AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0930670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0930670 MtrunA17_Chr2g0290131 71.212 198 33 3 58 237 208 399 1.17e-82 253
Msa0930670 MtrunA17_Chr2g0278181 54.950 202 66 4 53 235 111 306 3.43e-56 182
Msa0930670 MtrunA17_Chr4g0076051 55.779 199 63 4 56 235 203 395 1.31e-55 183
Msa0930670 MtrunA17_Chr7g0234191 43.011 186 82 3 75 242 264 443 5.24e-35 130
Msa0930670 MtrunA17_Chr5g0447771 32.597 181 99 5 73 234 258 434 2.85e-21 92.4
Msa0930670 MtrunA17_Chr5g0444651 34.177 158 80 5 78 216 237 389 6.95e-21 91.3
Msa0930670 MtrunA17_Chr3g0101961 30.189 212 119 6 35 222 171 377 1.37e-17 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0930670 AT3G25290.1 39.331 239 105 7 15 228 168 391 4.27e-46 159
Msa0930670 AT3G25290.2 39.331 239 105 7 15 228 168 391 4.27e-46 159
Msa0930670 AT5G47530.1 41.584 202 89 3 56 239 204 394 2.26e-43 152
Msa0930670 AT4G17280.1 42.347 196 84 3 56 233 212 396 4.72e-42 148
Msa0930670 AT5G35735.1 39.423 208 85 6 56 235 204 398 2.84e-37 136
Msa0930670 AT4G12980.1 39.037 187 85 5 55 223 213 388 3.66e-37 135
Msa0930670 AT3G59070.1 33.143 175 86 4 56 208 207 372 4.08e-20 89.7
Msa0930670 AT2G04850.1 28.415 183 100 5 73 232 223 397 1.35e-17 82.0

Find 159 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACAACCTCTCACATATTTA+AGG 0.143428 6_2:+79723217 None:intergenic
ACTTTCCACTCACCCGTTAA+TGG 0.208512 6_2:+79725221 None:intergenic
CTCAAAATTAAAGCATGTTT+TGG 0.214988 6_2:-79723849 Msa0930670:three_prime_UTR
TTATAGATTGGGTTCTATAT+TGG 0.218702 6_2:-79723608 Msa0930670:three_prime_UTR
CTTGGGGATCTTGATGCCTT+TGG 0.236519 6_2:-79726704 Msa0930670:CDS
TCTTGAAAGATCCTCGTTAA+TGG 0.242729 6_2:+79724582 None:intergenic
CAGCGGATCGCTACGATAAC+TGG 0.249372 6_2:-79725946 Msa0930670:CDS
ATAAGTCACGAAATATATTT+CGG 0.253236 6_2:-79723330 Msa0930670:three_prime_UTR
AGCATCGTCAACATCTTTAA+AGG 0.254895 6_2:-79725992 Msa0930670:CDS
TAGAGGGACAATGGGATATT+TGG 0.257183 6_2:-79723778 Msa0930670:three_prime_UTR
CTTTAAAGGGTTTGAGGCCT+TGG 0.269499 6_2:-79725978 Msa0930670:CDS
TATAGATTGGGTTCTATATT+GGG 0.279264 6_2:-79723607 Msa0930670:three_prime_UTR
TAAGTCACGAAATATATTTC+GGG 0.283711 6_2:-79723329 Msa0930670:three_prime_UTR
TTGGGGATCTTGATGCCTTT+GGG 0.305249 6_2:-79726703 Msa0930670:CDS
TCTGACTATGGAACTGATCT+TGG 0.318574 6_2:-79728695 Msa0930670:CDS
CTTCTGCCTTGGAACCCTTC+AGG 0.326027 6_2:-79726497 Msa0930670:intron
GATGGCCTAATAGTTGGATT+AGG 0.334457 6_2:+79723480 None:intergenic
CAACAGGCAGTGGCGGCATT+TGG 0.339764 6_2:+79724605 None:intergenic
TATGTCCATCTAACTCAAAA+TGG 0.345856 6_2:+79724876 None:intergenic
TAATGAAGCCAGGAAAATTA+AGG 0.352059 6_2:+79725108 None:intergenic
GGGTGGCATTGCTGTACTTT+TGG 0.352817 6_2:-79725891 Msa0930670:CDS
AGAAGAAGGAACCGATAATA+TGG 0.359308 6_2:-79724708 Msa0930670:three_prime_UTR
GAACTTACCTAAATTCTATT+AGG 0.360006 6_2:+79724550 None:intergenic
GGCTTCATTATAATGTGTAT+TGG 0.364749 6_2:-79725095 Msa0930670:three_prime_UTR
GCCTATATAGTTGGTGTTGT+TGG 0.365208 6_2:-79726598 Msa0930670:CDS
TTAGCTTACAATTAACTGAT+AGG 0.365879 6_2:+79723276 None:intergenic
ATGACATGATACTTATAGAT+TGG 0.369608 6_2:-79723620 Msa0930670:three_prime_UTR
TGTGCCCTAATCCAACTATT+AGG 0.379826 6_2:-79723485 Msa0930670:three_prime_UTR
GTTGACTTTCTCTCCATTAA+CGG 0.380344 6_2:-79725234 Msa0930670:three_prime_UTR
GAAGAAAACCACCATATTAT+CGG 0.380598 6_2:+79724697 None:intergenic
GGAACAAATGGTGATGGATA+TGG 0.390681 6_2:-79725803 Msa0930670:CDS
AGTGTTCCACCATTGTTTGA+TGG 0.394571 6_2:-79723414 Msa0930670:three_prime_UTR
AAGTTGTTAATGATTTCATT+AGG 0.396201 6_2:-79723542 Msa0930670:three_prime_UTR
TCTGTCTTTCATTAGTAGCT+TGG 0.401610 6_2:+79723821 None:intergenic
TTACTGGAACCTTTACCATT+GGG 0.402298 6_2:-79726041 Msa0930670:CDS
CGTGAAGCTTCAATTTATAC+AGG 0.408841 6_2:-79725631 Msa0930670:intron
GCATCGTCAACATCTTTAAA+GGG 0.410141 6_2:-79725991 Msa0930670:CDS
CACCGGCATTATTGCAGCAT+TGG 0.411749 6_2:-79725912 Msa0930670:CDS
TCTTTAACTATCTATCACTA+TGG 0.414438 6_2:-79725758 Msa0930670:CDS
CATGTACTTGCAGCTATTGA+TGG 0.416147 6_2:+79725269 None:intergenic
GCAACAGATGGCCTAATAGT+TGG 0.417698 6_2:+79723474 None:intergenic
TTGTTGAATGCAGTGAGCTT+GGG 0.419751 6_2:-79726721 Msa0930670:intron
CAACATCTTTAAAGGGTTTG+AGG 0.424624 6_2:-79725984 Msa0930670:CDS
CACATGGATCATTGTGATCA+AGG 0.425681 6_2:-79725861 Msa0930670:CDS
ATAAAATAAAGAGCAAGAAT+TGG 0.426186 6_2:+79723378 None:intergenic
AATGCCAGGCATCTCATAGA+AGG 0.427520 6_2:+79724633 None:intergenic
TAAAGGGTTTGAGGCCTTGG+AGG 0.436696 6_2:-79725975 Msa0930670:CDS
ACCGGCATTATTGCAGCATT+GGG 0.442443 6_2:-79725911 Msa0930670:CDS
AGCTCTATTTCTATCTGAAA+AGG 0.445760 6_2:-79725133 Msa0930670:three_prime_UTR
ATGGCCTAATAGTTGGATTA+GGG 0.445772 6_2:+79723481 None:intergenic
TTGACTTTCTCTCCATTAAC+GGG 0.446899 6_2:-79725233 Msa0930670:intron
ATTACTGGAACCTTTACCAT+TGG 0.446900 6_2:-79726042 Msa0930670:CDS
AGATCCTCGTTAATGGCAAC+AGG 0.447502 6_2:+79724589 None:intergenic
AACAAGTTGCAAGGAATGAA+TGG 0.449100 6_2:-79725824 Msa0930670:CDS
CCTTCACTGATGATAAAGTA+TGG 0.449579 6_2:+79727547 None:intergenic
GAAAATATCACACATTCTAA+TGG 0.451109 6_2:+79728716 None:intergenic
