AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0934420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0934420 MtrunA17_Chr4g0058081 37.712 236 135 6 45 278 118 343 3.66e-45 160
Msa0934420 MtrunA17_Chr4g0041521 36.100 241 144 5 39 278 108 339 6.83e-44 156
Msa0934420 MtrunA17_Chr4g0041481 36.100 241 144 5 39 278 108 339 1.08e-43 156
Msa0934420 MtrunA17_Chr4g0053311 38.696 230 128 8 55 281 125 344 2.33e-41 150
Msa0934420 MtrunA17_Chr1g0208261 38.462 234 131 8 51 281 175 398 2.73e-41 153
Msa0934420 MtrunA17_Chr3g0116551 36.709 237 137 7 45 278 118 344 2.17e-40 147
Msa0934420 MtrunA17_Chr4g0041471 36.364 231 134 7 51 278 121 341 4.40e-40 146
Msa0934420 MtrunA17_Chr4g0060251 35.931 231 136 7 51 278 123 344 1.15e-39 145
Msa0934420 MtrunA17_Chr4g0024411 35.498 231 137 7 51 278 121 342 1.44e-39 145
Msa0934420 MtrunA17_Chr5g0405751 35.498 231 137 7 51 278 122 343 2.82e-39 144
Msa0934420 MtrunA17_Chr2g0319991 36.638 232 135 7 51 279 122 344 4.77e-39 144
Msa0934420 MtrunA17_Chr4g0040881 35.371 229 136 7 53 278 125 344 1.18e-38 142
Msa0934420 MtrunA17_Chr3g0134231 37.391 230 131 8 55 281 145 364 1.27e-38 145
Msa0934420 MtrunA17_Chr2g0325121 37.004 227 132 5 54 278 119 336 1.37e-38 142
Msa0934420 MtrunA17_Chr3g0142071 36.626 243 137 8 38 278 128 355 1.92e-38 144
Msa0934420 MtrunA17_Chr4g0041061 35.371 229 136 7 53 278 125 344 2.14e-38 142
Msa0934420 MtrunA17_Chr4g0040851 35.371 229 135 6 54 279 142 360 2.71e-38 142
Msa0934420 MtrunA17_Chr2g0311381 40.179 224 113 7 49 263 130 341 3.31e-38 141
Msa0934420 MtrunA17_Chr4g0041081 34.498 229 138 7 53 278 125 344 9.59e-38 140
Msa0934420 MtrunA17_Chr3g0144281 34.752 282 163 12 2 278 82 347 1.95e-37 139
Msa0934420 MtrunA17_Chr2g0315491 34.348 230 141 6 51 278 119 340 2.13e-37 139
Msa0934420 MtrunA17_Chr7g0248391 36.170 235 137 7 51 283 119 342 2.53e-37 139
Msa0934420 MtrunA17_Chr2g0283671 38.596 228 126 7 54 279 13 228 5.81e-36 132
Msa0934420 MtrunA17_Chr2g0283741 35.268 224 137 6 56 278 142 358 1.94e-35 134
Msa0934420 MtrunA17_Chr2g0311471 39.648 227 128 5 55 280 130 348 6.62e-35 132
Msa0934420 MtrunA17_Chr1g0153011 37.391 230 131 8 55 281 126 345 6.91e-35 134
Msa0934420 MtrunA17_Chr7g0248811 36.245 229 133 7 51 277 117 334 1.38e-34 131
Msa0934420 MtrunA17_Chr2g0283901 36.245 229 135 6 54 280 138 357 2.56e-32 128
Msa0934420 MtrunA17_Chr2g0311391 35.526 228 127 8 55 276 155 368 3.79e-31 122
Msa0934420 MtrunA17_Chr8g0379151 35.043 234 132 8 51 278 153 372 1.30e-29 118
Msa0934420 MtrunA17_Chr1g0156161 33.992 253 145 11 35 279 27 265 3.15e-28 112
Msa0934420 MtrunA17_Chr0c27g0493921 33.480 227 139 7 55 279 133 349 3.96e-28 114
Msa0934420 MtrunA17_Chr4g0070441 34.951 206 126 6 55 258 133 332 3.78e-27 111
