AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1044830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 15 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTATTGGAGAAGTTTCA+TGG 0.356631 7_2:+3879606 Msa1044830:CDS
AAAATCCAGCTTTCGAGATA+TGG 0.371968 7_2:-3879530 None:intergenic
TGTTGACTTCAGCGAACTTT+CGG 0.382328 7_2:+3879492 Msa1044830:CDS
TTTGAACAAGTAGTGGTGAT+TGG 0.419006 7_2:-3879633 None:intergenic
AATTCAGAGCAAGGGAGTGA+TGG 0.492238 7_2:+3877368 Msa1044830:CDS
TTGAACAAGTAGTGGTGATT+GGG 0.499146 7_2:-3879632 None:intergenic
TGATACCATATCTCGAAAGC+TGG 0.511555 7_2:+3879525 Msa1044830:CDS
TCCTCAATCATCGTCAAGTA+CGG 0.517347 7_2:+3877415 Msa1044830:CDS
TTTCTGGTGTTTGCAAGGAG+TGG 0.522122 7_2:+3879569 Msa1044830:CDS
CTGGTGTTTGCAAGGAGTGG+AGG 0.526377 7_2:+3879572 Msa1044830:CDS
GTGATGGAGATGATTCTAAG+AGG 0.586614 7_2:+3877384 Msa1044830:CDS
GAAGTTGTTTGAACAAGTAG+TGG 0.607939 7_2:-3879640 None:intergenic
CTCACAAAGAATTCAGAGCA+AGG 0.609873 7_2:+3877359 Msa1044830:CDS
ACCGTACTTGACGATGATTG+AGG 0.635962 7_2:-3877416 None:intergenic
TCACAAAGAATTCAGAGCAA+GGG 0.646539 7_2:+3877360 Msa1044830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATAGAATTAGAAATTA+TGG - chr7_2:3878163-3878182 None:intergenic 10.0%
!!! TGAAATATTACATATTTTTA+GGG + chr7_2:3878192-3878211 Msa1044830:intron 10.0%
!! ATTAATAGAATTAGAAATTA+TGG - chr7_2:3878163-3878182 None:intergenic 10.0%
!!! TGAAATATTACATATTTTTA+GGG + chr7_2:3878192-3878211 Msa1044830:intron 10.0%
!!! GTGAAATATTACATATTTTT+AGG + chr7_2:3878191-3878210 Msa1044830:intron 15.0%
!!! AGTTTATTCTTTTTTCTTTT+CGG + chr7_2:3878235-3878254 Msa1044830:intron 15.0%
!!! TAGTTTTTTAGTTTTTTCTT+TGG - chr7_2:3878280-3878299 None:intergenic 15.0%
!! GAAAAAACTAAAAAACTAAA+TGG + chr7_2:3878282-3878301 Msa1044830:intron 15.0%
!!! TATATAAAAGCAATTTTAGT+GGG - chr7_2:3878525-3878544 None:intergenic 15.0%
!!! ATATATAAAAGCAATTTTAG+TGG - chr7_2:3878526-3878545 None:intergenic 15.0%
!!! GTGAAATATTACATATTTTT+AGG + chr7_2:3878191-3878210 Msa1044830:intron 15.0%
!!! AGTTTATTCTTTTTTCTTTT+CGG + chr7_2:3878235-3878254 Msa1044830:intron 15.0%
!!! TAGTTTTTTAGTTTTTTCTT+TGG - chr7_2:3878280-3878299 None:intergenic 15.0%
!! GAAAAAACTAAAAAACTAAA+TGG + chr7_2:3878282-3878301 Msa1044830:intron 15.0%
!!! TATATAAAAGCAATTTTAGT+GGG - chr7_2:3878525-3878544 None:intergenic 15.0%
!!! ATATATAAAAGCAATTTTAG+TGG - chr7_2:3878526-3878545 None:intergenic 15.0%
!!! ATTACATGATTGTTTTAGAT+TGG + chr7_2:3877719-3877738 Msa1044830:intron 20.0%
!!! TTACATGATTGTTTTAGATT+GGG + chr7_2:3877720-3877739 Msa1044830:intron 20.0%
!!! GTCTTTCAATTAAATTTTGT+GGG + chr7_2:3877809-3877828 Msa1044830:intron 20.0%
!!! TCTTTCAATTAAATTTTGTG+GGG + chr7_2:3877810-3877829 Msa1044830:intron 20.0%
!! ACTAATTATAAGCATTACTT+TGG - chr7_2:3878095-3878114 None:intergenic 20.0%
!! AAAGTAATGCTTATAATTAG+TGG + chr7_2:3878094-3878113 Msa1044830:intron 20.0%
!! AAGTAATGCTTATAATTAGT+GGG + chr7_2:3878095-3878114 Msa1044830:intron 20.0%
!! AAGAAAAAAGAATAAACTGA+AGG - chr7_2:3878233-3878252 None:intergenic 20.0%
!! AATATAAAGAAGCCAAAAAT+AGG + chr7_2:3878395-3878414 Msa1044830:intron 20.0%
!!! TTAGTTTTGTCATAATATGA+GGG - chr7_2:3878446-3878465 None:intergenic 20.0%
!!! TTTAGTTTTGTCATAATATG+AGG - chr7_2:3878447-3878466 None:intergenic 20.0%
!!! ATATAAAAGCAATTTTAGTG+GGG - chr7_2:3878524-3878543 None:intergenic 20.0%
