AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1224750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1224750 MtrunA17_Chr2g0290131 71.212 198 33 3 56 235 208 399 1.23e-82 253
Msa1224750 MtrunA17_Chr2g0278181 54.950 202 66 4 51 233 111 306 2.83e-56 182
Msa1224750 MtrunA17_Chr4g0076051 55.779 199 63 4 54 233 203 395 9.41e-56 184
Msa1224750 MtrunA17_Chr7g0234191 43.011 186 82 3 73 240 264 443 4.81e-35 130
Msa1224750 MtrunA17_Chr5g0447771 32.597 181 99 5 71 232 258 434 2.57e-21 92.4
Msa1224750 MtrunA17_Chr5g0444651 34.177 158 80 5 76 214 237 389 5.64e-21 91.3
Msa1224750 MtrunA17_Chr3g0101961 30.189 212 119 6 33 220 171 377 9.98e-18 82.0
Msa1224750 MtrunA17_Chr8g0347591 31.579 152 79 3 76 210 234 377 5.30e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1224750 AT3G25290.1 39.331 239 105 7 13 226 168 391 4.32e-46 159
Msa1224750 AT3G25290.2 39.331 239 105 7 13 226 168 391 4.32e-46 159
Msa1224750 AT5G47530.1 41.584 202 89 3 54 237 204 394 1.61e-43 152
Msa1224750 AT4G17280.1 42.347 196 84 3 54 231 212 396 4.05e-42 149
Msa1224750 AT4G12980.1 39.247 186 84 5 54 221 214 388 2.47e-37 135
Msa1224750 AT5G35735.1 39.423 208 85 6 54 233 204 398 2.55e-37 136
Msa1224750 AT3G59070.1 33.143 175 86 4 54 206 207 372 2.74e-20 90.1
Msa1224750 AT2G04850.1 28.415 183 100 5 71 230 223 397 8.85e-18 82.4

Find 184 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACAACCTCTCACATATTTA+AGG 0.143428 8_1:-89857474 None:intergenic
ACTTTCCACTCACCCGTTAA+TGG 0.208512 8_1:-89855475 None:intergenic
CTCAAAATTAAAGCATGTTT+TGG 0.214988 8_1:+89856845 Msa1224750:three_prime_UTR
AAGTGAGTATCTTGAAAATT+AGG 0.217915 8_1:-89851821 None:intergenic
TTATAGATTGGGTTCTATAT+TGG 0.218702 8_1:+89857086 Msa1224750:three_prime_UTR
GTTTATTTGACTTTGTATTT+TGG 0.226730 8_1:+89851454 Msa1224750:five_prime_UTR
CTTGGGGATCTTGATGCCTT+TGG 0.236519 8_1:+89853992 Msa1224750:CDS
TCTTGAAAGATCCTCGTTAA+TGG 0.242729 8_1:-89856114 None:intergenic
CAGCGGATCGCTACGATAAC+TGG 0.249372 8_1:+89854750 Msa1224750:CDS
ATAAGTCACGAAATATATTT+CGG 0.253236 8_1:+89857364 Msa1224750:three_prime_UTR
AGCATCGTCAACATCTTTAA+AGG 0.254895 8_1:+89854704 Msa1224750:CDS
TAGAGGGACAATGGGATATT+TGG 0.257183 8_1:+89856916 Msa1224750:three_prime_UTR
CTTTAAAGGGTTTGAGGCCT+TGG 0.269499 8_1:+89854718 Msa1224750:CDS
TATAGATTGGGTTCTATATT+GGG 0.279264 8_1:+89857087 Msa1224750:three_prime_UTR
TAAGTCACGAAATATATTTC+GGG 0.283711 8_1:+89857365 Msa1224750:three_prime_UTR
TGATACATTTGTATTTAGTT+TGG 0.287799 8_1:+89851511 Msa1224750:five_prime_UTR
CGATCGTATGTTGTTGGTTC+TGG 0.293847 8_1:+89851711 Msa1224750:five_prime_UTR
CTGATAGGAGAAAGAGAAAA+AGG 0.299654 8_1:-89857403 None:intergenic
TATGCCCATCTAACTCAAAA+TGG 0.304402 8_1:-89855820 None:intergenic
TTGGGGATCTTGATGCCTTT+GGG 0.305249 8_1:+89853993 Msa1224750:CDS
TCTGACTATGGAACTGATCT+TGG 0.318574 8_1:+89852001 Msa1224750:CDS
CTTCTGCCTTGGAACCCTTC+AGG 0.326027 8_1:+89854199 Msa1224750:CDS
GATGGCCTAATAGTTGGATT+AGG 0.334457 8_1:-89857214 None:intergenic
CAACAGGCAGTGGCGGCATT+TGG 0.339764 8_1:-89856091 None:intergenic
TAATGAAGCCAGGAAAATTA+AGG 0.352059 8_1:-89855588 None:intergenic
GGGTGGCATTGCTGTACTTT+TGG 0.352817 8_1:+89854805 Msa1224750:CDS
ATATTCTGTTATTTGAGATT+TGG 0.353028 8_1:+89851487 Msa1224750:five_prime_UTR
AGAAGAAGGAACCGATAATA+TGG 0.359308 8_1:+89855988 Msa1224750:three_prime_UTR
GAACTTACCTAAATTCTATT+AGG 0.360006 8_1:-89856146 None:intergenic
GGCTTCATTATAATGTGTAT+TGG 0.364749 8_1:+89855601 Msa1224750:three_prime_UTR
GCCTATATAGTTGGTGTTGT+TGG 0.365208 8_1:+89854098 Msa1224750:CDS
TTAGCTTACAATTAACTGAT+AGG 0.365879 8_1:-89857418 None:intergenic
ATGACATGATACTTATAGAT+TGG 0.369608 8_1:+89857074 Msa1224750:three_prime_UTR
TGTGCCCTAATCCAACTATT+AGG 0.379826 8_1:+89857209 Msa1224750:three_prime_UTR
GTTGACTTTCTCTCCATTAA+CGG 0.380344 8_1:+89855462 Msa1224750:three_prime_UTR
GAAGAAAACCACCATATTAT+CGG 0.380598 8_1:-89855999 None:intergenic
TACTAAGAAATCACTCAATT+CGG 0.389077 8_1:-89851875 None:intergenic
GGAACAAATGGTGATGGATA+TGG 0.390681 8_1:+89854893 Msa1224750:CDS
AGTGTTCCACCATTGTTTGA+TGG 0.394571 8_1:+89857280 Msa1224750:three_prime_UTR
AAGTTGTTAATGATTTCATT+AGG 0.396201 8_1:+89857152 Msa1224750:three_prime_UTR
TTCATGCAAGTGTCTAGATT+AGG 0.396489 8_1:+89851402 Msa1224750:five_prime_UTR
TTACTGGAACCTTTACCATT+GGG 0.402298 8_1:+89854655 Msa1224750:CDS
CGTGAAGCTTCAATTTATAC+AGG 0.408841 8_1:+89855065 Msa1224750:three_prime_UTR
GCATCGTCAACATCTTTAAA+GGG 0.410141 8_1:+89854705 Msa1224750:CDS
CACCGGCATTATTGCAGCAT+TGG 0.411749 8_1:+89854784 Msa1224750:CDS
CATGTACTTGCAGCTATTGA+TGG 0.416147 8_1:-89855427 None:intergenic
ATGTATGAATTGTGGTTATT+CGG 0.417285 8_1:+89851599 Msa1224750:five_prime_UTR
GCAACAGATGGCCTAATAGT+TGG 0.417698 8_1:-89857220 None:intergenic
TTGTTGAATGCAGTGAGCTT+GGG 0.419751 8_1:+89853975 Msa1224750:intron
CAACATCTTTAAAGGGTTTG+AGG 0.424624 8_1:+89854712 Msa1224750:CDS
CACATGGATCATTGTGATCA+AGG 0.425681 8_1:+89854835 Msa1224750:CDS
ATAAAATAAAGAGCAAGAAT+TGG 0.426186 8_1:-89857316 None:intergenic
AATGCCAGGCATCTCATAGA+AGG 0.427520 8_1:-89856063 None:intergenic
TCTGGTCGATCGTATGTTGT+TGG 0.435307 8_1:+89851705 Msa1224750:five_prime_UTR
TAAAGGGTTTGAGGCCTTGG+AGG 0.436696 8_1:+89854721 Msa1224750:CDS
ACCGGCATTATTGCAGCATT+GGG 0.442443 8_1:+89854785 Msa1224750:CDS
AGCTCTATTTCTATCTGAAA+AGG 0.445760 8_1:+89855563 Msa1224750:intron
ATGGCCTAATAGTTGGATTA+GGG 0.445772 8_1:-89857213 None:intergenic
TTGACTTTCTCTCCATTAAC+GGG 0.446899 8_1:+89855463 Msa1224750:three_prime_UTR
ATTACTGGAACCTTTACCAT+TGG 0.446900 8_1:+89854654 Msa1224750:CDS
AGATCCTCGTTAATGGCAAC+AGG 0.447502 8_1:-89856107 None:intergenic
