Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0930670 | AFK44756.1 | 71.212 | 198 | 33 | 3 | 58 | 237 | 208 | 399 | 9.82e-79 | 253 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0930670 | sp|Q9LSE7|B561C_ARATH | 39.331 | 239 | 105 | 7 | 15 | 228 | 168 | 391 | 4.20e-45 | 159 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0795420 | Msa0930670 | 0.921999 | 1.736339e-88 | -8.615850e-47 |
Msa0795430 | Msa0930670 | 0.852655 | 4.003081e-61 | -8.615850e-47 |
Msa0575020 | Msa0930670 | 0.918316 | 1.810197e-86 | -8.615850e-47 |
Msa0930670 | Msa1224750 | 0.975302 | 1.052910e-139 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0930670 | MtrunA17_Chr2g0290131 | 71.212 | 198 | 33 | 3 | 58 | 237 | 208 | 399 | 1.17e-82 | 253 |
Msa0930670 | MtrunA17_Chr2g0278181 | 54.950 | 202 | 66 | 4 | 53 | 235 | 111 | 306 | 3.43e-56 | 182 |
Msa0930670 | MtrunA17_Chr4g0076051 | 55.779 | 199 | 63 | 4 | 56 | 235 | 203 | 395 | 1.31e-55 | 183 |
Msa0930670 | MtrunA17_Chr7g0234191 | 43.011 | 186 | 82 | 3 | 75 | 242 | 264 | 443 | 5.24e-35 | 130 |
Msa0930670 | MtrunA17_Chr5g0447771 | 32.597 | 181 | 99 | 5 | 73 | 234 | 258 | 434 | 2.85e-21 | 92.4 |
Msa0930670 | MtrunA17_Chr5g0444651 | 34.177 | 158 | 80 | 5 | 78 | 216 | 237 | 389 | 6.95e-21 | 91.3 |
Msa0930670 | MtrunA17_Chr3g0101961 | 30.189 | 212 | 119 | 6 | 35 | 222 | 171 | 377 | 1.37e-17 | 81.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0930670 | AT3G25290.1 | 39.331 | 239 | 105 | 7 | 15 | 228 | 168 | 391 | 4.27e-46 | 159 |
Msa0930670 | AT3G25290.2 | 39.331 | 239 | 105 | 7 | 15 | 228 | 168 | 391 | 4.27e-46 | 159 |
Msa0930670 | AT5G47530.1 | 41.584 | 202 | 89 | 3 | 56 | 239 | 204 | 394 | 2.26e-43 | 152 |
Msa0930670 | AT4G17280.1 | 42.347 | 196 | 84 | 3 | 56 | 233 | 212 | 396 | 4.72e-42 | 148 |
Msa0930670 | AT5G35735.1 | 39.423 | 208 | 85 | 6 | 56 | 235 | 204 | 398 | 2.84e-37 | 136 |
Msa0930670 | AT4G12980.1 | 39.037 | 187 | 85 | 5 | 55 | 223 | 213 | 388 | 3.66e-37 | 135 |
Msa0930670 | AT3G59070.1 | 33.143 | 175 | 86 | 4 | 56 | 208 | 207 | 372 | 4.08e-20 | 89.7 |
Msa0930670 | AT2G04850.1 | 28.415 | 183 | 100 | 5 | 73 | 232 | 223 | 397 | 1.35e-17 | 82.0 |
Find 159 sgRNAs with CRISPR-Local
Find 315 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GACAACCTCTCACATATTTA+AGG | 0.143428 | 6_2:+79723217 | None:intergenic |
ACTTTCCACTCACCCGTTAA+TGG | 0.208512 | 6_2:+79725221 | None:intergenic |
CTCAAAATTAAAGCATGTTT+TGG | 0.214988 | 6_2:-79723849 | Msa0930670:three_prime_UTR |
TTATAGATTGGGTTCTATAT+TGG | 0.218702 | 6_2:-79723608 | Msa0930670:three_prime_UTR |
CTTGGGGATCTTGATGCCTT+TGG | 0.236519 | 6_2:-79726704 | Msa0930670:CDS |
TCTTGAAAGATCCTCGTTAA+TGG | 0.242729 | 6_2:+79724582 | None:intergenic |
CAGCGGATCGCTACGATAAC+TGG | 0.249372 | 6_2:-79725946 | Msa0930670:CDS |
ATAAGTCACGAAATATATTT+CGG | 0.253236 | 6_2:-79723330 | Msa0930670:three_prime_UTR |
AGCATCGTCAACATCTTTAA+AGG | 0.254895 | 6_2:-79725992 | Msa0930670:CDS |
TAGAGGGACAATGGGATATT+TGG | 0.257183 | 6_2:-79723778 | Msa0930670:three_prime_UTR |
CTTTAAAGGGTTTGAGGCCT+TGG | 0.269499 | 6_2:-79725978 | Msa0930670:CDS |
TATAGATTGGGTTCTATATT+GGG | 0.279264 | 6_2:-79723607 | Msa0930670:three_prime_UTR |
TAAGTCACGAAATATATTTC+GGG | 0.283711 | 6_2:-79723329 | Msa0930670:three_prime_UTR |
TTGGGGATCTTGATGCCTTT+GGG | 0.305249 | 6_2:-79726703 | Msa0930670:CDS |
TCTGACTATGGAACTGATCT+TGG | 0.318574 | 6_2:-79728695 | Msa0930670:CDS |
CTTCTGCCTTGGAACCCTTC+AGG | 0.326027 | 6_2:-79726497 | Msa0930670:intron |
GATGGCCTAATAGTTGGATT+AGG | 0.334457 | 6_2:+79723480 | None:intergenic |
CAACAGGCAGTGGCGGCATT+TGG | 0.339764 | 6_2:+79724605 | None:intergenic |
TATGTCCATCTAACTCAAAA+TGG | 0.345856 | 6_2:+79724876 | None:intergenic |
TAATGAAGCCAGGAAAATTA+AGG | 0.352059 | 6_2:+79725108 | None:intergenic |
GGGTGGCATTGCTGTACTTT+TGG | 0.352817 | 6_2:-79725891 | Msa0930670:CDS |
AGAAGAAGGAACCGATAATA+TGG | 0.359308 | 6_2:-79724708 | Msa0930670:three_prime_UTR |
GAACTTACCTAAATTCTATT+AGG | 0.360006 | 6_2:+79724550 | None:intergenic |
GGCTTCATTATAATGTGTAT+TGG | 0.364749 | 6_2:-79725095 | Msa0930670:three_prime_UTR |
GCCTATATAGTTGGTGTTGT+TGG | 0.365208 | 6_2:-79726598 | Msa0930670:CDS |
TTAGCTTACAATTAACTGAT+AGG | 0.365879 | 6_2:+79723276 | None:intergenic |
ATGACATGATACTTATAGAT+TGG | 0.369608 | 6_2:-79723620 | Msa0930670:three_prime_UTR |
TGTGCCCTAATCCAACTATT+AGG | 0.379826 | 6_2:-79723485 | Msa0930670:three_prime_UTR |
GTTGACTTTCTCTCCATTAA+CGG | 0.380344 | 6_2:-79725234 | Msa0930670:three_prime_UTR |
GAAGAAAACCACCATATTAT+CGG | 0.380598 | 6_2:+79724697 | None:intergenic |
GGAACAAATGGTGATGGATA+TGG | 0.390681 | 6_2:-79725803 | Msa0930670:CDS |
AGTGTTCCACCATTGTTTGA+TGG | 0.394571 | 6_2:-79723414 | Msa0930670:three_prime_UTR |
AAGTTGTTAATGATTTCATT+AGG | 0.396201 | 6_2:-79723542 | Msa0930670:three_prime_UTR |
TCTGTCTTTCATTAGTAGCT+TGG | 0.401610 | 6_2:+79723821 | None:intergenic |
TTACTGGAACCTTTACCATT+GGG | 0.402298 | 6_2:-79726041 | Msa0930670:CDS |
CGTGAAGCTTCAATTTATAC+AGG | 0.408841 | 6_2:-79725631 | Msa0930670:intron |
GCATCGTCAACATCTTTAAA+GGG | 0.410141 | 6_2:-79725991 | Msa0930670:CDS |
CACCGGCATTATTGCAGCAT+TGG | 0.411749 | 6_2:-79725912 | Msa0930670:CDS |
TCTTTAACTATCTATCACTA+TGG | 0.414438 | 6_2:-79725758 | Msa0930670:CDS |
CATGTACTTGCAGCTATTGA+TGG | 0.416147 | 6_2:+79725269 | None:intergenic |
GCAACAGATGGCCTAATAGT+TGG | 0.417698 | 6_2:+79723474 | None:intergenic |
TTGTTGAATGCAGTGAGCTT+GGG | 0.419751 | 6_2:-79726721 | Msa0930670:intron |
CAACATCTTTAAAGGGTTTG+AGG | 0.424624 | 6_2:-79725984 | Msa0930670:CDS |
CACATGGATCATTGTGATCA+AGG | 0.425681 | 6_2:-79725861 | Msa0930670:CDS |
ATAAAATAAAGAGCAAGAAT+TGG | 0.426186 | 6_2:+79723378 | None:intergenic |
AATGCCAGGCATCTCATAGA+AGG | 0.427520 | 6_2:+79724633 | None:intergenic |