!! ATAGATGATTAAATTGATGT+TGG - chr7_2:3878950-3878969 None:intergenic 20.0%
!!! TTTTTCCAATATCATATAGA+TGG + chr7_2:3879214-3879233 Msa1044830:intron 20.0%
!!! TGCACTTTTATTATTAACAT+TGG + chr7_2:3879413-3879432 Msa1044830:intron 20.0%
!!! GCACTTTTATTATTAACATT+GGG + chr7_2:3879414-3879433 Msa1044830:intron 20.0%
!!! ATTACATGATTGTTTTAGAT+TGG + chr7_2:3877719-3877738 Msa1044830:intron 20.0%
!!! TTACATGATTGTTTTAGATT+GGG + chr7_2:3877720-3877739 Msa1044830:intron 20.0%
!!! GTCTTTCAATTAAATTTTGT+GGG + chr7_2:3877809-3877828 Msa1044830:intron 20.0%
!!! TCTTTCAATTAAATTTTGTG+GGG + chr7_2:3877810-3877829 Msa1044830:intron 20.0%
!! ACTAATTATAAGCATTACTT+TGG - chr7_2:3878095-3878114 None:intergenic 20.0%
!! AAAGTAATGCTTATAATTAG+TGG + chr7_2:3878094-3878113 Msa1044830:intron 20.0%
!! AAGTAATGCTTATAATTAGT+GGG + chr7_2:3878095-3878114 Msa1044830:intron 20.0%
!! AAGAAAAAAGAATAAACTGA+AGG - chr7_2:3878233-3878252 None:intergenic 20.0%
!! AATATAAAGAAGCCAAAAAT+AGG + chr7_2:3878395-3878414 Msa1044830:intron 20.0%
!!! TTAGTTTTGTCATAATATGA+GGG - chr7_2:3878446-3878465 None:intergenic 20.0%
!!! TTTAGTTTTGTCATAATATG+AGG - chr7_2:3878447-3878466 None:intergenic 20.0%
!!! ATATAAAAGCAATTTTAGTG+GGG - chr7_2:3878524-3878543 None:intergenic 20.0%
!! ATAGATGATTAAATTGATGT+TGG - chr7_2:3878950-3878969 None:intergenic 20.0%
!!! TTTTTCCAATATCATATAGA+TGG + chr7_2:3879214-3879233 Msa1044830:intron 20.0%
!!! TGCACTTTTATTATTAACAT+TGG + chr7_2:3879413-3879432 Msa1044830:intron 20.0%
!!! GCACTTTTATTATTAACATT+GGG + chr7_2:3879414-3879433 Msa1044830:intron 20.0%
! ACAATCTCATGAAACAATAT+AGG - chr7_2:3877559-3877578 None:intergenic 25.0%
!!! TAATTTTAACCTATCAGTCA+TGG - chr7_2:3877647-3877666 None:intergenic 25.0%
!! CGTCTTTCAATTAAATTTTG+TGG + chr7_2:3877808-3877827 Msa1044830:intron 25.0%
!!! ATTACTTTGGCTTTATTTCT+AGG - chr7_2:3878082-3878101 None:intergenic 25.0%
! AAAACTAAATGGACATTCTT+AGG + chr7_2:3878293-3878312 Msa1044830:intron 25.0%
!!! CTCTAAAATTCACTTATACA+TGG - chr7_2:3878551-3878570 None:intergenic 25.0%
!!! GCTTGTTTTAAATTTCTGAA+GGG - chr7_2:3878692-3878711 None:intergenic 25.0%
! AAGAAATATGATACTTGCAA+GGG - chr7_2:3878741-3878760 None:intergenic 25.0%
! TAAGAAATATGATACTTGCA+AGG - chr7_2:3878742-3878761 None:intergenic 25.0%
! TATAATAGAATAAACCCATG+GGG - chr7_2:3878811-3878830 None:intergenic 25.0%
! GTATAATAGAATAAACCCAT+GGG - chr7_2:3878812-3878831 None:intergenic 25.0%
! TGTATAATAGAATAAACCCA+TGG - chr7_2:3878813-3878832 None:intergenic 25.0%
! TATTGTTGGAAATCAAAGTA+GGG - chr7_2:3878892-3878911 None:intergenic 25.0%
!!! TTGATGTTGGAATTATTTTG+AGG - chr7_2:3878937-3878956 None:intergenic 25.0%
!!! TATACAATTAAAGTGTCGTT+TGG + chr7_2:3878973-3878992 Msa1044830:intron 25.0%
!! TCAAAGATTTATGGGTTTTA+TGG + chr7_2:3879174-3879193 Msa1044830:intron 25.0%
! ATCAACCATCTATATGATAT+TGG - chr7_2:3879222-3879241 None:intergenic 25.0%
!! TTGAGCCAATATTTTCAAAT+TGG + chr7_2:3879243-3879262 Msa1044830:intron 25.0%
! TAATATCATAGAAAATCGTG+AGG - chr7_2:3879369-3879388 None:intergenic 25.0%
! GGAGAGTTCAAAAAATTTAT+TGG + chr7_2:3879593-3879612 Msa1044830:CDS 25.0%
! AATTTATTGGAGAAGTTTCA+TGG + chr7_2:3879606-3879625 Msa1044830:CDS 25.0%
! ACAATCTCATGAAACAATAT+AGG - chr7_2:3877559-3877578 None:intergenic 25.0%
!!! TAATTTTAACCTATCAGTCA+TGG - chr7_2:3877647-3877666 None:intergenic 25.0%