AACAAGTTGCAAGGAATGAA+TGG 0.449100 8_1:+89854872 Msa1224750:CDS
CCTTCACTGATGATAAAGTA+TGG 0.449579 8_1:-89853149 None:intergenic
GAAAATATCACACATTCTAA+TGG 0.451109 8_1:-89851980 None:intergenic
TAGGTTTGAGAGAATGACTA+TGG 0.451333 8_1:+89857171 Msa1224750:three_prime_UTR
TAATGTGTATTGGAATCGCT+TGG 0.452334 8_1:+89855611 Msa1224750:three_prime_UTR
TGACATGATACTTATAGATT+GGG 0.452945 8_1:+89857075 Msa1224750:three_prime_UTR
TGGAGAAATTTGTTTCCCTA+TGG 0.453127 8_1:+89851731 Msa1224750:five_prime_UTR
TCTCAACCTCACCAGCTGAT+AGG 0.454244 8_1:-89854992 None:intergenic
TCTTTAACTAGCTATCACTA+TGG 0.455155 8_1:+89854938 Msa1224750:CDS
TCTGTCTTTCATTAGCAGCT+TGG 0.455797 8_1:-89856873 None:intergenic
AGCTATAGTTTACTTGCAAA+AGG 0.459092 8_1:-89856824 None:intergenic
TGTACGATGGTGTTTAAACT+TGG 0.459476 8_1:-89856786 None:intergenic
GGTTCTATATTGGGCAAAAG+AGG 0.465154 8_1:+89857096 Msa1224750:three_prime_UTR
TCCAACAACACCAACTATAT+AGG 0.465181 8_1:-89854099 None:intergenic
ATATAGTTGGTGTTGTTGGA+TGG 0.468787 8_1:+89854102 Msa1224750:CDS
GGGATCATCCTCTTCTGCCT+TGG 0.469155 8_1:+89854188 Msa1224750:CDS
ATGGGGTACCAGTGTCAAGC+TGG 0.469313 8_1:+89854121 Msa1224750:CDS
TTTACCGCTTAATAGAAATA+GGG 0.471870 8_1:+89851667 Msa1224750:five_prime_UTR
AGAACAAGCACAAATGTTAG+AGG 0.472788 8_1:+89856899 Msa1224750:three_prime_UTR
AACAAATTTCATATTCAGCC+AGG 0.487324 8_1:-89851851 None:intergenic
CAATCAGCTGCCTATATAGT+TGG 0.487496 8_1:+89854089 Msa1224750:CDS
TATAGTTGGTGTTGTTGGAT+GGG 0.488603 8_1:+89854103 Msa1224750:CDS
TTATCATCAGTGAAGGTTCA+AGG 0.488974 8_1:+89853156 Msa1224750:CDS
CAACTATATAGGCAGCTGAT+TGG 0.489184 8_1:-89854088 None:intergenic
TAATAAAATTAAAGTACCAT+AGG 0.491097 8_1:-89851747 None:intergenic
GAGTTGCATCAAGTTGAAGA+TGG 0.493345 8_1:+89857037 Msa1224750:three_prime_UTR
TATTCCTTCTATGAGATGCC+TGG 0.496545 8_1:+89856059 Msa1224750:three_prime_UTR
AACCTTTACCATTGGGGTGT+CGG 0.496844 8_1:+89854662 Msa1224750:CDS
TATGGAACTGATCTTGGATC+AGG 0.496920 8_1:+89852007 Msa1224750:CDS
CTAGTTAAAGAAGGTTTGAT+CGG 0.497373 8_1:-89854926 None:intergenic
TCAAAACAGCAGACCCTGCT+TGG 0.497546 8_1:+89854045 Msa1224750:CDS
TCGTTAATGGCAACAGGCAG+TGG 0.497673 8_1:-89856101 None:intergenic
TGCACCTATCACTGCAAAAG+TGG 0.498118 8_1:+89856958 Msa1224750:three_prime_UTR
AAAGTGGATATCTACAGCTT+TGG 0.498218 8_1:+89856974 Msa1224750:three_prime_UTR
CCACAATTCATACATGCATA+AGG 0.501021 8_1:-89851591 None:intergenic
TGCAACACCTTTGCAACAGA+TGG 0.502830 8_1:-89857232 None:intergenic
ATCCGACACCCCAATGGTAA+AGG 0.503836 8_1:-89854664 None:intergenic
AAAGTTTCTATAGATAAAGA+AGG 0.504229 8_1:-89855871 None:intergenic
GGCATTTGGCTCATAATGCC+AGG 0.504404 8_1:-89856077 None:intergenic
ACAAATGTTAGAGGGACAAT+GGG 0.506091 8_1:+89856908 Msa1224750:three_prime_UTR
TTTGAGAGAATGACTATGGT+TGG 0.507037 8_1:+89857175 Msa1224750:three_prime_UTR
GGATCAGGCTCGACTGTCCC+TGG 0.507315 8_1:+89852022 Msa1224750:CDS
AATGTGTATTGGAATCGCTT+GGG 0.508472 8_1:+89855612 Msa1224750:three_prime_UTR
GTTCTATATTGGGCAAAAGA+GGG 0.512150 8_1:+89857097 Msa1224750:three_prime_UTR
TGAAGCTTCACGAGCAGCCA+CGG 0.512400 8_1:-89855054 None:intergenic
AGAAGCTAAACTAATTGAGC+AGG 0.512408 8_1:-89851779 None:intergenic
CAAGGAATGAATGGAACAAA+TGG 0.513242 8_1:+89854881 Msa1224750:CDS
GGGTGTTACAGTGTGGGCTC+TGG 0.514266 8_1:+89851687 Msa1224750:five_prime_UTR
ATTGTTGAATGCAGTGAGCT+TGG 0.516397 8_1:+89853974 Msa1224750:intron
TGGGATATTTGGCACCTGAA+TGG 0.525828 8_1:+89856927 Msa1224750:three_prime_UTR
TAGTGATAGCTAGTTAAAGA+AGG 0.533712 8_1:-89854935 None:intergenic
TATATAATTCATAAACACTC+TGG 0.534024 8_1:-89851538 None:intergenic
CTTCATACTAAGAAAGAAGA+AGG 0.534068 8_1:+89855974 Msa1224750:three_prime_UTR
CATTAACAACTTCAACATCA+TGG 0.537170 8_1:-89857141 None:intergenic
CACAAATGTTAGAGGGACAA+TGG 0.540064 8_1:+89856907 Msa1224750:three_prime_UTR
ATAGTTGGTGTTGTTGGATG+GGG 0.542051 8_1:+89854104 Msa1224750:CDS
GAAATAGGGTGTTACAGTGT+GGG 0.548514 8_1:+89851681 Msa1224750:five_prime_UTR
AATAAAATTAAAGTACCATA+GGG 0.548909 8_1:-89851746 None:intergenic
ACATGAAGGTAAAACCAAGC+AGG 0.551666 8_1:-89854059 None:intergenic
TAGACACTTGCATGAACAAG+AGG 0.552778 8_1:-89851395 None:intergenic
CTTCAGACTCTCCTATCAGC+TGG 0.555801 8_1:+89854981 Msa1224750:CDS
ACATGGATCATTGTGATCAA+GGG 0.556201 8_1:+89854836 Msa1224750:CDS
TGTGATTGCAAGGTACTTGA+AGG 0.556632 8_1:+89854019 Msa1224750:CDS
TACTGGAACCTTTACCATTG+GGG 0.557881 8_1:+89854656 Msa1224750:CDS
GTCATACCTGAAGGGTTCCA+AGG 0.560992 8_1:-89854205 None:intergenic
ATGAATGGAACAAATGGTGA+TGG 0.561375 8_1:+89854887 Msa1224750:CDS
GACTCTCCTATCAGCTGGTG+AGG 0.561561 8_1:+89854986 Msa1224750:CDS
GGCATTATTGCAGCATTGGG+TGG 0.561938 8_1:+89854788 Msa1224750:CDS
ATACACATTATAATGAAGCC+AGG 0.562281 8_1:-89855598 None:intergenic
AACACCCTATTTCTATTAAG+CGG 0.564001 8_1:-89851671 None:intergenic
GAAGGGTTCCAAGGCAGAAG+AGG 0.567005 8_1:-89854196 None:intergenic
ATCCGCTGCAGACACCTCCA+AGG 0.570140 8_1:-89854735 None:intergenic
GAAGCTTCACGAGCAGCCAC+GGG 0.570328 8_1:-89855053 None:intergenic
CCCATCTAACTCAAAATGGA+AGG 0.572109 8_1:-89855816 None:intergenic
TATATTATTCCGCTGCTATG+TGG 0.574021 8_1:+89851557 Msa1224750:five_prime_UTR
CAAGTTGAAGATGGAACAGA+AGG 0.575586 8_1:+89857046 Msa1224750:three_prime_UTR
AAATCTTGTGCAAAATGAGA+AGG 0.576750 8_1:+89853394 Msa1224750:CDS
TTTGTCCTTAAATATGTGAG+AGG 0.578977 8_1:+89857469 Msa1224750:three_prime_UTR
TATTCAACTCATAGAACACT+CGG 0.580467 8_1:+89854167 Msa1224750:intron
CTTTAATTGTGCTTCTGATG+AGG 0.580908 8_1:+89855896 Msa1224750:three_prime_UTR
GGCCTTGGAGGTGTCTGCAG+CGG 0.586267 8_1:+89854733 Msa1224750:CDS
TGTTGAATGCAGTGAGCTTG+GGG 0.586957 8_1:+89853976 Msa1224750:intron
CTGAAGAGTACCTTTGATGA+TGG 0.587300 8_1:-89854964 None:intergenic