TAGGTTTGAGAGAATGACTA+TGG 0.451333 6_2:-79723523 Msa0930670:three_prime_UTR
TAATGTGTATTGGAATCGCT+TGG 0.452334 6_2:-79725085 Msa0930670:three_prime_UTR
TGACATGATACTTATAGATT+GGG 0.452945 6_2:-79723619 Msa0930670:three_prime_UTR
TCTCAACCTCACCAGCTGAT+AGG 0.454244 6_2:+79725704 None:intergenic
AGCTATAGTTTACTTGCAAA+AGG 0.459092 6_2:+79723870 None:intergenic
TGTACGATGGTGTTTAAACT+TGG 0.459476 6_2:+79723908 None:intergenic
GGTTCTATATTGGGCAAAAG+AGG 0.465154 6_2:-79723598 Msa0930670:three_prime_UTR
TCCAACAACACCAACTATAT+AGG 0.465181 6_2:+79726597 None:intergenic
ATATAGTTGGTGTTGTTGGA+TGG 0.468787 6_2:-79726594 Msa0930670:CDS
GGGATCATCCTCTTCTGCCT+TGG 0.469155 6_2:-79726508 Msa0930670:CDS
ATGGGGTACCAGTGTCAAGC+TGG 0.469313 6_2:-79726575 Msa0930670:CDS
AGAACAAGCACAAATGTTAG+AGG 0.472788 6_2:-79723795 Msa0930670:three_prime_UTR
CAATCAGCTGCCTATATAGT+TGG 0.487496 6_2:-79726607 Msa0930670:CDS
TATAGTTGGTGTTGTTGGAT+GGG 0.488603 6_2:-79726593 Msa0930670:CDS
TTATCATCAGTGAAGGTTCA+AGG 0.488974 6_2:-79727540 Msa0930670:CDS
CAACTATATAGGCAGCTGAT+TGG 0.489184 6_2:+79726608 None:intergenic
GAGTTGCATCAAGTTGAAGA+TGG 0.493345 6_2:-79723657 Msa0930670:three_prime_UTR
TATTCCTTCTATGAGATGCC+TGG 0.496545 6_2:-79724637 Msa0930670:three_prime_UTR
AACCTTTACCATTGGGGTGT+CGG 0.496844 6_2:-79726034 Msa0930670:CDS
TATGGAACTGATCTTGGATC+AGG 0.496920 6_2:-79728689 Msa0930670:CDS
AACAGAGCAAACATACTTTG+TGG 0.497241 6_2:-79723241 Msa0930670:three_prime_UTR
TCAAAACAGCAGACCCTGCT+TGG 0.497546 6_2:-79726651 Msa0930670:CDS
TCGTTAATGGCAACAGGCAG+TGG 0.497673 6_2:+79724595 None:intergenic
TGCACCTATCACTGCAAAAG+TGG 0.498118 6_2:-79723736 Msa0930670:three_prime_UTR
AAAGTGGATATCTACAGCTT+TGG 0.498218 6_2:-79723720 Msa0930670:three_prime_UTR
ATAGTTAAAGAAGGTTTGAT+CGG 0.500775 6_2:+79725770 None:intergenic
TGCAACACCTTTGCAACAGA+TGG 0.502830 6_2:+79723462 None:intergenic
ATCCGACACCCCAATGGTAA+AGG 0.503836 6_2:+79726032 None:intergenic
AAAGTTTCTATAGATAAAGA+AGG 0.504229 6_2:+79724825 None:intergenic
GGCATTTGGCTCATAATGCC+AGG 0.504404 6_2:+79724619 None:intergenic
ACAAATGTTAGAGGGACAAT+GGG 0.506091 6_2:-79723786 Msa0930670:three_prime_UTR
TTTGAGAGAATGACTATGGT+TGG 0.507037 6_2:-79723519 Msa0930670:three_prime_UTR
GGATCAGGCTCGACTGTCCC+TGG 0.507315 6_2:-79728674 Msa0930670:intron
AATGTGTATTGGAATCGCTT+GGG 0.508472 6_2:-79725084 Msa0930670:intron
GTTCTATATTGGGCAAAAGA+GGG 0.512150 6_2:-79723597 Msa0930670:three_prime_UTR
TGAAGCTTCACGAGCAGCCA+CGG 0.512400 6_2:+79725642 None:intergenic
CAAGGAATGAATGGAACAAA+TGG 0.513242 6_2:-79725815 Msa0930670:CDS
ATTGTTGAATGCAGTGAGCT+TGG 0.516397 6_2:-79726722 Msa0930670:intron
CTTCATACTAAGAAAGAAGA+AGG 0.534068 6_2:-79724722 Msa0930670:three_prime_UTR
CATTAACAACTTCAACATCA+TGG 0.537170 6_2:+79723553 None:intergenic
CACAAATGTTAGAGGGACAA+TGG 0.540064 6_2:-79723787 Msa0930670:three_prime_UTR
ATAGTTGGTGTTGTTGGATG+GGG 0.542051 6_2:-79726592 Msa0930670:CDS
ACATGAAGGTAAAACCAAGC+AGG 0.551666 6_2:+79726637 None:intergenic
CTTCAGACTCTCCTATCAGC+TGG 0.555801 6_2:-79725715 Msa0930670:CDS
ACATGGATCATTGTGATCAA+GGG 0.556201 6_2:-79725860 Msa0930670:CDS
TGTGATTGCAAGGTACTTGA+AGG 0.556632 6_2:-79726677 Msa0930670:CDS
TACTGGAACCTTTACCATTG+GGG 0.557881 6_2:-79726040 Msa0930670:CDS
GTCATACCTGAAGGGTTCCA+AGG 0.560992 6_2:+79726491 None:intergenic
ATGAATGGAACAAATGGTGA+TGG 0.561375 6_2:-79725809 Msa0930670:CDS
GACTCTCCTATCAGCTGGTG+AGG 0.561561 6_2:-79725710 Msa0930670:exon
GGCATTATTGCAGCATTGGG+TGG 0.561938 6_2:-79725908 Msa0930670:CDS
ATACACATTATAATGAAGCC+AGG 0.562281 6_2:+79725098 None:intergenic
GAAGGGTTCCAAGGCAGAAG+AGG 0.567005 6_2:+79726500 None:intergenic
ATCCGCTGCAGACACCTCCA+AGG 0.570140 6_2:+79725961 None:intergenic
GAAGCTTCACGAGCAGCCAC+GGG 0.570328 6_2:+79725643 None:intergenic
TAGTGATAGATAGTTAAAGA+AGG 0.572632 6_2:+79725761 None:intergenic
CAAGTTGAAGATGGAACAGA+AGG 0.575586 6_2:-79723648 Msa0930670:three_prime_UTR
AAATCTTGTGCAAAATGAGA+AGG 0.576750 6_2:-79727302 Msa0930670:CDS
TCCATCTAACTCAAAATGGA+AGG 0.576928 6_2:+79724880 None:intergenic
TGGGATATTTGGCACCAGAA+TGG 0.579107 6_2:-79723767 Msa0930670:three_prime_UTR
TATTCAACTCATAGAACACT+CGG 0.580467 6_2:-79726529 Msa0930670:intron
CTTTAATTGTGCTTCTGATG+AGG 0.580908 6_2:-79724800 Msa0930670:three_prime_UTR
GGCCTTGGAGGTGTCTGCAG+CGG 0.586267 6_2:-79725963 Msa0930670:CDS
TGTTGAATGCAGTGAGCTTG+GGG 0.586957 6_2:-79726720 Msa0930670:intron
CTGAAGAGTACCTTTGATGA+TGG 0.587300 6_2:+79725732 None:intergenic
CTTTGGGAGCTGTGATTGCA+AGG 0.589874 6_2:-79726687 Msa0930670:CDS
GTCACTTCCCAGCTTGACAC+TGG 0.590603 6_2:+79726567 None:intergenic
AACTGGAAGCATGCATACAC+CGG 0.591645 6_2:-79725929 Msa0930670:CDS
CTGATTGGCATGTAACATGA+AGG 0.594508 6_2:+79726623 None:intergenic
TCAGAGTATGATGCTTAGAG+TGG 0.595054 6_2:-79724905 Msa0930670:three_prime_UTR
GTTTGAAGTGTTATCAGACA+TGG 0.596212 6_2:+79725669 None:intergenic
TGGGGTACCAGTGTCAAGCT+GGG 0.597010 6_2:-79726574 Msa0930670:CDS
TATTAGGCCATCTGTTGCAA+AGG 0.598187 6_2:-79723469 Msa0930670:three_prime_UTR
TTCTATATTGGGCAAAAGAG+GGG 0.600711 6_2:-79723596 Msa0930670:three_prime_UTR
