa1112300 | 0.807626 | 4.611359e-50 | -8.615850e-47 |
| Msa0914760 | Msa1112300 | 0.836137 | 1.116153e-56 | -8.615850e-47 |
| Msa0927380 | Msa1112300 | 0.816212 | 6.213384e-52 | -8.615850e-47 |
| Msa0928820 | Msa1112300 | 0.800752 | 1.243623e-48 | -8.615850e-47 |
| Msa0952720 | Msa1112300 | 0.830603 | 2.675465e-55 | -8.615850e-47 |
| Msa0953120 | Msa1112300 | 0.821903 | 3.152318e-53 | -8.615850e-47 |
| Msa0954910 | Msa1112300 | 0.814719 | 1.335245e-51 | -8.615850e-47 |
| Msa0958550 | Msa1112300 | 0.839738 | 1.323971e-57 | -8.615850e-47 |
| Msa0964900 | Msa1112300 | 0.822644 | 2.121818e-53 | -8.615850e-47 |
| Msa0966750 | Msa1112300 | 0.814732 | 1.326220e-51 | -8.615850e-47 |
| Msa0967580 | Msa1112300 | 0.803895 | 2.802591e-49 | -8.615850e-47 |
| Msa0969520 | Msa1112300 | 0.804829 | 1.789795e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1112300 | MtrunA17_Chr5g0422711 | 67.123 | 146 | 41 | 3 | 4 | 144 | 523 | 666 | 4.63e-52 | 176 |
| Msa1112300 | MtrunA17_Chr1g0149681 | 59.333 | 150 | 54 | 3 | 1 | 145 | 358 | 505 | 1.07e-47 | 162 |
| Msa1112300 | MtrunA17_Chr5g0422721 | 55.725 | 131 | 52 | 2 | 25 | 154 | 164 | 289 | 2.31e-36 | 128 |
| Msa1112300 | MtrunA17_Chr5g0422721 | 58.182 | 110 | 45 | 1 | 35 | 144 | 29 | 137 | 1.09e-32 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1112300 | AT1G25540.2 | 58.824 | 136 | 51 | 3 | 9 | 144 | 429 | 559 | 1.50e-35 | 130 |
| Msa1112300 | AT1G25540.1 | 58.824 | 136 | 51 | 3 | 9 | 144 | 538 | 668 | 2.12e-35 | 130 |
Find 24 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGGAACATACTTCGAGTT+TGG | 0.386405 | 7_3:+58256396 | None:intergenic |
| TAATACAACTTACGTCTTAG+AGG | 0.386407 | 7_3:+58256166 | None:intergenic |
| ATTTCAGACTTGCAGCAAAC+TGG | 0.409253 | 7_3:-58255256 | Msa1112300:intron |
| AATCAAAGTATACAAGGTTC+TGG | 0.432495 | 7_3:-58257090 | Msa1112300:CDS |
| TCACCTGAAGGAAAAGAAAC+TGG | 0.448899 | 7_3:-58254945 | Msa1112300:intron |
| AATAGTTCGGCTTATATCTC+AGG | 0.451231 | 7_3:-58255219 | Msa1112300:CDS |
| AGCATCCCAATCAACCGGTT+GGG | 0.469302 | 7_3:+58254504 | None:intergenic |
| CTTCTGATATGCAAATAGTT+CGG | 0.480930 | 7_3:-58255232 | Msa1112300:CDS |
| GTAAAAGCATCCCAATCAAC+CGG | 0.510076 | 7_3:+58254499 | None:intergenic |
| CTGCACAATCAAAGTATACA+AGG | 0.521322 | 7_3:-58257096 | Msa1112300:CDS |
| GACTAGGCAACATGTAAGAA+AGG | 0.521743 | 7_3:-58255014 | Msa1112300:intron |
| AAGCATCCCAATCAACCGGT+TGG | 0.538353 | 7_3:+58254503 | None:intergenic |
| TCTGATTCTACTTCTTGCTG+AGG | 0.539589 | 7_3:+58257169 | None:intergenic |