CTTTGGGAGCTGTGATTGCA+AGG 0.589874 8_1:+89854009 Msa1224750:CDS
GTCACTTCCCAGCTTGACAC+TGG 0.590603 8_1:-89854129 None:intergenic
AACTGGAAGCATGCATACAC+CGG 0.591645 8_1:+89854767 Msa1224750:CDS
CTGATTGGCATGTAACATGA+AGG 0.594508 8_1:-89854073 None:intergenic
TCAGAGTATGATGCTTAGAG+TGG 0.595054 8_1:+89855791 Msa1224750:three_prime_UTR
GTTTGAAGTGTTATCAGACA+TGG 0.596212 8_1:-89855027 None:intergenic
TGGGGTACCAGTGTCAAGCT+GGG 0.597010 8_1:+89854122 Msa1224750:CDS
CCTTATGCATGTATGAATTG+TGG 0.598128 8_1:+89851591 Msa1224750:five_prime_UTR
TATTAGGCCATCTGTTGCAA+AGG 0.598187 8_1:+89857225 Msa1224750:three_prime_UTR
TTCTATATTGGGCAAAAGAG+GGG 0.600711 8_1:+89857098 Msa1224750:three_prime_UTR
CCATACTTTATCATCAGTGA+AGG 0.601838 8_1:+89853149 Msa1224750:CDS
CATGGATCATTGTGATCAAG+GGG 0.602789 8_1:+89854837 Msa1224750:CDS
GTGCTTCTGATGAGGAAGAA+AGG 0.605953 8_1:+89855904 Msa1224750:three_prime_UTR
AAATCAGAGAACAAGTTGCA+AGG 0.608640 8_1:+89854863 Msa1224750:CDS
ACCCAATGCTGCAATAATGC+CGG 0.613184 8_1:-89854786 None:intergenic
AAAGATGTTGACGATGCTGA+TGG 0.614883 8_1:-89854699 None:intergenic
AAGGTGTTGCAGATGTCGGA+AGG 0.614948 8_1:+89857244 Msa1224750:three_prime_UTR
TTGCGTATCCGACACCCCAA+TGG 0.617721 8_1:-89854670 None:intergenic
ACTATGGCCACCATCATCAA+AGG 0.619655 8_1:+89854954 Msa1224750:CDS
AGAAATAGGGTGTTACAGTG+TGG 0.623380 8_1:+89851680 Msa1224750:five_prime_UTR
AAGCTGGGAAGTGACTTAGC+TGG 0.624386 8_1:+89854137 Msa1224750:CDS
TGCAAAGGTGTTGCAGATGT+CGG 0.624440 8_1:+89857240 Msa1224750:three_prime_UTR
GAACAAGCACAAATGTTAGA+GGG 0.627687 8_1:+89856900 Msa1224750:three_prime_UTR
CATGTAATGTCATACCTGAA+GGG 0.633570 8_1:-89854213 None:intergenic
GTTGAAGATGGAACAGAAGG+TGG 0.634859 8_1:+89857049 Msa1224750:three_prime_UTR
CATGAAGGTAAAACCAAGCA+GGG 0.639212 8_1:-89854058 None:intergenic
GATTTCTTAGTAGAGACTAG+AGG 0.640582 8_1:+89851886 Msa1224750:five_prime_UTR
TAGAATTTGAGGCAGTGGAG+GGG 0.643151 8_1:+89853365 Msa1224750:intron
TTAATGGCAACAGGCAGTGG+CGG 0.648108 8_1:-89856098 None:intergenic
GATACTCACTTGATTCGACC+TGG 0.656725 8_1:+89851833 Msa1224750:five_prime_UTR
AGAAGGAACCGATAATATGG+TGG 0.659981 8_1:+89855991 Msa1224750:three_prime_UTR
CTTGCAATCACAGCTCCCAA+AGG 0.665524 8_1:-89854008 None:intergenic
AAGAGTACCTTTGATGATGG+TGG 0.669893 8_1:-89854961 None:intergenic
ATTCAACTCATAGAACACTC+GGG 0.675546 8_1:+89854168 Msa1224750:intron
TAACACTTCAAACATGCCCG+TGG 0.679330 8_1:+89855037 Msa1224750:three_prime_UTR
AATGGAGAGAAAGTCAACAG+TGG 0.709474 8_1:-89855457 None:intergenic
ACTGCCTGTTGCCATTAACG+AGG 0.709980 8_1:+89856103 Msa1224750:three_prime_UTR
CATGTTATACCACATAGCAG+CGG 0.720373 8_1:-89851566 None:intergenic
GAATGACTATGGTTGGACTG+TGG 0.741878 8_1:+89857182 Msa1224750:three_prime_UTR
ATATGCAAGAAAGTGTACGA+TGG 0.777994 8_1:-89856799 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAGTATATAAAGTATTA+GGG + chr8_1:89852218-89852237 Msa1224750:intron 10.0%
!!! AATAAAATTAAAGTACCATA+GGG - chr8_1:89851749-89851768 None:intergenic 15.0%
!!! TAATAAAATTAAAGTACCAT+AGG - chr8_1:89851750-89851769 None:intergenic 15.0%
!!! CTAAAAGTATATAAAGTATT+AGG + chr8_1:89852217-89852236 Msa1224750:intron 15.0%
!!! TTTTTTGAAGTAATTTAGAA+TGG - chr8_1:89852403-89852422 None:intergenic 15.0%
!! AAGAATTAAGATTTAACTAA+AGG - chr8_1:89852620-89852639 None:intergenic 15.0%
!!! TTGTGTATATATTTTTTGTT+CGG + chr8_1:89853331-89853350 Msa1224750:intron 15.0%
!! TAAGTTTATTGTTAATGATT+TGG + chr8_1:89853525-89853544 Msa1224750:intron 15.0%
!! TAGCATTTATAGAAAAAAAT+TGG - chr8_1:89855210-89855229 None:intergenic 15.0%
!! CACAAAAAAAAAAAAACAAA+TGG - chr8_1:89856229-89856248 None:intergenic 15.0%
!!! TATGCAAATCATTTTAAAAA+AGG - chr8_1:89856576-89856595 None:intergenic 15.0%
!!! TTCTCATATAATTTTTTCAA+AGG - chr8_1:89856640-89856659 None:intergenic 15.0%
!!! GTTTATTTGACTTTGTATTT+TGG + chr8_1:89851454-89851473 Msa1224750:five_prime_UTR 20.0%
!!! ATATTCTGTTATTTGAGATT+TGG + chr8_1:89851487-89851506 Msa1224750:five_prime_UTR 20.0%
!! TGATACATTTGTATTTAGTT+TGG + chr8_1:89851511-89851530 Msa1224750:five_prime_UTR 20.0%
!! TATATAATTCATAAACACTC+TGG - chr8_1:89851541-89851560 None:intergenic 20.0%
!!! AAGAGTTAATTTTGTGAAAT+TGG + chr8_1:89852139-89852158 Msa1224750:intron 20.0%
!!! AGAGTTAATTTTGTGAAATT+GGG + chr8_1:89852140-89852159 Msa1224750:intron 20.0%
!! GTTATTATTGAATTGATACT+TGG + chr8_1:89852475-89852494 Msa1224750:intron 20.0%
!!! TGTTTCTTTTTTAGAATTTG+AGG + chr8_1:89853354-89853373 Msa1224750:intron 20.0%
!! TAATTCAGAACTGAATAAAT+CGG + chr8_1:89853464-89853483 Msa1224750:intron 20.0%
!!! TATTGTTAATGATTTGGTTT+TGG + chr8_1:89853531-89853550 Msa1224750:intron 20.0%
!! TAAAATTCAAACTTGAAATG+TGG + chr8_1:89853633-89853652 Msa1224750:intron 20.0%
!!! TACATCTGATTATTTTTTTC+AGG + chr8_1:89853847-89853866 Msa1224750:intron 20.0%
!!! AAAAAGAAGTTTTAGACTTT+AGG - chr8_1:89855104-89855123 None:intergenic 20.0%
!! TTAAACAAAAGCTTGAAAAA+AGG - chr8_1:89855149-89855168 None:intergenic 20.0%
!!! CAAGCTTTTGTTTAAATTTA+TGG + chr8_1:89855154-89855173 Msa1224750:intron 20.0%
!! AAGAAAGAATCATACAAATA+TGG - chr8_1:89855714-89855733 None:intergenic 20.0%
!! AAAGTTTCTATAGATAAAGA+AGG - chr8_1:89855874-89855893 None:intergenic 20.0%
!! ATTTCATTAAATAATGCACT+TGG - chr8_1:89856253-89856272 None:intergenic 20.0%
!!! ATTGATTTACCTAATTAGTT+TGG + chr8_1:89856328-89856347 Msa1224750:intron 20.0%
!!! TTGAAATCTTATTTTGTAGA+AGG + chr8_1:89857008-89857027 Msa1224750:three_prime_UTR 20.0%
!! AAGTTGTTAATGATTTCATT+AGG + chr8_1:89857152-89857171 Msa1224750:three_prime_UTR 20.0%
!!! AAAATTTTTCCATCAAACAA+TGG - chr8_1:89857292-89857311 None:intergenic 20.0%