TAAAGGGTTTGAGGCCTTGG+AGG | 0.436696 | 6_2:-79725975 | Msa0930670:CDS |
ACCGGCATTATTGCAGCATT+GGG | 0.442443 | 6_2:-79725911 | Msa0930670:CDS |
AGCTCTATTTCTATCTGAAA+AGG | 0.445760 | 6_2:-79725133 | Msa0930670:three_prime_UTR |
ATGGCCTAATAGTTGGATTA+GGG | 0.445772 | 6_2:+79723481 | None:intergenic |
TTGACTTTCTCTCCATTAAC+GGG | 0.446899 | 6_2:-79725233 | Msa0930670:intron |
ATTACTGGAACCTTTACCAT+TGG | 0.446900 | 6_2:-79726042 | Msa0930670:CDS |
AGATCCTCGTTAATGGCAAC+AGG | 0.447502 | 6_2:+79724589 | None:intergenic |
AACAAGTTGCAAGGAATGAA+TGG | 0.449100 | 6_2:-79725824 | Msa0930670:CDS |
CCTTCACTGATGATAAAGTA+TGG | 0.449579 | 6_2:+79727547 | None:intergenic |
GAAAATATCACACATTCTAA+TGG | 0.451109 | 6_2:+79728716 | None:intergenic |
TAGGTTTGAGAGAATGACTA+TGG | 0.451333 | 6_2:-79723523 | Msa0930670:three_prime_UTR |
TAATGTGTATTGGAATCGCT+TGG | 0.452334 | 6_2:-79725085 | Msa0930670:three_prime_UTR |
TGACATGATACTTATAGATT+GGG | 0.452945 | 6_2:-79723619 | Msa0930670:three_prime_UTR |
TCTCAACCTCACCAGCTGAT+AGG | 0.454244 | 6_2:+79725704 | None:intergenic |
AGCTATAGTTTACTTGCAAA+AGG | 0.459092 | 6_2:+79723870 | None:intergenic |
TGTACGATGGTGTTTAAACT+TGG | 0.459476 | 6_2:+79723908 | None:intergenic |
GGTTCTATATTGGGCAAAAG+AGG | 0.465154 | 6_2:-79723598 | Msa0930670:three_prime_UTR |
TCCAACAACACCAACTATAT+AGG | 0.465181 | 6_2:+79726597 | None:intergenic |
ATATAGTTGGTGTTGTTGGA+TGG | 0.468787 | 6_2:-79726594 | Msa0930670:CDS |
GGGATCATCCTCTTCTGCCT+TGG | 0.469155 | 6_2:-79726508 | Msa0930670:CDS |
ATGGGGTACCAGTGTCAAGC+TGG | 0.469313 | 6_2:-79726575 | Msa0930670:CDS |
AGAACAAGCACAAATGTTAG+AGG | 0.472788 | 6_2:-79723795 | Msa0930670:three_prime_UTR |
CAATCAGCTGCCTATATAGT+TGG | 0.487496 | 6_2:-79726607 | Msa0930670:CDS |
TATAGTTGGTGTTGTTGGAT+GGG | 0.488603 | 6_2:-79726593 | Msa0930670:CDS |
TTATCATCAGTGAAGGTTCA+AGG | 0.488974 | 6_2:-79727540 | Msa0930670:CDS |
CAACTATATAGGCAGCTGAT+TGG | 0.489184 | 6_2:+79726608 | None:intergenic |
GAGTTGCATCAAGTTGAAGA+TGG | 0.493345 | 6_2:-79723657 | Msa0930670:three_prime_UTR |
TATTCCTTCTATGAGATGCC+TGG | 0.496545 | 6_2:-79724637 | Msa0930670:three_prime_UTR |
AACCTTTACCATTGGGGTGT+CGG | 0.496844 | 6_2:-79726034 | Msa0930670:CDS |
TATGGAACTGATCTTGGATC+AGG | 0.496920 | 6_2:-79728689 | Msa0930670:CDS |
AACAGAGCAAACATACTTTG+TGG | 0.497241 | 6_2:-79723241 | Msa0930670:three_prime_UTR |
TCAAAACAGCAGACCCTGCT+TGG | 0.497546 | 6_2:-79726651 | Msa0930670:CDS |
TCGTTAATGGCAACAGGCAG+TGG | 0.497673 | 6_2:+79724595 | None:intergenic |
TGCACCTATCACTGCAAAAG+TGG | 0.498118 | 6_2:-79723736 | Msa0930670:three_prime_UTR |
AAAGTGGATATCTACAGCTT+TGG | 0.498218 | 6_2:-79723720 | Msa0930670:three_prime_UTR |
ATAGTTAAAGAAGGTTTGAT+CGG | 0.500775 | 6_2:+79725770 | None:intergenic |
TGCAACACCTTTGCAACAGA+TGG | 0.502830 | 6_2:+79723462 | None:intergenic |
ATCCGACACCCCAATGGTAA+AGG | 0.503836 | 6_2:+79726032 | None:intergenic |
AAAGTTTCTATAGATAAAGA+AGG | 0.504229 | 6_2:+79724825 | None:intergenic |
GGCATTTGGCTCATAATGCC+AGG | 0.504404 | 6_2:+79724619 | None:intergenic |
ACAAATGTTAGAGGGACAAT+GGG | 0.506091 | 6_2:-79723786 | Msa0930670:three_prime_UTR |
TTTGAGAGAATGACTATGGT+TGG | 0.507037 | 6_2:-79723519 | Msa0930670:three_prime_UTR |
GGATCAGGCTCGACTGTCCC+TGG | 0.507315 | 6_2:-79728674 | Msa0930670:intron |
AATGTGTATTGGAATCGCTT+GGG | 0.508472 | 6_2:-79725084 | Msa0930670:intron |
GTTCTATATTGGGCAAAAGA+GGG | 0.512150 | 6_2:-79723597 | Msa0930670:three_prime_UTR |
TGAAGCTTCACGAGCAGCCA+CGG | 0.512400 | 6_2:+79725642 | None:intergenic |
CAAGGAATGAATGGAACAAA+TGG | 0.513242 | 6_2:-79725815 | Msa0930670:CDS |
ATTGTTGAATGCAGTGAGCT+TGG | 0.516397 | 6_2:-79726722 | Msa0930670:intron |
CTTCATACTAAGAAAGAAGA+AGG | 0.534068 | 6_2:-79724722 | Msa0930670:three_prime_UTR |
CATTAACAACTTCAACATCA+TGG | 0.537170 | 6_2:+79723553 | None:intergenic |
CACAAATGTTAGAGGGACAA+TGG | 0.540064 | 6_2:-79723787 | Msa0930670:three_prime_UTR |
ATAGTTGGTGTTGTTGGATG+GGG | 0.542051 | 6_2:-79726592 | Msa0930670:CDS |
ACATGAAGGTAAAACCAAGC+AGG | 0.551666 | 6_2:+79726637 | None:intergenic |
CTTCAGACTCTCCTATCAGC+TGG | 0.555801 | 6_2:-79725715 | Msa0930670:CDS |
ACATGGATCATTGTGATCAA+GGG | 0.556201 | 6_2:-79725860 | Msa0930670:CDS |
TGTGATTGCAAGGTACTTGA+AGG | 0.556632 | 6_2:-79726677 | Msa0930670:CDS |
TACTGGAACCTTTACCATTG+GGG | 0.557881 | 6_2:-79726040 | Msa0930670:CDS |
GTCATACCTGAAGGGTTCCA+AGG | 0.560992 | 6_2:+79726491 | None:intergenic |
ATGAATGGAACAAATGGTGA+TGG | 0.561375 | 6_2:-79725809 | Msa0930670:CDS |
GACTCTCCTATCAGCTGGTG+AGG | 0.561561 | 6_2:-79725710 | Msa0930670:exon |
GGCATTATTGCAGCATTGGG+TGG | 0.561938 | 6_2:-79725908 | Msa0930670:CDS |
ATACACATTATAATGAAGCC+AGG | 0.562281 | 6_2:+79725098 | None:intergenic |
GAAGGGTTCCAAGGCAGAAG+AGG | 0.567005 | 6_2:+79726500 | None:intergenic |
ATCCGCTGCAGACACCTCCA+AGG | 0.570140 | 6_2:+79725961 | None:intergenic |
GAAGCTTCACGAGCAGCCAC+GGG | 0.570328 | 6_2:+79725643 | None:intergenic |
TAGTGATAGATAGTTAAAGA+AGG | 0.572632 | 6_2:+79725761 | None:intergenic |
CAAGTTGAAGATGGAACAGA+AGG | 0.575586 | 6_2:-79723648 | Msa0930670:three_prime_UTR |
AAATCTTGTGCAAAATGAGA+AGG | 0.576750 | 6_2:-79727302 | Msa0930670:CDS |
TCCATCTAACTCAAAATGGA+AGG | 0.576928 | 6_2:+79724880 | None:intergenic |
TGGGATATTTGGCACCAGAA+TGG | 0.579107 | 6_2:-79723767 | Msa0930670:three_prime_UTR |
TATTCAACTCATAGAACACT+CGG | 0.580467 | 6_2:-79726529 | Msa0930670:intron |
CTTTAATTGTGCTTCTGATG+AGG | 0.580908 | 6_2:-79724800 | Msa0930670:three_prime_UTR |
GGCCTTGGAGGTGTCTGCAG+CGG | 0.586267 | 6_2:-79725963 | Msa0930670:CDS |
TGTTGAATGCAGTGAGCTTG+GGG | 0.586957 | 6_2:-79726720 | Msa0930670:intron |
CTGAAGAGTACCTTTGATGA+TGG | 0.587300 | 6_2:+79725732 | None:intergenic |
CTTTGGGAGCTGTGATTGCA+AGG | 0.589874 | 6_2:-79726687 | Msa0930670:CDS |