| CTTAGAGGCAGAAGAACTCC+TGG | 0.554984 | 7_3:+58256181 | None:intergenic |
| AATAGTAGCAATGTCTGTGA+TGG | 0.562084 | 7_3:+58254540 | None:intergenic |
| AGGTGACTATGAGAACGACT+TGG | 0.565654 | 7_3:+58254962 | None:intergenic |
| AGGGAAGCTTAACAGAACTA+AGG | 0.572407 | 7_3:-58256441 | Msa1112300:CDS |
| GGTGACTATGAGAACGACTT+GGG | 0.581389 | 7_3:+58254963 | None:intergenic |
| GCAGCTGCATCATTCTCAAG+CGG | 0.604141 | 7_3:+58257139 | None:intergenic |
| CGAACTATTTGCATATCAGA+AGG | 0.611737 | 7_3:+58255233 | None:intergenic |
| AAAGTATACAAGGTTCTGGA+AGG | 0.612057 | 7_3:-58257086 | Msa1112300:intron |
| TCGTTCTCATAGTCACCTGA+AGG | 0.628223 | 7_3:-58254957 | Msa1112300:CDS |
| AGCTTAACAGAACTAAGGCA+AGG | 0.649152 | 7_3:-58256436 | Msa1112300:CDS |
| CGACGACTATATGTTACCTG+AGG | 0.708083 | 7_3:+58254477 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAATATATATATATA+GGG | - | chr7_3:58254919-58254938 | Msa1112300:intron | 0.0% |
| !!! | TATTATTTTTTTATATATAA+AGG | + | chr7_3:58255742-58255761 | None:intergenic | 0.0% |
| !!! | ATTCTTTTCAATATAAATAT+AGG | - | chr7_3:58254870-58254889 | Msa1112300:intron | 10.0% |
| !! | AATTATCAATAAAAGTTAAT+CGG | + | chr7_3:58255701-58255720 | None:intergenic | 10.0% |
| !! | ATATATTACAAATTGAATTA+AGG | + | chr7_3:58256527-58256546 | None:intergenic | 10.0% |
| !!! | TAAACATATTGTTTAATTTT+AGG | - | chr7_3:58257056-58257075 | Msa1112300:intron | 10.0% |
| !!! | AAACATATTGTTTAATTTTA+GGG | - | chr7_3:58257057-58257076 | Msa1112300:intron | 10.0% |
| !! | TTTATATTGAAAAGAATCTA+GGG | + | chr7_3:58254867-58254886 | None:intergenic | 15.0% |
| !! | ATTTATATTGAAAAGAATCT+AGG | + | chr7_3:58254868-58254887 | None:intergenic | 15.0% |
| !!! | AATCCTAATGTATAATTTTT+CGG | - | chr7_3:58255422-58255441 | Msa1112300:intron | 15.0% |
| !! | TATTATTTATTAGTACCATT+TGG | - | chr7_3:58255554-58255573 | Msa1112300:intron | 15.0% |
| !!! | GTAAGTTAATATTTTTATCT+CGG | + | chr7_3:58256101-58256120 | None:intergenic | 15.0% |
| !! | AAAGAGAGAAAAAAAAATTA+AGG | + | chr7_3:58256468-58256487 | None:intergenic | 15.0% |
| !!! | CTAGAACTTTTTTTTTTTAA+TGG | - | chr7_3:58256906-58256925 | Msa1112300:intron | 15.0% |
| !!! | TACACAATTTTCTTGTAAAT+TGG | - | chr7_3:58254630-58254649 | Msa1112300:intron | 20.0% |
| !! | AAATATATATATATAGGGAG+CGG | - | chr7_3:58254924-58254943 | Msa1112300:intron | 20.0% |
| !! | AACAAAACTATAATGTACAT+AGG | + | chr7_3:58255347-58255366 | None:intergenic | 20.0% |
| !! | AAAGTAGTATTTCCTTAAAA+TGG | - | chr7_3:58255646-58255665 | Msa1112300:intron | 20.0% |
| !! | AATAGGAAATTCATTATTTC+AGG | + | chr7_3:58255993-58256012 | None:intergenic | 20.0% |