!! ATAAAATAAAGAGCAAGAAT+TGG - chr8_1:89857319-89857338 None:intergenic 20.0%
!! ATAAGTCACGAAATATATTT+CGG + chr8_1:89857364-89857383 Msa1224750:three_prime_UTR 20.0%
! ATGTATGAATTGTGGTTATT+CGG + chr8_1:89851599-89851618 Msa1224750:five_prime_UTR 25.0%
!! TTTTACCGCTTAATAGAAAT+AGG + chr8_1:89851666-89851685 Msa1224750:five_prime_UTR 25.0%
! TTTACCGCTTAATAGAAATA+GGG + chr8_1:89851667-89851686 Msa1224750:five_prime_UTR 25.0%
! AAGTGAGTATCTTGAAAATT+AGG - chr8_1:89851824-89851843 None:intergenic 25.0%
! TACTAAGAAATCACTCAATT+CGG - chr8_1:89851878-89851897 None:intergenic 25.0%
! GAAAATATCACACATTCTAA+TGG - chr8_1:89851983-89852002 None:intergenic 25.0%
! AATAGTACTTATGTGCATAT+GGG - chr8_1:89852108-89852127 None:intergenic 25.0%
! TAATAGTACTTATGTGCATA+TGG - chr8_1:89852109-89852128 None:intergenic 25.0%
!! TTAATTTTGTGAAATTGGGT+GGG + chr8_1:89852144-89852163 Msa1224750:intron 25.0%
! ACACAAAAGTAAGTAAGATT+GGG - chr8_1:89852596-89852615 None:intergenic 25.0%
!!! AGAAGCATTTGTAAAATTGA+AGG - chr8_1:89852867-89852886 None:intergenic 25.0%
!! GTTGTAGAAAAGTATAATGA+TGG - chr8_1:89852962-89852981 None:intergenic 25.0%
! TCATTTGAATTATCCATAAC+AGG + chr8_1:89853030-89853049 Msa1224750:intron 25.0%
! TAATATCTTTACTCCTGTTA+TGG - chr8_1:89853046-89853065 None:intergenic 25.0%
! ACCTACTCTTATATATTTGT+TGG + chr8_1:89853094-89853113 Msa1224750:intron 25.0%
! CCTACTCTTATATATTTGTT+GGG + chr8_1:89853095-89853114 Msa1224750:intron 25.0%
! AAATCTCATTGGTATATCAT+TGG + chr8_1:89853714-89853733 Msa1224750:intron 25.0%
!! ACTTCATTTTGTATGTTTGA+AGG + chr8_1:89853740-89853759 Msa1224750:intron 25.0%
!! CTGGTTTACTTCATTTTATT+TGG + chr8_1:89853904-89853923 Msa1224750:intron 25.0%
!!! CTTCATTTTATTTGGTGATT+TGG + chr8_1:89853912-89853931 Msa1224750:intron 25.0%
!!! TTAATTGTTTTTCTGACTCA+TGG + chr8_1:89853951-89853970 Msa1224750:intron 25.0%
! AAATTTCTGCTATTGAATAC+AGG + chr8_1:89854618-89854637 Msa1224750:intron 25.0%
!!! TGCTTTAAAAAAGAGAGAAA+AGG - chr8_1:89855339-89855358 None:intergenic 25.0%
! TAGAGCTGAAAAAAGAAAAT+GGG - chr8_1:89855550-89855569 None:intergenic 25.0%
! ATAGAGCTGAAAAAAGAAAA+TGG - chr8_1:89855551-89855570 None:intergenic 25.0%
! AGAAATAAAAATAGAGAGCA+TGG - chr8_1:89855664-89855683 None:intergenic 25.0%
! TTCTTTCTTGTCTGATTATA+TGG + chr8_1:89855725-89855744 Msa1224750:intron 25.0%
!!! GATTAATTTTTGTTTGCAGA+TGG + chr8_1:89855758-89855777 Msa1224750:intron 25.0%
!! CATTTTGCCTAATAGAATTT+AGG + chr8_1:89856139-89856158 Msa1224750:three_prime_UTR 25.0%
! GAACTTACCTAAATTCTATT+AGG - chr8_1:89856149-89856168 None:intergenic 25.0%
! ATAGAATTTAGGTAAGTTCT+TGG + chr8_1:89856150-89856169 Msa1224750:intron 25.0%
! CAATTAATTGAAACATAGTG+TGG - chr8_1:89856312-89856331 None:intergenic 25.0%
! TTCAAACTTCCAAACTAATT+AGG - chr8_1:89856340-89856359 None:intergenic 25.0%
!!! ATTAGTGTGGTTTTTCAATT+TGG + chr8_1:89856405-89856424 Msa1224750:intron 25.0%
! ATAGTATGAGCTAATAATCA+CGG + chr8_1:89856465-89856484 Msa1224750:intron 25.0%
!! TGCATATTCATTATGCATTT+TGG + chr8_1:89856590-89856609 Msa1224750:intron 25.0%
!! CTCAAAATTAAAGCATGTTT+TGG + chr8_1:89856845-89856864 Msa1224750:three_prime_UTR 25.0%
!!! AATTAAAGCATGTTTTGGAA+TGG + chr8_1:89856850-89856869 Msa1224750:three_prime_UTR 25.0%
! ATGACATGATACTTATAGAT+TGG + chr8_1:89857074-89857093 Msa1224750:three_prime_UTR 25.0%
! TGACATGATACTTATAGATT+GGG + chr8_1:89857075-89857094 Msa1224750:three_prime_UTR 25.0%
! TTATAGATTGGGTTCTATAT+TGG + chr8_1:89857086-89857105 Msa1224750:three_prime_UTR 25.0%
! TATAGATTGGGTTCTATATT+GGG + chr8_1:89857087-89857106 Msa1224750:three_prime_UTR 25.0%
! TAAGTCACGAAATATATTTC+GGG + chr8_1:89857365-89857384 Msa1224750:three_prime_UTR 25.0%
!!! AATATATTTCGGGTTTTTCA+TGG + chr8_1:89857375-89857394 Msa1224750:three_prime_UTR 25.0%
! TTAGCTTACAATTAACTGAT+AGG - chr8_1:89857421-89857440 None:intergenic 25.0%
!! AACACCCTATTTCTATTAAG+CGG - chr8_1:89851674-89851693 None:intergenic 30.0%
AACAAATTTCATATTCAGCC+AGG - chr8_1:89851854-89851873 None:intergenic 30.0%
! TGTGTGATATTTTCTGACTA+TGG + chr8_1:89851989-89852008 Msa1224750:CDS 30.0%
AATGAAATAAAGACCTACCA+GGG - chr8_1:89852042-89852061 None:intergenic 30.0%
AAATGAAATAAAGACCTACC+AGG - chr8_1:89852043-89852062 None:intergenic 30.0%
! GTTAATTTTGTGAAATTGGG+TGG + chr8_1:89852143-89852162 Msa1224750:intron 30.0%
CTCTGTTCATACAAATTTGA+AGG - chr8_1:89852250-89852269 None:intergenic 30.0%
GCTTATATTCATGTGATTTC+TGG + chr8_1:89852308-89852327 Msa1224750:intron 30.0%
! TATATTCATGTGATTTCTGG+AGG + chr8_1:89852311-89852330 Msa1224750:intron 30.0%
GAATTGATACTTGGTTGTAA+TGG + chr8_1:89852484-89852503 Msa1224750:intron 30.0%
!! TTGGTTGTAATGGATTAGTA+TGG + chr8_1:89852494-89852513 Msa1224750:intron 30.0%
!! TGGTTGTAATGGATTAGTAT+GGG + chr8_1:89852495-89852514 Msa1224750:intron 30.0%
CACACAAAAGTAAGTAAGAT+TGG - chr8_1:89852597-89852616 None:intergenic 30.0%
TTTACAAATGCTTCTACTGT+TGG + chr8_1:89852872-89852891 Msa1224750:intron 30.0%
ACTGTTAGAATGAGTAAACA+TGG + chr8_1:89852902-89852921 Msa1224750:intron 30.0%
!!! ATGGTTTTGAAAGATAGACA+TGG + chr8_1:89852921-89852940 Msa1224750:intron 30.0%
CCCAACAAATATATAAGAGT+AGG - chr8_1:89853098-89853117 None:intergenic 30.0%
! TTATATATTTGTTGGGTTGC+AGG + chr8_1:89853102-89853121 Msa1224750:intron 30.0%
! GAATCCATCTTTGTAGTTTT+TGG + chr8_1:89853124-89853143 Msa1224750:CDS 30.0%
! ACAATATTAGTTGCTTTGAC+AGG + chr8_1:89853223-89853242 Msa1224750:intron 30.0%
AAAAAGTGAAATACCTGAAG+CGG - chr8_1:89853256-89853275 None:intergenic 30.0%
CAACATCAGAACAACAAAAA+AGG - chr8_1:89853286-89853305 None:intergenic 30.0%
!!! TTTTTTAGAATTTGAGGCAG+TGG + chr8_1:89853360-89853379 Msa1224750:intron 30.0%