Msa0934420 MtrunA17_Chr1g0155781 30.045 223 132 7 52 259 132 345 9.52e-23 99.0
Msa0934420 MtrunA17_Chr1g0199131 28.185 259 145 9 35 263 108 355 1.07e-21 96.3
Msa0934420 MtrunA17_Chr4g0035551 31.081 222 127 9 54 259 130 341 1.13e-19 90.1
Msa0934420 MtrunA17_Chr2g0283751 31.013 158 101 4 47 203 135 285 2.17e-18 85.1
Msa0934420 MtrunA17_Chr7g0248421 33.548 155 89 6 80 232 57 199 7.07e-16 76.3
Msa0934420 MtrunA17_Chr1g0156771 34.127 126 70 4 36 153 34 154 8.54e-14 68.9
Msa0934420 MtrunA17_Chr2g0283661 34.454 119 68 4 162 279 163 272 1.04e-12 68.2
Msa0934420 MtrunA17_Chr7g0248371 39.048 105 55 4 176 278 34 131 1.06e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0934420 AT3G48340.1 40.870 230 124 6 51 278 124 343 2.31e-47 166
Msa0934420 AT3G43960.1 41.200 250 125 11 35 278 113 346 5.76e-43 155
Msa0934420 AT5G50260.1 36.140 285 148 11 18 278 68 342 6.70e-42 152
Msa0934420 AT3G19400.1 37.860 243 132 8 39 277 120 347 1.05e-41 151
Msa0934420 AT3G49340.1 37.826 230 129 7 51 278 123 340 3.09e-41 150
Msa0934420 AT3G48350.1 38.655 238 132 8 45 278 116 343 6.72e-41 149
Msa0934420 AT1G06260.1 35.798 257 153 5 24 278 96 342 2.78e-40 147
Msa0934420 AT4G11310.1 37.445 227 128 6 55 278 137 352 4.47e-40 147
Msa0934420 AT5G45890.1 38.158 228 127 8 55 279 130 346 5.57e-40 146
Msa0934420 AT4G11320.2 36.555 238 135 7 44 278 135 359 9.50e-40 146
Msa0934420 AT4G11320.1 36.555 238 135 7 44 278 135 359 9.50e-40 146
Msa0934420 AT5G43060.1 36.466 266 145 10 30 281 101 356 9.69e-40 148
Msa0934420 AT4G35350.1 38.696 230 129 8 51 278 133 352 4.74e-39 144
Msa0934420 AT1G20850.1 36.885 244 140 8 37 278 122 353 2.83e-38 142
Msa0934420 AT1G29090.1 38.362 232 129 8 51 278 133 354 2.95e-38 142
Msa0934420 AT4G36880.1 35.965 228 133 7 54 278 144 361 4.12e-38 142
Msa0934420 AT1G09850.1 34.767 279 169 8 2 278 66 333 4.67e-38 143
Msa0934420 AT2G27420.1 37.021 235 132 7 50 278 123 347 1.20e-37 140
Msa0934420 AT2G34080.1 36.797 231 132 8 51 278 125 344 3.92e-37 139
Msa0934420 AT1G29080.1 39.565 230 126 8 52 278 126 345 6.10e-37 138
Msa0934420 AT1G47128.1 36.179 246 143 8 38 281 122 355 1.30e-36 140
Msa0934420 AT3G19390.1 36.123 227 132 7 55 278 129 345 5.17e-35 135
Msa0934420 AT4G23520.1 35.526 228 132 8 55 278 133 349 2.47e-33 129
Msa0934420 AT1G29110.1 36.681 229 120 8 54 279 128 334 3.53e-32 125
Msa0934420 AT5G60360.1 33.186 226 141 5 55 279 141 357 4.12e-30 120
Msa0934420 AT5G60360.2 32.743 226 141 5 55 279 141 356 1.15e-29 119
Msa0934420 AT3G45310.1 32.018 228 145 5 53 279 139 357 2.41e-28 115
Msa0934420 AT3G45310.2 32.018 228 144 5 53 279 139 356 3.32e-28 114
Msa0934420 AT5G60360.3 34.146 205 129 4 55 258 141 340 3.37e-28 114