CCATACTTTATCATCAGTGA+AGG 0.601838 6_2:-79727547 Msa0930670:CDS
CATGGATCATTGTGATCAAG+GGG 0.602789 6_2:-79725859 Msa0930670:CDS
GTGCTTCTGATGAGGAAGAA+AGG 0.605953 6_2:-79724792 Msa0930670:three_prime_UTR
AAAATGTTTCCATCAAACAA+TGG 0.608622 6_2:+79723405 None:intergenic
AAATCAGAGAACAAGTTGCA+AGG 0.608640 6_2:-79725833 Msa0930670:CDS
ACCCAATGCTGCAATAATGC+CGG 0.613184 6_2:+79725910 None:intergenic
AAAGATGTTGACGATGCTGA+TGG 0.614883 6_2:+79725997 None:intergenic
AAGGTGTTGCAGATGTCGGA+AGG 0.614948 6_2:-79723450 Msa0930670:three_prime_UTR
TTGCGTATCCGACACCCCAA+TGG 0.617721 6_2:+79726026 None:intergenic
ACTATGGCCACCATCATCAA+AGG 0.619655 6_2:-79725742 Msa0930670:CDS
AAGCTGGGAAGTGACTTAGC+TGG 0.624386 6_2:-79726559 Msa0930670:intron
TGCAAAGGTGTTGCAGATGT+CGG 0.624440 6_2:-79723454 Msa0930670:three_prime_UTR
GTGGTCCTTAAATATGTGAG+AGG 0.625201 6_2:-79723222 Msa0930670:three_prime_UTR
GAACAAGCACAAATGTTAGA+GGG 0.627687 6_2:-79723794 Msa0930670:three_prime_UTR
CATGTAATGTCATACCTGAA+GGG 0.633570 6_2:+79726483 None:intergenic
GTTGAAGATGGAACAGAAGG+TGG 0.634859 6_2:-79723645 Msa0930670:three_prime_UTR
CATGAAGGTAAAACCAAGCA+GGG 0.639212 6_2:+79726638 None:intergenic
ATGTTTCCATCAAACAATGG+TGG 0.641806 6_2:+79723408 None:intergenic
TAGAATTTGAGGCAGTGGAG+GGG 0.643151 6_2:-79727331 Msa0930670:intron
TTAATGGCAACAGGCAGTGG+CGG 0.648108 6_2:+79724598 None:intergenic
AGAAGGAACCGATAATATGG+TGG 0.659981 6_2:-79724705 Msa0930670:three_prime_UTR
CTTGCAATCACAGCTCCCAA+AGG 0.665524 6_2:+79726688 None:intergenic
AAGAGTACCTTTGATGATGG+TGG 0.669893 6_2:+79725735 None:intergenic
ATTCAACTCATAGAACACTC+GGG 0.675546 6_2:-79726528 Msa0930670:intron
TAACACTTCAAACATGCCCG+TGG 0.679330 6_2:-79725659 Msa0930670:three_prime_UTR
AATGGAGAGAAAGTCAACAG+TGG 0.709474 6_2:+79725239 None:intergenic
ACTGCCTGTTGCCATTAACG+AGG 0.709980 6_2:-79724593 Msa0930670:three_prime_UTR
GAATGACTATGGTTGGACTG+TGG 0.741878 6_2:-79723512 Msa0930670:three_prime_UTR
ATATGCAAGAAAGTGTACGA+TGG 0.777994 6_2:+79723895 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAGTATATAAAGTATTA+GGG - chr6_2:79723630-79723649 Msa0930670:three_prime_UTR 10.0%
!! ACAAAAAAAAAAAAAACAAA+TGG + chr6_2:79727641-79727660 None:intergenic 10.0%
!!! CTAAAAGTATATAAAGTATT+AGG - chr6_2:79723629-79723648 Msa0930670:three_prime_UTR 15.0%
!!! TTTTTTGAAGTAATTTAGAA+TGG + chr6_2:79723815-79723834 None:intergenic 15.0%
!! AAGAATTAAGATTTAACTAA+AGG + chr6_2:79724032-79724051 None:intergenic 15.0%
!!! TTGTGTATATATTTTTTGTT+CGG - chr6_2:79724743-79724762 Msa0930670:three_prime_UTR 15.0%
!! TAGCATTTATAGAAAAAAAT+TGG + chr6_2:79726622-79726641 None:intergenic 15.0%
!!! ATGCAAATCATTTTAAAAAA+AGG + chr6_2:79727989-79728008 None:intergenic 15.0%
!!! TTCTCATATAATTTTTTCAA+AGG + chr6_2:79728054-79728073 None:intergenic 15.0%
!!! AAGAGTTAATTTTGTGAAAT+TGG - chr6_2:79723551-79723570 Msa0930670:three_prime_UTR 20.0%
!!! AGAGTTAATTTTGTGAAATT+GGG - chr6_2:79723552-79723571 Msa0930670:three_prime_UTR 20.0%
!! GTTATTATTGAATTGATACT+TGG - chr6_2:79723887-79723906 Msa0930670:three_prime_UTR 20.0%
!!! TGTTTCTTTTTTAGAATTTG+AGG - chr6_2:79724766-79724785 Msa0930670:three_prime_UTR 20.0%
!! TAATTCAGAACTGAATAAAT+CGG - chr6_2:79724876-79724895 Msa0930670:three_prime_UTR 20.0%
!! TAAGTTTATTGCTAATGATT+TGG - chr6_2:79724937-79724956 Msa0930670:intron 20.0%
!! TAAAATTCAAACTTGAAATG+TGG - chr6_2:79725045-79725064 Msa0930670:intron 20.0%
!! AAATCTCATTGTTATATCAT+TGG - chr6_2:79725126-79725145 Msa0930670:three_prime_UTR 20.0%
!!! TACATCTGATTATTTTTTTC+AGG - chr6_2:79725259-79725278 Msa0930670:three_prime_UTR 20.0%
!!! AAAAAGAAGTTTTAGACTTT+AGG + chr6_2:79726516-79726535 None:intergenic 20.0%
!! TTAAACAAAAGCTTGAAAAA+AGG + chr6_2:79726561-79726580 None:intergenic 20.0%
!!! CAAGCTTTTGTTTAAATTTA+TGG - chr6_2:79726566-79726585 Msa0930670:CDS 20.0%
!! AAGAAAGAATCATACAAATA+TGG + chr6_2:79727126-79727145 None:intergenic 20.0%
!! AAAGTTTCTATAGATAAAGA+AGG + chr6_2:79727286-79727305 None:intergenic 20.0%
!! ATTTCATTAAATAATGCACT+TGG + chr6_2:79727666-79727685 None:intergenic 20.0%
!!! ATTGATTTACCTAATTAGTT+TGG - chr6_2:79727741-79727760 Msa0930670:intron 20.0%
!!! TTGAAATCTTATTTTGTAGA+AGG - chr6_2:79728422-79728441 Msa0930670:intron 20.0%
!! AAGTTGTTAATGATTTCATT+AGG - chr6_2:79728566-79728585 Msa0930670:intron 20.0%
!! ATAAAATAAAGAGCAAGAAT+TGG + chr6_2:79728733-79728752 None:intergenic 20.0%
!! ATAAGTCACGAAATATATTT+CGG - chr6_2:79728778-79728797 Msa0930670:intron 20.0%
! AAGTGAGTATCTTGAAAATT+AGG + chr6_2:79723236-79723255 None:intergenic 25.0%
! TACTAAGAAATCAGTCAATT+CGG + chr6_2:79723290-79723309 None:intergenic 25.0%
! GAAAATATCACACATTCTAA+TGG + chr6_2:79723395-79723414 None:intergenic 25.0%
! AATAGTACTTATGTGCATAT+GGG + chr6_2:79723520-79723539 None:intergenic 25.0%
! TAATAGTACTTATGTGCATA+TGG + chr6_2:79723521-79723540 None:intergenic 25.0%
!! TTAATTTTGTGAAATTGGGT+GGG - chr6_2:79723556-79723575 Msa0930670:three_prime_UTR 25.0%
! ACACAAAAGTAAGTAAGATT+GGG + chr6_2:79724008-79724027 None:intergenic 25.0%
!!! AGAAGCATTTGTAAAATTGA+AGG + chr6_2:79724279-79724298 None:intergenic 25.0%
!! GTTGTAGAAAAGTATAATGA+TGG + chr6_2:79724374-79724393 None:intergenic 25.0%