AAATCTTGTGCAAAATGAGA+AGG + chr8_1:89853394-89853413 Msa1224750:CDS 30.0%
GCATAGAATCTAAATCTCAT+TGG + chr8_1:89853703-89853722 Msa1224750:intron 30.0%
!!! GTTTTAATTCTGACATCATG+GGG - chr8_1:89853767-89853786 None:intergenic 30.0%
!!! CGTTTTAATTCTGACATCAT+GGG - chr8_1:89853768-89853787 None:intergenic 30.0%
!!! TCGTTTTAATTCTGACATCA+TGG - chr8_1:89853769-89853788 None:intergenic 30.0%
TGATGTCAGAATTAAAACGA+AGG + chr8_1:89853769-89853788 Msa1224750:intron 30.0%
AGAATTAAAACGAAGGTTGT+TGG + chr8_1:89853776-89853795 Msa1224750:intron 30.0%
CAGAGACATATATTTCATTG+CGG - chr8_1:89853887-89853906 None:intergenic 30.0%
! GGTGATTTGGAAATTGATTA+AGG + chr8_1:89853925-89853944 Msa1224750:intron 30.0%
TATTCAACTCATAGAACACT+CGG + chr8_1:89854167-89854186 Msa1224750:intron 30.0%
CTATAAACTACTTACGTACA+AGG + chr8_1:89854382-89854401 Msa1224750:intron 30.0%
CATAACATAGCATTCAAAAG+AGG - chr8_1:89854570-89854589 None:intergenic 30.0%
CTAGTTAAAGAAGGTTTGAT+CGG - chr8_1:89854929-89854948 None:intergenic 30.0%
TAGTGATAGCTAGTTAAAGA+AGG - chr8_1:89854938-89854957 None:intergenic 30.0%
TCTTTAACTAGCTATCACTA+TGG + chr8_1:89854938-89854957 Msa1224750:CDS 30.0%
!!! AAGAAGTTTTAGACTTTAGG+AGG - chr8_1:89855101-89855120 None:intergenic 30.0%
AATTCCATTCCAAAACTTAC+AGG + chr8_1:89855288-89855307 Msa1224750:intron 30.0%
! AAATTAGCTCCTGTAAGTTT+TGG - chr8_1:89855300-89855319 None:intergenic 30.0%
AGTGATCTGAAGAGAAAAAA+AGG - chr8_1:89855406-89855425 None:intergenic 30.0%
CTATAGTAATGTGAACATGA+TGG - chr8_1:89855510-89855529 None:intergenic 30.0%
!! AGCTCTATTTCTATCTGAAA+AGG + chr8_1:89855563-89855582 Msa1224750:intron 30.0%
TAATGAAGCCAGGAAAATTA+AGG - chr8_1:89855591-89855610 None:intergenic 30.0%
ATACACATTATAATGAAGCC+AGG - chr8_1:89855601-89855620 None:intergenic 30.0%
GGCTTCATTATAATGTGTAT+TGG + chr8_1:89855601-89855620 Msa1224750:three_prime_UTR 30.0%
CTTCATACTAAGAAAGAAGA+AGG + chr8_1:89855974-89855993 Msa1224750:three_prime_UTR 30.0%
GAAGAAAACCACCATATTAT+CGG - chr8_1:89856002-89856021 None:intergenic 30.0%
TAATTGAAACATAGTGTGGT+TGG - chr8_1:89856308-89856327 None:intergenic 30.0%
ATCTCATTCAGCCAAAAATA+TGG - chr8_1:89856447-89856466 None:intergenic 30.0%
AGCTATAGTTTACTTGCAAA+AGG - chr8_1:89856827-89856846 None:intergenic 30.0%
CATTAACAACTTCAACATCA+TGG - chr8_1:89857144-89857163 None:intergenic 30.0%
! ATTTTTCCATCAAACAATGG+TGG - chr8_1:89857289-89857308 None:intergenic 30.0%
TTTGTCCTTAAATATGTGAG+AGG + chr8_1:89857469-89857488 Msa1224750:three_prime_UTR 30.0%
TTCATGCAAGTGTCTAGATT+AGG + chr8_1:89851402-89851421 Msa1224750:five_prime_UTR 35.0%
TCATGCAAGTGTCTAGATTA+GGG + chr8_1:89851403-89851422 Msa1224750:intron 35.0%
TATATTATTCCGCTGCTATG+TGG + chr8_1:89851557-89851576 Msa1224750:five_prime_UTR 35.0%
CCACAATTCATACATGCATA+AGG - chr8_1:89851594-89851613 None:intergenic 35.0%
CCTTATGCATGTATGAATTG+TGG + chr8_1:89851591-89851610 Msa1224750:five_prime_UTR 35.0%
! TGGAGAAATTTGTTTCCCTA+TGG + chr8_1:89851731-89851750 Msa1224750:five_prime_UTR 35.0%
AGAAGCTAAACTAATTGAGC+AGG - chr8_1:89851782-89851801 None:intergenic 35.0%
GATTTCTTAGTAGAGACTAG+AGG + chr8_1:89851886-89851905 Msa1224750:five_prime_UTR 35.0%
TAGCATTCATTAGCTGTTAC+AGG + chr8_1:89852270-89852289 Msa1224750:intron 35.0%
TTCATTAGCTGTTACAGGTA+TGG + chr8_1:89852275-89852294 Msa1224750:intron 35.0%
!! TGTAATGGATTAGTATGGGT+TGG + chr8_1:89852499-89852518 Msa1224750:intron 35.0%
!! GTAATGGATTAGTATGGGTT+GGG + chr8_1:89852500-89852519 Msa1224750:intron 35.0%
!! TAATGGATTAGTATGGGTTG+GGG + chr8_1:89852501-89852520 Msa1224750:intron 35.0%
GGTTTCATCTAGCTAACATT+GGG - chr8_1:89852846-89852865 None:intergenic 35.0%
AGGTTTCATCTAGCTAACAT+TGG - chr8_1:89852847-89852866 None:intergenic 35.0%
CCTTCACTGATGATAAAGTA+TGG - chr8_1:89853152-89853171 None:intergenic 35.0%
CCATACTTTATCATCAGTGA+AGG + chr8_1:89853149-89853168 Msa1224750:CDS 35.0%
TTATCATCAGTGAAGGTTCA+AGG + chr8_1:89853156-89853175 Msa1224750:CDS 35.0%
! CTCATTTTGCACAAGATTTG+AGG - chr8_1:89853393-89853412 None:intergenic 35.0%
TTTACACAGTCAAGTGATTC+AGG + chr8_1:89853583-89853602 Msa1224750:intron 35.0%
CAATTGATCGATCTAAACCA+TGG - chr8_1:89853659-89853678 None:intergenic 35.0%
AAAAACTATCTACCTTGAGG+TGG - chr8_1:89853823-89853842 None:intergenic 35.0%
CAGAAAAACTATCTACCTTG+AGG - chr8_1:89853826-89853845 None:intergenic 35.0%
CGCAATGAAATATATGTCTC+TGG + chr8_1:89853885-89853904 Msa1224750:intron 35.0%
TCCAACAACACCAACTATAT+AGG - chr8_1:89854102-89854121 None:intergenic 35.0%
!! ATATAGTTGGTGTTGTTGGA+TGG + chr8_1:89854102-89854121 Msa1224750:CDS 35.0%
!! TATAGTTGGTGTTGTTGGAT+GGG + chr8_1:89854103-89854122 Msa1224750:CDS 35.0%
ATTCAACTCATAGAACACTC+GGG + chr8_1:89854168-89854187 Msa1224750:intron 35.0%
CATGTAATGTCATACCTGAA+GGG - chr8_1:89854216-89854235 None:intergenic 35.0%
ACATGTAATGTCATACCTGA+AGG - chr8_1:89854217-89854236 None:intergenic 35.0%
!!! ACGTACAAGGTTTTGAATTG+TGG + chr8_1:89854395-89854414 Msa1224750:intron 35.0%
! GGTTTTTGCTCTGTTATTAC+TGG + chr8_1:89854639-89854658 Msa1224750:intron 35.0%
ATTACTGGAACCTTTACCAT+TGG + chr8_1:89854654-89854673 Msa1224750:CDS 35.0%
TTACTGGAACCTTTACCATT+GGG + chr8_1:89854655-89854674 Msa1224750:CDS 35.0%
AGCATCGTCAACATCTTTAA+AGG + chr8_1:89854704-89854723 Msa1224750:CDS 35.0%
GCATCGTCAACATCTTTAAA+GGG + chr8_1:89854705-89854724 Msa1224750:CDS 35.0%
! CAACATCTTTAAAGGGTTTG+AGG + chr8_1:89854712-89854731 Msa1224750:CDS 35.0%
!! TACTTTTGGAAGCTTACACA+TGG + chr8_1:89854819-89854838 Msa1224750:CDS 35.0%
ACATGGATCATTGTGATCAA+GGG + chr8_1:89854836-89854855 Msa1224750:CDS 35.0%
AAATCAGAGAACAAGTTGCA+AGG + chr8_1:89854863-89854882 Msa1224750:CDS 35.0%