Msa0934420 AT3G19400.2 41.176 170 86 7 39 204 120 279 8.66e-28 112
Msa0934420 AT4G35350.2 40.741 162 88 7 51 210 133 288 2.11e-27 110
Msa0934420 AT3G48350.2 38.922 167 94 6 45 208 116 277 4.05e-25 104
Msa0934420 AT2G21430.1 31.364 220 125 8 54 257 131 340 1.48e-20 93.2
Msa0934420 AT4G39090.1 31.364 220 125 8 54 257 134 343 4.16e-20 91.7
Msa0934420 AT3G54940.2 28.139 231 139 8 51 263 133 354 2.38e-19 89.7
Msa0934420 AT4G16190.1 30.472 233 133 10 52 268 137 356 8.51e-19 88.2
Msa0934420 AT3G54940.3 30.263 152 94 4 51 194 133 280 6.47e-15 75.1
Msa0934420 AT1G02305.1 24.907 269 160 11 29 266 79 336 3.38e-13 71.2
Msa0934420 AT1G02300.1 26.718 262 142 11 47 263 94 350 2.62e-12 68.6

Find 159 sgRNAs with CRISPR-Local

Find 398 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTACTTCATGAATTTAATT+TGG 0.087326 6_3:+4268685 Msa0934420:exon
ACCAATTATCGATTTGATTT+TGG 0.121131 6_3:+4263542 Msa0934420:five_prime_UTR
TTTGGGCATTGACAAATATT+TGG 0.161136 6_3:+4268703 Msa0934420:three_prime_UTR
ACCAAAATCAAATCGATAAT+TGG 0.189814 6_3:-4263543 None:intergenic
CTTATATTTATAAAATTCTT+TGG 0.206129 6_3:-4266219 None:intergenic
ATAATAATTATGTCTTCTTT+TGG 0.244960 6_3:+4263596 Msa0934420:five_prime_UTR
TTATCGTGGTCGCATTGTTC+AGG 0.276214 6_3:+4265282 Msa0934420:CDS
TGGAAAATTAAGAATACATA+TGG 0.280793 6_3:+4266344 Msa0934420:CDS
AACCGGATTTGCTCGGGTCT+TGG 0.285892 6_3:+4265171 Msa0934420:CDS
GTTAACGTCATCCATTAGTT+TGG 0.288918 6_3:-4262420 None:intergenic
ATAATAATAATGCCTTCTTT+TGG 0.302143 6_3:+4262729 Msa0934420:five_prime_UTR
CTACTTCATGAATTTAATTT+GGG 0.309550 6_3:+4268686 Msa0934420:three_prime_UTR
TTGCATAATGTTTGCATTGT+TGG 0.310030 6_3:+4266293 Msa0934420:CDS
ACAACCCCTCCTATGGAAAT+AGG 0.318008 6_3:-4262640 None:intergenic
ATCCCACCCAATCATCGATT+TGG 0.324684 6_3:+4262676 Msa0934420:five_prime_UTR
CCTCTTCCCTCTTGGAGAAT+AGG 0.329496 6_3:-4267572 None:intergenic
CTTGTCTCTTTACCCTTGTA+AGG 0.329562 6_3:-4266059 None:intergenic
ACTTAATTGTGTCAATAGTA+TGG 0.330623 6_3:-4266319 None:intergenic
CTATTGACACAATTAAGTTT+TGG 0.330726 6_3:+4266324 Msa0934420:CDS
AAGGCTTTCGACAGCATATA+TGG 0.331974 6_3:-4265883 None:intergenic
GCGGCTTGAATCATAATTCT+TGG 0.333912 6_3:-4265221 None:intergenic
ATCTTTGCCCTCTTCCCTCT+TGG 0.337977 6_3:-4267580 None:intergenic
CTTATTGAAGGACAACTAAT+AGG 0.339921 6_3:-4268750 None:intergenic
CGTGCAGGTGCATCTACTTA+TGG 0.346884 6_3:+4262599 Msa0934420:intron
ATAAATATAAGGATGGGATT+TGG 0.349610 6_3:+4266231 Msa0934420:CDS
CTGGCAAATTTGAAGTCAAC+AGG 0.364435 6_3:+4268651 Msa0934420:CDS
TTTAATGATTTGAAAGAAAT+CGG 0.368928 6_3:+4266960 Msa0934420:CDS
AGAATACATATGGGAACAAA+TGG 0.368945 6_3:+4266354 Msa0934420:CDS
ACGTATATCATTGCGGTAAC+GGG 0.373174 6_3:-4266191 None:intergenic
