Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0795420 | Msa0795430 | 0.875445 | 3.064590e-68 | -8.615850e-47 |
| Msa0795430 | Msa0930670 | 0.852655 | 4.003081e-61 | -8.615850e-47 |
| Msa0795430 | Msa1224750 | 0.864658 | 1.037961e-64 | -8.615850e-47 |
| Msa0171760 | Msa0795430 | 0.808582 | 2.885966e-50 | -8.615850e-47 |
| Msa0575020 | Msa0795430 | 0.852470 | 4.521009e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 60 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTGGTTAATGGGGTTTA+TGG | 0.132478 | 5_3:-7379470 | Msa0795430:CDS |
| GACAGGTTTCTTTCCGCTTC+AGG | 0.265290 | 5_3:-7376975 | Msa0795430:intron |
| GAAGAAGGCGGTGTGGGCTC+TGG | 0.265858 | 5_3:-7378528 | Msa0795430:three_prime_UTR |
| CTATTGGAGGTATGTCTCTT+TGG | 0.270878 | 5_3:+7376658 | None:intergenic |
| TGAGATTGAAGAGGGTTGTT+AGG | 0.287678 | 5_3:-7378977 | Msa0795430:three_prime_UTR |
| CGATCGTATGTTGTTGGTTC+TGG | 0.293847 | 5_3:-7378504 | Msa0795430:three_prime_UTR |
| TCTGACTATGGAACTGATCT+TGG | 0.318574 | 5_3:-7378214 | Msa0795430:three_prime_UTR |
| GCTTGGTTAATGGGGTTTAT+GGG | 0.325084 | 5_3:-7379469 | Msa0795430:CDS |
| GATTAAGTTTGAGAAGTTAA+AGG | 0.325828 | 5_3:-7376693 | Msa0795430:three_prime_UTR |
| GAAGTTGGAAGCTTGGTTAA+TGG | 0.329222 | 5_3:-7379479 | Msa0795430:CDS |
| AAGTTGGAAGCTTGGTTAAT+GGG | 0.360635 | 5_3:-7379478 | Msa0795430:CDS |
| ACCAATGGCAAAAGCTTCAT+AGG | 0.368303 | 5_3:+7378575 | None:intergenic |
| GTTAATGGGGTTTATGGGTT+CGG | 0.409120 | 5_3:-7379464 | Msa0795430:intron |
| TGGTAAACTGCCAGTCTCTC+TGG | 0.427566 | 5_3:-7378624 | Msa0795430:intron |
| TCTGGGCGATCGTATGTTGT+TGG | 0.435307 | 5_3:-7378510 | Msa0795430:three_prime_UTR |
| TAGTGGAAACATTGTCCTAT+TGG | 0.440791 | 5_3:+7376642 | None:intergenic |
| ATTCATGGAAGTTGGAAGCT+TGG | 0.448537 | 5_3:-7379486 | None:intergenic |
| CCTTCACTGATGATAAAGTA+TGG | 0.449579 | 5_3:+7377066 | None:intergenic |
| GAAAATATCACACATTCTAA+TGG | 0.451109 | 5_3:+7378235 | None:intergenic |
| GAGATTGAAGAGGGTTGTTA+GGG | 0.451816 | 5_3:-7378976 | Msa0795430:intron |
| ACTCTAAATGTGAGCGTGGT+TGG | 0.451904 | 5_3:-7376715 | Msa0795430:three_prime_UTR |
| TGGAGAAATTTGTTTCCCTA+TGG | 0.453127 | 5_3:-7378484 | Msa0795430:intron |
| CAAAGAGACATACCTCCAAT+AGG | 0.456520 | 5_3:-7376657 | Msa0795430:three_prime_UTR |
| AAGAAGGCGGTGTGGGCTCT+GGG | 0.459019 | 5_3:-7378527 | Msa0795430:three_prime_UTR |
| TAATTCAGAACTGAATAAAT+CGG | 0.461335 | 5_3:-7376751 | Msa0795430:three_prime_UTR |
| GTCCAGGTAAAATGAAGCAC+TGG | 0.472640 | 5_3:-7377566 | Msa0795430:intron |
| ACAATATTAGTTGCTTTGAC+AGG | 0.475132 | 5_3:-7376992 | Msa0795430:three_prime_UTR |