AACAAGTTGCAAGGAATGAA+TGG + chr8_1:89854872-89854891 Msa1224750:CDS 35.0%
CAAGGAATGAATGGAACAAA+TGG + chr8_1:89854881-89854900 Msa1224750:CDS 35.0%
ATGAATGGAACAAATGGTGA+TGG + chr8_1:89854887-89854906 Msa1224750:CDS 35.0%
! GTTTGAAGTGTTATCAGACA+TGG - chr8_1:89855030-89855049 None:intergenic 35.0%
CGTGAAGCTTCAATTTATAC+AGG + chr8_1:89855065-89855084 Msa1224750:three_prime_UTR 35.0%
! GTTGACTTTCTCTCCATTAA+CGG + chr8_1:89855462-89855481 Msa1224750:three_prime_UTR 35.0%
TTGACTTTCTCTCCATTAAC+GGG + chr8_1:89855463-89855482 Msa1224750:three_prime_UTR 35.0%
!!! AAAAGGCACCTTAATTTTCC+TGG + chr8_1:89855580-89855599 Msa1224750:three_prime_UTR 35.0%
TAATGTGTATTGGAATCGCT+TGG + chr8_1:89855611-89855630 Msa1224750:three_prime_UTR 35.0%
AATGTGTATTGGAATCGCTT+GGG + chr8_1:89855612-89855631 Msa1224750:three_prime_UTR 35.0%
!!! TCCTTCCATTTTGAGTTAGA+TGG + chr8_1:89855815-89855834 Msa1224750:three_prime_UTR 35.0%
!!! CCTTCCATTTTGAGTTAGAT+GGG + chr8_1:89855816-89855835 Msa1224750:three_prime_UTR 35.0%
TATGCCCATCTAACTCAAAA+TGG - chr8_1:89855823-89855842 None:intergenic 35.0%
CTTTAATTGTGCTTCTGATG+AGG + chr8_1:89855896-89855915 Msa1224750:three_prime_UTR 35.0%
AGAAGAAGGAACCGATAATA+TGG + chr8_1:89855988-89856007 Msa1224750:three_prime_UTR 35.0%
TCTTGAAAGATCCTCGTTAA+TGG - chr8_1:89856117-89856136 None:intergenic 35.0%
! TTCAAGTGCAGCCATATTTT+TGG + chr8_1:89856433-89856452 Msa1224750:intron 35.0%
!! AGCAGTATTTTTGATCTAGC+AGG + chr8_1:89856733-89856752 Msa1224750:intron 35.0%
TGTACGATGGTGTTTAAACT+TGG - chr8_1:89856789-89856808 None:intergenic 35.0%
! ATATGCAAGAAAGTGTACGA+TGG - chr8_1:89856802-89856821 None:intergenic 35.0%
AGAACAAGCACAAATGTTAG+AGG + chr8_1:89856899-89856918 Msa1224750:three_prime_UTR 35.0%
GAACAAGCACAAATGTTAGA+GGG + chr8_1:89856900-89856919 Msa1224750:three_prime_UTR 35.0%
ACAAATGTTAGAGGGACAAT+GGG + chr8_1:89856908-89856927 Msa1224750:three_prime_UTR 35.0%
!! ATATCCACTTTTGCAGTGAT+AGG - chr8_1:89856965-89856984 None:intergenic 35.0%
AAAGTGGATATCTACAGCTT+TGG + chr8_1:89856974-89856993 Msa1224750:three_prime_UTR 35.0%
GTTCTATATTGGGCAAAAGA+GGG + chr8_1:89857097-89857116 Msa1224750:three_prime_UTR 35.0%
TTCTATATTGGGCAAAAGAG+GGG + chr8_1:89857098-89857117 Msa1224750:three_prime_UTR 35.0%
TAGGTTTGAGAGAATGACTA+TGG + chr8_1:89857171-89857190 Msa1224750:three_prime_UTR 35.0%
TTTGAGAGAATGACTATGGT+TGG + chr8_1:89857175-89857194 Msa1224750:three_prime_UTR 35.0%
ATGGCCTAATAGTTGGATTA+GGG - chr8_1:89857216-89857235 None:intergenic 35.0%
CTGATAGGAGAAAGAGAAAA+AGG - chr8_1:89857406-89857425 None:intergenic 35.0%
GACAACCTCTCACATATTTA+AGG - chr8_1:89857477-89857496 None:intergenic 35.0%
TAGACACTTGCATGAACAAG+AGG - chr8_1:89851398-89851417 None:intergenic 40.0%
CATGTTATACCACATAGCAG+CGG - chr8_1:89851569-89851588 None:intergenic 40.0%
! AGAAATAGGGTGTTACAGTG+TGG + chr8_1:89851680-89851699 Msa1224750:five_prime_UTR 40.0%
! GAAATAGGGTGTTACAGTGT+GGG + chr8_1:89851681-89851700 Msa1224750:five_prime_UTR 40.0%
TCTGACTATGGAACTGATCT+TGG + chr8_1:89852001-89852020 Msa1224750:CDS 40.0%
TATGGAACTGATCTTGGATC+AGG + chr8_1:89852007-89852026 Msa1224750:CDS 40.0%
! TTTTGTGAAATTGGGTGGGT+AGG + chr8_1:89852148-89852167 Msa1224750:intron 40.0%
GTGGGTAGGAATTAAGCTAA+AGG + chr8_1:89852162-89852181 Msa1224750:intron 40.0%
TGTTAAAGCCAAAGACGACA+TGG + chr8_1:89852529-89852548 Msa1224750:intron 40.0%
ATCTACTACCATGTCGTCTT+TGG - chr8_1:89852540-89852559 None:intergenic 40.0%
AATTCTTGCAATTCCTGTCC+AGG + chr8_1:89852633-89852652 Msa1224750:intron 40.0%
! TCCAGGTAAAATGAAGCACT+GGG + chr8_1:89852650-89852669 Msa1224750:intron 40.0%
!! TAAAATGAAGCACTGGGAGA+TGG + chr8_1:89852656-89852675 Msa1224750:intron 40.0%
GGTGCCAAAAACTACAAAGA+TGG - chr8_1:89853131-89853150 None:intergenic 40.0%
! TTTAGAATTTGAGGCAGTGG+AGG + chr8_1:89853363-89853382 Msa1224750:intron 40.0%
! TTAGAATTTGAGGCAGTGGA+GGG + chr8_1:89853364-89853383 Msa1224750:intron 40.0%
TCAAACTCTAAATGTGAGCG+TGG + chr8_1:89853496-89853515 Msa1224750:intron 40.0%
TCAAACTTGAAATGTGGCCA+TGG + chr8_1:89853639-89853658 Msa1224750:intron 40.0%
ATTGTTGAATGCAGTGAGCT+TGG + chr8_1:89853974-89853993 Msa1224750:intron 40.0%
TTGTTGAATGCAGTGAGCTT+GGG + chr8_1:89853975-89853994 Msa1224750:intron 40.0%
! TGTGATTGCAAGGTACTTGA+AGG + chr8_1:89854019-89854038 Msa1224750:CDS 40.0%
CATGAAGGTAAAACCAAGCA+GGG - chr8_1:89854061-89854080 None:intergenic 40.0%
ACATGAAGGTAAAACCAAGC+AGG - chr8_1:89854062-89854081 None:intergenic 40.0%
CTGATTGGCATGTAACATGA+AGG - chr8_1:89854076-89854095 None:intergenic 40.0%
CAACTATATAGGCAGCTGAT+TGG - chr8_1:89854091-89854110 None:intergenic 40.0%
CAATCAGCTGCCTATATAGT+TGG + chr8_1:89854089-89854108 Msa1224750:CDS 40.0%
!! GCCTATATAGTTGGTGTTGT+TGG + chr8_1:89854098-89854117 Msa1224750:CDS 40.0%
!! ATAGTTGGTGTTGTTGGATG+GGG + chr8_1:89854104-89854123 Msa1224750:CDS 40.0%
AACAACAGTTGAAGTTGCGT+CGG - chr8_1:89854344-89854363 None:intergenic 40.0%
!!! AAGGTTTTGAATTGTGGCTG+TGG + chr8_1:89854401-89854420 Msa1224750:intron 40.0%
AAAAGTTCGACACTGCAATC+TGG - chr8_1:89854527-89854546 None:intergenic 40.0%
TACTGGAACCTTTACCATTG+GGG + chr8_1:89854656-89854675 Msa1224750:CDS 40.0%
AAAGATGTTGACGATGCTGA+TGG - chr8_1:89854702-89854721 None:intergenic 40.0%
CACATGGATCATTGTGATCA+AGG + chr8_1:89854835-89854854 Msa1224750:CDS 40.0%
CATGGATCATTGTGATCAAG+GGG + chr8_1:89854837-89854856 Msa1224750:CDS 40.0%
!! GGAACAAATGGTGATGGATA+TGG + chr8_1:89854893-89854912 Msa1224750:CDS 40.0%
!! AAGAGTACCTTTGATGATGG+TGG - chr8_1:89854964-89854983 None:intergenic 40.0%
!! CTGAAGAGTACCTTTGATGA+TGG - chr8_1:89854967-89854986 None:intergenic 40.0%
!!! AGCTCCTGTAAGTTTTGGAA+TGG - chr8_1:89855295-89855314 None:intergenic 40.0%