!! CGTCTTTCAATTAAATTTTG+TGG + chr7_2:3877808-3877827 Msa1044830:intron 25.0%
!!! ATTACTTTGGCTTTATTTCT+AGG - chr7_2:3878082-3878101 None:intergenic 25.0%
! AAAACTAAATGGACATTCTT+AGG + chr7_2:3878293-3878312 Msa1044830:intron 25.0%
!!! CTCTAAAATTCACTTATACA+TGG - chr7_2:3878551-3878570 None:intergenic 25.0%
!!! GCTTGTTTTAAATTTCTGAA+GGG - chr7_2:3878692-3878711 None:intergenic 25.0%
! AAGAAATATGATACTTGCAA+GGG - chr7_2:3878741-3878760 None:intergenic 25.0%
! TAAGAAATATGATACTTGCA+AGG - chr7_2:3878742-3878761 None:intergenic 25.0%
! TATAATAGAATAAACCCATG+GGG - chr7_2:3878811-3878830 None:intergenic 25.0%
! GTATAATAGAATAAACCCAT+GGG - chr7_2:3878812-3878831 None:intergenic 25.0%
! TGTATAATAGAATAAACCCA+TGG - chr7_2:3878813-3878832 None:intergenic 25.0%
! TATTGTTGGAAATCAAAGTA+GGG - chr7_2:3878892-3878911 None:intergenic 25.0%
!!! TTGATGTTGGAATTATTTTG+AGG - chr7_2:3878937-3878956 None:intergenic 25.0%
!!! TATACAATTAAAGTGTCGTT+TGG + chr7_2:3878973-3878992 Msa1044830:intron 25.0%
!! TCAAAGATTTATGGGTTTTA+TGG + chr7_2:3879174-3879193 Msa1044830:intron 25.0%
! ATCAACCATCTATATGATAT+TGG - chr7_2:3879222-3879241 None:intergenic 25.0%
!! TTGAGCCAATATTTTCAAAT+TGG + chr7_2:3879243-3879262 Msa1044830:intron 25.0%
! TAATATCATAGAAAATCGTG+AGG - chr7_2:3879369-3879388 None:intergenic 25.0%
! GGAGAGTTCAAAAAATTTAT+TGG + chr7_2:3879593-3879612 Msa1044830:CDS 25.0%
! AATTTATTGGAGAAGTTTCA+TGG + chr7_2:3879606-3879625 Msa1044830:CDS 25.0%
TTCAACAAAGCAAAACAATG+TGG - chr7_2:3877685-3877704 None:intergenic 30.0%
ATTACTTAGGCTATGTCTTT+AGG - chr7_2:3877774-3877793 None:intergenic 30.0%
AGTTTCGATTATAGTGACTA+GGG - chr7_2:3877982-3878001 None:intergenic 30.0%
TAGTTTCGATTATAGTGACT+AGG - chr7_2:3877983-3878002 None:intergenic 30.0%
TCACTATAATCGAAACTACT+TGG + chr7_2:3877985-3878004 Msa1044830:intron 30.0%
! TTTTCTTTTCGGTACAAAAG+AGG + chr7_2:3878246-3878265 Msa1044830:intron 30.0%
! TTTCTTTTCGGTACAAAAGA+GGG + chr7_2:3878247-3878266 Msa1044830:intron 30.0%
! TTCTTTTTACGATATGTCCA+GGG - chr7_2:3878327-3878346 None:intergenic 30.0%
CTTTAGTTGTACTAATGTTG+AGG - chr7_2:3878374-3878393 None:intergenic 30.0%
CTCAACATTAGTACAACTAA+AGG + chr7_2:3878372-3878391 Msa1044830:intron 30.0%
! TTTAAATTTCTGAAGGGAGA+TGG - chr7_2:3878686-3878705 None:intergenic 30.0%
!!! GGCTTGTTTTAAATTTCTGA+AGG - chr7_2:3878693-3878712 None:intergenic 30.0%
ATTGTTGGAAATCAAAGTAG+GGG - chr7_2:3878891-3878910 None:intergenic 30.0%
GTATTGTTGGAAATCAAAGT+AGG - chr7_2:3878893-3878912 None:intergenic 30.0%
AATGATGACACTTGTATTGT+TGG - chr7_2:3878906-3878925 None:intergenic 30.0%
TATTTCAAGCATCAACTAGA+TGG + chr7_2:3879132-3879151 Msa1044830:intron 30.0%
AGCAGAACTTCAAAGATTTA+TGG + chr7_2:3879165-3879184 Msa1044830:intron 30.0%
GCAGAACTTCAAAGATTTAT+GGG + chr7_2:3879166-3879185 Msa1044830:intron 30.0%
! AGCCAATATTTTCAAATTGG+TGG + chr7_2:3879246-3879265 Msa1044830:intron 30.0%
CACCACCAATTTGAAAATAT+TGG - chr7_2:3879251-3879270 None:intergenic 30.0%
! CAATTCTGGTTATTCATCTA+TGG - chr7_2:3879278-3879297 None:intergenic 30.0%
! GACGATCTATTTCAATTTTC+TGG + chr7_2:3879553-3879572 Msa1044830:CDS 30.0%
TTCAACAAAGCAAAACAATG+TGG - chr7_2:3877685-3877704 None:intergenic 30.0%
ATTACTTAGGCTATGTCTTT+AGG - chr7_2:3877774-3877793 None:intergenic 30.0%
AGTTTCGATTATAGTGACTA+GGG - chr7_2:3877982-3878001 None:intergenic 30.0%