! TCATTTGAATTATCCATAAC+AGG - chr6_2:79724442-79724461 Msa0930670:intron 25.0%
! TAATATCTTTACTCCTGTTA+TGG + chr6_2:79724458-79724477 None:intergenic 25.0%
! ACCTACTCTTATATATTTGT+TGG - chr6_2:79724506-79724525 Msa0930670:intron 25.0%
! CCTACTCTTATATATTTGTT+GGG - chr6_2:79724507-79724526 Msa0930670:intron 25.0%
!!! TATTGCTAATGATTTGGTTT+TGG - chr6_2:79724943-79724962 Msa0930670:intron 25.0%
!! ACTTCATTTTGTATGTTTGA+AGG - chr6_2:79725152-79725171 Msa0930670:intron 25.0%
!!! ATTTTAATTCTGACATCATG+GGG + chr6_2:79725179-79725198 None:intergenic 25.0%
!!! CATTTTAATTCTGACATCAT+GGG + chr6_2:79725180-79725199 None:intergenic 25.0%
!!! TCATTTTAATTCTGACATCA+TGG + chr6_2:79725181-79725200 None:intergenic 25.0%
! TGATGTCAGAATTAAAATGA+AGG - chr6_2:79725181-79725200 Msa0930670:intron 25.0%
! AGAATTAAAATGAAGGTTGT+TGG - chr6_2:79725188-79725207 Msa0930670:intron 25.0%
!! CTGGTTTACTTCATTTTATT+TGG - chr6_2:79725316-79725335 Msa0930670:intron 25.0%
!!! CTTCATTTTATTTGGTGATT+TGG - chr6_2:79725324-79725343 Msa0930670:intron 25.0%
!!! TTAATTGTTTTTCTGACTCA+TGG - chr6_2:79725363-79725382 Msa0930670:intron 25.0%
! ATAGTTAAAGAAGGTTTGAT+CGG + chr6_2:79726341-79726360 None:intergenic 25.0%
! TAGTGATAGATAGTTAAAGA+AGG + chr6_2:79726350-79726369 None:intergenic 25.0%
! TCTTTAACTATCTATCACTA+TGG - chr6_2:79726350-79726369 Msa0930670:intron 25.0%
!!! TGCTTTAAAAAAGAGAGAAA+AGG + chr6_2:79726751-79726770 None:intergenic 25.0%
! TAGAGCTGAAAAAAGAAAAT+GGG + chr6_2:79726962-79726981 None:intergenic 25.0%
! ATAGAGCTGAAAAAAGAAAA+TGG + chr6_2:79726963-79726982 None:intergenic 25.0%
! AGAAATAAAAATAGAGAGCA+TGG + chr6_2:79727076-79727095 None:intergenic 25.0%
! TTCTTTCTTGTCTGATTATA+TGG - chr6_2:79727137-79727156 Msa0930670:intron 25.0%
!!! GATTAATTTTTGTTTGCAGA+TGG - chr6_2:79727170-79727189 Msa0930670:intron 25.0%
!! CATTTTGCCTAATAGAATTT+AGG - chr6_2:79727551-79727570 Msa0930670:CDS 25.0%
! GAACTTACCTAAATTCTATT+AGG + chr6_2:79727561-79727580 None:intergenic 25.0%
! ATAGAATTTAGGTAAGTTCT+TGG - chr6_2:79727562-79727581 Msa0930670:CDS 25.0%
! CAATTAATTGAAACATAGTG+TGG + chr6_2:79727725-79727744 None:intergenic 25.0%
! TTCAAACTTCCAAACTAATT+AGG + chr6_2:79727753-79727772 None:intergenic 25.0%
! CTAATTTCAACTTATTAGGA+AGG + chr6_2:79727803-79727822 None:intergenic 25.0%
! CACACTAATTTCAACTTATT+AGG + chr6_2:79727807-79727826 None:intergenic 25.0%
!! CTAATAAGTTGAAATTAGTG+TGG - chr6_2:79727805-79727824 Msa0930670:intron 25.0%
!!! ATTAGTGTGGTTTTTCAATT+TGG - chr6_2:79727818-79727837 Msa0930670:intron 25.0%
! ATAGTATGAGCTAATAATCA+CGG - chr6_2:79727878-79727897 Msa0930670:intron 25.0%
!! TGCATATTCATTATGCATTT+TGG - chr6_2:79728004-79728023 Msa0930670:intron 25.0%
!! CTCAAAATTAAAGCATGTTT+TGG - chr6_2:79728259-79728278 Msa0930670:intron 25.0%
!!! AATTAAAGCATGTTTTGGAA+TGG - chr6_2:79728264-79728283 Msa0930670:intron 25.0%
! ATGACATGATACTTATAGAT+TGG - chr6_2:79728488-79728507 Msa0930670:intron 25.0%
! TGACATGATACTTATAGATT+GGG - chr6_2:79728489-79728508 Msa0930670:intron 25.0%
! TTATAGATTGGGTTCTATAT+TGG - chr6_2:79728500-79728519 Msa0930670:intron 25.0%
! TATAGATTGGGTTCTATATT+GGG - chr6_2:79728501-79728520 Msa0930670:intron 25.0%
! AAAATGTTTCCATCAAACAA+TGG + chr6_2:79728706-79728725 None:intergenic 25.0%
! TAAGTCACGAAATATATTTC+GGG - chr6_2:79728779-79728798 Msa0930670:intron 25.0%
!!! AATATATTTCGGGTTTTTCA+TGG - chr6_2:79728789-79728808 Msa0930670:intron 25.0%
! TTAGCTTACAATTAACTGAT+AGG + chr6_2:79728835-79728854 None:intergenic 25.0%
AACAAATTTCATATTCAGCC+AGG + chr6_2:79723266-79723285 None:intergenic 30.0%
! TGTGTGATATTTTCTGACTA+TGG - chr6_2:79723401-79723420 Msa0930670:three_prime_UTR 30.0%
AATGAAATAAAGACCTACCA+GGG + chr6_2:79723454-79723473 None:intergenic 30.0%
AAATGAAATAAAGACCTACC+AGG + chr6_2:79723455-79723474 None:intergenic 30.0%
! GTTAATTTTGTGAAATTGGG+TGG - chr6_2:79723555-79723574 Msa0930670:three_prime_UTR 30.0%
CTCTGTTCATACAAATTTGA+AGG + chr6_2:79723662-79723681 None:intergenic 30.0%
GCTTATATTCATGTGATTTC+TGG - chr6_2:79723720-79723739 Msa0930670:three_prime_UTR 30.0%
! TATATTCATGTGATTTCTGG+AGG - chr6_2:79723723-79723742 Msa0930670:three_prime_UTR 30.0%
GAATTGATACTTGGTTGTAT+TGG - chr6_2:79723896-79723915 Msa0930670:three_prime_UTR 30.0%
!! TTGGTTGTATTGGATTAGTA+TGG - chr6_2:79723906-79723925 Msa0930670:three_prime_UTR 30.0%
!! TGGTTGTATTGGATTAGTAT+GGG - chr6_2:79723907-79723926 Msa0930670:three_prime_UTR 30.0%
CACACAAAAGTAAGTAAGAT+TGG + chr6_2:79724009-79724028 None:intergenic 30.0%
TTTACAAATGCTTCTACTGT+TGG - chr6_2:79724284-79724303 Msa0930670:intron 30.0%
ACTGTTAGAATGAGTAAACA+TGG - chr6_2:79724314-79724333 Msa0930670:intron 30.0%
!!! ATGGTTTTGAAAGATAGACA+TGG - chr6_2:79724333-79724352 Msa0930670:intron 30.0%
CCCAACAAATATATAAGAGT+AGG + chr6_2:79724510-79724529 None:intergenic 30.0%
! TTATATATTTGTTGGGTTGC+AGG - chr6_2:79724514-79724533 Msa0930670:intron 30.0%
! GAATCCATCTTTGTAGTTTT+TGG - chr6_2:79724536-79724555 Msa0930670:intron 30.0%
! ACAATATTAGTTGCTTTGAC+AGG - chr6_2:79724635-79724654 Msa0930670:three_prime_UTR 30.0%