CATGTACTTGCAGCTATTGA+TGG - chr8_1:89855430-89855449 None:intergenic 40.0%
AATGGAGAGAAAGTCAACAG+TGG - chr8_1:89855460-89855479 None:intergenic 40.0%
TCAGAGTATGATGCTTAGAG+TGG + chr8_1:89855791-89855810 Msa1224750:three_prime_UTR 40.0%
CCCATCTAACTCAAAATGGA+AGG - chr8_1:89855819-89855838 None:intergenic 40.0%
AGAAGGAACCGATAATATGG+TGG + chr8_1:89855991-89856010 Msa1224750:three_prime_UTR 40.0%
TATTCCTTCTATGAGATGCC+TGG + chr8_1:89856059-89856078 Msa1224750:three_prime_UTR 40.0%
TCTGTCTTTCATTAGCAGCT+TGG - chr8_1:89856876-89856895 None:intergenic 40.0%
CACAAATGTTAGAGGGACAA+TGG + chr8_1:89856907-89856926 Msa1224750:three_prime_UTR 40.0%
TAGAGGGACAATGGGATATT+TGG + chr8_1:89856916-89856935 Msa1224750:three_prime_UTR 40.0%
!! GAGTTGCATCAAGTTGAAGA+TGG + chr8_1:89857037-89857056 Msa1224750:three_prime_UTR 40.0%
! CAAGTTGAAGATGGAACAGA+AGG + chr8_1:89857046-89857065 Msa1224750:three_prime_UTR 40.0%
GGTTCTATATTGGGCAAAAG+AGG + chr8_1:89857096-89857115 Msa1224750:three_prime_UTR 40.0%
TGTGCCCTAATCCAACTATT+AGG + chr8_1:89857209-89857228 Msa1224750:three_prime_UTR 40.0%
GATGGCCTAATAGTTGGATT+AGG - chr8_1:89857217-89857236 None:intergenic 40.0%
TATTAGGCCATCTGTTGCAA+AGG + chr8_1:89857225-89857244 Msa1224750:three_prime_UTR 40.0%
AGTGTTCCACCATTGTTTGA+TGG + chr8_1:89857280-89857299 Msa1224750:three_prime_UTR 40.0%
! CTAGATTAGGGCTCTGATCT+AGG + chr8_1:89851415-89851434 Msa1224750:intron 45.0%
TCTGGTCGATCGTATGTTGT+TGG + chr8_1:89851705-89851724 Msa1224750:five_prime_UTR 45.0%
!! CGATCGTATGTTGTTGGTTC+TGG + chr8_1:89851711-89851730 Msa1224750:five_prime_UTR 45.0%
! GATACTCACTTGATTCGACC+TGG + chr8_1:89851833-89851852 Msa1224750:five_prime_UTR 45.0%
!! GTCGTCTTTGGCTTTAACAC+TGG - chr8_1:89852528-89852547 None:intergenic 45.0%
! GTGCTTCATTTTACCTGGAC+AGG - chr8_1:89852649-89852668 None:intergenic 45.0%
GTCCAGGTAAAATGAAGCAC+TGG + chr8_1:89852649-89852668 Msa1224750:intron 45.0%
! TCCCAGTGCTTCATTTTACC+TGG - chr8_1:89852654-89852673 None:intergenic 45.0%
ACCAAACACAGCGAGATAGA+GGG - chr8_1:89853008-89853027 None:intergenic 45.0%
AACCAAACACAGCGAGATAG+AGG - chr8_1:89853009-89853028 None:intergenic 45.0%
! TAGAATTTGAGGCAGTGGAG+GGG + chr8_1:89853365-89853384 Msa1224750:intron 45.0%
ACTCTAAATGTGAGCGTGGT+TGG + chr8_1:89853500-89853519 Msa1224750:intron 45.0%
ACGAAGGTTGTTGGAATCTG+TGG + chr8_1:89853785-89853804 Msa1224750:intron 45.0%
CGAAGGTTGTTGGAATCTGT+GGG + chr8_1:89853786-89853805 Msa1224750:intron 45.0%
TGTTGAATGCAGTGAGCTTG+GGG + chr8_1:89853976-89853995 Msa1224750:intron 45.0%
TTGGGGATCTTGATGCCTTT+GGG + chr8_1:89853993-89854012 Msa1224750:CDS 45.0%
AACCTTTACCATTGGGGTGT+CGG + chr8_1:89854662-89854681 Msa1224750:CDS 45.0%
! CTTTAAAGGGTTTGAGGCCT+TGG + chr8_1:89854718-89854737 Msa1224750:CDS 45.0%
! AACTGGAAGCATGCATACAC+CGG + chr8_1:89854767-89854786 Msa1224750:CDS 45.0%
ACCGGCATTATTGCAGCATT+GGG + chr8_1:89854785-89854804 Msa1224750:CDS 45.0%
ACCCAATGCTGCAATAATGC+CGG - chr8_1:89854789-89854808 None:intergenic 45.0%
ACTATGGCCACCATCATCAA+AGG + chr8_1:89854954-89854973 Msa1224750:CDS 45.0%
TAACACTTCAAACATGCCCG+TGG + chr8_1:89855037-89855056 Msa1224750:three_prime_UTR 45.0%
ACTTTCCACTCACCCGTTAA+TGG - chr8_1:89855478-89855497 None:intergenic 45.0%
GTGCTTCTGATGAGGAAGAA+AGG + chr8_1:89855904-89855923 Msa1224750:three_prime_UTR 45.0%
AATGCCAGGCATCTCATAGA+AGG - chr8_1:89856066-89856085 None:intergenic 45.0%
AGATCCTCGTTAATGGCAAC+AGG - chr8_1:89856110-89856129 None:intergenic 45.0%
! GATAAAGAGGTGTGACAGCA+AGG - chr8_1:89856368-89856387 None:intergenic 45.0%
TCACTGTCGAGAAAGATGCT+CGG - chr8_1:89856535-89856554 None:intergenic 45.0%
TGGGATATTTGGCACCTGAA+TGG + chr8_1:89856927-89856946 Msa1224750:three_prime_UTR 45.0%
!! GGTGCATTTTTGAGCCATTC+AGG - chr8_1:89856944-89856963 None:intergenic 45.0%
TGCACCTATCACTGCAAAAG+TGG + chr8_1:89856958-89856977 Msa1224750:three_prime_UTR 45.0%
GTTGAAGATGGAACAGAAGG+TGG + chr8_1:89857049-89857068 Msa1224750:three_prime_UTR 45.0%
GAATGACTATGGTTGGACTG+TGG + chr8_1:89857182-89857201 Msa1224750:three_prime_UTR 45.0%
GCAACAGATGGCCTAATAGT+TGG - chr8_1:89857223-89857242 None:intergenic 45.0%
TGCAACACCTTTGCAACAGA+TGG - chr8_1:89857235-89857254 None:intergenic 45.0%
!! TGCAAAGGTGTTGCAGATGT+CGG + chr8_1:89857240-89857259 Msa1224750:three_prime_UTR 45.0%
TCCCTCTATCTCGCTGTGTT+TGG + chr8_1:89853004-89853023 Msa1224750:intron 50.0%
GACAGGTTTCTTTCCGCTTC+AGG + chr8_1:89853240-89853259 Msa1224750:intron 50.0%
GAGTGATGTTCACCACCTCA+AGG + chr8_1:89853808-89853827 Msa1224750:intron 50.0%
CTTGGGGATCTTGATGCCTT+TGG + chr8_1:89853992-89854011 Msa1224750:CDS 50.0%
CTTGCAATCACAGCTCCCAA+AGG - chr8_1:89854011-89854030 None:intergenic 50.0%
! CTTTGGGAGCTGTGATTGCA+AGG + chr8_1:89854009-89854028 Msa1224750:CDS 50.0%
TCAAAACAGCAGACCCTGCT+TGG + chr8_1:89854045-89854064 Msa1224750:CDS 50.0%
AAGCTGGGAAGTGACTTAGC+TGG + chr8_1:89854137-89854156 Msa1224750:CDS 50.0%
GTCATACCTGAAGGGTTCCA+AGG - chr8_1:89854208-89854227 None:intergenic 50.0%
ATCCGACACCCCAATGGTAA+AGG - chr8_1:89854667-89854686 None:intergenic 50.0%
! TAAAGGGTTTGAGGCCTTGG+AGG + chr8_1:89854721-89854740 Msa1224750:CDS 50.0%
CACCGGCATTATTGCAGCAT+TGG + chr8_1:89854784-89854803 Msa1224750:CDS 50.0%
! GGCATTATTGCAGCATTGGG+TGG + chr8_1:89854788-89854807 Msa1224750:CDS 50.0%
! GGGTGGCATTGCTGTACTTT+TGG + chr8_1:89854805-89854824 Msa1224750:CDS 50.0%
CTTCAGACTCTCCTATCAGC+TGG + chr8_1:89854981-89855000 Msa1224750:CDS 50.0%
TCTCAACCTCACCAGCTGAT+AGG - chr8_1:89854995-89855014 None:intergenic 50.0%
! TCTCTCCATTAACGGGTGAG+TGG + chr8_1:89855470-89855489 Msa1224750:intron 50.0%
! GGCATTTGGCTCATAATGCC+AGG - chr8_1:89856080-89856099 None:intergenic 50.0%