TTATATTTATAAAATTCTTT+GGG 0.376669 6_3:-4266218 None:intergenic
ACCGGATTTGCTCGGGTCTT+GGG 0.377683 6_3:+4265172 Msa0934420:CDS
TTAACGTCATCCATTAGTTT+GGG 0.380065 6_3:-4262419 None:intergenic
GATTAAACCAAATCGATGAT+TGG 0.384436 6_3:-4262683 None:intergenic
ACTGGTCATGTAAAAGTTCC+TGG 0.395404 6_3:+4266119 Msa0934420:CDS
TCTATGCAACGAATTTCAAA+TGG 0.400811 6_3:+4268906 Msa0934420:three_prime_UTR
TCAGTAGCAACTTCACCTTT+TGG 0.405393 6_3:-4267901 None:intergenic
ATTTCCAACATTATTCTTTG+TGG 0.405740 6_3:+4268834 Msa0934420:three_prime_UTR
TGGTGCCAGTCGACCTCGTC+TGG 0.407923 6_3:-4265322 None:intergenic
TGACGAGAGTCATTTGCTTC+GGG 0.417023 6_3:+4266154 Msa0934420:CDS
CAATTCTGTACCATCTCATC+TGG 0.420799 6_3:+4267629 Msa0934420:CDS
GACCGAGACATAATAGAAAC+AGG 0.423710 6_3:+4264505 Msa0934420:five_prime_UTR
GTGACGAGAGTCATTTGCTT+CGG 0.424226 6_3:+4266153 Msa0934420:CDS
GATTAATAACCGGATTTGCT+CGG 0.426263 6_3:+4265164 Msa0934420:CDS
CAATTGTCTGATGATGATAT+TGG 0.427395 6_3:+4267967 Msa0934420:CDS
TTGAATACATAAAGAGGAAC+GGG 0.427836 6_3:+4266015 Msa0934420:CDS
CTCCGGTCTTGATGTGGATA+AGG 0.429547 6_3:-4265902 None:intergenic
ACCCAAGACCCGAGCAAATC+CGG 0.430831 6_3:-4265173 None:intergenic
GCAGCTGATTTCGAGGTTTG+TGG 0.435111 6_3:+4266802 Msa0934420:intron
TTTCCAACATTATTCTTTGT+GGG 0.436183 6_3:+4268835 Msa0934420:three_prime_UTR
CTGAAATGTTGGCAAGAAAA+CGG 0.436250 6_3:+4262373 None:intergenic
ATTAAACCAAATCGATGATT+GGG 0.438106 6_3:-4262682 None:intergenic
CGAACTCGAACAATTGTTGA+TGG 0.444371 6_3:+4266266 Msa0934420:CDS
ATTAATAACCGGATTTGCTC+GGG 0.445363 6_3:+4265165 Msa0934420:CDS
AGTTCAGAAACGCTTATTGA+AGG 0.448338 6_3:-4268762 None:intergenic
GACGTTAACAAAGACAAAAC+TGG 0.452215 6_3:+4262434 Msa0934420:five_prime_UTR
TATCGTGGTCGCATTGTTCA+GGG 0.454378 6_3:+4265283 Msa0934420:CDS
TTACTCACCACATTCGCCTT+GGG 0.454880 6_3:-4265374 None:intergenic
GAAATGAATCGATTAATAAC+CGG 0.457995 6_3:+4265154 Msa0934420:intron
AATCAAATCGATAATTGGTT+GGG 0.459670 6_3:-4263538 None:intergenic
CAGATTGACAACCCCTCCTA+TGG 0.463837 6_3:-4262647 None:intergenic
TGAAATGTTGGCAAGAAAAC+GGG 0.464444 6_3:+4262374 None:intergenic
CATCTACTTATGGCTTATCA+TGG 0.464584 6_3:+4262609 Msa0934420:five_prime_UTR
GAATACATATGGGAACAAAT+GGG 0.467377 6_3:+4266355 Msa0934420:CDS
AGGATTTCGCAACGGCCATA+TGG 0.468478 6_3:-4266419 None:intergenic
AATAAAATAAATACCTGGGT+CGG 0.469818 6_3:-4262776 None:intergenic
AACGTATATCATTGCGGTAA+CGG 0.470232 6_3:-4266192 None:intergenic
CTGTGCCTATTTCCATAGGA+GGG 0.474234 6_3:+4262635 Msa0934420:five_prime_UTR
TATTTACAGGTGGGACCAAA+AGG 0.476441 6_3:+4267886 Msa0934420:intron
TAAGGATGGGATTTGGAGGA+AGG 0.477856 6_3:+4266238 Msa0934420:CDS
GATGCCATGGGACTCTTGCC+AGG 0.478933 6_3:-4267928 None:intergenic
AAATCAAATCGATAATTGGT+TGG 0.479330 6_3:-4263539 None:intergenic