| !!! | CTCTCTTTTTTAATTATATG+AGG | - | chr7_3:58256480-58256499 | Msa1112300:intron | 20.0% |
| !! | TACAATATTAATTTCATGAC+TGG | - | chr7_3:58256936-58256955 | Msa1112300:intron | 20.0% |
| ! | TGAGAGATAAAGTTGAATTA+GGG | + | chr7_3:58254601-58254620 | None:intergenic | 25.0% |
| !! | ACTTTTATCTTATAACCAAG+CGG | - | chr7_3:58254759-58254778 | Msa1112300:intron | 25.0% |
| !! | AGACTAATAACCTTTGTTAT+TGG | + | chr7_3:58255001-58255020 | None:intergenic | 25.0% |
| !! | TATGTATTTTTCTTGCAGTT+AGG | + | chr7_3:58255261-58255280 | None:intergenic | 25.0% |
| ! | AGTATTTCCTTAAAATGGTT+TGG | - | chr7_3:58255651-58255670 | Msa1112300:intron | 25.0% |
| !! | AAACAAACCAAACCATTTTA+AGG | + | chr7_3:58255661-58255680 | None:intergenic | 25.0% |
| !!! | TTAAAATGGTTTGGTTTGTT+TGG | - | chr7_3:58255660-58255679 | Msa1112300:intron | 25.0% |
| !!! | ACTAATCATTTTTGCACAAT+AGG | + | chr7_3:58256010-58256029 | None:intergenic | 25.0% |
| ! | AATATTAACTTACCTGTGAA+TGG | - | chr7_3:58256108-58256127 | Msa1112300:intron | 25.0% |
| ! | AAATTAGTATCACGTATGTT+AGG | + | chr7_3:58256359-58256378 | None:intergenic | 25.0% |
| ! | ACATGTACAGAAAAAATTCT+AGG | + | chr7_3:58256584-58256603 | None:intergenic | 25.0% |
| !! | TAATTTTGTATGTTGTGACT+AGG | - | chr7_3:58256606-58256625 | Msa1112300:intron | 25.0% |
| ! | ACCTCAATTTCATTATTTAG+GGG | + | chr7_3:58256813-58256832 | None:intergenic | 25.0% |
| ! | CACCTCAATTTCATTATTTA+GGG | + | chr7_3:58256814-58256833 | None:intergenic | 25.0% |
| ! | ACACCTCAATTTCATTATTT+AGG | + | chr7_3:58256815-58256834 | None:intergenic | 25.0% |
| ! | ATTAATGATTCAGAACCAAA+AGG | + | chr7_3:58256872-58256891 | None:intergenic | 25.0% |
| AATCAAAGTATACAAGGTTC+TGG | - | chr7_3:58254546-58254565 | Msa1112300:CDS | 30.0% | |
| AGTTGAATTAGGGTTTAAGA+AGG | + | chr7_3:58254591-58254610 | None:intergenic | 30.0% | |
| GTGAGAGATAAAGTTGAATT+AGG | + | chr7_3:58254602-58254621 | None:intergenic | 30.0% | |
| TAGTGTCAAACAAAACGAAT+TGG | + | chr7_3:58254676-58254695 | None:intergenic | 30.0% | |
| !!! | TCGTTTTGTTTGACACTAAT+AGG | - | chr7_3:58254678-58254697 | Msa1112300:intron | 30.0% |
| ! | GTATTCTTTTGGCAAAAATG+TGG | - | chr7_3:58254781-58254800 | Msa1112300:intron | 30.0% |
| GAAATCATTGCCAATAACAA+AGG | - | chr7_3:58254988-58255007 | Msa1112300:CDS | 30.0% | |
| GTAATTGTCAAAGAATGAAC+CGG | - | chr7_3:58255091-58255110 | Msa1112300:intron | 30.0% | |
| GTACATAGGAAAATGATAGT+AGG | + | chr7_3:58255333-58255352 | None:intergenic | 30.0% | |
| CCACCGAAAAATTATACATT+AGG | + | chr7_3:58255428-58255447 | None:intergenic | 30.0% | |