GTCACTTCCCAGCTTGACAC+TGG | 0.590603 | 6_2:+79726567 | None:intergenic |
AACTGGAAGCATGCATACAC+CGG | 0.591645 | 6_2:-79725929 | Msa0930670:CDS |
CTGATTGGCATGTAACATGA+AGG | 0.594508 | 6_2:+79726623 | None:intergenic |
TCAGAGTATGATGCTTAGAG+TGG | 0.595054 | 6_2:-79724905 | Msa0930670:three_prime_UTR |
GTTTGAAGTGTTATCAGACA+TGG | 0.596212 | 6_2:+79725669 | None:intergenic |
TGGGGTACCAGTGTCAAGCT+GGG | 0.597010 | 6_2:-79726574 | Msa0930670:CDS |
TATTAGGCCATCTGTTGCAA+AGG | 0.598187 | 6_2:-79723469 | Msa0930670:three_prime_UTR |
TTCTATATTGGGCAAAAGAG+GGG | 0.600711 | 6_2:-79723596 | Msa0930670:three_prime_UTR |
CCATACTTTATCATCAGTGA+AGG | 0.601838 | 6_2:-79727547 | Msa0930670:CDS |
CATGGATCATTGTGATCAAG+GGG | 0.602789 | 6_2:-79725859 | Msa0930670:CDS |
GTGCTTCTGATGAGGAAGAA+AGG | 0.605953 | 6_2:-79724792 | Msa0930670:three_prime_UTR |
AAAATGTTTCCATCAAACAA+TGG | 0.608622 | 6_2:+79723405 | None:intergenic |
AAATCAGAGAACAAGTTGCA+AGG | 0.608640 | 6_2:-79725833 | Msa0930670:CDS |
ACCCAATGCTGCAATAATGC+CGG | 0.613184 | 6_2:+79725910 | None:intergenic |
AAAGATGTTGACGATGCTGA+TGG | 0.614883 | 6_2:+79725997 | None:intergenic |
AAGGTGTTGCAGATGTCGGA+AGG | 0.614948 | 6_2:-79723450 | Msa0930670:three_prime_UTR |
TTGCGTATCCGACACCCCAA+TGG | 0.617721 | 6_2:+79726026 | None:intergenic |
ACTATGGCCACCATCATCAA+AGG | 0.619655 | 6_2:-79725742 | Msa0930670:CDS |
AAGCTGGGAAGTGACTTAGC+TGG | 0.624386 | 6_2:-79726559 | Msa0930670:intron |
TGCAAAGGTGTTGCAGATGT+CGG | 0.624440 | 6_2:-79723454 | Msa0930670:three_prime_UTR |
GTGGTCCTTAAATATGTGAG+AGG | 0.625201 | 6_2:-79723222 | Msa0930670:three_prime_UTR |
GAACAAGCACAAATGTTAGA+GGG | 0.627687 | 6_2:-79723794 | Msa0930670:three_prime_UTR |
CATGTAATGTCATACCTGAA+GGG | 0.633570 | 6_2:+79726483 | None:intergenic |
GTTGAAGATGGAACAGAAGG+TGG | 0.634859 | 6_2:-79723645 | Msa0930670:three_prime_UTR |
CATGAAGGTAAAACCAAGCA+GGG | 0.639212 | 6_2:+79726638 | None:intergenic |
ATGTTTCCATCAAACAATGG+TGG | 0.641806 | 6_2:+79723408 | None:intergenic |
TAGAATTTGAGGCAGTGGAG+GGG | 0.643151 | 6_2:-79727331 | Msa0930670:intron |
TTAATGGCAACAGGCAGTGG+CGG | 0.648108 | 6_2:+79724598 | None:intergenic |
AGAAGGAACCGATAATATGG+TGG | 0.659981 | 6_2:-79724705 | Msa0930670:three_prime_UTR |
CTTGCAATCACAGCTCCCAA+AGG | 0.665524 | 6_2:+79726688 | None:intergenic |
AAGAGTACCTTTGATGATGG+TGG | 0.669893 | 6_2:+79725735 | None:intergenic |
ATTCAACTCATAGAACACTC+GGG | 0.675546 | 6_2:-79726528 | Msa0930670:intron |
TAACACTTCAAACATGCCCG+TGG | 0.679330 | 6_2:-79725659 | Msa0930670:three_prime_UTR |
AATGGAGAGAAAGTCAACAG+TGG | 0.709474 | 6_2:+79725239 | None:intergenic |
ACTGCCTGTTGCCATTAACG+AGG | 0.709980 | 6_2:-79724593 | Msa0930670:three_prime_UTR |
GAATGACTATGGTTGGACTG+TGG | 0.741878 | 6_2:-79723512 | Msa0930670:three_prime_UTR |
ATATGCAAGAAAGTGTACGA+TGG | 0.777994 | 6_2:+79723895 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAAAAGTATATAAAGTATTA+GGG | - | chr6_2:79723630-79723649 | Msa0930670:three_prime_UTR | 10.0% |
!! | ACAAAAAAAAAAAAAACAAA+TGG | + | chr6_2:79727641-79727660 | None:intergenic | 10.0% |
!!! | CTAAAAGTATATAAAGTATT+AGG | - | chr6_2:79723629-79723648 | Msa0930670:three_prime_UTR | 15.0% |
!!! | TTTTTTGAAGTAATTTAGAA+TGG | + | chr6_2:79723815-79723834 | None:intergenic | 15.0% |
!! | AAGAATTAAGATTTAACTAA+AGG | + | chr6_2:79724032-79724051 | None:intergenic | 15.0% |
!!! | TTGTGTATATATTTTTTGTT+CGG | - | chr6_2:79724743-79724762 | Msa0930670:three_prime_UTR | 15.0% |
!! | TAGCATTTATAGAAAAAAAT+TGG | + | chr6_2:79726622-79726641 | None:intergenic | 15.0% |
!!! | ATGCAAATCATTTTAAAAAA+AGG | + | chr6_2:79727989-79728008 | None:intergenic | 15.0% |
!!! | TTCTCATATAATTTTTTCAA+AGG | + | chr6_2:79728054-79728073 | None:intergenic | 15.0% |
!!! | AAGAGTTAATTTTGTGAAAT+TGG | - | chr6_2:79723551-79723570 | Msa0930670:three_prime_UTR | 20.0% |
!!! | AGAGTTAATTTTGTGAAATT+GGG | - | chr6_2:79723552-79723571 | Msa0930670:three_prime_UTR | 20.0% |
!! | GTTATTATTGAATTGATACT+TGG | - | chr6_2:79723887-79723906 | Msa0930670:three_prime_UTR | 20.0% |
!!! | TGTTTCTTTTTTAGAATTTG+AGG | - | chr6_2:79724766-79724785 | Msa0930670:three_prime_UTR | 20.0% |
!! | TAATTCAGAACTGAATAAAT+CGG | - | chr6_2:79724876-79724895 | Msa0930670:three_prime_UTR | 20.0% |
!! | TAAGTTTATTGCTAATGATT+TGG | - | chr6_2:79724937-79724956 | Msa0930670:intron | 20.0% |
!! | TAAAATTCAAACTTGAAATG+TGG | - | chr6_2:79725045-79725064 | Msa0930670:intron | 20.0% |
!! | AAATCTCATTGTTATATCAT+TGG | - | chr6_2:79725126-79725145 | Msa0930670:three_prime_UTR | 20.0% |
!!! | TACATCTGATTATTTTTTTC+AGG | - | chr6_2:79725259-79725278 | Msa0930670:three_prime_UTR | 20.0% |
!!! | AAAAAGAAGTTTTAGACTTT+AGG | + | chr6_2:79726516-79726535 | None:intergenic | 20.0% |
!! | TTAAACAAAAGCTTGAAAAA+AGG | + | chr6_2:79726561-79726580 | None:intergenic | 20.0% |
!!! | CAAGCTTTTGTTTAAATTTA+TGG | - | chr6_2:79726566-79726585 | Msa0930670:CDS | 20.0% |
!! | AAGAAAGAATCATACAAATA+TGG | + | chr6_2:79727126-79727145 | None:intergenic | 20.0% |
!! | AAAGTTTCTATAGATAAAGA+AGG | + | chr6_2:79727286-79727305 | None:intergenic | 20.0% |
!! | ATTTCATTAAATAATGCACT+TGG | + | chr6_2:79727666-79727685 | None:intergenic | 20.0% |
!!! | ATTGATTTACCTAATTAGTT+TGG | - | chr6_2:79727741-79727760 | Msa0930670:intron | 20.0% |
!!! | TTGAAATCTTATTTTGTAGA+AGG | - | chr6_2:79728422-79728441 | Msa0930670:intron | 20.0% |
!! | AAGTTGTTAATGATTTCATT+AGG | - | chr6_2:79728566-79728585 | Msa0930670:intron | 20.0% |
!! | ATAAAATAAAGAGCAAGAAT+TGG | + | chr6_2:79728733-79728752 | None:intergenic | 20.0% |
!! | ATAAGTCACGAAATATATTT+CGG | - | chr6_2:79728778-79728797 | Msa0930670:intron | 20.0% |
! | AAGTGAGTATCTTGAAAATT+AGG | + | chr6_2:79723236-79723255 | None:intergenic | 25.0% |