| TTATCATCAGTGAAGGTTCA+AGG | 0.488974 | 5_3:-7377059 | Msa0795430:three_prime_UTR |
| TATGGAACTGATCTTGGATC+AGG | 0.496920 | 5_3:-7378208 | Msa0795430:three_prime_UTR |
| GGCTATGAAGAAGGCGGTGT+GGG | 0.499428 | 5_3:-7378534 | Msa0795430:three_prime_UTR |
| TTATAGTGGTAGTAGTATAG+TGG | 0.503470 | 5_3:+7376625 | None:intergenic |
| GGATCAGGCTCGACTGTCCC+TGG | 0.507315 | 5_3:-7378193 | Msa0795430:intron |
| AGTTGGAAGCTTGGTTAATG+GGG | 0.518593 | 5_3:-7379477 | Msa0795430:CDS |
| ATGGCTTGATTCATGGAAGT+TGG | 0.521152 | 5_3:-7379494 | None:intergenic |
| CACACTGTTCGTTCCACCAA+TGG | 0.529102 | 5_3:+7378560 | None:intergenic |
| TTAGAATTTGAGGCAGTGGA+GGG | 0.535724 | 5_3:-7376851 | Msa0795430:three_prime_UTR |
| TGATTGTGTAGGTATGAAGA+GGG | 0.546154 | 5_3:-7379193 | Msa0795430:intron |
| AGTTCAATGTGCAATTATAG+TGG | 0.554914 | 5_3:+7376611 | None:intergenic |
| TAGTAAAATGAGATTGAAGA+GGG | 0.556603 | 5_3:-7378985 | Msa0795430:exon |
| TTGATTGTGTAGGTATGAAG+AGG | 0.565183 | 5_3:-7379194 | Msa0795430:intron |
| TAAAATGAAGCACTGGGAGA+TGG | 0.566529 | 5_3:-7377559 | Msa0795430:three_prime_UTR |
| TTTAGAATTTGAGGCAGTGG+AGG | 0.567604 | 5_3:-7376852 | Msa0795430:three_prime_UTR |
| GTAGTAAAATGAGATTGAAG+AGG | 0.570122 | 5_3:-7378986 | Msa0795430:exon |
| TGGAAACATTGTCCTATTGG+AGG | 0.574101 | 5_3:+7376645 | None:intergenic |
| AAATCTTGTGCAAAATGAGA+AGG | 0.576750 | 5_3:-7376821 | Msa0795430:three_prime_UTR |
| TATGTCTCTTTGGTTGAATG+TGG | 0.585010 | 5_3:+7376668 | None:intergenic |
| CAGTCTCTCTGGTGGTCATG+TGG | 0.586921 | 5_3:-7378613 | Msa0795430:three_prime_UTR |
| CTCTCTGGTGGTCATGTGGT+AGG | 0.589324 | 5_3:-7378609 | Msa0795430:three_prime_UTR |
| AGTGTGAGAGGCTATGAAGA+AGG | 0.592683 | 5_3:-7378543 | Msa0795430:three_prime_UTR |
| CCATACTTTATCATCAGTGA+AGG | 0.601838 | 5_3:-7377066 | Msa0795430:three_prime_UTR |
| CCAATGGCAAAAGCTTCATA+GGG | 0.603793 | 5_3:+7378576 | None:intergenic |
| GGTGGAACGAACAGTGTGAG+AGG | 0.622539 | 5_3:-7378555 | Msa0795430:three_prime_UTR |
| TCCAGGTAAAATGAAGCACT+GGG | 0.622821 | 5_3:-7377565 | Msa0795430:intron |
| GAGGGTTAGAGAAACTGTTG+AGG | 0.623078 | 5_3:-7379175 | Msa0795430:CDS |
| TCAAACTCTAAATGTGAGCG+TGG | 0.632312 | 5_3:-7376719 | Msa0795430:three_prime_UTR |
| GATTTCTTAGTAGAGACTAG+AGG | 0.640582 | 5_3:-7378329 | Msa0795430:intron |
| TAGAATTTGAGGCAGTGGAG+GGG | 0.643151 | 5_3:-7376850 | Msa0795430:three_prime_UTR |
| AGGCTATGAAGAAGGCGGTG+TGG | 0.643174 | 5_3:-7378535 | Msa0795430:three_prime_UTR |
| TAAACTGCCAGTCTCTCTGG+TGG | 0.648318 | 5_3:-7378621 | Msa0795430:intron |
| GTGAGAGGCTATGAAGAAGG+CGG | 0.695715 | 5_3:-7378540 | Msa0795430:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAGTATATAAAGTATTA+GGG | - | chr5_3:7378104-7378123 | Msa0795430:intron | 10.0% |