TAGTTTCGATTATAGTGACT+AGG - chr7_2:3877983-3878002 None:intergenic 30.0%
TCACTATAATCGAAACTACT+TGG + chr7_2:3877985-3878004 Msa1044830:intron 30.0%
! TTTTCTTTTCGGTACAAAAG+AGG + chr7_2:3878246-3878265 Msa1044830:intron 30.0%
! TTTCTTTTCGGTACAAAAGA+GGG + chr7_2:3878247-3878266 Msa1044830:intron 30.0%
! TTCTTTTTACGATATGTCCA+GGG - chr7_2:3878327-3878346 None:intergenic 30.0%
CTTTAGTTGTACTAATGTTG+AGG - chr7_2:3878374-3878393 None:intergenic 30.0%
CTCAACATTAGTACAACTAA+AGG + chr7_2:3878372-3878391 Msa1044830:intron 30.0%
! TTTAAATTTCTGAAGGGAGA+TGG - chr7_2:3878686-3878705 None:intergenic 30.0%
!!! GGCTTGTTTTAAATTTCTGA+AGG - chr7_2:3878693-3878712 None:intergenic 30.0%
ATTGTTGGAAATCAAAGTAG+GGG - chr7_2:3878891-3878910 None:intergenic 30.0%
GTATTGTTGGAAATCAAAGT+AGG - chr7_2:3878893-3878912 None:intergenic 30.0%
AATGATGACACTTGTATTGT+TGG - chr7_2:3878906-3878925 None:intergenic 30.0%
TATTTCAAGCATCAACTAGA+TGG + chr7_2:3879132-3879151 Msa1044830:intron 30.0%
AGCAGAACTTCAAAGATTTA+TGG + chr7_2:3879165-3879184 Msa1044830:intron 30.0%
GCAGAACTTCAAAGATTTAT+GGG + chr7_2:3879166-3879185 Msa1044830:intron 30.0%
! AGCCAATATTTTCAAATTGG+TGG + chr7_2:3879246-3879265 Msa1044830:intron 30.0%
CACCACCAATTTGAAAATAT+TGG - chr7_2:3879251-3879270 None:intergenic 30.0%
! CAATTCTGGTTATTCATCTA+TGG - chr7_2:3879278-3879297 None:intergenic 30.0%
! GACGATCTATTTCAATTTTC+TGG + chr7_2:3879553-3879572 Msa1044830:CDS 30.0%
TCACAAAGAATTCAGAGCAA+GGG + chr7_2:3877360-3877379 Msa1044830:CDS 35.0%
! TTTTAGATTGGGTGTTAGCT+AGG + chr7_2:3877731-3877750 Msa1044830:intron 35.0%
TTTAGATTGGGTGTTAGCTA+GGG + chr7_2:3877732-3877751 Msa1044830:intron 35.0%
TAGCCTAAGTAATGCTCATT+TGG + chr7_2:3877781-3877800 Msa1044830:intron 35.0%
AAGCCAAATGAGCATTACTT+AGG - chr7_2:3877787-3877806 None:intergenic 35.0%
ACCTACATCTTGTAATGTGT+GGG - chr7_2:3877904-3877923 None:intergenic 35.0%
GTTTCGATTATAGTGACTAG+GGG - chr7_2:3877981-3878000 None:intergenic 35.0%
!!! ACCTTACAAACTGGTTTTGT+GGG + chr7_2:3878126-3878145 Msa1044830:intron 35.0%
! CTTCTTTTTACGATATGTCC+AGG - chr7_2:3878328-3878347 None:intergenic 35.0%
! GTTGATTGAGAGCCTATTTT+TGG - chr7_2:3878410-3878429 None:intergenic 35.0%
! TAGGCTCTCAATCAACATTT+TGG + chr7_2:3878414-3878433 Msa1044830:intron 35.0%
! AGGCTCTCAATCAACATTTT+GGG + chr7_2:3878415-3878434 Msa1044830:intron 35.0%
GTTCTCTCCTATCAAAACTA+AGG + chr7_2:3878595-3878614 Msa1044830:intron 35.0%
!!! GCATGTACCTTAGTTTTGAT+AGG - chr7_2:3878605-3878624 None:intergenic 35.0%
GATGGATCAAACGTTACATT+AGG - chr7_2:3878668-3878687 None:intergenic 35.0%
AAATATGATACTTGCAAGGG+AGG - chr7_2:3878738-3878757 None:intergenic 35.0%
TTGTTGGAAATCAAAGTAGG+GGG - chr7_2:3878890-3878909 None:intergenic 35.0%
CTCAACTGAGTCTGTAAATA+AGG - chr7_2:3879041-3879060 None:intergenic 35.0%
CTTATTTACAGACTCAGTTG+AGG + chr7_2:3879039-3879058 Msa1044830:intron 35.0%
! TATGACGTTTTGCACTATTG+AGG + chr7_2:3879089-3879108 Msa1044830:intron 35.0%
TCTGGTTATTCATCTATGGT+TGG - chr7_2:3879274-3879293 None:intergenic 35.0%
!! ACCAGAATTGCTTTTCATTG+TGG + chr7_2:3879288-3879307 Msa1044830:intron 35.0%
ACCACAATGAAAAGCAATTC+TGG - chr7_2:3879292-3879311 None:intergenic 35.0%
TCATAGAAAATCGTGAGGTA+AGG - chr7_2:3879364-3879383 None:intergenic 35.0%
ATGACAACAATGACAATGCT+AGG - chr7_2:3879445-3879464 None:intergenic 35.0%