! | TACTAAGAAATCAGTCAATT+CGG | + | chr6_2:79723290-79723309 | None:intergenic | 25.0% |
! | GAAAATATCACACATTCTAA+TGG | + | chr6_2:79723395-79723414 | None:intergenic | 25.0% |
! | AATAGTACTTATGTGCATAT+GGG | + | chr6_2:79723520-79723539 | None:intergenic | 25.0% |
! | TAATAGTACTTATGTGCATA+TGG | + | chr6_2:79723521-79723540 | None:intergenic | 25.0% |
!! | TTAATTTTGTGAAATTGGGT+GGG | - | chr6_2:79723556-79723575 | Msa0930670:three_prime_UTR | 25.0% |
! | ACACAAAAGTAAGTAAGATT+GGG | + | chr6_2:79724008-79724027 | None:intergenic | 25.0% |
!!! | AGAAGCATTTGTAAAATTGA+AGG | + | chr6_2:79724279-79724298 | None:intergenic | 25.0% |
!! | GTTGTAGAAAAGTATAATGA+TGG | + | chr6_2:79724374-79724393 | None:intergenic | 25.0% |
! | TCATTTGAATTATCCATAAC+AGG | - | chr6_2:79724442-79724461 | Msa0930670:intron | 25.0% |
! | TAATATCTTTACTCCTGTTA+TGG | + | chr6_2:79724458-79724477 | None:intergenic | 25.0% |
! | ACCTACTCTTATATATTTGT+TGG | - | chr6_2:79724506-79724525 | Msa0930670:intron | 25.0% |
! | CCTACTCTTATATATTTGTT+GGG | - | chr6_2:79724507-79724526 | Msa0930670:intron | 25.0% |
!!! | TATTGCTAATGATTTGGTTT+TGG | - | chr6_2:79724943-79724962 | Msa0930670:intron | 25.0% |
!! | ACTTCATTTTGTATGTTTGA+AGG | - | chr6_2:79725152-79725171 | Msa0930670:intron | 25.0% |
!!! | ATTTTAATTCTGACATCATG+GGG | + | chr6_2:79725179-79725198 | None:intergenic | 25.0% |
!!! | CATTTTAATTCTGACATCAT+GGG | + | chr6_2:79725180-79725199 | None:intergenic | 25.0% |
!!! | TCATTTTAATTCTGACATCA+TGG | + | chr6_2:79725181-79725200 | None:intergenic | 25.0% |
! | TGATGTCAGAATTAAAATGA+AGG | - | chr6_2:79725181-79725200 | Msa0930670:intron | 25.0% |
! | AGAATTAAAATGAAGGTTGT+TGG | - | chr6_2:79725188-79725207 | Msa0930670:intron | 25.0% |
!! | CTGGTTTACTTCATTTTATT+TGG | - | chr6_2:79725316-79725335 | Msa0930670:intron | 25.0% |
!!! | CTTCATTTTATTTGGTGATT+TGG | - | chr6_2:79725324-79725343 | Msa0930670:intron | 25.0% |
!!! | TTAATTGTTTTTCTGACTCA+TGG | - | chr6_2:79725363-79725382 | Msa0930670:intron | 25.0% |
! | ATAGTTAAAGAAGGTTTGAT+CGG | + | chr6_2:79726341-79726360 | None:intergenic | 25.0% |
! | TAGTGATAGATAGTTAAAGA+AGG | + | chr6_2:79726350-79726369 | None:intergenic | 25.0% |
! | TCTTTAACTATCTATCACTA+TGG | - | chr6_2:79726350-79726369 | Msa0930670:intron | 25.0% |
!!! | TGCTTTAAAAAAGAGAGAAA+AGG | + | chr6_2:79726751-79726770 | None:intergenic | 25.0% |
! | TAGAGCTGAAAAAAGAAAAT+GGG | + | chr6_2:79726962-79726981 | None:intergenic | 25.0% |
! | ATAGAGCTGAAAAAAGAAAA+TGG | + | chr6_2:79726963-79726982 | None:intergenic | 25.0% |
! | AGAAATAAAAATAGAGAGCA+TGG | + | chr6_2:79727076-79727095 | None:intergenic | 25.0% |
! | TTCTTTCTTGTCTGATTATA+TGG | - | chr6_2:79727137-79727156 | Msa0930670:intron | 25.0% |
!!! | GATTAATTTTTGTTTGCAGA+TGG | - | chr6_2:79727170-79727189 | Msa0930670:intron | 25.0% |
!! | CATTTTGCCTAATAGAATTT+AGG | - | chr6_2:79727551-79727570 | Msa0930670:CDS | 25.0% |
! | GAACTTACCTAAATTCTATT+AGG | + | chr6_2:79727561-79727580 | None:intergenic | 25.0% |
! | ATAGAATTTAGGTAAGTTCT+TGG | - | chr6_2:79727562-79727581 | Msa0930670:CDS | 25.0% |
! | CAATTAATTGAAACATAGTG+TGG | + | chr6_2:79727725-79727744 | None:intergenic | 25.0% |
! | TTCAAACTTCCAAACTAATT+AGG | + | chr6_2:79727753-79727772 | None:intergenic | 25.0% |
! | CTAATTTCAACTTATTAGGA+AGG | + | chr6_2:79727803-79727822 | None:intergenic | 25.0% |
! | CACACTAATTTCAACTTATT+AGG | + | chr6_2:79727807-79727826 | None:intergenic | 25.0% |
!! | CTAATAAGTTGAAATTAGTG+TGG | - | chr6_2:79727805-79727824 | Msa0930670:intron | 25.0% |
!!! | ATTAGTGTGGTTTTTCAATT+TGG | - | chr6_2:79727818-79727837 | Msa0930670:intron | 25.0% |
! | ATAGTATGAGCTAATAATCA+CGG | - | chr6_2:79727878-79727897 | Msa0930670:intron | 25.0% |
!! | TGCATATTCATTATGCATTT+TGG | - | chr6_2:79728004-79728023 | Msa0930670:intron | 25.0% |
!! | CTCAAAATTAAAGCATGTTT+TGG | - | chr6_2:79728259-79728278 | Msa0930670:intron | 25.0% |
!!! | AATTAAAGCATGTTTTGGAA+TGG | - | chr6_2:79728264-79728283 | Msa0930670:intron | 25.0% |
! | ATGACATGATACTTATAGAT+TGG | - | chr6_2:79728488-79728507 | Msa0930670:intron | 25.0% |
! | TGACATGATACTTATAGATT+GGG | - | chr6_2:79728489-79728508 | Msa0930670:intron | 25.0% |
! | TTATAGATTGGGTTCTATAT+TGG | - | chr6_2:79728500-79728519 | Msa0930670:intron | 25.0% |
! | TATAGATTGGGTTCTATATT+GGG | - | chr6_2:79728501-79728520 | Msa0930670:intron | 25.0% |
! | AAAATGTTTCCATCAAACAA+TGG | + | chr6_2:79728706-79728725 | None:intergenic | 25.0% |
! | TAAGTCACGAAATATATTTC+GGG | - | chr6_2:79728779-79728798 | Msa0930670:intron | 25.0% |
!!! | AATATATTTCGGGTTTTTCA+TGG | - | chr6_2:79728789-79728808 | Msa0930670:intron | 25.0% |
! | TTAGCTTACAATTAACTGAT+AGG | + | chr6_2:79728835-79728854 | None:intergenic | 25.0% |
AACAAATTTCATATTCAGCC+AGG | + | chr6_2:79723266-79723285 | None:intergenic | 30.0% | |
! | TGTGTGATATTTTCTGACTA+TGG | - | chr6_2:79723401-79723420 | Msa0930670:three_prime_UTR | 30.0% |
AATGAAATAAAGACCTACCA+GGG | + | chr6_2:79723454-79723473 | None:intergenic | 30.0% | |
AAATGAAATAAAGACCTACC+AGG | + | chr6_2:79723455-79723474 | None:intergenic | 30.0% | |
! | GTTAATTTTGTGAAATTGGG+TGG | - | chr6_2:79723555-79723574 | Msa0930670:three_prime_UTR | 30.0% |
CTCTGTTCATACAAATTTGA+AGG | + | chr6_2:79723662-79723681 | None:intergenic | 30.0% | |
GCTTATATTCATGTGATTTC+TGG | - | chr6_2:79723720-79723739 | Msa0930670:three_prime_UTR | 30.0% | |
! | TATATTCATGTGATTTCTGG+AGG | - | chr6_2:79723723-79723742 | Msa0930670:three_prime_UTR | 30.0% |
GAATTGATACTTGGTTGTAT+TGG | - | chr6_2:79723896-79723915 | Msa0930670:three_prime_UTR | 30.0% | |
!! | TTGGTTGTATTGGATTAGTA+TGG | - | chr6_2:79723906-79723925 | Msa0930670:three_prime_UTR | 30.0% |