| !!! | TTTGATTTTATTTGTTTTTC+AGG | - | chr5_3:7377039-7377058 | Msa0795430:three_prime_UTR | 15.0% |
| !! | ATATCAGTATTATACATATT+TGG | - | chr5_3:7377226-7377245 | Msa0795430:intron | 15.0% |
| !!! | ATTGATTTAAATAGCAATAA+TGG | + | chr5_3:7377376-7377395 | None:intergenic | 15.0% |
| !!! | AATAAAATTAAAGTACCATA+GGG | + | chr5_3:7377635-7377654 | None:intergenic | 15.0% |
| !!! | TAATAAAATTAAAGTACCAT+AGG | + | chr5_3:7377636-7377655 | None:intergenic | 15.0% |
| !!! | CTAAAAGTATATAAAGTATT+AGG | - | chr5_3:7378103-7378122 | Msa0795430:intron | 15.0% |
| !!! | TTTTTTGAAGTAATTTAGAA+TGG | + | chr5_3:7378289-7378308 | None:intergenic | 15.0% |
| !! | AAGAATTAAGATTTAACTAA+AGG | + | chr5_3:7378506-7378525 | None:intergenic | 15.0% |
| !!! | ATTTTTCTGATATTCTGAAT+TGG | - | chr5_3:7377083-7377102 | Msa0795430:three_prime_UTR | 20.0% |
| !!! | TTTTTCTGATATTCTGAATT+GGG | - | chr5_3:7377084-7377103 | Msa0795430:three_prime_UTR | 20.0% |
| !!! | TATGTTTTTCTGACTTTAAT+TGG | - | chr5_3:7377457-7377476 | Msa0795430:intron | 20.0% |
| !!! | AAGAGTTAATTTTGTGAAAT+TGG | - | chr5_3:7378025-7378044 | Msa0795430:intron | 20.0% |
| !!! | AGAGTTAATTTTGTGAAATT+GGG | - | chr5_3:7378026-7378045 | Msa0795430:intron | 20.0% |
| !! | GTTATTATTGAATTGATACT+TGG | - | chr5_3:7378361-7378380 | Msa0795430:intron | 20.0% |
| !!! | TTGTGTATATATTTTTTGTC+AGG | - | chr5_3:7379217-7379236 | Msa0795430:intron | 20.0% |
| !!! | TGTTTCTTTTTTAGAATTTG+AGG | - | chr5_3:7379240-7379259 | Msa0795430:intron | 20.0% |
| !! | TAATTCAGAACTGAATAAAT+CGG | - | chr5_3:7379350-7379369 | Msa0795430:intron | 20.0% |
| ! | TTCAATGTAAAGCAAAACAA+TGG | + | chr5_3:7377012-7377031 | None:intergenic | 25.0% |
| ! | TAGTAAAATGAGATTGAAGA+GGG | - | chr5_3:7377116-7377135 | Msa0795430:intron | 25.0% |
| ! | TCTATGAATTTCCATATTTG+AGG | - | chr5_3:7377275-7377294 | Msa0795430:intron | 25.0% |
| ! | CTAAACATTTACCTCAAATA+TGG | + | chr5_3:7377289-7377308 | None:intergenic | 25.0% |
| ! | AAGTGAGTATCTTGAAAATT+AGG | + | chr5_3:7377710-7377729 | None:intergenic | 25.0% |
| ! | GAAAATATCACACATTCTAA+TGG | + | chr5_3:7377869-7377888 | None:intergenic | 25.0% |
| ! | AATAGTACTTATGTGCATAT+GGG | + | chr5_3:7377994-7378013 | None:intergenic | 25.0% |
| ! | TAATAGTACTTATGTGCATA+TGG | + | chr5_3:7377995-7378014 | None:intergenic | 25.0% |
| !! | TTAATTTTGTGAAATTGGGT+GGG | - | chr5_3:7378030-7378049 | Msa0795430:intron | 25.0% |
| ! | ACACAAAAGTAAGTAAGATT+GGG | + | chr5_3:7378482-7378501 | None:intergenic | 25.0% |
| !!! | AGAAGCATTTGTAAAATTGA+AGG | + | chr5_3:7378753-7378772 | None:intergenic | 25.0% |