GTCATTGTTGTCATTGTTTC+AGG + chr7_2:3879451-3879470 Msa1044830:intron 35.0%
AAAATCCAGCTTTCGAGATA+TGG - chr7_2:3879533-3879552 None:intergenic 35.0%
!! TCAATTTTCTGGTGTTTGCA+AGG + chr7_2:3879564-3879583 Msa1044830:CDS 35.0%
TTGAACAAGTAGTGGTGATT+GGG - chr7_2:3879635-3879654 None:intergenic 35.0%
TTTGAACAAGTAGTGGTGAT+TGG - chr7_2:3879636-3879655 None:intergenic 35.0%
GAAGTTGTTTGAACAAGTAG+TGG - chr7_2:3879643-3879662 None:intergenic 35.0%
TCACAAAGAATTCAGAGCAA+GGG + chr7_2:3877360-3877379 Msa1044830:CDS 35.0%
! TTTTAGATTGGGTGTTAGCT+AGG + chr7_2:3877731-3877750 Msa1044830:intron 35.0%
TTTAGATTGGGTGTTAGCTA+GGG + chr7_2:3877732-3877751 Msa1044830:intron 35.0%
TAGCCTAAGTAATGCTCATT+TGG + chr7_2:3877781-3877800 Msa1044830:intron 35.0%
AAGCCAAATGAGCATTACTT+AGG - chr7_2:3877787-3877806 None:intergenic 35.0%
ACCTACATCTTGTAATGTGT+GGG - chr7_2:3877904-3877923 None:intergenic 35.0%
GTTTCGATTATAGTGACTAG+GGG - chr7_2:3877981-3878000 None:intergenic 35.0%
!!! ACCTTACAAACTGGTTTTGT+GGG + chr7_2:3878126-3878145 Msa1044830:intron 35.0%
! CTTCTTTTTACGATATGTCC+AGG - chr7_2:3878328-3878347 None:intergenic 35.0%
! GTTGATTGAGAGCCTATTTT+TGG - chr7_2:3878410-3878429 None:intergenic 35.0%
! TAGGCTCTCAATCAACATTT+TGG + chr7_2:3878414-3878433 Msa1044830:intron 35.0%
! AGGCTCTCAATCAACATTTT+GGG + chr7_2:3878415-3878434 Msa1044830:intron 35.0%
GTTCTCTCCTATCAAAACTA+AGG + chr7_2:3878595-3878614 Msa1044830:intron 35.0%
!!! GCATGTACCTTAGTTTTGAT+AGG - chr7_2:3878605-3878624 None:intergenic 35.0%
GATGGATCAAACGTTACATT+AGG - chr7_2:3878668-3878687 None:intergenic 35.0%
AAATATGATACTTGCAAGGG+AGG - chr7_2:3878738-3878757 None:intergenic 35.0%
TTGTTGGAAATCAAAGTAGG+GGG - chr7_2:3878890-3878909 None:intergenic 35.0%
CTCAACTGAGTCTGTAAATA+AGG - chr7_2:3879041-3879060 None:intergenic 35.0%
CTTATTTACAGACTCAGTTG+AGG + chr7_2:3879039-3879058 Msa1044830:intron 35.0%
! TATGACGTTTTGCACTATTG+AGG + chr7_2:3879089-3879108 Msa1044830:intron 35.0%
TCTGGTTATTCATCTATGGT+TGG - chr7_2:3879274-3879293 None:intergenic 35.0%
!! ACCAGAATTGCTTTTCATTG+TGG + chr7_2:3879288-3879307 Msa1044830:intron 35.0%
ACCACAATGAAAAGCAATTC+TGG - chr7_2:3879292-3879311 None:intergenic 35.0%
TCATAGAAAATCGTGAGGTA+AGG - chr7_2:3879364-3879383 None:intergenic 35.0%
ATGACAACAATGACAATGCT+AGG - chr7_2:3879445-3879464 None:intergenic 35.0%
GTCATTGTTGTCATTGTTTC+AGG + chr7_2:3879451-3879470 Msa1044830:intron 35.0%
AAAATCCAGCTTTCGAGATA+TGG - chr7_2:3879533-3879552 None:intergenic 35.0%
!! TCAATTTTCTGGTGTTTGCA+AGG + chr7_2:3879564-3879583 Msa1044830:CDS 35.0%
TTGAACAAGTAGTGGTGATT+GGG - chr7_2:3879635-3879654 None:intergenic 35.0%
TTTGAACAAGTAGTGGTGAT+TGG - chr7_2:3879636-3879655 None:intergenic 35.0%
GAAGTTGTTTGAACAAGTAG+TGG - chr7_2:3879643-3879662 None:intergenic 35.0%
CTCACAAAGAATTCAGAGCA+AGG + chr7_2:3877359-3877378 Msa1044830:CDS 40.0%
! GTGATGGAGATGATTCTAAG+AGG + chr7_2:3877384-3877403 Msa1044830:CDS 40.0%
TCCTCAATCATCGTCAAGTA+CGG + chr7_2:3877415-3877434 Msa1044830:CDS 40.0%
TTAGATTGGGTGTTAGCTAG+GGG + chr7_2:3877733-3877752 Msa1044830:intron 40.0%
TCCTGATCGCATATCTAAGA+TGG + chr7_2:3877844-3877863 Msa1044830:intron 40.0%
ACCATCTTAGATATGCGATC+AGG - chr7_2:3877848-3877867 None:intergenic 40.0%
ACCCACACATTACAAGATGT+AGG + chr7_2:3877900-3877919 Msa1044830:intron 40.0%
CACCTACATCTTGTAATGTG+TGG - chr7_2:3877905-3877924 None:intergenic 40.0%