| !! | CCTAATGTATAATTTTTCGG+TGG | - | chr7_3:58255425-58255444 | Msa1112300:intron | 30.0% |
| TAATACAACTTACGTCTTAG+AGG | + | chr7_3:58255473-58255492 | None:intergenic | 30.0% | |
| !! | TTATTAGTACCATTTGGTGT+TGG | - | chr7_3:58255560-58255579 | Msa1112300:intron | 30.0% |
| !! | TATTAGTACCATTTGGTGTT+GGG | - | chr7_3:58255561-58255580 | Msa1112300:intron | 30.0% |
| AGAGCAAAGAATTTATGATG+TGG | - | chr7_3:58255606-58255625 | Msa1112300:intron | 30.0% | |
| TAATTGAAGCTATAGCTTAG+CGG | - | chr7_3:58255779-58255798 | Msa1112300:intron | 30.0% | |
| TTGTACTAAATAGCATATCG+CGG | + | chr7_3:58255828-58255847 | None:intergenic | 30.0% | |
| CAGGCTTAAGTTTAATCAAA+TGG | + | chr7_3:58255974-58255993 | None:intergenic | 30.0% | |
| TAGTACAACATATTTGTGTC+TGG | - | chr7_3:58256050-58256069 | Msa1112300:intron | 30.0% | |
| TTTATCTCGGAAAAAAAACC+TGG | + | chr7_3:58256088-58256107 | None:intergenic | 30.0% | |
| TTACTATTACTTCCATTCAC+AGG | + | chr7_3:58256123-58256142 | None:intergenic | 30.0% | |
| ATTTGAACAATCAATTCAGC+TGG | - | chr7_3:58256176-58256195 | Msa1112300:intron | 30.0% | |
| ACTTACATGCGTATATGATT+TGG | + | chr7_3:58256336-58256355 | None:intergenic | 30.0% | |
| CTTCTGATATGCAAATAGTT+CGG | - | chr7_3:58256404-58256423 | Msa1112300:intron | 30.0% | |
| GTGGGTTTAAATTAGAAACT+CGG | + | chr7_3:58256727-58256746 | None:intergenic | 30.0% | |
| !!! | AACCCACTTGTTTTACATTT+CGG | - | chr7_3:58256740-58256759 | Msa1112300:intron | 30.0% |
| CAATTTCATTATTTAGGGGA+AGG | + | chr7_3:58256809-58256828 | None:intergenic | 30.0% | |
| TCCCCTAAATAATGAAATTG+AGG | - | chr7_3:58256809-58256828 | Msa1112300:intron | 30.0% | |
| !!! | GGTGTTATTTTTGAGTATCA+TGG | + | chr7_3:58256978-58256997 | None:intergenic | 30.0% |
| CTGCACAATCAAAGTATACA+AGG | - | chr7_3:58254540-58254559 | Msa1112300:CDS | 35.0% | |
| !! | AAAGTATACAAGGTTCTGGA+AGG | - | chr7_3:58254550-58254569 | Msa1112300:CDS | 35.0% |
| ! | TGGTGATGAAAAATTGTGTG+TGG | + | chr7_3:58254656-58254675 | None:intergenic | 35.0% |
| ! | ATAACCAAGCGGTATTCTTT+TGG | - | chr7_3:58254770-58254789 | Msa1112300:intron | 35.0% |
| !! | CAGTAACAAAGTGTTTTCAC+TGG | + | chr7_3:58254952-58254971 | None:intergenic | 35.0% |
| TCAATGATTGAAAGTCATGC+AGG | - | chr7_3:58255175-58255194 | Msa1112300:intron | 35.0% | |
| CAATGATTGAAAGTCATGCA+GGG | - | chr7_3:58255176-58255195 | Msa1112300:intron | 35.0% | |
| ! | TTAGGAACATACTTCGAGTT+TGG | + | chr7_3:58255243-58255262 | None:intergenic | 35.0% |
| AAAATCAACCCAACACCAAA+TGG | + | chr7_3:58255572-58255591 | None:intergenic | 35.0% | |