| !! | GTTGTAGAAAAGTATAATGA+TGG | + | chr5_3:7378848-7378867 | None:intergenic | 25.0% |
| ! | TCATTTGAATTATCCATAAC+AGG | - | chr5_3:7378916-7378935 | Msa0795430:intron | 25.0% |
| ! | ACCTACTCTTATATATTTGT+TGG | - | chr5_3:7378980-7378999 | Msa0795430:exon | 25.0% |
| ! | CCTACTCTTATATATTTGTT+GGG | - | chr5_3:7378981-7379000 | Msa0795430:exon | 25.0% |
| ! | GATTAAGTTTGAGAAGTTAA+AGG | - | chr5_3:7379408-7379427 | Msa0795430:intron | 25.0% |
| TTCATCTTCTATTCTCTCTA+AGG | + | chr5_3:7376671-7376690 | None:intergenic | 30.0% | |
| AACAACTTGAGTAGAAAAAG+GGG | + | chr5_3:7376699-7376718 | None:intergenic | 30.0% | |
| CAACAACTTGAGTAGAAAAA+GGG | + | chr5_3:7376700-7376719 | None:intergenic | 30.0% | |
| ACAACAACTTGAGTAGAAAA+AGG | + | chr5_3:7376701-7376720 | None:intergenic | 30.0% | |
| ! | TTTCTCAGCATAATTTTCGT+TGG | - | chr5_3:7376721-7376740 | Msa0795430:three_prime_UTR | 30.0% |
| !!! | TTTTTTCCCTTTTCACTTTC+TGG | - | chr5_3:7376762-7376781 | Msa0795430:three_prime_UTR | 30.0% |
| ! | TTTTTCCCTTTTCACTTTCT+GGG | - | chr5_3:7376763-7376782 | Msa0795430:three_prime_UTR | 30.0% |
| !!! | TTCTGTGATTTTGATTGTGT+AGG | - | chr5_3:7376897-7376916 | Msa0795430:intron | 30.0% |
| GTAGTAAAATGAGATTGAAG+AGG | - | chr5_3:7377115-7377134 | Msa0795430:intron | 30.0% | |
| TTCAACAAACAGGACAATAA+GGG | + | chr5_3:7377333-7377352 | None:intergenic | 30.0% | |
| ATTCAACAAACAGGACAATA+AGG | + | chr5_3:7377334-7377353 | None:intergenic | 30.0% | |
| TAAGCAAGAATTCAACAAAC+AGG | + | chr5_3:7377343-7377362 | None:intergenic | 30.0% | |
| ! | GTTTGTTGAATTCTTGCTTA+TGG | - | chr5_3:7377343-7377362 | Msa0795430:intron | 30.0% |
| AACAAATTTCATATTCAGCC+AGG | + | chr5_3:7377740-7377759 | None:intergenic | 30.0% | |
| ! | TGTGTGATATTTTCTGACTA+TGG | - | chr5_3:7377875-7377894 | Msa0795430:intron | 30.0% |
| AATGAAATAAAGACCTACCA+GGG | + | chr5_3:7377928-7377947 | None:intergenic | 30.0% | |
| AAATGAAATAAAGACCTACC+AGG | + | chr5_3:7377929-7377948 | None:intergenic | 30.0% | |
| ! | GTTAATTTTGTGAAATTGGG+TGG | - | chr5_3:7378029-7378048 | Msa0795430:intron | 30.0% |
| CTCTGTTCATACAAATTTGA+AGG | + | chr5_3:7378136-7378155 | None:intergenic | 30.0% | |
| GCTTATATTCATGTGATTTC+TGG | - | chr5_3:7378194-7378213 | Msa0795430:three_prime_UTR | 30.0% | |
| ! | TATATTCATGTGATTTCTGG+AGG | - | chr5_3:7378197-7378216 | Msa0795430:three_prime_UTR | 30.0% |
| GAATTGATACTTGGTTGTAA+TGG | - | chr5_3:7378370-7378389 | Msa0795430:intron | 30.0% | |
| !! | TTGGTTGTAATGGATTAGTA+TGG | - | chr5_3:7378380-7378399 | Msa0795430:intron | 30.0% |
| !! | TGGTTGTAATGGATTAGTAT+GGG | - | chr5_3:7378381-7378400 | Msa0795430:intron | 30.0% |