GATTATAGTGACTAGGGGAA+GGG - chr7_2:3877976-3877995 None:intergenic 40.0%
ATCTCATTGCACCCAGAATA+AGG - chr7_2:3878041-3878060 None:intergenic 40.0%
GCATTTCTCACCTTACAAAC+TGG + chr7_2:3878117-3878136 Msa1044830:intron 40.0%
!!! CACCTTACAAACTGGTTTTG+TGG + chr7_2:3878125-3878144 Msa1044830:intron 40.0%
!!! CCTTACAAACTGGTTTTGTG+GGG + chr7_2:3878127-3878146 Msa1044830:intron 40.0%
AACTGAAGGCAAGCATAACA+TGG - chr7_2:3878219-3878238 None:intergenic 40.0%
AGTCTATGAAGCTCACTATG+AGG + chr7_2:3878346-3878365 Msa1044830:intron 40.0%
! GTGGCATATTTGTCGTCTTT+TGG - chr7_2:3878485-3878504 None:intergenic 40.0%
CAAATATGCCACACCAAAAC+AGG + chr7_2:3878493-3878512 Msa1044830:intron 40.0%
! ACTTTTCATGCCGAAATCTG+GGG - chr7_2:3878627-3878646 None:intergenic 40.0%
! CACTTTTCATGCCGAAATCT+GGG - chr7_2:3878628-3878647 None:intergenic 40.0%
! ACACTTTTCATGCCGAAATC+TGG - chr7_2:3878629-3878648 None:intergenic 40.0%
! GGAGAGATGTAATGATGATG+AGG - chr7_2:3878714-3878733 None:intergenic 40.0%
ACCAATATAGATAGTCCCCA+TGG + chr7_2:3878793-3878812 Msa1044830:intron 40.0%
CCAATATAGATAGTCCCCAT+GGG + chr7_2:3878794-3878813 Msa1044830:intron 40.0%
! GTTTGGTTGTTTCGTTGTGT+GGG + chr7_2:3878990-3879009 Msa1044830:intron 40.0%
!! TGTTGACTTCAGCGAACTTT+CGG + chr7_2:3879492-3879511 Msa1044830:CDS 40.0%
TGATACCATATCTCGAAAGC+TGG + chr7_2:3879525-3879544 Msa1044830:CDS 40.0%
CTCACAAAGAATTCAGAGCA+AGG + chr7_2:3877359-3877378 Msa1044830:CDS 40.0%
! GTGATGGAGATGATTCTAAG+AGG + chr7_2:3877384-3877403 Msa1044830:CDS 40.0%
TCCTCAATCATCGTCAAGTA+CGG + chr7_2:3877415-3877434 Msa1044830:CDS 40.0%
TTAGATTGGGTGTTAGCTAG+GGG + chr7_2:3877733-3877752 Msa1044830:intron 40.0%
TCCTGATCGCATATCTAAGA+TGG + chr7_2:3877844-3877863 Msa1044830:intron 40.0%
ACCATCTTAGATATGCGATC+AGG - chr7_2:3877848-3877867 None:intergenic 40.0%
ACCCACACATTACAAGATGT+AGG + chr7_2:3877900-3877919 Msa1044830:intron 40.0%
CACCTACATCTTGTAATGTG+TGG - chr7_2:3877905-3877924 None:intergenic 40.0%
GATTATAGTGACTAGGGGAA+GGG - chr7_2:3877976-3877995 None:intergenic 40.0%
ATCTCATTGCACCCAGAATA+AGG - chr7_2:3878041-3878060 None:intergenic 40.0%
GCATTTCTCACCTTACAAAC+TGG + chr7_2:3878117-3878136 Msa1044830:intron 40.0%
!!! CACCTTACAAACTGGTTTTG+TGG + chr7_2:3878125-3878144 Msa1044830:intron 40.0%
!!! CCTTACAAACTGGTTTTGTG+GGG + chr7_2:3878127-3878146 Msa1044830:intron 40.0%
AACTGAAGGCAAGCATAACA+TGG - chr7_2:3878219-3878238 None:intergenic 40.0%
AGTCTATGAAGCTCACTATG+AGG + chr7_2:3878346-3878365 Msa1044830:intron 40.0%
! GTGGCATATTTGTCGTCTTT+TGG - chr7_2:3878485-3878504 None:intergenic 40.0%
CAAATATGCCACACCAAAAC+AGG + chr7_2:3878493-3878512 Msa1044830:intron 40.0%
! ACTTTTCATGCCGAAATCTG+GGG - chr7_2:3878627-3878646 None:intergenic 40.0%
! CACTTTTCATGCCGAAATCT+GGG - chr7_2:3878628-3878647 None:intergenic 40.0%
! ACACTTTTCATGCCGAAATC+TGG - chr7_2:3878629-3878648 None:intergenic 40.0%
! GGAGAGATGTAATGATGATG+AGG - chr7_2:3878714-3878733 None:intergenic 40.0%
ACCAATATAGATAGTCCCCA+TGG + chr7_2:3878793-3878812 Msa1044830:intron 40.0%
CCAATATAGATAGTCCCCAT+GGG + chr7_2:3878794-3878813 Msa1044830:intron 40.0%
! GTTTGGTTGTTTCGTTGTGT+GGG + chr7_2:3878990-3879009 Msa1044830:intron 40.0%
!! TGTTGACTTCAGCGAACTTT+CGG + chr7_2:3879492-3879511 Msa1044830:CDS 40.0%
TGATACCATATCTCGAAAGC+TGG + chr7_2:3879525-3879544 Msa1044830:CDS 40.0%
AATTCAGAGCAAGGGAGTGA+TGG + chr7_2:3877368-3877387 Msa1044830:CDS 45.0%