| !!! | ATTTGGTGTTGGGTTGATTT+TGG | - | chr7_3:58255571-58255590 | Msa1112300:intron | 35.0% |
| TTCATTGAAGCTTCAATCGT+GGG | + | chr7_3:58255907-58255926 | None:intergenic | 35.0% | |
| TCTCAGCAATTTATAACCGA+CGG | - | chr7_3:58255947-58255966 | Msa1112300:intron | 35.0% | |
| AGTTTAATCAAATGGACCGT+CGG | + | chr7_3:58255966-58255985 | None:intergenic | 35.0% | |
| GTCTGGTTAGAAAAAAAACC+AGG | - | chr7_3:58256067-58256086 | Msa1112300:intron | 35.0% | |
| !! | GTATATGATTTGGTCAGACA+GGG | + | chr7_3:58256326-58256345 | None:intergenic | 35.0% |
| CGAACTATTTGCATATCAGA+AGG | + | chr7_3:58256406-58256425 | None:intergenic | 35.0% | |
| AATAGTTCGGCTTATATCTC+AGG | - | chr7_3:58256417-58256436 | Msa1112300:CDS | 35.0% | |
| !! | AGGAAGATCTCCTAGTTTTT+CGG | - | chr7_3:58256642-58256661 | Msa1112300:intron | 35.0% |
| !!! | ACCCACTTGTTTTACATTTC+GGG | - | chr7_3:58256741-58256760 | Msa1112300:intron | 35.0% |
| ACCCGAAATGTAAAACAAGT+GGG | + | chr7_3:58256745-58256764 | None:intergenic | 35.0% | |
| AACCCGAAATGTAAAACAAG+TGG | + | chr7_3:58256746-58256765 | None:intergenic | 35.0% | |
| TATTTAGGGGAAGGATATCA+GGG | + | chr7_3:58256800-58256819 | None:intergenic | 35.0% | |
| TTATTTAGGGGAAGGATATC+AGG | + | chr7_3:58256801-58256820 | None:intergenic | 35.0% | |
| ! | CTCAAGAACTCAATTCCTTT+TGG | - | chr7_3:58256854-58256873 | Msa1112300:intron | 35.0% |
| TGTTACATGTCTACACAGTA+TGG | - | chr7_3:58257024-58257043 | Msa1112300:intron | 35.0% | |
| AATAGTAGCAATGTCTGTGA+TGG | + | chr7_3:58257099-58257118 | None:intergenic | 35.0% | |
| !! | TTGTTTCTGAAAAACCCAAC+CGG | - | chr7_3:58257118-58257137 | Msa1112300:CDS | 35.0% |
| TCTGATTCTACTTCTTGCTG+AGG | + | chr7_3:58254470-58254489 | None:intergenic | 40.0% | |
| TTTGCCAAAAGAATACCGCT+TGG | + | chr7_3:58254777-58254796 | None:intergenic | 40.0% | |
| AGGGAAGCTTAACAGAACTA+AGG | - | chr7_3:58255195-58255214 | Msa1112300:intron | 40.0% | |
| AGCTTAACAGAACTAAGGCA+AGG | - | chr7_3:58255200-58255219 | Msa1112300:CDS | 40.0% | |
| TATAGCTTAGCACTATTGCG+TGG | - | chr7_3:58255850-58255869 | Msa1112300:intron | 40.0% | |
| CTTCATTGAAGCTTCAATCG+TGG | + | chr7_3:58255908-58255927 | None:intergenic | 40.0% | |
| GCTGCAATGGCATGTTTATA+CGG | - | chr7_3:58256263-58256282 | Msa1112300:intron | 40.0% | |
| CAGGGAAGTCAAAATCAGAT+AGG | + | chr7_3:58256308-58256327 | None:intergenic | 40.0% | |
| !! | CGTATATGATTTGGTCAGAC+AGG | + | chr7_3:58256327-58256346 | None:intergenic | 40.0% |
| ATTTCAGACTTGCAGCAAAC+TGG | - | chr7_3:58256380-58256399 | Msa1112300:intron | 40.0% | |