| CACACAAAAGTAAGTAAGAT+TGG | + | chr5_3:7378483-7378502 | None:intergenic | 30.0% | |
| TTTACAAATGCTTCTACTGT+TGG | - | chr5_3:7378758-7378777 | Msa0795430:intron | 30.0% | |
| ACTGTTAGAATGAGTAAACA+TGG | - | chr5_3:7378788-7378807 | Msa0795430:intron | 30.0% | |
| !!! | ATGGTTTTGAAAGATAGACA+TGG | - | chr5_3:7378807-7378826 | Msa0795430:intron | 30.0% |
| TAATATCTTTACGCCTGTTA+TGG | + | chr5_3:7378932-7378951 | None:intergenic | 30.0% | |
| CCCAACAAATATATAAGAGT+AGG | + | chr5_3:7378984-7379003 | None:intergenic | 30.0% | |
| ! | TTATATATTTGTTGGGTTGC+AGG | - | chr5_3:7378988-7379007 | Msa0795430:exon | 30.0% |
| ! | GAATCCATCTTTGTAGTTTT+TGG | - | chr5_3:7379010-7379029 | Msa0795430:CDS | 30.0% |
| ! | ACAATATTAGTTGCTTTGAC+AGG | - | chr5_3:7379109-7379128 | Msa0795430:intron | 30.0% |
| AAAAAGTGAAATACCTGAAG+CGG | + | chr5_3:7379142-7379161 | None:intergenic | 30.0% | |
| CAACATCAGAACAACAAAAA+AGG | + | chr5_3:7379172-7379191 | None:intergenic | 30.0% | |
| !!! | TTTTTTAGAATTTGAGGCAG+TGG | - | chr5_3:7379246-7379265 | Msa0795430:intron | 30.0% |
| AAATCTTGTGCAAAATGAGA+AGG | - | chr5_3:7379280-7379299 | Msa0795430:intron | 30.0% | |
| TTATAGTGGTAGTAGTATAG+TGG | + | chr5_3:7379479-7379498 | None:intergenic | 30.0% | |
| AAGTTGGAAGCTTGGTTAAT+GGG | - | chr5_3:7376623-7376642 | Msa0795430:three_prime_UTR | 35.0% | |
| TTGATTGTGTAGGTATGAAG+AGG | - | chr5_3:7376907-7376926 | Msa0795430:intron | 35.0% | |
| TGATTGTGTAGGTATGAAGA+GGG | - | chr5_3:7376908-7376927 | Msa0795430:intron | 35.0% | |
| ! | TGGAGAAATTTGTTTCCCTA+TGG | - | chr5_3:7377617-7377636 | Msa0795430:intron | 35.0% |
| AGAAGCTAAACTAATTGAGC+AGG | + | chr5_3:7377668-7377687 | None:intergenic | 35.0% | |
| GATTTCTTAGTAGAGACTAG+AGG | - | chr5_3:7377772-7377791 | Msa0795430:intron | 35.0% | |
| TAGCATTCATTAGCTGTTAC+AGG | - | chr5_3:7378156-7378175 | Msa0795430:intron | 35.0% | |
| TTCATTAGCTGTTACAGGTA+TGG | - | chr5_3:7378161-7378180 | Msa0795430:intron | 35.0% | |
| !! | TGTAATGGATTAGTATGGGT+TGG | - | chr5_3:7378385-7378404 | Msa0795430:intron | 35.0% |
| !! | GTAATGGATTAGTATGGGTT+GGG | - | chr5_3:7378386-7378405 | Msa0795430:intron | 35.0% |
| !! | TAATGGATTAGTATGGGTTG+GGG | - | chr5_3:7378387-7378406 | Msa0795430:intron | 35.0% |
| GGTTTCATCTAGCTAACATT+GGG | + | chr5_3:7378732-7378751 | None:intergenic | 35.0% | |
| AGGTTTCATCTAGCTAACAT+TGG | + | chr5_3:7378733-7378752 | None:intergenic | 35.0% | |
| CCTTCACTGATGATAAAGTA+TGG | + | chr5_3:7379038-7379057 | None:intergenic | 35.0% | |
| CCATACTTTATCATCAGTGA+AGG | - | chr5_3:7379035-7379054 | Msa0795430:CDS | 35.0% | |