TTAATGGCAACAGGCAGTGG+CGG - chr8_1:89856101-89856120 None:intergenic 50.0%
TCGTTAATGGCAACAGGCAG+TGG - chr8_1:89856104-89856123 None:intergenic 50.0%
ACTGCCTGTTGCCATTAACG+AGG + chr8_1:89856103-89856122 Msa1224750:three_prime_UTR 50.0%
!! AAGGTGTTGCAGATGTCGGA+AGG + chr8_1:89857244-89857263 Msa1224750:three_prime_UTR 50.0%
! ATGGGGTACCAGTGTCAAGC+TGG + chr8_1:89854121-89854140 Msa1224750:CDS 55.0%
! TGGGGTACCAGTGTCAAGCT+GGG + chr8_1:89854122-89854141 Msa1224750:CDS 55.0%
GTCACTTCCCAGCTTGACAC+TGG - chr8_1:89854132-89854151 None:intergenic 55.0%
GGGATCATCCTCTTCTGCCT+TGG + chr8_1:89854188-89854207 Msa1224750:CDS 55.0%
GAAGGGTTCCAAGGCAGAAG+AGG - chr8_1:89854199-89854218 None:intergenic 55.0%
CTTCTGCCTTGGAACCCTTC+AGG + chr8_1:89854199-89854218 Msa1224750:CDS 55.0%
TTGCGTATCCGACACCCCAA+TGG - chr8_1:89854673-89854692 None:intergenic 55.0%
CAGCGGATCGCTACGATAAC+TGG + chr8_1:89854750-89854769 Msa1224750:CDS 55.0%
GACTCTCCTATCAGCTGGTG+AGG + chr8_1:89854986-89855005 Msa1224750:CDS 55.0%
TGAAGCTTCACGAGCAGCCA+CGG - chr8_1:89855057-89855076 None:intergenic 55.0%
! CGAGAAAGATGCTCGGTGAG+TGG - chr8_1:89856528-89856547 None:intergenic 55.0%
! GGGTGTTACAGTGTGGGCTC+TGG + chr8_1:89851687-89851706 Msa1224750:five_prime_UTR 60.0%
ATCCGCTGCAGACACCTCCA+AGG - chr8_1:89854738-89854757 None:intergenic 60.0%
GAAGCTTCACGAGCAGCCAC+GGG - chr8_1:89855056-89855075 None:intergenic 60.0%
CAACAGGCAGTGGCGGCATT+TGG - chr8_1:89856094-89856113 None:intergenic 60.0%
! GATGCTCGGTGAGTGGTGAC+AGG - chr8_1:89856521-89856540 None:intergenic 60.0%
GGATCAGGCTCGACTGTCCC+TGG + chr8_1:89852022-89852041 Msa1224750:CDS 65.0%
CAGGCTCGACTGTCCCTGGT+AGG + chr8_1:89852026-89852045 Msa1224750:intron 65.0%
!! GGCCTTGGAGGTGTCTGCAG+CGG + chr8_1:89854733-89854752 Msa1224750:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 89851394 89857498 89851394 ID=Msa1224750;Name=Msa1224750
chr8_1 mRNA 89851394 89857498 89851394 ID=Msa1224750-mRNA-1;Parent=Msa1224750;Name=Msa1224750-mRNA-1;_AED=0.09;_eAED=0.12;_QI=560|0.6|0.63|1|0.1|0.09|11|1342|264
chr8_1 exon 89851394 89851421 89851394 ID=Msa1224750-mRNA-1:exon:32603;Parent=Msa1224750-mRNA-1
chr8_1 exon 89851442 89852043 89851442 ID=Msa1224750-mRNA-1:exon:32604;Parent=Msa1224750-mRNA-1
chr8_1 exon 89853124 89853187 89853124 ID=Msa1224750-mRNA-1:exon:32605;Parent=Msa1224750-mRNA-1
chr8_1 exon 89853380 89853462 89853380 ID=Msa1224750-mRNA-1:exon:32606;Parent=Msa1224750-mRNA-1
chr8_1 exon 89853988 89854158 89853988 ID=Msa1224750-mRNA-1:exon:32607;Parent=Msa1224750-mRNA-1
chr8_1 exon 89854181 89854220 89854181 ID=Msa1224750-mRNA-1:exon:32608;Parent=Msa1224750-mRNA-1
chr8_1 exon 89854640 89855086 89854640 ID=Msa1224750-mRNA-1:exon:32609;Parent=Msa1224750-mRNA-1
chr8_1 exon 89855420 89855484 89855420 ID=Msa1224750-mRNA-1:exon:32610;Parent=Msa1224750-mRNA-1
chr8_1 exon 89855565 89855633 89855565 ID=Msa1224750-mRNA-1:exon:32611;Parent=Msa1224750-mRNA-1
chr8_1 exon 89855777 89856160 89855777 ID=Msa1224750-mRNA-1:exon:32612;Parent=Msa1224750-mRNA-1
chr8_1 exon 89856755 89857498 89856755 ID=Msa1224750-mRNA-1:exon:32613;Parent=Msa1224750-mRNA-1
chr8_1 five_prime_UTR 89851394 89851421 89851394 ID=Msa1224750-mRNA-1:five_prime_utr;Parent=Msa1224750-mRNA-1
chr8_1 five_prime_UTR 89851442 89851973 89851442 ID=Msa1224750-mRNA-1:five_prime_utr;Parent=Msa1224750-mRNA-1
chr8_1 CDS 89851974 89852043 89851974 ID=Msa1224750-mRNA-1:cds;Parent=Msa1224750-mRNA-1
chr8_1 CDS 89853124 89853187 89853124 ID=Msa1224750-mRNA-1:cds;Parent=Msa1224750-mRNA-1
chr8_1 CDS 89853380 89853462 89853380 ID=Msa1224750-mRNA-1:cds;Parent=Msa1224750-mRNA-1
chr8_1 CDS 89853988 89854158 89853988 ID=Msa1224750-mRNA-1:cds;Parent=Msa1224750-mRNA-1
chr8_1 CDS 89854181 89854220 89854181 ID=Msa1224750-mRNA-1:cds;Parent=Msa1224750-mRNA-1
chr8_1 CDS 89854640 89855006 89854640 ID=Msa1224750-mRNA-1:cds;Parent=Msa1224750-mRNA-1
chr8_1 three_prime_UTR 89855007 89855086 89855007 ID=Msa1224750-mRNA-1:three_prime_utr;Parent=Msa1224750-mRNA-1
chr8_1 three_prime_UTR 89855420 89855484 89855420 ID=Msa1224750-mRNA-1:three_prime_utr;Parent=Msa1224750-mRNA-1
chr8_1 three_prime_UTR 89855565 89855633 89855565 ID=Msa1224750-mRNA-1:three_prime_utr;Parent=Msa1224750-mRNA-1
chr8_1 three_prime_UTR 89855777 89856160 89855777 ID=Msa1224750-mRNA-1:three_prime_utr;Parent=Msa1224750-mRNA-1
chr8_1 three_prime_UTR 89856755 89857498 89856755 ID=Msa1224750-mRNA-1:three_prime_utr;Parent=Msa1224750-mRNA-1
Gene Sequence

>Msa1224750

ATGAAGCCATTAGAATGTGTGATATTTTCTGACTATGGAACTGATCTTGGATCAGGCTCGACTGTCCCTGGAATCCATCTTTGTAGTTTTTGGCACCATACTTTATCATCAGTGAAGGTTCAAGGTGCATTAAATGGAGGGGAACCTCAAATCTTGTGCAAAATGAGAAGGAGAAATTTGAGAAGCAGATTTTGTTTGAAAAAGTTTACACAGTCAATGAGCTTGGGGATCTTGATGCCTTTGGGAGCTGTGATTGCAAGGTACTTGAAGGTGTTCAAAACAGCAGACCCTGCTTGGTTTTACCTTCATGTTACATGCCAATCAGCTGCCTATATAGTTGGTGTTGTTGGATGGGGTACCAGTGTCAAGCTGGGAAGTGACTTAGCTGAACACTCGGGATCATCCTCTTCTGCCTTGGAACCCTTCAGGTTTTTGCTCTGTTATTACTGGAACCTTTACCATTGGGGTGTCGGATACGCAACTATAACCATCAGCATCGTCAACATCTTTAAAGGGTTTGAGGCCTTGGAGGTGTCTGCAGCGGATCGCTACGATAACTGGAAGCATGCATACACCGGCATTATTGCAGCATTGGGTGGCATTGCTGTACTTTTGGAAGCTTACACATGGATCATTGTGATCAAGGGGAAGAAATCAGAGAACAAGTTGCAAGGAATGAATGGAACAAATGGTGATGGATATGGTTTCTATAATCCGATCAAACCTTCTTTAACTAGCTATCACTATGGCCACCATCATCAAAGGTACTCTTCAGACTCTCCTATCAGCTGGTGA
Protein sequence

>Msa1224750

MKPLECVIFSDYGTDLGSGSTVPGIHLCSFWHHTLSSVKVQGALNGGEPQILCKMRRRNLRSRFCLKKFTQSMSLGILMPLGAVIARYLKVFKTADPAWFYLHVTCQSAAYIVGVVGWGTSVKLGSDLAEHSGSSSSALEPFRFLLCYYWNLYHWGVGYATITISIVNIFKGFEALEVSAADRYDNWKHAYTGIIAALGGIAVLLEAYTWIIVIKGKKSENKLQGMNGTNGDGYGFYNPIKPSLTSYHYGHHHQRYSSDSPISW*