AGACAACCTGGTAATAGTAT+TGG 0.480323 6_3:-4268799 None:intergenic
ATAGAGAATTGCATATTTCG+TGG 0.483028 6_3:-4268888 None:intergenic
TACCTGTTTCTATTATGTCT+CGG 0.484505 6_3:-4264507 None:intergenic
GTTACTCACCACATTCGCCT+TGG 0.487038 6_3:-4265375 None:intergenic
CCTATTCTCCAAGAGGGAAG+AGG 0.488545 6_3:+4267572 Msa0934420:CDS
CGACAGCATATATGGAAGCC+AGG 0.489445 6_3:-4265875 None:intergenic
ATAAAATAAATACCTGGGTC+GGG 0.491291 6_3:-4262775 None:intergenic
CTATGCAACGAATTTCAAAT+GGG 0.494425 6_3:+4268907 Msa0934420:three_prime_UTR
ACTTGCCAGACGAGGTCGAC+TGG 0.496853 6_3:+4265317 Msa0934420:CDS
AAAGTTCCTGGTCATGGAAA+CGG 0.503181 6_3:+4266131 Msa0934420:CDS
GGAAAATTAAGAATACATAT+GGG 0.503475 6_3:+4266345 Msa0934420:CDS
GAGGAAATTAACGAACTAGT+AGG 0.507037 6_3:+4266587 Msa0934420:CDS
CATGTAAAAGTTCCTGGTCA+TGG 0.508992 6_3:+4266125 Msa0934420:CDS
TCTTGAAGAATTAAGCGCTC+AGG 0.509616 6_3:+4265926 Msa0934420:CDS
AATCCCACAAAGAATAATGT+TGG 0.509955 6_3:-4268838 None:intergenic
CTAGTACTACATACCTGGGT+CGG 0.512737 6_3:-4263637 None:intergenic
CTCGCTCCGTTACATATCCT+AGG 0.513599 6_3:+4265347 Msa0934420:CDS
GTGAATAAAATCAATTTCAC+AGG 0.514000 6_3:-4268945 None:intergenic
ACTGTGCCTATTTCCATAGG+AGG 0.515188 6_3:+4262634 Msa0934420:five_prime_UTR
AATATAAGGATGGGATTTGG+AGG 0.521520 6_3:+4266234 Msa0934420:CDS
GGGAAGAGAGTTAAAATCAC+TGG 0.524252 6_3:+4266101 Msa0934420:CDS
TGTGCCTATTTCCATAGGAG+GGG 0.527905 6_3:+4262636 Msa0934420:five_prime_UTR
CAAAGGATGTTGCTATGCCC+TGG 0.527946 6_3:+4265857 Msa0934420:intron
AAGAAAGCTACCTCTAGCAC+AGG 0.528209 6_3:-4266458 None:intergenic
ATGTGGATTGAAAGAGATTG+CGG 0.533688 6_3:+4266392 Msa0934420:CDS
CGCTTTCCTATTCTCCAAGA+GGG 0.533886 6_3:+4267566 Msa0934420:CDS
CTATTCTCCAAGAGGGAAGA+GGG 0.534610 6_3:+4267573 Msa0934420:CDS
GGATTTGCTCGGGTCTTGGG+TGG 0.537985 6_3:+4265175 Msa0934420:CDS
TGAGATGGTACAGAATTGAT+TGG 0.538514 6_3:-4267624 None:intergenic
AGAGATTGCGGATTACCATA+TGG 0.538911 6_3:+4266404 Msa0934420:CDS
TAGTACTACATACCTGGGTC+GGG 0.539168 6_3:-4263636 None:intergenic
AGCCTTATCCACATCAAGAC+CGG 0.539452 6_3:+4265900 Msa0934420:CDS
AATCAATAAGAATAGAAAGA+TGG 0.540357 6_3:+4268017 Msa0934420:CDS
TTGTCTCTTTACCCTTGTAA+GGG 0.542447 6_3:-4266058 None:intergenic
GTTACTGTGCCTATTTCCAT+AGG 0.543664 6_3:+4262631 Msa0934420:five_prime_UTR
AGATGTCGTCTCTCTAAAAG+AGG 0.544043 6_3:+4266080 Msa0934420:CDS
AGGTATTTGAATACATAAAG+AGG 0.546368 6_3:+4266009 Msa0934420:CDS
TAATTTCCAATACTATTACC+AGG 0.547032 6_3:+4268793 Msa0934420:three_prime_UTR
AAACCAAATCGATGATTGGG+TGG 0.560538 6_3:-4262679 None:intergenic
ATTGCTGTCTCTGCATATGA+TGG 0.561926 6_3:-4267997 None:intergenic
GATGCATCCTGACCACCTCC+AGG 0.562423 6_3:-4268605 None:intergenic
CATTCGCCTTGGGCAACCCT+AGG 0.563425 6_3:-4265364 None:intergenic