| GACTAGGCAACATGTAAGAA+AGG | - | chr7_3:58256622-58256641 | Msa1112300:intron | 40.0% | |
| !! | GGAAGATCTCCTAGTTTTTC+GGG | - | chr7_3:58256643-58256662 | Msa1112300:intron | 40.0% |
| TCACCTGAAGGAAAAGAAAC+TGG | - | chr7_3:58256691-58256710 | Msa1112300:intron | 40.0% | |
| ! | CTACCAGTTTCTTTTCCTTC+AGG | + | chr7_3:58256697-58256716 | None:intergenic | 40.0% |
| CTGAAGGAAAAGAAACTGGT+AGG | - | chr7_3:58256695-58256714 | Msa1112300:intron | 40.0% | |
| CACCAAAGAAGGTAACTCTA+CGG | + | chr7_3:58256999-58257018 | None:intergenic | 40.0% | |
| GTAACACTTGTCACCAAAGA+AGG | + | chr7_3:58257010-58257029 | None:intergenic | 40.0% | |
| AAAAACCCAACCGGTTGATT+GGG | - | chr7_3:58257127-58257146 | Msa1112300:CDS | 40.0% | |
| !! | GTAAAAGCATCCCAATCAAC+CGG | + | chr7_3:58257140-58257159 | None:intergenic | 40.0% |
| TGTCAAAGAATGAACCGGTG+CGG | - | chr7_3:58255096-58255115 | Msa1112300:intron | 45.0% | |
| ! | CGGTGGTGGTAGCAATTTAT+TGG | - | chr7_3:58255116-58255135 | Msa1112300:intron | 45.0% |
| AATCCTCGAACTGATTGCCA+TGG | - | chr7_3:58256212-58256231 | Msa1112300:intron | 45.0% | |
| TGCAGCCTATGACTGAAACA+CGG | + | chr7_3:58256249-58256268 | None:intergenic | 45.0% | |
| GTTTCAGTCATAGGCTGCAA+TGG | - | chr7_3:58256250-58256269 | Msa1112300:intron | 45.0% | |
| GCAATGGCATGTTTATACGG+TGG | - | chr7_3:58256266-58256285 | Msa1112300:intron | 45.0% | |
| GGTGACTATGAGAACGACTT+GGG | + | chr7_3:58256676-58256695 | None:intergenic | 45.0% | |
| AGGTGACTATGAGAACGACT+TGG | + | chr7_3:58256677-58256696 | None:intergenic | 45.0% | |
| TCGTTCTCATAGTCACCTGA+AGG | - | chr7_3:58256679-58256698 | Msa1112300:intron | 45.0% | |
| CACCGTAGAGTTACCTTCTT+TGG | - | chr7_3:58256994-58257013 | Msa1112300:intron | 45.0% | |
| ATGTCTACACAGTATGGCTG+TGG | - | chr7_3:58257030-58257049 | Msa1112300:intron | 45.0% | |
| GAAAAACCCAACCGGTTGAT+TGG | - | chr7_3:58257126-58257145 | Msa1112300:CDS | 45.0% | |
| ! | GATTGGGATGCTTTTACCTC+AGG | - | chr7_3:58257143-58257162 | Msa1112300:CDS | 45.0% |
| CGACGACTATATGTTACCTG+AGG | + | chr7_3:58257162-58257181 | None:intergenic | 45.0% | |
| !! | TATATATATTTATATTGAAA+AGG | + | chr7_3:58254915-58254934 | None:intergenic | 5.0% |
| !! | CAATATAAATATATATATAT+AGG | - | chr7_3:58254918-58254937 | Msa1112300:intron | 5.0% |
| GCAGCTGCATCATTCTCAAG+CGG | + | chr7_3:58254500-58254519 | None:intergenic | 50.0% | |
| !! | TTTTTCGGTGGCAGTGTTCC+AGG | - | chr7_3:58255437-58255456 | Msa1112300:intron | 50.0% |
| CTTAGAGGCAGAAGAACTCC+TGG | + | chr7_3:58255458-58255477 | None:intergenic | 50.0% | |