AAAAAGTGAAATACCTGAAG+CGG + chr6_2:79724668-79724687 None:intergenic 30.0%
CAACATCAGAACAACAAAAA+AGG + chr6_2:79724698-79724717 None:intergenic 30.0%
!!! TTTTTTAGAATTTGAGGCAG+TGG - chr6_2:79724772-79724791 Msa0930670:three_prime_UTR 30.0%
AAATCTTGTGCAAAATGAGA+AGG - chr6_2:79724806-79724825 Msa0930670:three_prime_UTR 30.0%
! GGTGATTTGGAAATTGATTA+AGG - chr6_2:79725337-79725356 Msa0930670:intron 30.0%
TATTCAACTCATAGAACACT+CGG - chr6_2:79725579-79725598 Msa0930670:intron 30.0%
CTATAAACTACTTACGTACA+AGG - chr6_2:79725794-79725813 Msa0930670:CDS 30.0%
CATAACATAGCATTCAAAAG+AGG + chr6_2:79725982-79726001 None:intergenic 30.0%
AAATTTCTGCTACTGAATTC+AGG - chr6_2:79726030-79726049 Msa0930670:CDS 30.0%
!!! AAGAAGTTTTAGACTTTAGG+AGG + chr6_2:79726513-79726532 None:intergenic 30.0%
AATTCCATTCCAAAACTTAC+AGG - chr6_2:79726700-79726719 Msa0930670:CDS 30.0%
! AAATTAGCTCCTGTAAGTTT+TGG + chr6_2:79726712-79726731 None:intergenic 30.0%
AGTGATCTGAAGAGAAAAAA+AGG + chr6_2:79726818-79726837 None:intergenic 30.0%
CTATAGTAATGTGAACATGA+TGG + chr6_2:79726922-79726941 None:intergenic 30.0%
!! AGCTCTATTTCTATCTGAAA+AGG - chr6_2:79726975-79726994 Msa0930670:intron 30.0%
TAATGAAGCCAGGAAAATTA+AGG + chr6_2:79727003-79727022 None:intergenic 30.0%
ATACACATTATAATGAAGCC+AGG + chr6_2:79727013-79727032 None:intergenic 30.0%
GGCTTCATTATAATGTGTAT+TGG - chr6_2:79727013-79727032 Msa0930670:intron 30.0%
TATGTCCATCTAACTCAAAA+TGG + chr6_2:79727235-79727254 None:intergenic 30.0%
CTTCATACTAAGAAAGAAGA+AGG - chr6_2:79727386-79727405 Msa0930670:intron 30.0%
GAAGAAAACCACCATATTAT+CGG + chr6_2:79727414-79727433 None:intergenic 30.0%
TAATTGAAACATAGTGTGGT+TGG + chr6_2:79727721-79727740 None:intergenic 30.0%
ACTTATTAGGAAGGATAAAG+AGG + chr6_2:79727794-79727813 None:intergenic 30.0%
ATCTCATTCAGCCAAAAATA+TGG + chr6_2:79727860-79727879 None:intergenic 30.0%
AGCTATAGTTTACTTGCAAA+AGG + chr6_2:79728241-79728260 None:intergenic 30.0%
CATTAACAACTTCAACATCA+TGG + chr6_2:79728558-79728577 None:intergenic 30.0%
GATTTCTTAGTAGAGACTAG+AGG - chr6_2:79723298-79723317 Msa0930670:three_prime_UTR 35.0%
TAGCATTCATTAGCTGTTAC+AGG - chr6_2:79723682-79723701 Msa0930670:three_prime_UTR 35.0%
TTCATTAGCTGTTACAGGTA+TGG - chr6_2:79723687-79723706 Msa0930670:three_prime_UTR 35.0%
!! TGTATTGGATTAGTATGGGT+TGG - chr6_2:79723911-79723930 Msa0930670:three_prime_UTR 35.0%
!! GTATTGGATTAGTATGGGTT+GGG - chr6_2:79723912-79723931 Msa0930670:three_prime_UTR 35.0%
!! TATTGGATTAGTATGGGTTG+GGG - chr6_2:79723913-79723932 Msa0930670:three_prime_UTR 35.0%
GGTTTCATCTAGCTAACATT+GGG + chr6_2:79724258-79724277 None:intergenic 35.0%
AGGTTTCATCTAGCTAACAT+TGG + chr6_2:79724259-79724278 None:intergenic 35.0%
CCTTCACTGATGATAAAGTA+TGG + chr6_2:79724564-79724583 None:intergenic 35.0%
CCATACTTTATCATCAGTGA+AGG - chr6_2:79724561-79724580 Msa0930670:three_prime_UTR 35.0%
TTATCATCAGTGAAGGTTCA+AGG - chr6_2:79724568-79724587 Msa0930670:three_prime_UTR 35.0%
! CTCATTTTGCACAAGATTTG+AGG + chr6_2:79724805-79724824 None:intergenic 35.0%
TTTACACAGTCAAGTGATTC+AGG - chr6_2:79724995-79725014 Msa0930670:intron 35.0%
CAATTGATCGATCTAAACCA+TGG + chr6_2:79725071-79725090 None:intergenic 35.0%
AAAAACTATCTACCTTGAGG+TGG + chr6_2:79725235-79725254 None:intergenic 35.0%
CAGAAAAACTATCTACCTTG+AGG + chr6_2:79725238-79725257 None:intergenic 35.0%
CAGAGACATATAGTTCATTG+CGG + chr6_2:79725299-79725318 None:intergenic 35.0%
TCCAACAACACCAACTATAT+AGG + chr6_2:79725514-79725533 None:intergenic 35.0%
!! ATATAGTTGGTGTTGTTGGA+TGG - chr6_2:79725514-79725533 Msa0930670:intron 35.0%
!! TATAGTTGGTGTTGTTGGAT+GGG - chr6_2:79725515-79725534 Msa0930670:intron 35.0%
ATTCAACTCATAGAACACTC+GGG - chr6_2:79725580-79725599 Msa0930670:intron 35.0%
CATGTAATGTCATACCTGAA+GGG + chr6_2:79725628-79725647 None:intergenic 35.0%
ACATGTAATGTCATACCTGA+AGG + chr6_2:79725629-79725648 None:intergenic 35.0%
!!! ACGTACAAGGTTTTGAATTG+TGG - chr6_2:79725807-79725826 Msa0930670:CDS 35.0%
! GGTTTTTGCTCTGTTATTAC+TGG - chr6_2:79726051-79726070 Msa0930670:CDS 35.0%
ATTACTGGAACCTTTACCAT+TGG - chr6_2:79726066-79726085 Msa0930670:intron 35.0%
TTACTGGAACCTTTACCATT+GGG - chr6_2:79726067-79726086 Msa0930670:intron 35.0%
AGCATCGTCAACATCTTTAA+AGG - chr6_2:79726116-79726135 Msa0930670:intron 35.0%
GCATCGTCAACATCTTTAAA+GGG - chr6_2:79726117-79726136 Msa0930670:intron 35.0%
! CAACATCTTTAAAGGGTTTG+AGG - chr6_2:79726124-79726143 Msa0930670:intron 35.0%
!! TACTTTTGGAAGCTTACACA+TGG - chr6_2:79726231-79726250 Msa0930670:intron 35.0%
ACATGGATCATTGTGATCAA+GGG - chr6_2:79726248-79726267 Msa0930670:intron 35.0%
AAATCAGAGAACAAGTTGCA+AGG - chr6_2:79726275-79726294 Msa0930670:intron 35.0%
AACAAGTTGCAAGGAATGAA+TGG - chr6_2:79726284-79726303 Msa0930670:intron 35.0%
CAAGGAATGAATGGAACAAA+TGG - chr6_2:79726293-79726312 Msa0930670:intron 35.0%
ATGAATGGAACAAATGGTGA+TGG - chr6_2:79726299-79726318 Msa0930670:intron 35.0%
! GTTTGAAGTGTTATCAGACA+TGG + chr6_2:79726442-79726461 None:intergenic 35.0%
CGTGAAGCTTCAATTTATAC+AGG - chr6_2:79726477-79726496 Msa0930670:intron 35.0%
! GTTGACTTTCTCTCCATTAA+CGG - chr6_2:79726874-79726893 Msa0930670:intron 35.0%
TTGACTTTCTCTCCATTAAC+GGG - chr6_2:79726875-79726894 Msa0930670:intron 35.0%