ACCGTACTTGACGATGATTG+AGG - chr7_2:3877419-3877438 None:intergenic 45.0%
GCAGTTGAACCATGACTGAT+AGG + chr7_2:3877635-3877654 Msa1044830:intron 45.0%
CGATTATAGTGACTAGGGGA+AGG - chr7_2:3877977-3877996 None:intergenic 45.0%
ACTACTTGGAGCTTCCTTCA+TGG + chr7_2:3877999-3878018 Msa1044830:intron 45.0%
ACCAACGCCTTCCTTATTCT+GGG + chr7_2:3878027-3878046 Msa1044830:intron 45.0%
CATTGCACCCAGAATAAGGA+AGG - chr7_2:3878037-3878056 None:intergenic 45.0%
CCCCACAAAACCAGTTTGTA+AGG - chr7_2:3878130-3878149 None:intergenic 45.0%
!!! ACAAACTGGTTTTGTGGGGT+TGG + chr7_2:3878131-3878150 Msa1044830:intron 45.0%
!!! CAAACTGGTTTTGTGGGGTT+GGG + chr7_2:3878132-3878151 Msa1044830:intron 45.0%
!! TAGTGGGGTGTTTCCTGTTT+TGG - chr7_2:3878509-3878528 None:intergenic 45.0%
AAGGTACATGCCCCAGATTT+CGG + chr7_2:3878614-3878633 Msa1044830:intron 45.0%
TATGATACTTGCAAGGGAGG+TGG - chr7_2:3878735-3878754 None:intergenic 45.0%
TTAAGCTTCATCCATCCACC+AGG + chr7_2:3878759-3878778 Msa1044830:intron 45.0%
TAAGCTTCATCCATCCACCA+GGG + chr7_2:3878760-3878779 Msa1044830:intron 45.0%
!! TATTGGTTCTAAGAGACCCC+TGG - chr7_2:3878780-3878799 None:intergenic 45.0%
CCCATGGGGACTATCTATAT+TGG - chr7_2:3878797-3878816 None:intergenic 45.0%
! CGTTTGGTTGTTTCGTTGTG+TGG + chr7_2:3878989-3879008 Msa1044830:intron 45.0%
TTCGTTGTGTGGGATTGTGA+TGG + chr7_2:3879000-3879019 Msa1044830:intron 45.0%
! TTTCTGGTGTTTGCAAGGAG+TGG + chr7_2:3879569-3879588 Msa1044830:CDS 45.0%
AATTCAGAGCAAGGGAGTGA+TGG + chr7_2:3877368-3877387 Msa1044830:CDS 45.0%
ACCGTACTTGACGATGATTG+AGG - chr7_2:3877419-3877438 None:intergenic 45.0%
GCAGTTGAACCATGACTGAT+AGG + chr7_2:3877635-3877654 Msa1044830:intron 45.0%
CGATTATAGTGACTAGGGGA+AGG - chr7_2:3877977-3877996 None:intergenic 45.0%
ACTACTTGGAGCTTCCTTCA+TGG + chr7_2:3877999-3878018 Msa1044830:intron 45.0%
ACCAACGCCTTCCTTATTCT+GGG + chr7_2:3878027-3878046 Msa1044830:intron 45.0%
CATTGCACCCAGAATAAGGA+AGG - chr7_2:3878037-3878056 None:intergenic 45.0%
CCCCACAAAACCAGTTTGTA+AGG - chr7_2:3878130-3878149 None:intergenic 45.0%
!!! ACAAACTGGTTTTGTGGGGT+TGG + chr7_2:3878131-3878150 Msa1044830:intron 45.0%
!!! CAAACTGGTTTTGTGGGGTT+GGG + chr7_2:3878132-3878151 Msa1044830:intron 45.0%
!! TAGTGGGGTGTTTCCTGTTT+TGG - chr7_2:3878509-3878528 None:intergenic 45.0%
AAGGTACATGCCCCAGATTT+CGG + chr7_2:3878614-3878633 Msa1044830:intron 45.0%
TATGATACTTGCAAGGGAGG+TGG - chr7_2:3878735-3878754 None:intergenic 45.0%
TTAAGCTTCATCCATCCACC+AGG + chr7_2:3878759-3878778 Msa1044830:intron 45.0%
TAAGCTTCATCCATCCACCA+GGG + chr7_2:3878760-3878779 Msa1044830:intron 45.0%
!! TATTGGTTCTAAGAGACCCC+TGG - chr7_2:3878780-3878799 None:intergenic 45.0%
CCCATGGGGACTATCTATAT+TGG - chr7_2:3878797-3878816 None:intergenic 45.0%
! CGTTTGGTTGTTTCGTTGTG+TGG + chr7_2:3878989-3879008 Msa1044830:intron 45.0%
TTCGTTGTGTGGGATTGTGA+TGG + chr7_2:3879000-3879019 Msa1044830:intron 45.0%
! TTTCTGGTGTTTGCAAGGAG+TGG + chr7_2:3879569-3879588 Msa1044830:CDS 45.0%
!! AAATTTGAAAAAATATAAAT+TGG + chr7_2:3877595-3877614 Msa1044830:intron 5.0%
!! AATTTGAAAAAATATAAATT+GGG + chr7_2:3877596-3877615 Msa1044830:intron 5.0%
!! AAATTTGAAAAAATATAAAT+TGG + chr7_2:3877595-3877614 Msa1044830:intron 5.0%
!! AATTTGAAAAAATATAAATT+GGG + chr7_2:3877596-3877615 Msa1044830:intron 5.0%
GTGCAAAGTCGTGTACGTGA+GGG + chr7_2:3877922-3877941 Msa1044830:intron 50.0%