!! | TGGTTGTATTGGATTAGTAT+GGG | - | chr6_2:79723907-79723926 | Msa0930670:three_prime_UTR | 30.0% |
CACACAAAAGTAAGTAAGAT+TGG | + | chr6_2:79724009-79724028 | None:intergenic | 30.0% | |
TTTACAAATGCTTCTACTGT+TGG | - | chr6_2:79724284-79724303 | Msa0930670:intron | 30.0% | |
ACTGTTAGAATGAGTAAACA+TGG | - | chr6_2:79724314-79724333 | Msa0930670:intron | 30.0% | |
!!! | ATGGTTTTGAAAGATAGACA+TGG | - | chr6_2:79724333-79724352 | Msa0930670:intron | 30.0% |
CCCAACAAATATATAAGAGT+AGG | + | chr6_2:79724510-79724529 | None:intergenic | 30.0% | |
! | TTATATATTTGTTGGGTTGC+AGG | - | chr6_2:79724514-79724533 | Msa0930670:intron | 30.0% |
! | GAATCCATCTTTGTAGTTTT+TGG | - | chr6_2:79724536-79724555 | Msa0930670:intron | 30.0% |
! | ACAATATTAGTTGCTTTGAC+AGG | - | chr6_2:79724635-79724654 | Msa0930670:three_prime_UTR | 30.0% |
AAAAAGTGAAATACCTGAAG+CGG | + | chr6_2:79724668-79724687 | None:intergenic | 30.0% | |
CAACATCAGAACAACAAAAA+AGG | + | chr6_2:79724698-79724717 | None:intergenic | 30.0% | |
!!! | TTTTTTAGAATTTGAGGCAG+TGG | - | chr6_2:79724772-79724791 | Msa0930670:three_prime_UTR | 30.0% |
AAATCTTGTGCAAAATGAGA+AGG | - | chr6_2:79724806-79724825 | Msa0930670:three_prime_UTR | 30.0% | |
! | GGTGATTTGGAAATTGATTA+AGG | - | chr6_2:79725337-79725356 | Msa0930670:intron | 30.0% |
TATTCAACTCATAGAACACT+CGG | - | chr6_2:79725579-79725598 | Msa0930670:intron | 30.0% | |
CTATAAACTACTTACGTACA+AGG | - | chr6_2:79725794-79725813 | Msa0930670:CDS | 30.0% | |
CATAACATAGCATTCAAAAG+AGG | + | chr6_2:79725982-79726001 | None:intergenic | 30.0% | |
AAATTTCTGCTACTGAATTC+AGG | - | chr6_2:79726030-79726049 | Msa0930670:CDS | 30.0% | |
!!! | AAGAAGTTTTAGACTTTAGG+AGG | + | chr6_2:79726513-79726532 | None:intergenic | 30.0% |
AATTCCATTCCAAAACTTAC+AGG | - | chr6_2:79726700-79726719 | Msa0930670:CDS | 30.0% | |
! | AAATTAGCTCCTGTAAGTTT+TGG | + | chr6_2:79726712-79726731 | None:intergenic | 30.0% |
AGTGATCTGAAGAGAAAAAA+AGG | + | chr6_2:79726818-79726837 | None:intergenic | 30.0% | |
CTATAGTAATGTGAACATGA+TGG | + | chr6_2:79726922-79726941 | None:intergenic | 30.0% | |
!! | AGCTCTATTTCTATCTGAAA+AGG | - | chr6_2:79726975-79726994 | Msa0930670:intron | 30.0% |
TAATGAAGCCAGGAAAATTA+AGG | + | chr6_2:79727003-79727022 | None:intergenic | 30.0% | |
ATACACATTATAATGAAGCC+AGG | + | chr6_2:79727013-79727032 | None:intergenic | 30.0% | |
GGCTTCATTATAATGTGTAT+TGG | - | chr6_2:79727013-79727032 | Msa0930670:intron | 30.0% | |
TATGTCCATCTAACTCAAAA+TGG | + | chr6_2:79727235-79727254 | None:intergenic | 30.0% | |
CTTCATACTAAGAAAGAAGA+AGG | - | chr6_2:79727386-79727405 | Msa0930670:intron | 30.0% | |
GAAGAAAACCACCATATTAT+CGG | + | chr6_2:79727414-79727433 | None:intergenic | 30.0% | |
TAATTGAAACATAGTGTGGT+TGG | + | chr6_2:79727721-79727740 | None:intergenic | 30.0% | |
ACTTATTAGGAAGGATAAAG+AGG | + | chr6_2:79727794-79727813 | None:intergenic | 30.0% | |
ATCTCATTCAGCCAAAAATA+TGG | + | chr6_2:79727860-79727879 | None:intergenic | 30.0% | |
AGCTATAGTTTACTTGCAAA+AGG | + | chr6_2:79728241-79728260 | None:intergenic | 30.0% | |
CATTAACAACTTCAACATCA+TGG | + | chr6_2:79728558-79728577 | None:intergenic | 30.0% | |
GATTTCTTAGTAGAGACTAG+AGG | - | chr6_2:79723298-79723317 | Msa0930670:three_prime_UTR | 35.0% | |
TAGCATTCATTAGCTGTTAC+AGG | - | chr6_2:79723682-79723701 | Msa0930670:three_prime_UTR | 35.0% | |
TTCATTAGCTGTTACAGGTA+TGG | - | chr6_2:79723687-79723706 | Msa0930670:three_prime_UTR | 35.0% | |
!! | TGTATTGGATTAGTATGGGT+TGG | - | chr6_2:79723911-79723930 | Msa0930670:three_prime_UTR | 35.0% |
!! | GTATTGGATTAGTATGGGTT+GGG | - | chr6_2:79723912-79723931 | Msa0930670:three_prime_UTR | 35.0% |
!! | TATTGGATTAGTATGGGTTG+GGG | - | chr6_2:79723913-79723932 | Msa0930670:three_prime_UTR | 35.0% |
GGTTTCATCTAGCTAACATT+GGG | + | chr6_2:79724258-79724277 | None:intergenic | 35.0% | |
AGGTTTCATCTAGCTAACAT+TGG | + | chr6_2:79724259-79724278 | None:intergenic | 35.0% | |
CCTTCACTGATGATAAAGTA+TGG | + | chr6_2:79724564-79724583 | None:intergenic | 35.0% | |
CCATACTTTATCATCAGTGA+AGG | - | chr6_2:79724561-79724580 | Msa0930670:three_prime_UTR | 35.0% | |
TTATCATCAGTGAAGGTTCA+AGG | - | chr6_2:79724568-79724587 | Msa0930670:three_prime_UTR | 35.0% | |
! | CTCATTTTGCACAAGATTTG+AGG | + | chr6_2:79724805-79724824 | None:intergenic | 35.0% |
TTTACACAGTCAAGTGATTC+AGG | - | chr6_2:79724995-79725014 | Msa0930670:intron | 35.0% | |
CAATTGATCGATCTAAACCA+TGG | + | chr6_2:79725071-79725090 | None:intergenic | 35.0% | |
AAAAACTATCTACCTTGAGG+TGG | + | chr6_2:79725235-79725254 | None:intergenic | 35.0% | |
CAGAAAAACTATCTACCTTG+AGG | + | chr6_2:79725238-79725257 | None:intergenic | 35.0% | |
CAGAGACATATAGTTCATTG+CGG | + | chr6_2:79725299-79725318 | None:intergenic | 35.0% | |
TCCAACAACACCAACTATAT+AGG | + | chr6_2:79725514-79725533 | None:intergenic | 35.0% | |
!! | ATATAGTTGGTGTTGTTGGA+TGG | - | chr6_2:79725514-79725533 | Msa0930670:intron | 35.0% |
!! | TATAGTTGGTGTTGTTGGAT+GGG | - | chr6_2:79725515-79725534 | Msa0930670:intron | 35.0% |
ATTCAACTCATAGAACACTC+GGG | - | chr6_2:79725580-79725599 | Msa0930670:intron | 35.0% | |
CATGTAATGTCATACCTGAA+GGG | + | chr6_2:79725628-79725647 | None:intergenic | 35.0% | |
ACATGTAATGTCATACCTGA+AGG | + | chr6_2:79725629-79725648 | None:intergenic | 35.0% | |
!!! | ACGTACAAGGTTTTGAATTG+TGG | - | chr6_2:79725807-79725826 | Msa0930670:CDS | 35.0% |
! | GGTTTTTGCTCTGTTATTAC+TGG | - | chr6_2:79726051-79726070 | Msa0930670:CDS | 35.0% |
ATTACTGGAACCTTTACCAT+TGG | - | chr6_2:79726066-79726085 | Msa0930670:intron | 35.0% | |
TTACTGGAACCTTTACCATT+GGG | - | chr6_2:79726067-79726086 | Msa0930670:intron | 35.0% | |
AGCATCGTCAACATCTTTAA+AGG | - | chr6_2:79726116-79726135 | Msa0930670:intron | 35.0% | |
GCATCGTCAACATCTTTAAA+GGG | - | chr6_2:79726117-79726136 | Msa0930670:intron | 35.0% | |