!!! AAAAGGCACCTTAATTTTCC+TGG - chr6_2:79726992-79727011 Msa0930670:intron 35.0%
TAATGTGTATTGGAATCGCT+TGG - chr6_2:79727023-79727042 Msa0930670:intron 35.0%
AATGTGTATTGGAATCGCTT+GGG - chr6_2:79727024-79727043 Msa0930670:intron 35.0%
!!! TCCTTCCATTTTGAGTTAGA+TGG - chr6_2:79727227-79727246 Msa0930670:intron 35.0%
TCCATCTAACTCAAAATGGA+AGG + chr6_2:79727231-79727250 None:intergenic 35.0%
CTTTAATTGTGCTTCTGATG+AGG - chr6_2:79727308-79727327 Msa0930670:CDS 35.0%
AGAAGAAGGAACCGATAATA+TGG - chr6_2:79727400-79727419 Msa0930670:intron 35.0%
TCTTGAAAGATCCTCGTTAA+TGG + chr6_2:79727529-79727548 None:intergenic 35.0%
! TTCAAGTGCAGCCATATTTT+TGG - chr6_2:79727846-79727865 Msa0930670:intron 35.0%
!! AGCAGTATTTTTGATCTAGC+AGG - chr6_2:79728147-79728166 Msa0930670:intron 35.0%
TCTGTCTTTCATTAGTAGCT+TGG + chr6_2:79728290-79728309 None:intergenic 35.0%
AGAACAAGCACAAATGTTAG+AGG - chr6_2:79728313-79728332 Msa0930670:intron 35.0%
GAACAAGCACAAATGTTAGA+GGG - chr6_2:79728314-79728333 Msa0930670:intron 35.0%
ACAAATGTTAGAGGGACAAT+GGG - chr6_2:79728322-79728341 Msa0930670:intron 35.0%
!! ATATCCACTTTTGCAGTGAT+AGG + chr6_2:79728379-79728398 None:intergenic 35.0%
AAAGTGGATATCTACAGCTT+TGG - chr6_2:79728388-79728407 Msa0930670:intron 35.0%
GTTCTATATTGGGCAAAAGA+GGG - chr6_2:79728511-79728530 Msa0930670:intron 35.0%
TTCTATATTGGGCAAAAGAG+GGG - chr6_2:79728512-79728531 Msa0930670:intron 35.0%
TAGGTTTGAGAGAATGACTA+TGG - chr6_2:79728585-79728604 Msa0930670:intron 35.0%
TTTGAGAGAATGACTATGGT+TGG - chr6_2:79728589-79728608 Msa0930670:intron 35.0%
ATGGCCTAATAGTTGGATTA+GGG + chr6_2:79728630-79728649 None:intergenic 35.0%
ATGTTTCCATCAAACAATGG+TGG + chr6_2:79728703-79728722 None:intergenic 35.0%
AACAGAGCAAACATACTTTG+TGG - chr6_2:79728867-79728886 Msa0930670:intron 35.0%
GACAACCTCTCACATATTTA+AGG + chr6_2:79728894-79728913 None:intergenic 35.0%
TCTGACTATGGAACTGATCT+TGG - chr6_2:79723413-79723432 Msa0930670:three_prime_UTR 40.0%
TATGGAACTGATCTTGGATC+AGG - chr6_2:79723419-79723438 Msa0930670:three_prime_UTR 40.0%
! TTTTGTGAAATTGGGTGGGT+AGG - chr6_2:79723560-79723579 Msa0930670:three_prime_UTR 40.0%
GTGGGTAGGAATTAAGCTAA+AGG - chr6_2:79723574-79723593 Msa0930670:three_prime_UTR 40.0%
TGTTAAAGCCAAAGACGACA+TGG - chr6_2:79723941-79723960 Msa0930670:three_prime_UTR 40.0%
ATCTACTACCATGTCGTCTT+TGG + chr6_2:79723952-79723971 None:intergenic 40.0%
AATTCTTGCAATTCCTGTCC+AGG - chr6_2:79724045-79724064 Msa0930670:intron 40.0%
! TCCAGGTAAAATGAAGCACT+GGG - chr6_2:79724062-79724081 Msa0930670:intron 40.0%
!! TAAAATGAAGCACTGGGAGA+TGG - chr6_2:79724068-79724087 Msa0930670:intron 40.0%
ACCAAACACAGTGAGATAGA+GGG + chr6_2:79724420-79724439 None:intergenic 40.0%
AACCAAACACAGTGAGATAG+AGG + chr6_2:79724421-79724440 None:intergenic 40.0%
GGTGCCAAAAACTACAAAGA+TGG + chr6_2:79724543-79724562 None:intergenic 40.0%
! TTTAGAATTTGAGGCAGTGG+AGG - chr6_2:79724775-79724794 Msa0930670:three_prime_UTR 40.0%
! TTAGAATTTGAGGCAGTGGA+GGG - chr6_2:79724776-79724795 Msa0930670:three_prime_UTR 40.0%
TCAAACTCTAAATGTGAGCG+TGG - chr6_2:79724908-79724927 Msa0930670:three_prime_UTR 40.0%
TCAAACTTGAAATGTGGCCA+TGG - chr6_2:79725051-79725070 Msa0930670:intron 40.0%
ATGAAGGTTGTTGGAATCTG+TGG - chr6_2:79725197-79725216 Msa0930670:intron 40.0%
TGAAGGTTGTTGGAATCTGT+GGG - chr6_2:79725198-79725217 Msa0930670:intron 40.0%
CGCAATGAACTATATGTCTC+TGG - chr6_2:79725297-79725316 Msa0930670:intron 40.0%
ATTGTTGAATGCAGTGAGCT+TGG - chr6_2:79725386-79725405 Msa0930670:intron 40.0%
TTGTTGAATGCAGTGAGCTT+GGG - chr6_2:79725387-79725406 Msa0930670:intron 40.0%
! TGTGATTGCAAGGTACTTGA+AGG - chr6_2:79725431-79725450 Msa0930670:intron 40.0%
CATGAAGGTAAAACCAAGCA+GGG + chr6_2:79725473-79725492 None:intergenic 40.0%
ACATGAAGGTAAAACCAAGC+AGG + chr6_2:79725474-79725493 None:intergenic 40.0%
CTGATTGGCATGTAACATGA+AGG + chr6_2:79725488-79725507 None:intergenic 40.0%
CAACTATATAGGCAGCTGAT+TGG + chr6_2:79725503-79725522 None:intergenic 40.0%
CAATCAGCTGCCTATATAGT+TGG - chr6_2:79725501-79725520 Msa0930670:intron 40.0%
!! GCCTATATAGTTGGTGTTGT+TGG - chr6_2:79725510-79725529 Msa0930670:intron 40.0%
!! ATAGTTGGTGTTGTTGGATG+GGG - chr6_2:79725516-79725535 Msa0930670:intron 40.0%
!!! AAGGTTTTGAATTGTGGCTG+TGG - chr6_2:79725813-79725832 Msa0930670:CDS 40.0%
AAAAGTTCGACACTGCAATC+TGG + chr6_2:79725939-79725958 None:intergenic 40.0%
TACTGGAACCTTTACCATTG+GGG - chr6_2:79726068-79726087 Msa0930670:intron 40.0%
AAAGATGTTGACGATGCTGA+TGG + chr6_2:79726114-79726133 None:intergenic 40.0%
CACATGGATCATTGTGATCA+AGG - chr6_2:79726247-79726266 Msa0930670:intron 40.0%
CATGGATCATTGTGATCAAG+GGG - chr6_2:79726249-79726268 Msa0930670:intron 40.0%
!! GGAACAAATGGTGATGGATA+TGG - chr6_2:79726305-79726324 Msa0930670:intron 40.0%
!! AAGAGTACCTTTGATGATGG+TGG + chr6_2:79726376-79726395 None:intergenic 40.0%
!! CTGAAGAGTACCTTTGATGA+TGG + chr6_2:79726379-79726398 None:intergenic 40.0%
!!! AGCTCCTGTAAGTTTTGGAA+TGG + chr6_2:79726707-79726726 None:intergenic 40.0%
CATGTACTTGCAGCTATTGA+TGG + chr6_2:79726842-79726861 None:intergenic 40.0%