| AGCTTAGCACTATTGCGTGG+CGG | - | chr7_3:58255853-58255872 | Msa1112300:intron | 50.0% | |
| GAAGCTTCAATCGTGGGTAG+CGG | + | chr7_3:58255901-58255920 | None:intergenic | 50.0% | |
| GGTTCACTGCCCGAAAAACT+AGG | + | chr7_3:58256655-58256674 | None:intergenic | 50.0% | |
| AGCATCCCAATCAACCGGTT+GGG | + | chr7_3:58257135-58257154 | None:intergenic | 50.0% | |
| AAGCATCCCAATCAACCGGT+TGG | + | chr7_3:58257136-58257155 | None:intergenic | 50.0% | |
| CAAAGAATGAACCGGTGCGG+TGG | - | chr7_3:58255099-58255118 | Msa1112300:intron | 55.0% | |
| AATTGCTACCACCACCGCAC+CGG | + | chr7_3:58255113-58255132 | None:intergenic | 55.0% | |
| ACGCCATGGCAATCAGTTCG+AGG | + | chr7_3:58256218-58256237 | None:intergenic | 55.0% | |
| ACGCGCCGTGTTTCAGTCAT+AGG | - | chr7_3:58256241-58256260 | Msa1112300:intron | 55.0% | |
| AGAATGAACCGGTGCGGTGG+TGG | - | chr7_3:58255102-58255121 | Msa1112300:intron | 60.0% | |
| ACACGGCGCGTATAACGCCA+TGG | + | chr7_3:58256232-58256251 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 58254464 | 58257194 | 58254464 | ID=Msa1112300;Name=Msa1112300 |
| chr7_3 | mRNA | 58254464 | 58257194 | 58254464 | ID=Msa1112300-mRNA-1;Parent=Msa1112300;Name=Msa1112300-mRNA-1;_AED=0.17;_eAED=0.18;_QI=0|0|0|1|0.6|0.83|6|0|154 |
| chr7_3 | exon | 58257087 | 58257194 | 58257087 | ID=Msa1112300-mRNA-1:exon:12754;Parent=Msa1112300-mRNA-1 |
| chr7_3 | exon | 58256408 | 58256461 | 58256408 | ID=Msa1112300-mRNA-1:exon:12753;Parent=Msa1112300-mRNA-1 |
| chr7_3 | exon | 58256179 | 58256207 | 58256179 | ID=Msa1112300-mRNA-1:exon:12752;Parent=Msa1112300-mRNA-1 |
| chr7_3 | exon | 58255200 | 58255271 | 58255200 | ID=Msa1112300-mRNA-1:exon:12751;Parent=Msa1112300-mRNA-1 |
| chr7_3 | exon | 58254946 | 58255030 | 58254946 | ID=Msa1112300-mRNA-1:exon:12750;Parent=Msa1112300-mRNA-1 |
| chr7_3 | exon | 58254464 | 58254580 | 58254464 | ID=Msa1112300-mRNA-1:exon:12749;Parent=Msa1112300-mRNA-1 |
| chr7_3 | CDS | 58257087 | 58257194 | 58257087 | ID=Msa1112300-mRNA-1:cds;Parent=Msa1112300-mRNA-1 |
| chr7_3 | CDS | 58256408 | 58256461 | 58256408 | ID=Msa1112300-mRNA-1:cds;Parent=Msa1112300-mRNA-1 |
| chr7_3 | CDS | 58256179 | 58256207 | 58256179 | ID=Msa1112300-mRNA-1:cds;Parent=Msa1112300-mRNA-1 |
| chr7_3 | CDS | 58255200 | 58255271 | 58255200 | ID=Msa1112300-mRNA-1:cds;Parent=Msa1112300-mRNA-1 |
| chr7_3 | CDS | 58254946 | 58255030 | 58254946 | ID=Msa1112300-mRNA-1:cds;Parent=Msa1112300-mRNA-1 |
| chr7_3 | CDS | 58254464 | 58254580 | 58254464 | ID=Msa1112300-mRNA-1:cds;Parent=Msa1112300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