! | CAACATCTTTAAAGGGTTTG+AGG | - | chr6_2:79726124-79726143 | Msa0930670:intron | 35.0% |
!! | TACTTTTGGAAGCTTACACA+TGG | - | chr6_2:79726231-79726250 | Msa0930670:intron | 35.0% |
ACATGGATCATTGTGATCAA+GGG | - | chr6_2:79726248-79726267 | Msa0930670:intron | 35.0% | |
AAATCAGAGAACAAGTTGCA+AGG | - | chr6_2:79726275-79726294 | Msa0930670:intron | 35.0% | |
AACAAGTTGCAAGGAATGAA+TGG | - | chr6_2:79726284-79726303 | Msa0930670:intron | 35.0% | |
CAAGGAATGAATGGAACAAA+TGG | - | chr6_2:79726293-79726312 | Msa0930670:intron | 35.0% | |
ATGAATGGAACAAATGGTGA+TGG | - | chr6_2:79726299-79726318 | Msa0930670:intron | 35.0% | |
! | GTTTGAAGTGTTATCAGACA+TGG | + | chr6_2:79726442-79726461 | None:intergenic | 35.0% |
CGTGAAGCTTCAATTTATAC+AGG | - | chr6_2:79726477-79726496 | Msa0930670:intron | 35.0% | |
! | GTTGACTTTCTCTCCATTAA+CGG | - | chr6_2:79726874-79726893 | Msa0930670:intron | 35.0% |
TTGACTTTCTCTCCATTAAC+GGG | - | chr6_2:79726875-79726894 | Msa0930670:intron | 35.0% | |
!!! | AAAAGGCACCTTAATTTTCC+TGG | - | chr6_2:79726992-79727011 | Msa0930670:intron | 35.0% |
TAATGTGTATTGGAATCGCT+TGG | - | chr6_2:79727023-79727042 | Msa0930670:intron | 35.0% | |
AATGTGTATTGGAATCGCTT+GGG | - | chr6_2:79727024-79727043 | Msa0930670:intron | 35.0% | |
!!! | TCCTTCCATTTTGAGTTAGA+TGG | - | chr6_2:79727227-79727246 | Msa0930670:intron | 35.0% |
TCCATCTAACTCAAAATGGA+AGG | + | chr6_2:79727231-79727250 | None:intergenic | 35.0% | |
CTTTAATTGTGCTTCTGATG+AGG | - | chr6_2:79727308-79727327 | Msa0930670:CDS | 35.0% | |
AGAAGAAGGAACCGATAATA+TGG | - | chr6_2:79727400-79727419 | Msa0930670:intron | 35.0% | |
TCTTGAAAGATCCTCGTTAA+TGG | + | chr6_2:79727529-79727548 | None:intergenic | 35.0% | |
! | TTCAAGTGCAGCCATATTTT+TGG | - | chr6_2:79727846-79727865 | Msa0930670:intron | 35.0% |
!! | AGCAGTATTTTTGATCTAGC+AGG | - | chr6_2:79728147-79728166 | Msa0930670:intron | 35.0% |
TCTGTCTTTCATTAGTAGCT+TGG | + | chr6_2:79728290-79728309 | None:intergenic | 35.0% | |
AGAACAAGCACAAATGTTAG+AGG | - | chr6_2:79728313-79728332 | Msa0930670:intron | 35.0% | |
GAACAAGCACAAATGTTAGA+GGG | - | chr6_2:79728314-79728333 | Msa0930670:intron | 35.0% | |
ACAAATGTTAGAGGGACAAT+GGG | - | chr6_2:79728322-79728341 | Msa0930670:intron | 35.0% | |
!! | ATATCCACTTTTGCAGTGAT+AGG | + | chr6_2:79728379-79728398 | None:intergenic | 35.0% |
AAAGTGGATATCTACAGCTT+TGG | - | chr6_2:79728388-79728407 | Msa0930670:intron | 35.0% | |
GTTCTATATTGGGCAAAAGA+GGG | - | chr6_2:79728511-79728530 | Msa0930670:intron | 35.0% | |
TTCTATATTGGGCAAAAGAG+GGG | - | chr6_2:79728512-79728531 | Msa0930670:intron | 35.0% | |
TAGGTTTGAGAGAATGACTA+TGG | - | chr6_2:79728585-79728604 | Msa0930670:intron | 35.0% | |
TTTGAGAGAATGACTATGGT+TGG | - | chr6_2:79728589-79728608 | Msa0930670:intron | 35.0% | |
ATGGCCTAATAGTTGGATTA+GGG | + | chr6_2:79728630-79728649 | None:intergenic | 35.0% | |
ATGTTTCCATCAAACAATGG+TGG | + | chr6_2:79728703-79728722 | None:intergenic | 35.0% | |
AACAGAGCAAACATACTTTG+TGG | - | chr6_2:79728867-79728886 | Msa0930670:intron | 35.0% | |
GACAACCTCTCACATATTTA+AGG | + | chr6_2:79728894-79728913 | None:intergenic | 35.0% | |
TCTGACTATGGAACTGATCT+TGG | - | chr6_2:79723413-79723432 | Msa0930670:three_prime_UTR | 40.0% | |
TATGGAACTGATCTTGGATC+AGG | - | chr6_2:79723419-79723438 | Msa0930670:three_prime_UTR | 40.0% | |
! | TTTTGTGAAATTGGGTGGGT+AGG | - | chr6_2:79723560-79723579 | Msa0930670:three_prime_UTR | 40.0% |
GTGGGTAGGAATTAAGCTAA+AGG | - | chr6_2:79723574-79723593 | Msa0930670:three_prime_UTR | 40.0% | |
TGTTAAAGCCAAAGACGACA+TGG | - | chr6_2:79723941-79723960 | Msa0930670:three_prime_UTR | 40.0% | |
ATCTACTACCATGTCGTCTT+TGG | + | chr6_2:79723952-79723971 | None:intergenic | 40.0% | |
AATTCTTGCAATTCCTGTCC+AGG | - | chr6_2:79724045-79724064 | Msa0930670:intron | 40.0% | |
! | TCCAGGTAAAATGAAGCACT+GGG | - | chr6_2:79724062-79724081 | Msa0930670:intron | 40.0% |
!! | TAAAATGAAGCACTGGGAGA+TGG | - | chr6_2:79724068-79724087 | Msa0930670:intron | 40.0% |
ACCAAACACAGTGAGATAGA+GGG | + | chr6_2:79724420-79724439 | None:intergenic | 40.0% | |
AACCAAACACAGTGAGATAG+AGG | + | chr6_2:79724421-79724440 | None:intergenic | 40.0% | |
GGTGCCAAAAACTACAAAGA+TGG | + | chr6_2:79724543-79724562 | None:intergenic | 40.0% | |
! | TTTAGAATTTGAGGCAGTGG+AGG | - | chr6_2:79724775-79724794 | Msa0930670:three_prime_UTR | 40.0% |
! | TTAGAATTTGAGGCAGTGGA+GGG | - | chr6_2:79724776-79724795 | Msa0930670:three_prime_UTR | 40.0% |
TCAAACTCTAAATGTGAGCG+TGG | - | chr6_2:79724908-79724927 | Msa0930670:three_prime_UTR | 40.0% | |
TCAAACTTGAAATGTGGCCA+TGG | - | chr6_2:79725051-79725070 | Msa0930670:intron | 40.0% | |
ATGAAGGTTGTTGGAATCTG+TGG | - | chr6_2:79725197-79725216 | Msa0930670:intron | 40.0% | |
TGAAGGTTGTTGGAATCTGT+GGG | - | chr6_2:79725198-79725217 | Msa0930670:intron | 40.0% | |
CGCAATGAACTATATGTCTC+TGG | - | chr6_2:79725297-79725316 | Msa0930670:intron | 40.0% | |
ATTGTTGAATGCAGTGAGCT+TGG | - | chr6_2:79725386-79725405 | Msa0930670:intron | 40.0% | |
TTGTTGAATGCAGTGAGCTT+GGG | - | chr6_2:79725387-79725406 | Msa0930670:intron | 40.0% | |
! | TGTGATTGCAAGGTACTTGA+AGG | - | chr6_2:79725431-79725450 | Msa0930670:intron | 40.0% |
CATGAAGGTAAAACCAAGCA+GGG | + | chr6_2:79725473-79725492 | None:intergenic | 40.0% | |
ACATGAAGGTAAAACCAAGC+AGG | + | chr6_2:79725474-79725493 | None:intergenic | 40.0% | |
CTGATTGGCATGTAACATGA+AGG | + | chr6_2:79725488-79725507 | None:intergenic | 40.0% | |
CAACTATATAGGCAGCTGAT+TGG | + | chr6_2:79725503-79725522 | None:intergenic | 40.0% | |
CAATCAGCTGCCTATATAGT+TGG | - | chr6_2:79725501-79725520 | Msa0930670:intron | 40.0% | |
!! | GCCTATATAGTTGGTGTTGT+TGG | - | chr6_2:79725510-79725529 | Msa0930670:intron | 40.0% |