AATGGAGAGAAAGTCAACAG+TGG + chr6_2:79726872-79726891 None:intergenic 40.0%
TCAGAGTATGATGCTTAGAG+TGG - chr6_2:79727203-79727222 Msa0930670:intron 40.0%
AGAAGGAACCGATAATATGG+TGG - chr6_2:79727403-79727422 Msa0930670:intron 40.0%
TATTCCTTCTATGAGATGCC+TGG - chr6_2:79727471-79727490 Msa0930670:intron 40.0%
CACAAATGTTAGAGGGACAA+TGG - chr6_2:79728321-79728340 Msa0930670:intron 40.0%
TAGAGGGACAATGGGATATT+TGG - chr6_2:79728330-79728349 Msa0930670:intron 40.0%
!! GAGTTGCATCAAGTTGAAGA+TGG - chr6_2:79728451-79728470 Msa0930670:intron 40.0%
! CAAGTTGAAGATGGAACAGA+AGG - chr6_2:79728460-79728479 Msa0930670:intron 40.0%
GGTTCTATATTGGGCAAAAG+AGG - chr6_2:79728510-79728529 Msa0930670:intron 40.0%
TGTGCCCTAATCCAACTATT+AGG - chr6_2:79728623-79728642 Msa0930670:intron 40.0%
GATGGCCTAATAGTTGGATT+AGG + chr6_2:79728631-79728650 None:intergenic 40.0%
TATTAGGCCATCTGTTGCAA+AGG - chr6_2:79728639-79728658 Msa0930670:intron 40.0%
AGTGTTCCACCATTGTTTGA+TGG - chr6_2:79728694-79728713 Msa0930670:CDS 40.0%
GTGGTCCTTAAATATGTGAG+AGG - chr6_2:79728886-79728905 Msa0930670:intron 40.0%
! GATACTCACTTGATTCGACC+TGG - chr6_2:79723245-79723264 Msa0930670:three_prime_UTR 45.0%
!! GTCGTCTTTGGCTTTAACAC+TGG + chr6_2:79723940-79723959 None:intergenic 45.0%
! GTGCTTCATTTTACCTGGAC+AGG + chr6_2:79724061-79724080 None:intergenic 45.0%
GTCCAGGTAAAATGAAGCAC+TGG - chr6_2:79724061-79724080 Msa0930670:intron 45.0%
! TCCCAGTGCTTCATTTTACC+TGG + chr6_2:79724066-79724085 None:intergenic 45.0%
TCCCTCTATCTCACTGTGTT+TGG - chr6_2:79724416-79724435 Msa0930670:intron 45.0%
! TAGAATTTGAGGCAGTGGAG+GGG - chr6_2:79724777-79724796 Msa0930670:three_prime_UTR 45.0%
ACTCTAAATGTGAGCGTGGT+TGG - chr6_2:79724912-79724931 Msa0930670:three_prime_UTR 45.0%
TGTTGAATGCAGTGAGCTTG+GGG - chr6_2:79725388-79725407 Msa0930670:intron 45.0%
TTGGGGATCTTGATGCCTTT+GGG - chr6_2:79725405-79725424 Msa0930670:intron 45.0%
AACCTTTACCATTGGGGTGT+CGG - chr6_2:79726074-79726093 Msa0930670:intron 45.0%
! CTTTAAAGGGTTTGAGGCCT+TGG - chr6_2:79726130-79726149 Msa0930670:intron 45.0%
! AACTGGAAGCATGCATACAC+CGG - chr6_2:79726179-79726198 Msa0930670:intron 45.0%
ACCGGCATTATTGCAGCATT+GGG - chr6_2:79726197-79726216 Msa0930670:intron 45.0%
ACCCAATGCTGCAATAATGC+CGG + chr6_2:79726201-79726220 None:intergenic 45.0%
ACTATGGCCACCATCATCAA+AGG - chr6_2:79726366-79726385 Msa0930670:intron 45.0%
TAACACTTCAAACATGCCCG+TGG - chr6_2:79726449-79726468 Msa0930670:intron 45.0%
ACTTTCCACTCACCCGTTAA+TGG + chr6_2:79726890-79726909 None:intergenic 45.0%
GTGCTTCTGATGAGGAAGAA+AGG - chr6_2:79727316-79727335 Msa0930670:CDS 45.0%
AATGCCAGGCATCTCATAGA+AGG + chr6_2:79727478-79727497 None:intergenic 45.0%
AGATCCTCGTTAATGGCAAC+AGG + chr6_2:79727522-79727541 None:intergenic 45.0%
! GATAAAGAGGTGTGACAGCA+AGG + chr6_2:79727781-79727800 None:intergenic 45.0%
TCACTGTCGAGAAAGATGCT+CGG + chr6_2:79727948-79727967 None:intergenic 45.0%
TGGGATATTTGGCACCAGAA+TGG - chr6_2:79728341-79728360 Msa0930670:intron 45.0%
!! GGTGCATTTTTGAGCCATTC+TGG + chr6_2:79728358-79728377 None:intergenic 45.0%
TGCACCTATCACTGCAAAAG+TGG - chr6_2:79728372-79728391 Msa0930670:intron 45.0%
GTTGAAGATGGAACAGAAGG+TGG - chr6_2:79728463-79728482 Msa0930670:intron 45.0%
GAATGACTATGGTTGGACTG+TGG - chr6_2:79728596-79728615 Msa0930670:intron 45.0%
GCAACAGATGGCCTAATAGT+TGG + chr6_2:79728637-79728656 None:intergenic 45.0%
TGCAACACCTTTGCAACAGA+TGG + chr6_2:79728649-79728668 None:intergenic 45.0%
!! TGCAAAGGTGTTGCAGATGT+CGG - chr6_2:79728654-79728673 Msa0930670:intron 45.0%
GACAGGTTTCTTTCCGCTTC+AGG - chr6_2:79724652-79724671 Msa0930670:three_prime_UTR 50.0%
GAGTGATGTTCACCACCTCA+AGG - chr6_2:79725220-79725239 Msa0930670:intron 50.0%
CTTGGGGATCTTGATGCCTT+TGG - chr6_2:79725404-79725423 Msa0930670:intron 50.0%
CTTGCAATCACAGCTCCCAA+AGG + chr6_2:79725423-79725442 None:intergenic 50.0%
! CTTTGGGAGCTGTGATTGCA+AGG - chr6_2:79725421-79725440 Msa0930670:intron 50.0%
TCAAAACAGCAGACCCTGCT+TGG - chr6_2:79725457-79725476 Msa0930670:intron 50.0%
AAGCTGGGAAGTGACTTAGC+TGG - chr6_2:79725549-79725568 Msa0930670:intron 50.0%
GTCATACCTGAAGGGTTCCA+AGG + chr6_2:79725620-79725639 None:intergenic 50.0%
ATCCGACACCCCAATGGTAA+AGG + chr6_2:79726079-79726098 None:intergenic 50.0%
! TAAAGGGTTTGAGGCCTTGG+AGG - chr6_2:79726133-79726152 Msa0930670:intron 50.0%
CACCGGCATTATTGCAGCAT+TGG - chr6_2:79726196-79726215 Msa0930670:intron 50.0%
! GGCATTATTGCAGCATTGGG+TGG - chr6_2:79726200-79726219 Msa0930670:intron 50.0%
! GGGTGGCATTGCTGTACTTT+TGG - chr6_2:79726217-79726236 Msa0930670:intron 50.0%
CTTCAGACTCTCCTATCAGC+TGG - chr6_2:79726393-79726412 Msa0930670:intron 50.0%
TCTCAACCTCACCAGCTGAT+AGG + chr6_2:79726407-79726426 None:intergenic 50.0%
! TCTCTCCATTAACGGGTGAG+TGG - chr6_2:79726882-79726901 Msa0930670:intron 50.0%
! GGCATTTGGCTCATAATGCC+AGG + chr6_2:79727492-79727511 None:intergenic 50.0%
TTAATGGCAACAGGCAGTGG+CGG + chr6_2:79727513-79727532 None:intergenic 50.0%
TCGTTAATGGCAACAGGCAG+TGG + chr6_2:79727516-79727535 None:intergenic 50.0%
ACTGCCTGTTGCCATTAACG+AGG - chr6_2:79727515-79727534 Msa0930670:intron 50.0%
!! AAGGTGTTGCAGATGTCGGA+AGG - chr6_2:79728658-79728677 Msa0930670:intron 50.0%