CTGTACCTAAAAGTCATAGC+AGG 0.566003 6_3:+4262462 Msa0934420:five_prime_UTR
ACAATTACTGATCATCGTGC+TGG 0.570198 6_3:+4268632 Msa0934420:CDS
TGACAGAGGTAACGGTAACA+AGG 0.570296 6_3:+4265962 Msa0934420:CDS
CTAAACAATACCAGATGAGA+TGG 0.572125 6_3:-4267639 None:intergenic
AGTGGCAACAGCAGATGCCA+TGG 0.575266 6_3:-4267941 None:intergenic
GATATGTAACGGAGCGAGCA+TGG 0.575738 6_3:-4265342 None:intergenic
GTGGCAACAGCAGATGCCAT+GGG 0.576151 6_3:-4267940 None:intergenic
TCGTGGTCGCATTGTTCAGG+GGG 0.582354 6_3:+4265285 Msa0934420:CDS
GCTTAATTCTTCAAGAACTC+CGG 0.584191 6_3:-4265919 None:intergenic
TTTGAATACATAAAGAGGAA+CGG 0.584506 6_3:+4266014 Msa0934420:CDS
TCGTCACCGTTTCCATGACC+AGG 0.586625 6_3:-4266137 None:intergenic
TCATTTGCAGGGCACTGAAG+AGG 0.587334 6_3:+4266568 Msa0934420:intron
ATCGTGGTCGCATTGTTCAG+GGG 0.591913 6_3:+4265284 Msa0934420:CDS
CAAGAACTCCGGTCTTGATG+TGG 0.594900 6_3:-4265908 None:intergenic
AGGGTTGCCCAAGGCGAATG+TGG 0.595130 6_3:+4265367 Msa0934420:CDS
AATACATATGGGAACAAATG+GGG 0.598223 6_3:+4266356 Msa0934420:CDS
AACGGTAACAAGGGATGTAA+CGG 0.598475 6_3:+4265972 Msa0934420:CDS
TCGCTCCGTTACATATCCTA+GGG 0.601139 6_3:+4265348 Msa0934420:CDS
GTGTCTTGTGACAGAGGTAA+CGG 0.607196 6_3:+4265954 Msa0934420:CDS
TGGACACTGAACAGTTTCAG+TGG 0.608580 6_3:+4266822 Msa0934420:CDS
CAGGATAATGAGCATCGAGA+AGG 0.609449 6_3:-4266439 None:intergenic
ATACATATGGGAACAAATGG+GGG 0.611571 6_3:+4266357 Msa0934420:CDS
GACAGCATATATGGAAGCCA+GGG 0.611978 6_3:-4265874 None:intergenic
ATATCATCATCAGACAATTG+TGG 0.612089 6_3:-4267964 None:intergenic
TGCTCATTATCCTGTGCTAG+AGG 0.625163 6_3:+4266448 Msa0934420:CDS
TACTACATACCTGGGTCGGG+TGG 0.626200 6_3:-4263633 None:intergenic
AAATAAATACCTGGGTCGGG+TGG 0.626403 6_3:-4262772 None:intergenic
AACCAAATCGATGATTGGGT+GGG 0.626947 6_3:-4262678 None:intergenic
GCAACCTGGCAAGAGTCCCA+TGG 0.627514 6_3:+4267924 Msa0934420:CDS
GACAACTAATAGGCTCAACT+AGG 0.630668 6_3:-4268740 None:intergenic
GATGTCGTCTCTCTAAAAGA+GGG 0.630983 6_3:+4266081 Msa0934420:CDS
TATAGAAAATAAAGACAACC+TGG 0.632473 6_3:-4268811 None:intergenic
GAAATCGTGTCTTGTGACAG+AGG 0.634008 6_3:+4265948 Msa0934420:CDS
GGGATTAACGTATATCATTG+CGG 0.637029 6_3:-4266198 None:intergenic
ATCATCAGACAATTGTGGAG+TGG 0.637497 6_3:-4267959 None:intergenic
GGCAACCCTAGGATATGTAA+CGG 0.640932 6_3:-4265353 None:intergenic
CGTCTCTGACTTGCCAGACG+AGG 0.642134 6_3:+4265309 Msa0934420:CDS
TACTTACTCAGATCTAAGAG+AGG 0.648220 6_3:-4262511 None:intergenic
GAAGTTGCTACTGAGCAACC+TGG 0.650794 6_3:+4267910 Msa0934420:CDS
GCGCTTTCCTATTCTCCAAG+AGG 0.651050 6_3:+4267565 Msa0934420:CDS
ACATATCCTAGGGTTGCCCA+AGG 0.661221 6_3:+4265358 Msa0934420:CDS
ACTCAGATCTAAGAGAGGAG+CGG 0.677993 6_3:-4262506 None:intergenic