!! | ATAGTTGGTGTTGTTGGATG+GGG | - | chr6_2:79725516-79725535 | Msa0930670:intron | 40.0% |
!!! | AAGGTTTTGAATTGTGGCTG+TGG | - | chr6_2:79725813-79725832 | Msa0930670:CDS | 40.0% |
AAAAGTTCGACACTGCAATC+TGG | + | chr6_2:79725939-79725958 | None:intergenic | 40.0% | |
TACTGGAACCTTTACCATTG+GGG | - | chr6_2:79726068-79726087 | Msa0930670:intron | 40.0% | |
AAAGATGTTGACGATGCTGA+TGG | + | chr6_2:79726114-79726133 | None:intergenic | 40.0% | |
CACATGGATCATTGTGATCA+AGG | - | chr6_2:79726247-79726266 | Msa0930670:intron | 40.0% | |
CATGGATCATTGTGATCAAG+GGG | - | chr6_2:79726249-79726268 | Msa0930670:intron | 40.0% | |
!! | GGAACAAATGGTGATGGATA+TGG | - | chr6_2:79726305-79726324 | Msa0930670:intron | 40.0% |
!! | AAGAGTACCTTTGATGATGG+TGG | + | chr6_2:79726376-79726395 | None:intergenic | 40.0% |
!! | CTGAAGAGTACCTTTGATGA+TGG | + | chr6_2:79726379-79726398 | None:intergenic | 40.0% |
!!! | AGCTCCTGTAAGTTTTGGAA+TGG | + | chr6_2:79726707-79726726 | None:intergenic | 40.0% |
CATGTACTTGCAGCTATTGA+TGG | + | chr6_2:79726842-79726861 | None:intergenic | 40.0% | |
AATGGAGAGAAAGTCAACAG+TGG | + | chr6_2:79726872-79726891 | None:intergenic | 40.0% | |
TCAGAGTATGATGCTTAGAG+TGG | - | chr6_2:79727203-79727222 | Msa0930670:intron | 40.0% | |
AGAAGGAACCGATAATATGG+TGG | - | chr6_2:79727403-79727422 | Msa0930670:intron | 40.0% | |
TATTCCTTCTATGAGATGCC+TGG | - | chr6_2:79727471-79727490 | Msa0930670:intron | 40.0% | |
CACAAATGTTAGAGGGACAA+TGG | - | chr6_2:79728321-79728340 | Msa0930670:intron | 40.0% | |
TAGAGGGACAATGGGATATT+TGG | - | chr6_2:79728330-79728349 | Msa0930670:intron | 40.0% | |
!! | GAGTTGCATCAAGTTGAAGA+TGG | - | chr6_2:79728451-79728470 | Msa0930670:intron | 40.0% |
! | CAAGTTGAAGATGGAACAGA+AGG | - | chr6_2:79728460-79728479 | Msa0930670:intron | 40.0% |
GGTTCTATATTGGGCAAAAG+AGG | - | chr6_2:79728510-79728529 | Msa0930670:intron | 40.0% | |
TGTGCCCTAATCCAACTATT+AGG | - | chr6_2:79728623-79728642 | Msa0930670:intron | 40.0% | |
GATGGCCTAATAGTTGGATT+AGG | + | chr6_2:79728631-79728650 | None:intergenic | 40.0% | |
TATTAGGCCATCTGTTGCAA+AGG | - | chr6_2:79728639-79728658 | Msa0930670:intron | 40.0% | |
AGTGTTCCACCATTGTTTGA+TGG | - | chr6_2:79728694-79728713 | Msa0930670:CDS | 40.0% | |
GTGGTCCTTAAATATGTGAG+AGG | - | chr6_2:79728886-79728905 | Msa0930670:intron | 40.0% | |
! | GATACTCACTTGATTCGACC+TGG | - | chr6_2:79723245-79723264 | Msa0930670:three_prime_UTR | 45.0% |
!! | GTCGTCTTTGGCTTTAACAC+TGG | + | chr6_2:79723940-79723959 | None:intergenic | 45.0% |
! | GTGCTTCATTTTACCTGGAC+AGG | + | chr6_2:79724061-79724080 | None:intergenic | 45.0% |
GTCCAGGTAAAATGAAGCAC+TGG | - | chr6_2:79724061-79724080 | Msa0930670:intron | 45.0% | |
! | TCCCAGTGCTTCATTTTACC+TGG | + | chr6_2:79724066-79724085 | None:intergenic | 45.0% |
TCCCTCTATCTCACTGTGTT+TGG | - | chr6_2:79724416-79724435 | Msa0930670:intron | 45.0% | |
! | TAGAATTTGAGGCAGTGGAG+GGG | - | chr6_2:79724777-79724796 | Msa0930670:three_prime_UTR | 45.0% |
ACTCTAAATGTGAGCGTGGT+TGG | - | chr6_2:79724912-79724931 | Msa0930670:three_prime_UTR | 45.0% | |
TGTTGAATGCAGTGAGCTTG+GGG | - | chr6_2:79725388-79725407 | Msa0930670:intron | 45.0% | |
TTGGGGATCTTGATGCCTTT+GGG | - | chr6_2:79725405-79725424 | Msa0930670:intron | 45.0% | |
AACCTTTACCATTGGGGTGT+CGG | - | chr6_2:79726074-79726093 | Msa0930670:intron | 45.0% | |
! | CTTTAAAGGGTTTGAGGCCT+TGG | - | chr6_2:79726130-79726149 | Msa0930670:intron | 45.0% |
! | AACTGGAAGCATGCATACAC+CGG | - | chr6_2:79726179-79726198 | Msa0930670:intron | 45.0% |
ACCGGCATTATTGCAGCATT+GGG | - | chr6_2:79726197-79726216 | Msa0930670:intron | 45.0% | |
ACCCAATGCTGCAATAATGC+CGG | + | chr6_2:79726201-79726220 | None:intergenic | 45.0% | |
ACTATGGCCACCATCATCAA+AGG | - | chr6_2:79726366-79726385 | Msa0930670:intron | 45.0% | |
TAACACTTCAAACATGCCCG+TGG | - | chr6_2:79726449-79726468 | Msa0930670:intron | 45.0% | |
ACTTTCCACTCACCCGTTAA+TGG | + | chr6_2:79726890-79726909 | None:intergenic | 45.0% | |
GTGCTTCTGATGAGGAAGAA+AGG | - | chr6_2:79727316-79727335 | Msa0930670:CDS | 45.0% | |
AATGCCAGGCATCTCATAGA+AGG | + | chr6_2:79727478-79727497 | None:intergenic | 45.0% | |
AGATCCTCGTTAATGGCAAC+AGG | + | chr6_2:79727522-79727541 | None:intergenic | 45.0% | |
! | GATAAAGAGGTGTGACAGCA+AGG | + | chr6_2:79727781-79727800 | None:intergenic | 45.0% |
TCACTGTCGAGAAAGATGCT+CGG | + | chr6_2:79727948-79727967 | None:intergenic | 45.0% | |
TGGGATATTTGGCACCAGAA+TGG | - | chr6_2:79728341-79728360 | Msa0930670:intron | 45.0% | |
!! | GGTGCATTTTTGAGCCATTC+TGG | + | chr6_2:79728358-79728377 | None:intergenic | 45.0% |
TGCACCTATCACTGCAAAAG+TGG | - | chr6_2:79728372-79728391 | Msa0930670:intron | 45.0% | |
GTTGAAGATGGAACAGAAGG+TGG | - | chr6_2:79728463-79728482 | Msa0930670:intron | 45.0% | |
GAATGACTATGGTTGGACTG+TGG | - | chr6_2:79728596-79728615 | Msa0930670:intron | 45.0% | |
GCAACAGATGGCCTAATAGT+TGG | + | chr6_2:79728637-79728656 | None:intergenic | 45.0% | |
TGCAACACCTTTGCAACAGA+TGG | + | chr6_2:79728649-79728668 | None:intergenic | 45.0% | |
!! | TGCAAAGGTGTTGCAGATGT+CGG | - | chr6_2:79728654-79728673 | Msa0930670:intron | 45.0% |
GACAGGTTTCTTTCCGCTTC+AGG | - | chr6_2:79724652-79724671 | Msa0930670:three_prime_UTR | 50.0% | |
GAGTGATGTTCACCACCTCA+AGG | - | chr6_2:79725220-79725239 | Msa0930670:intron | 50.0% | |
CTTGGGGATCTTGATGCCTT+TGG | - | chr6_2:79725404-79725423 | Msa0930670:intron | 50.0% | |
CTTGCAATCACAGCTCCCAA+AGG | + | chr6_2:79725423-79725442 | None:intergenic | 50.0% | |
! | CTTTGGGAGCTGTGATTGCA+AGG | - | chr6_2:79725421-79725440 | Msa0930670:intron | 50.0% |
TCAAAACAGCAGACCCTGCT+TGG | - | chr6_2:79725457-79725476 | Msa0930670:intron | 50.0% | |
AAGCTGGGAAGTGACTTAGC+TGG | - | chr6_2:79725549-79725568 | Msa0930670:intron | 50.0% | |