! ATGGGGTACCAGTGTCAAGC+TGG - chr6_2:79725533-79725552 Msa0930670:intron 55.0%
! TGGGGTACCAGTGTCAAGCT+GGG - chr6_2:79725534-79725553 Msa0930670:intron 55.0%
GTCACTTCCCAGCTTGACAC+TGG + chr6_2:79725544-79725563 None:intergenic 55.0%
GGGATCATCCTCTTCTGCCT+TGG - chr6_2:79725600-79725619 Msa0930670:intron 55.0%
GAAGGGTTCCAAGGCAGAAG+AGG + chr6_2:79725611-79725630 None:intergenic 55.0%
CTTCTGCCTTGGAACCCTTC+AGG - chr6_2:79725611-79725630 Msa0930670:intron 55.0%
TTGCGTATCCGACACCCCAA+TGG + chr6_2:79726085-79726104 None:intergenic 55.0%
CAGCGGATCGCTACGATAAC+TGG - chr6_2:79726162-79726181 Msa0930670:intron 55.0%
GACTCTCCTATCAGCTGGTG+AGG - chr6_2:79726398-79726417 Msa0930670:intron 55.0%
TGAAGCTTCACGAGCAGCCA+CGG + chr6_2:79726469-79726488 None:intergenic 55.0%
! CGAGAAAGATGCTCGGTGAG+TGG + chr6_2:79727941-79727960 None:intergenic 55.0%
ATCCGCTGCAGACACCTCCA+AGG + chr6_2:79726150-79726169 None:intergenic 60.0%
GAAGCTTCACGAGCAGCCAC+GGG + chr6_2:79726468-79726487 None:intergenic 60.0%
CAACAGGCAGTGGCGGCATT+TGG + chr6_2:79727506-79727525 None:intergenic 60.0%
! GATGCTCGGTGAGTGGTGAC+AGG + chr6_2:79727934-79727953 None:intergenic 60.0%
GGATCAGGCTCGACTGTCCC+TGG - chr6_2:79723434-79723453 Msa0930670:three_prime_UTR 65.0%
CAGGCTCGACTGTCCCTGGT+AGG - chr6_2:79723438-79723457 Msa0930670:three_prime_UTR 65.0%
!! GGCCTTGGAGGTGTCTGCAG+CGG - chr6_2:79726145-79726164 Msa0930670:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 79723215 79728915 79723215 ID=Msa0930670;Name=Msa0930670
chr6_2 mRNA 79723215 79728915 79723215 ID=Msa0930670-mRNA-1;Parent=Msa0930670;Name=Msa0930670-mRNA-1;_AED=0.15;_eAED=0.18;_QI=0|0.5|0.54|1|0.1|0.18|11|1345|266
chr6_2 exon 79723215 79723961 79723215 ID=Msa0930670-mRNA-1:exon:13835;Parent=Msa0930670-mRNA-1
chr6_2 exon 79724558 79724941 79724558 ID=Msa0930670-mRNA-1:exon:13834;Parent=Msa0930670-mRNA-1
chr6_2 exon 79725085 79725153 79725085 ID=Msa0930670-mRNA-1:exon:13833;Parent=Msa0930670-mRNA-1
chr6_2 exon 79725234 79725298 79725234 ID=Msa0930670-mRNA-1:exon:13832;Parent=Msa0930670-mRNA-1
chr6_2 exon 79725632 79726078 79725632 ID=Msa0930670-mRNA-1:exon:13831;Parent=Msa0930670-mRNA-1
chr6_2 exon 79726498 79726537 79726498 ID=Msa0930670-mRNA-1:exon:13830;Parent=Msa0930670-mRNA-1
chr6_2 exon 79726560 79726730 79726560 ID=Msa0930670-mRNA-1:exon:13829;Parent=Msa0930670-mRNA-1
chr6_2 exon 79727256 79727338 79727256 ID=Msa0930670-mRNA-1:exon:13828;Parent=Msa0930670-mRNA-1
chr6_2 exon 79727531 79727594 79727531 ID=Msa0930670-mRNA-1:exon:13827;Parent=Msa0930670-mRNA-1
chr6_2 exon 79728675 79728744 79728675 ID=Msa0930670-mRNA-1:exon:13826;Parent=Msa0930670-mRNA-1
chr6_2 exon 79728910 79728915 79728910 ID=Msa0930670-mRNA-1:exon:13825;Parent=Msa0930670-mRNA-1
chr6_2 CDS 79728910 79728915 79728910 ID=Msa0930670-mRNA-1:cds;Parent=Msa0930670-mRNA-1
chr6_2 CDS 79728675 79728744 79728675 ID=Msa0930670-mRNA-1:cds;Parent=Msa0930670-mRNA-1
chr6_2 CDS 79727531 79727594 79727531 ID=Msa0930670-mRNA-1:cds;Parent=Msa0930670-mRNA-1
chr6_2 CDS 79727256 79727338 79727256 ID=Msa0930670-mRNA-1:cds;Parent=Msa0930670-mRNA-1
chr6_2 CDS 79726560 79726730 79726560 ID=Msa0930670-mRNA-1:cds;Parent=Msa0930670-mRNA-1
chr6_2 CDS 79726498 79726537 79726498 ID=Msa0930670-mRNA-1:cds;Parent=Msa0930670-mRNA-1
chr6_2 CDS 79725712 79726078 79725712 ID=Msa0930670-mRNA-1:cds;Parent=Msa0930670-mRNA-1
chr6_2 three_prime_UTR 79725632 79725711 79725632 ID=Msa0930670-mRNA-1:three_prime_utr;Parent=Msa0930670-mRNA-1
chr6_2 three_prime_UTR 79725234 79725298 79725234 ID=Msa0930670-mRNA-1:three_prime_utr;Parent=Msa0930670-mRNA-1
chr6_2 three_prime_UTR 79725085 79725153 79725085 ID=Msa0930670-mRNA-1:three_prime_utr;Parent=Msa0930670-mRNA-1
chr6_2 three_prime_UTR 79724558 79724941 79724558 ID=Msa0930670-mRNA-1:three_prime_utr;Parent=Msa0930670-mRNA-1
chr6_2 three_prime_UTR 79723215 79723961 79723215 ID=Msa0930670-mRNA-1:three_prime_utr;Parent=Msa0930670-mRNA-1
Gene Sequence

>Msa0930670

ATGTGTATGAAGCCATTAGAATGTGTGATATTTTCTGACTATGGAACTGATCTTGGATCAGGCTCGACTGTCCCTGGAATCCATCTTTGTAGTTTTTGGCACCATACTTTATCATCAGTGAAGGTTCAAGGTGCATTAAATGGAGGGGAACCTCAAATCTTGTGCAAAATGAGAAGGAGAAATTTGAGAAGCAGATTTTGTTTGAAAAAGTTTACGCAGTCAATGAGCTTGGGGATCTTGATGCCTTTGGGAGCTGTGATTGCAAGGTACTTGAAGGTGTTCAAAACAGCAGACCCTGCTTGGTTTTACCTTCATGTTACATGCCAATCAGCTGCCTATATAGTTGGTGTTGTTGGATGGGGTACCAGTGTCAAGCTGGGAAGTGACTTAGCTGAACACTCGGGATCATCCTCTTCTGCCTTGGAACCCTTCAGGTTTTTGCTCTGTTATTACTGGAACCTTTACCATTGGGGTGTCGGATACGCAACTATAACCATCAGCATCGTCAACATCTTTAAAGGGTTTGAGGCCTTGGAGGTGTCTGCAGCGGATCGCTACGATAACTGGAAGCATGCATACACCGGCATTATTGCAGCATTGGGTGGCATTGCTGTACTTTTGGAAGCTTACACATGGATCATTGTGATCAAGGGGAAGAAATCAGAGAACAAGTTGCAAGGAATGAATGGAACAAATGGTGATGGATATGGTTTCTATAATCCGATCAAACCTTCTTTAACTATCTATCACTATGGCCACCATCATCAAAGGTACTCTTCAGACTCTCCTATCAGCTGGTGA

Protein sequence

>Msa0930670

MCMKPLECVIFSDYGTDLGSGSTVPGIHLCSFWHHTLSSVKVQGALNGGEPQILCKMRRRNLRSRFCLKKFTQSMSLGILMPLGAVIARYLKVFKTADPAWFYLHVTCQSAAYIVGVVGWGTSVKLGSDLAEHSGSSSSALEPFRFLLCYYWNLYHWGVGYATITISIVNIFKGFEALEVSAADRYDNWKHAYTGIIAALGGIAVLLEAYTWIIVIKGKKSENKLQGMNGTNGDGYGFYNPIKPSLTIYHYGHHHQRYSSDSPISW*