| TTATCATCAGTGAAGGTTCA+AGG | - | chr5_3:7379042-7379061 | Msa0795430:CDS | 35.0% | |
| ! | CTCATTTTGCACAAGATTTG+AGG | + | chr5_3:7379279-7379298 | None:intergenic | 35.0% |
| TATGTCTCTTTGGTTGAATG+TGG | + | chr5_3:7379436-7379455 | None:intergenic | 35.0% | |
| TAGTGGAAACATTGTCCTAT+TGG | + | chr5_3:7379462-7379481 | None:intergenic | 35.0% | |
| GAAGTTGGAAGCTTGGTTAA+TGG | - | chr5_3:7376622-7376641 | Msa0795430:three_prime_UTR | 40.0% | |
| AGTTGGAAGCTTGGTTAATG+GGG | - | chr5_3:7376624-7376643 | Msa0795430:three_prime_UTR | 40.0% | |
| AGCTTGGTTAATGGGGTTTA+TGG | - | chr5_3:7376631-7376650 | Msa0795430:three_prime_UTR | 40.0% | |
| GCTTGGTTAATGGGGTTTAT+GGG | - | chr5_3:7376632-7376651 | Msa0795430:three_prime_UTR | 40.0% | |
| GTTAATGGGGTTTATGGGTT+CGG | - | chr5_3:7376637-7376656 | Msa0795430:three_prime_UTR | 40.0% | |
| GATGACCCAGAAAGTGAAAA+GGG | + | chr5_3:7376771-7376790 | None:intergenic | 40.0% | |
| AGATGACCCAGAAAGTGAAA+AGG | + | chr5_3:7376772-7376791 | None:intergenic | 40.0% | |
| TGAGATTGAAGAGGGTTGTT+AGG | - | chr5_3:7377124-7377143 | Msa0795430:intron | 40.0% | |
| GAGATTGAAGAGGGTTGTTA+GGG | - | chr5_3:7377125-7377144 | Msa0795430:intron | 40.0% | |
| CCAATGGCAAAAGCTTCATA+GGG | + | chr5_3:7377528-7377547 | None:intergenic | 40.0% | |
| ACCAATGGCAAAAGCTTCAT+AGG | + | chr5_3:7377529-7377548 | None:intergenic | 40.0% | |
| ! | TATGAAGCTTTTGCCATTGG+TGG | - | chr5_3:7377528-7377547 | Msa0795430:three_prime_UTR | 40.0% |
| TCTGACTATGGAACTGATCT+TGG | - | chr5_3:7377887-7377906 | Msa0795430:intron | 40.0% | |
| TATGGAACTGATCTTGGATC+AGG | - | chr5_3:7377893-7377912 | Msa0795430:intron | 40.0% | |
| ! | TTTTGTGAAATTGGGTGGGT+AGG | - | chr5_3:7378034-7378053 | Msa0795430:intron | 40.0% |
| GTGGGTAGGAATTAAGCTAA+AGG | - | chr5_3:7378048-7378067 | Msa0795430:intron | 40.0% | |
| !! | GTCGTCTTTGGCTTTAACAT+TGG | + | chr5_3:7378414-7378433 | None:intergenic | 40.0% |
| TGTTAAAGCCAAAGACGACA+TGG | - | chr5_3:7378415-7378434 | Msa0795430:intron | 40.0% | |
| ATCTACTACCATGTCGTCTT+TGG | + | chr5_3:7378426-7378445 | None:intergenic | 40.0% | |
| AATTCTTGCAATTCCTGTCC+AGG | - | chr5_3:7378519-7378538 | Msa0795430:three_prime_UTR | 40.0% | |
| ! | TCCAGGTAAAATGAAGCACT+GGG | - | chr5_3:7378536-7378555 | Msa0795430:three_prime_UTR | 40.0% |
| !! | TAAAATGAAGCACTGGGAGA+TGG | - | chr5_3:7378542-7378561 | Msa0795430:three_prime_UTR | 40.0% |
| ACCAAACACAGTGAGATAGA+GGG | + | chr5_3:7378894-7378913 | None:intergenic | 40.0% | |
| AACCAAACACAGTGAGATAG+AGG | + | chr5_3:7378895-7378914 | None:intergenic | 40.0% | |
| GGTGCCAAAAACTACAAAGA+TGG | + | chr5_3:7379017-7379036 | None:intergenic | 40.0% | |