GTCATACCTGAAGGGTTCCA+AGG | + | chr6_2:79725620-79725639 | None:intergenic | 50.0% | |
ATCCGACACCCCAATGGTAA+AGG | + | chr6_2:79726079-79726098 | None:intergenic | 50.0% | |
! | TAAAGGGTTTGAGGCCTTGG+AGG | - | chr6_2:79726133-79726152 | Msa0930670:intron | 50.0% |
CACCGGCATTATTGCAGCAT+TGG | - | chr6_2:79726196-79726215 | Msa0930670:intron | 50.0% | |
! | GGCATTATTGCAGCATTGGG+TGG | - | chr6_2:79726200-79726219 | Msa0930670:intron | 50.0% |
! | GGGTGGCATTGCTGTACTTT+TGG | - | chr6_2:79726217-79726236 | Msa0930670:intron | 50.0% |
CTTCAGACTCTCCTATCAGC+TGG | - | chr6_2:79726393-79726412 | Msa0930670:intron | 50.0% | |
TCTCAACCTCACCAGCTGAT+AGG | + | chr6_2:79726407-79726426 | None:intergenic | 50.0% | |
! | TCTCTCCATTAACGGGTGAG+TGG | - | chr6_2:79726882-79726901 | Msa0930670:intron | 50.0% |
! | GGCATTTGGCTCATAATGCC+AGG | + | chr6_2:79727492-79727511 | None:intergenic | 50.0% |
TTAATGGCAACAGGCAGTGG+CGG | + | chr6_2:79727513-79727532 | None:intergenic | 50.0% | |
TCGTTAATGGCAACAGGCAG+TGG | + | chr6_2:79727516-79727535 | None:intergenic | 50.0% | |
ACTGCCTGTTGCCATTAACG+AGG | - | chr6_2:79727515-79727534 | Msa0930670:intron | 50.0% | |
!! | AAGGTGTTGCAGATGTCGGA+AGG | - | chr6_2:79728658-79728677 | Msa0930670:intron | 50.0% |
! | ATGGGGTACCAGTGTCAAGC+TGG | - | chr6_2:79725533-79725552 | Msa0930670:intron | 55.0% |
! | TGGGGTACCAGTGTCAAGCT+GGG | - | chr6_2:79725534-79725553 | Msa0930670:intron | 55.0% |
GTCACTTCCCAGCTTGACAC+TGG | + | chr6_2:79725544-79725563 | None:intergenic | 55.0% | |
GGGATCATCCTCTTCTGCCT+TGG | - | chr6_2:79725600-79725619 | Msa0930670:intron | 55.0% | |
GAAGGGTTCCAAGGCAGAAG+AGG | + | chr6_2:79725611-79725630 | None:intergenic | 55.0% | |
CTTCTGCCTTGGAACCCTTC+AGG | - | chr6_2:79725611-79725630 | Msa0930670:intron | 55.0% | |
TTGCGTATCCGACACCCCAA+TGG | + | chr6_2:79726085-79726104 | None:intergenic | 55.0% | |
CAGCGGATCGCTACGATAAC+TGG | - | chr6_2:79726162-79726181 | Msa0930670:intron | 55.0% | |
GACTCTCCTATCAGCTGGTG+AGG | - | chr6_2:79726398-79726417 | Msa0930670:intron | 55.0% | |
TGAAGCTTCACGAGCAGCCA+CGG | + | chr6_2:79726469-79726488 | None:intergenic | 55.0% | |
! | CGAGAAAGATGCTCGGTGAG+TGG | + | chr6_2:79727941-79727960 | None:intergenic | 55.0% |
ATCCGCTGCAGACACCTCCA+AGG | + | chr6_2:79726150-79726169 | None:intergenic | 60.0% | |
GAAGCTTCACGAGCAGCCAC+GGG | + | chr6_2:79726468-79726487 | None:intergenic | 60.0% | |
CAACAGGCAGTGGCGGCATT+TGG | + | chr6_2:79727506-79727525 | None:intergenic | 60.0% | |
! | GATGCTCGGTGAGTGGTGAC+AGG | + | chr6_2:79727934-79727953 | None:intergenic | 60.0% |
GGATCAGGCTCGACTGTCCC+TGG | - | chr6_2:79723434-79723453 | Msa0930670:three_prime_UTR | 65.0% | |
CAGGCTCGACTGTCCCTGGT+AGG | - | chr6_2:79723438-79723457 | Msa0930670:three_prime_UTR | 65.0% | |
!! | GGCCTTGGAGGTGTCTGCAG+CGG | - | chr6_2:79726145-79726164 | Msa0930670:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_2 | gene | 79723215 | 79728915 | 79723215 | ID=Msa0930670;Name=Msa0930670 |
chr6_2 | mRNA | 79723215 | 79728915 | 79723215 | ID=Msa0930670-mRNA-1;Parent=Msa0930670;Name=Msa0930670-mRNA-1;_AED=0.15;_eAED=0.18;_QI=0|0.5|0.54|1|0.1|0.18|11|1345|266 |
chr6_2 | exon | 79723215 | 79723961 | 79723215 | ID=Msa0930670-mRNA-1:exon:13835;Parent=Msa0930670-mRNA-1 |
chr6_2 | exon | 79724558 | 79724941 | 79724558 | ID=Msa0930670-mRNA-1:exon:13834;Parent=Msa0930670-mRNA-1 |
chr6_2 | exon | 79725085 | 79725153 | 79725085 | ID=Msa0930670-mRNA-1:exon:13833;Parent=Msa0930670-mRNA-1 |
chr6_2 | exon | 79725234 | 79725298 | 79725234 | ID=Msa0930670-mRNA-1:exon:13832;Parent=Msa0930670-mRNA-1 |
chr6_2 | exon | 79725632 | 79726078 | 79725632 | ID=Msa0930670-mRNA-1:exon:13831;Parent=Msa0930670-mRNA-1 |
chr6_2 | exon | 79726498 | 79726537 | 79726498 | ID=Msa0930670-mRNA-1:exon:13830;Parent=Msa0930670-mRNA-1 |
chr6_2 | exon | 79726560 | 79726730 | 79726560 | ID=Msa0930670-mRNA-1:exon:13829;Parent=Msa0930670-mRNA-1 |
chr6_2 | exon | 79727256 | 79727338 | 79727256 | ID=Msa0930670-mRNA-1:exon:13828;Parent=Msa0930670-mRNA-1 |
chr6_2 | exon | 79727531 | 79727594 | 79727531 | ID=Msa0930670-mRNA-1:exon:13827;Parent=Msa0930670-mRNA-1 |
chr6_2 | exon | 79728675 | 79728744 | 79728675 | ID=Msa0930670-mRNA-1:exon:13826;Parent=Msa0930670-mRNA-1 |
chr6_2 | exon | 79728910 | 79728915 | 79728910 | ID=Msa0930670-mRNA-1:exon:13825;Parent=Msa0930670-mRNA-1 |
chr6_2 | CDS | 79728910 | 79728915 | 79728910 | ID=Msa0930670-mRNA-1:cds;Parent=Msa0930670-mRNA-1 |
chr6_2 | CDS | 79728675 | 79728744 | 79728675 | ID=Msa0930670-mRNA-1:cds;Parent=Msa0930670-mRNA-1 |
chr6_2 | CDS | 79727531 | 79727594 | 79727531 | ID=Msa0930670-mRNA-1:cds;Parent=Msa0930670-mRNA-1 |
chr6_2 | CDS | 79727256 | 79727338 | 79727256 | ID=Msa0930670-mRNA-1:cds;Parent=Msa0930670-mRNA-1 |
chr6_2 | CDS | 79726560 | 79726730 | 79726560 | ID=Msa0930670-mRNA-1:cds;Parent=Msa0930670-mRNA-1 |
chr6_2 | CDS | 79726498 | 79726537 | 79726498 | ID=Msa0930670-mRNA-1:cds;Parent=Msa0930670-mRNA-1 |
chr6_2 | CDS | 79725712 | 79726078 | 79725712 | ID=Msa0930670-mRNA-1:cds;Parent=Msa0930670-mRNA-1 |
chr6_2 | three_prime_UTR | 79725632 | 79725711 | 79725632 | ID=Msa0930670-mRNA-1:three_prime_utr;Parent=Msa0930670-mRNA-1 |
chr6_2 | three_prime_UTR | 79725234 | 79725298 | 79725234 | ID=Msa0930670-mRNA-1:three_prime_utr;Parent=Msa0930670-mRNA-1 |
chr6_2 | three_prime_UTR | 79725085 | 79725153 | 79725085 | ID=Msa0930670-mRNA-1:three_prime_utr;Parent=Msa0930670-mRNA-1 |
chr6_2 | three_prime_UTR | 79724558 | 79724941 | 79724558 | ID=Msa0930670-mRNA-1:three_prime_utr;Parent=Msa0930670-mRNA-1 |
chr6_2 | three_prime_UTR | 79723215 | 79723961 | 79723215 | ID=Msa0930670-mRNA-1:three_prime_utr;Parent=Msa0930670-mRNA-1 |
Gene Sequence |
Protein sequence |