GACAGAGGTAACGGTAACAA+GGG 0.680528 6_3:+4265963 Msa0934420:CDS
TGGCAAATTTGAAGTCAACA+GGG 0.696531 6_3:+4268652 Msa0934420:CDS
CATCGAGAAGGATTTCGCAA+CGG 0.698659 6_3:-4266427 None:intergenic
GGTAACAAGGGATGTAACGG+AGG 0.721444 6_3:+4265975 Msa0934420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTATTAAAT+GGG + chr6_3:4266857-4266876 Msa0934420:intron 0.0%
!! ATATAATAAAATAAATACCT+GGG - chr6_3:4262783-4262802 None:intergenic 10.0%
!! AATATAATAAAATAAATACC+TGG - chr6_3:4262784-4262803 None:intergenic 10.0%
!! ATAAATCTAATTATTACTAT+TGG + chr6_3:4262811-4262830 Msa0934420:intron 10.0%
!! TAAATCTAATTATTACTATT+GGG + chr6_3:4262812-4262831 Msa0934420:intron 10.0%
!! ATTGAAACAAAAAAAAATAA+AGG + chr6_3:4263220-4263239 Msa0934420:intron 10.0%
!! TGTTACATAAAATTAAATTA+AGG + chr6_3:4263250-4263269 Msa0934420:intron 10.0%
!! GTTACATAAAATTAAATTAA+GGG + chr6_3:4263251-4263270 Msa0934420:intron 10.0%
!! TTTAAACATATAAATAGAAA+AGG - chr6_3:4263401-4263420 None:intergenic 10.0%
!! CATTAAATAATTTATGTATT+TGG - chr6_3:4263794-4263813 None:intergenic 10.0%
!! TTGAAAATCAATAATATTAT+GGG - chr6_3:4264003-4264022 None:intergenic 10.0%
!! TTTGAAAATCAATAATATTA+TGG - chr6_3:4264004-4264023 None:intergenic 10.0%
!!! AAGTATTGTATTATAAAAAA+GGG - chr6_3:4264368-4264387 None:intergenic 10.0%
!!! ATTTATTTTGACAAATAAAA+AGG + chr6_3:4264936-4264955 Msa0934420:intron 10.0%
!! CTTATATTTATAAAATTCTT+TGG - chr6_3:4266222-4266241 None:intergenic 10.0%
!!! CAAAGAATTTTATAAATATA+AGG + chr6_3:4266220-4266239 Msa0934420:CDS 10.0%
!!! AATTTTATAAATATAAGGAT+GGG + chr6_3:4266225-4266244 Msa0934420:CDS 10.0%
!! TAGATATATTAATGATATAT+TGG + chr6_3:4267659-4267678 Msa0934420:intron 10.0%
!!! TTTTTTTTTTTTTTTTGTAG+GGG + chr6_3:4268579-4268598 Msa0934420:intron 10.0%
!! ATATAATTAAACACGTAAAT+AGG - chr6_3:4262553-4262572 None:intergenic 15.0%
!!! ATAATAATTATGTCTTCTTT+TGG + chr6_3:4263596-4263615 Msa0934420:five_prime_UTR 15.0%
!!! TAATAATTATGTCTTCTTTT+GGG + chr6_3:4263597-4263616 Msa0934420:five_prime_UTR 15.0%
!!! ATTAATTGTCTTTTGTAAAT+AGG + chr6_3:4263824-4263843 Msa0934420:intron 15.0%
!!! TAACTTTCATGATTTTTTAT+AGG + chr6_3:4264147-4264166 Msa0934420:intron 15.0%
!!! AACTTTCATGATTTTTTATA+GGG + chr6_3:4264148-4264167 Msa0934420:intron 15.0%
!!! CAAGTATTGTATTATAAAAA+AGG - chr6_3:4264369-4264388 None:intergenic 15.0%
!!! AATTTTACAAAATCAATTCA+TGG - chr6_3:4264684-4264703 None:intergenic 15.0%
!! CAAAATATATATAATCACTA+AGG - chr6_3:4264889-4264908 None:intergenic 15.0%
!! TACATCATTGAAATAAAAAA+GGG - chr6_3:4265467-4265486 None:intergenic 15.0%
!! ATACATCATTGAAATAAAAA+AGG - chr6_3:4265468-4265487 None:intergenic 15.0%
!!! ATTTGTTGTTATATATGTTT+GGG + chr6_3:4265829-4265848 Msa0934420:intron 15.0%