TGCAAAGTCGTGTACGTGAG+GGG + chr7_2:3877923-3877942 Msa1044830:intron 50.0%
!! CAGAATAAGGAAGGCGTTGG+TGG - chr7_2:3878028-3878047 None:intergenic 50.0%
CACCAACGCCTTCCTTATTC+TGG + chr7_2:3878026-3878045 Msa1044830:intron 50.0%
! ACCCAGAATAAGGAAGGCGT+TGG - chr7_2:3878031-3878050 None:intergenic 50.0%
ATTCTTAGGCATGCAAGCCC+TGG + chr7_2:3878307-3878326 Msa1044830:intron 50.0%
!!! GGGTGTTTCCTGTTTTGGTG+TGG - chr7_2:3878504-3878523 None:intergenic 50.0%
AAGCTTCATCCATCCACCAG+GGG + chr7_2:3878761-3878780 Msa1044830:intron 50.0%
GTGCAAAGTCGTGTACGTGA+GGG + chr7_2:3877922-3877941 Msa1044830:intron 50.0%
TGCAAAGTCGTGTACGTGAG+GGG + chr7_2:3877923-3877942 Msa1044830:intron 50.0%
!! CAGAATAAGGAAGGCGTTGG+TGG - chr7_2:3878028-3878047 None:intergenic 50.0%
CACCAACGCCTTCCTTATTC+TGG + chr7_2:3878026-3878045 Msa1044830:intron 50.0%
! ACCCAGAATAAGGAAGGCGT+TGG - chr7_2:3878031-3878050 None:intergenic 50.0%
ATTCTTAGGCATGCAAGCCC+TGG + chr7_2:3878307-3878326 Msa1044830:intron 50.0%
!!! GGGTGTTTCCTGTTTTGGTG+TGG - chr7_2:3878504-3878523 None:intergenic 50.0%
AAGCTTCATCCATCCACCAG+GGG + chr7_2:3878761-3878780 Msa1044830:intron 50.0%
GGTGCAAAGTCGTGTACGTG+AGG + chr7_2:3877921-3877940 Msa1044830:intron 55.0%
! CTAGGGGAAGGGCGCAATTA+AGG - chr7_2:3877965-3877984 None:intergenic 55.0%
!! GGCGTTGGTGGTTTCCATGA+AGG - chr7_2:3878016-3878035 None:intergenic 55.0%
TCTAAGAGACCCCTGGTGGA+TGG - chr7_2:3878773-3878792 None:intergenic 55.0%
!! TGGTTCTAAGAGACCCCTGG+TGG - chr7_2:3878777-3878796 None:intergenic 55.0%
CTGGTGTTTGCAAGGAGTGG+AGG + chr7_2:3879572-3879591 Msa1044830:CDS 55.0%
!! GCGCGGTAAGCTCGTTTTTC+AGG - chr7_2:3879700-3879719 None:intergenic 55.0%
GGTGCAAAGTCGTGTACGTG+AGG + chr7_2:3877921-3877940 Msa1044830:intron 55.0%
! CTAGGGGAAGGGCGCAATTA+AGG - chr7_2:3877965-3877984 None:intergenic 55.0%
!! GGCGTTGGTGGTTTCCATGA+AGG - chr7_2:3878016-3878035 None:intergenic 55.0%
TCTAAGAGACCCCTGGTGGA+TGG - chr7_2:3878773-3878792 None:intergenic 55.0%
!! TGGTTCTAAGAGACCCCTGG+TGG - chr7_2:3878777-3878796 None:intergenic 55.0%
CTGGTGTTTGCAAGGAGTGG+AGG + chr7_2:3879572-3879591 Msa1044830:CDS 55.0%
!! GCGCGGTAAGCTCGTTTTTC+AGG - chr7_2:3879700-3879719 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 3877341 3879727 3877341 ID=Msa1044830;Name=Msa1044830
chr7_2 mRNA 3877341 3879727 3877341 ID=Msa1044830-mRNA-1;Parent=Msa1044830;Name=Msa1044830-mRNA-1;_AED=0.59;_eAED=1.00;_QI=0|0|0|0.5|0|0|2|0|116
chr7_2 exon 3877341 3877436 3877341 ID=Msa1044830-mRNA-1:exon:955;Parent=Msa1044830-mRNA-1
chr7_2 exon 3879473 3879727 3879473 ID=Msa1044830-mRNA-1:exon:956;Parent=Msa1044830-mRNA-1
chr7_2 CDS 3877341 3877436 3877341 ID=Msa1044830-mRNA-1:cds;Parent=Msa1044830-mRNA-1
chr7_2 CDS 3879473 3879727 3879473 ID=Msa1044830-mRNA-1:cds;Parent=Msa1044830-mRNA-1
Gene Sequence

>Msa1044830

ATGCAAGTTGACAAGATGCTCACAAAGAATTCAGAGCAAGGGAGTGATGGAGATGATTCTAAGAGGTCTATTGTTCCTCAATCATCGTCAAGTACGGTAAAGAAGCGAAAAGTGTTGTTGACTTCAGCGAACTTTCGGATAATGTACTTGATACCATATCTCGAAAGCTGGATTTTGACGATCTATTTCAATTTTCTGGTGTTTGCAAGGAGTGGAGGAGAGTTCAAAAAATTTATTGGAGAAGTTTCATGGTATCCCAATCACCACTACTTGTTCAAACAACTTCATATGCAAAGAAATTTTGTTCTTTTTATAGCATACCTGAAAAACGAGCTTACCGCGCTAAGATGA

Protein sequence

>Msa1044830

MQVDKMLTKNSEQGSDGDDSKRSIVPQSSSSTVKKRKVLLTSANFRIMYLIPYLESWILTIYFNFLVFARSGGEFKKFIGEVSWYPNHHYLFKQLHMQRNFVLFIAYLKNELTALR*