| ! | TTTAGAATTTGAGGCAGTGG+AGG | - | chr5_3:7379249-7379268 | Msa0795430:intron | 40.0% |
| ! | TTAGAATTTGAGGCAGTGGA+GGG | - | chr5_3:7379250-7379269 | Msa0795430:intron | 40.0% |
| TCAAACTCTAAATGTGAGCG+TGG | - | chr5_3:7379382-7379401 | Msa0795430:intron | 40.0% | |
| ! | CTATTGGAGGTATGTCTCTT+TGG | + | chr5_3:7379446-7379465 | None:intergenic | 40.0% |
| CAAAGAGACATACCTCCAAT+AGG | - | chr5_3:7379444-7379463 | Msa0795430:intron | 40.0% | |
| TGGAAACATTGTCCTATTGG+AGG | + | chr5_3:7379459-7379478 | None:intergenic | 40.0% | |
| GAGGGTTAGAGAAACTGTTG+AGG | - | chr5_3:7376926-7376945 | Msa0795430:intron | 45.0% | |
| ! | CCCTATGAAGCTTTTGCCAT+TGG | - | chr5_3:7377525-7377544 | Msa0795430:three_prime_UTR | 45.0% |
| AGTGTGAGAGGCTATGAAGA+AGG | - | chr5_3:7377558-7377577 | Msa0795430:three_prime_UTR | 45.0% | |
| !! | CGATCGTATGTTGTTGGTTC+TGG | - | chr5_3:7377597-7377616 | Msa0795430:intron | 45.0% |
| ! | GATACTCACTTGATTCGACC+TGG | - | chr5_3:7377719-7377738 | Msa0795430:intron | 45.0% |
| ! | GTGCTTCATTTTACCTGGAC+AGG | + | chr5_3:7378535-7378554 | None:intergenic | 45.0% |
| GTCCAGGTAAAATGAAGCAC+TGG | - | chr5_3:7378535-7378554 | Msa0795430:three_prime_UTR | 45.0% | |
| ! | TCCCAGTGCTTCATTTTACC+TGG | + | chr5_3:7378540-7378559 | None:intergenic | 45.0% |
| TCCCTCTATCTCACTGTGTT+TGG | - | chr5_3:7378890-7378909 | Msa0795430:intron | 45.0% | |
| ! | TAGAATTTGAGGCAGTGGAG+GGG | - | chr5_3:7379251-7379270 | Msa0795430:intron | 45.0% |
| ACTCTAAATGTGAGCGTGGT+TGG | - | chr5_3:7379386-7379405 | Msa0795430:intron | 45.0% | |
| AATGGGGTTTATGGGTTCGG+TGG | - | chr5_3:7376640-7376659 | Msa0795430:three_prime_UTR | 50.0% | |
| TGGTAAACTGCCAGTCTCTC+TGG | - | chr5_3:7377477-7377496 | Msa0795430:intron | 50.0% | |
| TAAACTGCCAGTCTCTCTGG+TGG | - | chr5_3:7377480-7377499 | Msa0795430:intron | 50.0% | |
| CACACTGTTCGTTCCACCAA+TGG | + | chr5_3:7377544-7377563 | None:intergenic | 50.0% | |
| GTGAGAGGCTATGAAGAAGG+CGG | - | chr5_3:7377561-7377580 | Msa0795430:three_prime_UTR | 50.0% | |
| TCTGGGCGATCGTATGTTGT+TGG | - | chr5_3:7377591-7377610 | Msa0795430:intron | 50.0% | |
| GACAGGTTTCTTTCCGCTTC+AGG | - | chr5_3:7379126-7379145 | Msa0795430:intron | 50.0% | |
| CACATGACCACCAGAGAGAC+TGG | + | chr5_3:7377490-7377509 | None:intergenic | 55.0% | |
| CAGTCTCTCTGGTGGTCATG+TGG | - | chr5_3:7377488-7377507 | Msa0795430:intron | 55.0% | |
| CTCTCTGGTGGTCATGTGGT+AGG | - | chr5_3:7377492-7377511 | Msa0795430:intron | 55.0% | |
| GGTGGAACGAACAGTGTGAG+AGG | - | chr5_3:7377546-7377565 | Msa0795430:three_prime_UTR | 55.0% | |
| AGGCTATGAAGAAGGCGGTG+TGG | - | chr5_3:7377566-7377585 | Msa0795430:intron | 55.0% | |
| GGCTATGAAGAAGGCGGTGT+GGG | - | chr5_3:7377567-7377586 | Msa0795430:intron | 55.0% | |
| AAGAAGGCGGTGTGGGCTCT+GGG | - | chr5_3:7377574-7377593 | Msa0795430:intron | 60.0% | |
| GAAGAAGGCGGTGTGGGCTC+TGG | - | chr5_3:7377573-7377592 | Msa0795430:intron | 65.0% | |
| GGATCAGGCTCGACTGTCCC+TGG | - | chr5_3:7377908-7377927 | Msa0795430:intron | 65.0% | |
| CAGGCTCGACTGTCCCTGGT+AGG | - | chr5_3:7377912-7377931 | Msa0795430:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 7376619 | 7379504 | 7376619 | ID=Msa0795430;Name=Msa0795430 |
| chr5_3 | mRNA | 7376619 | 7379504 | 7376619 | ID=Msa0795430-mRNA-1;Parent=Msa0795430;Name=Msa0795430-mRNA-1;_AED=0.25;_eAED=0.28;_QI=0|0.85|0.87|1|0.28|0.37|8|789|48 |
| chr5_3 | exon | 7376619 | 7376884 | 7376619 | ID=Msa0795430-mRNA-1:exon:3035;Parent=Msa0795430-mRNA-1 |
| chr5_3 | exon | 7376976 | 7377113 | 7376976 | ID=Msa0795430-mRNA-1:exon:3034;Parent=Msa0795430-mRNA-1 |
| chr5_3 | exon | 7377514 | 7377582 | 7377514 | ID=Msa0795430-mRNA-1:exon:3033;Parent=Msa0795430-mRNA-1 |
| chr5_3 | exon | 7378194 | 7378341 | 7378194 | ID=Msa0795430-mRNA-1:exon:3032;Parent=Msa0795430-mRNA-1 |
| chr5_3 | exon | 7378485 | 7378632 | 7378485 | ID=Msa0795430-mRNA-1:exon:3031;Parent=Msa0795430-mRNA-1 |
| chr5_3 | exon | 7378977 | 7379062 | 7378977 | ID=Msa0795430-mRNA-1:exon:3030;Parent=Msa0795430-mRNA-1 |
| chr5_3 | exon | 7379164 | 7379204 | 7379164 | ID=Msa0795430-mRNA-1:exon:3029;Parent=Msa0795430-mRNA-1 |
| chr5_3 | exon | 7379465 | 7379504 | 7379465 | ID=Msa0795430-mRNA-1:exon:3028;Parent=Msa0795430-mRNA-1 |
| chr5_3 | CDS | 7379465 | 7379504 | 7379465 | ID=Msa0795430-mRNA-1:cds;Parent=Msa0795430-mRNA-1 |
| chr5_3 | CDS | 7379164 | 7379204 | 7379164 | ID=Msa0795430-mRNA-1:cds;Parent=Msa0795430-mRNA-1 |
| chr5_3 | CDS | 7378997 | 7379062 | 7378997 | ID=Msa0795430-mRNA-1:cds;Parent=Msa0795430-mRNA-1 |
| chr5_3 | three_prime_UTR | 7378977 | 7378996 | 7378977 | ID=Msa0795430-mRNA-1:three_prime_utr;Parent=Msa0795430-mRNA-1 |
| chr5_3 | three_prime_UTR | 7378485 | 7378632 | 7378485 | ID=Msa0795430-mRNA-1:three_prime_utr;Parent=Msa0795430-mRNA-1 |
| chr5_3 | three_prime_UTR | 7378194 | 7378341 | 7378194 | ID=Msa0795430-mRNA-1:three_prime_utr;Parent=Msa0795430-mRNA-1 |
| chr5_3 | three_prime_UTR | 7377514 | 7377582 | 7377514 | ID=Msa0795430-mRNA-1:three_prime_utr;Parent=Msa0795430-mRNA-1 |
| chr5_3 | three_prime_UTR | 7376976 | 7377113 | 7376976 | ID=Msa0795430-mRNA-1:three_prime_utr;Parent=Msa0795430-mRNA-1 |
| chr5_3 | three_prime_UTR | 7376619 | 7376884 | 7376619 | ID=Msa0795430-mRNA-1:three_prime_utr;Parent=Msa0795430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