!!! GAATTTTATAAATATAAGGA+TGG + chr6_3:4266224-4266243 Msa0934420:CDS 15.0%
!! AATAAATGATAAATAGTTGT+GGG - chr6_3:4266513-4266532 None:intergenic 15.0%
!! AAATAAATGATAAATAGTTG+TGG - chr6_3:4266514-4266533 None:intergenic 15.0%
!! TTTAATGATTTGAAAGAAAT+CGG + chr6_3:4266960-4266979 Msa0934420:CDS 15.0%
!!! AAAAAAACATTTGATTTCAA+CGG - chr6_3:4267002-4267021 None:intergenic 15.0%
!!! TTTCTTTTTTAATCTTATGT+GGG + chr6_3:4267088-4267107 Msa0934420:intron 15.0%
!!! TTTTTAATTTAGTTATGTAG+AGG - chr6_3:4267769-4267788 None:intergenic 15.0%
!!! TTTTTTTTTTTTTTTGTAGG+GGG + chr6_3:4268580-4268599 Msa0934420:intron 15.0%
!!! TTTTTTAAAACCCAAACTAA+TGG + chr6_3:4262409-4262428 Msa0934420:five_prime_UTR 20.0%
!!! ATAATAATAATGCCTTCTTT+TGG + chr6_3:4262729-4262748 Msa0934420:five_prime_UTR 20.0%
!! ATTAAAAACAATCCAAAAGA+AGG - chr6_3:4262744-4262763 None:intergenic 20.0%
!!! TTTTATTGCAAATAAAGTCT+TGG + chr6_3:4263060-4263079 Msa0934420:intron 20.0%
!!! CAATGTAAAACTACTATTTT+TGG - chr6_3:4263919-4263938 None:intergenic 20.0%
!!! CAAAAATAGTAGTTTTACAT+TGG + chr6_3:4263917-4263936 Msa0934420:intron 20.0%
!!! TAGTTTTAAGATCATTTGAT+TGG - chr6_3:4264478-4264497 None:intergenic 20.0%
!! GACTCTAATTAAAAAAACAT+TGG + chr6_3:4264812-4264831 Msa0934420:intron 20.0%
!! ATATATAATCACTAAGGTTA+TGG - chr6_3:4264883-4264902 None:intergenic 20.0%
!!! GTAAATTTTTAACTAAAGTG+AGG - chr6_3:4264968-4264987 None:intergenic 20.0%
!! CTGATTTAAACAAAAATTTG+CGG - chr6_3:4265243-4265262 None:intergenic 20.0%
!! TTTCATAAGCTATAATAAGT+TGG + chr6_3:4265726-4265745 Msa0934420:intron 20.0%
!!! CATTTGTTGTTATATATGTT+TGG + chr6_3:4265828-4265847 Msa0934420:intron 20.0%
!! TGGAAAATTAAGAATACATA+TGG + chr6_3:4266344-4266363 Msa0934420:CDS 20.0%
!! GGAAAATTAAGAATACATAT+GGG + chr6_3:4266345-4266364 Msa0934420:CDS 20.0%
!!! CTTTTTGAATAGATTTATAC+CGG + chr6_3:4266637-4266656 Msa0934420:CDS 20.0%
!!! ATTTTGTTCTGTTTCTTTAT+TGG + chr6_3:4266894-4266913 Msa0934420:intron 20.0%
!!! CTTTCTTTTTTAATCTTATG+TGG + chr6_3:4267087-4267106 Msa0934420:intron 20.0%
!!! CAGAAAACAAATTGATTTAT+TGG - chr6_3:4267508-4267527 None:intergenic 20.0%
!! TGTAAACTCTAATTATTTAC+AGG + chr6_3:4267873-4267892 Msa0934420:intron 20.0%
!! AATCAATAAGAATAGAAAGA+TGG + chr6_3:4268017-4268036 Msa0934420:CDS 20.0%
!! TAAAATGCATGTCTATATAT+TGG + chr6_3:4268206-4268225 Msa0934420:intron 20.0%
!!! TGGGTTTTTTTTTTATTGAA+AGG + chr6_3:4268362-4268381 Msa0934420:intron 20.0%
!!! TATCATTTTCTTGTTTTAAC+CGG - chr6_3:4268406-4268425 None:intergenic 20.0%
!! GAAGCAAATAAAAAATAAAC+TGG - chr6_3:4268528-4268547 None:intergenic 20.0%
!! AAAAAAAAAAAAACAGGGTA+AGG - chr6_3:4268563-4268582 None:intergenic 20.0%
!!! CTACTTCATGAATTTAATTT+GGG + chr6_3:4268686-4268705 Msa0934420:three_prime_UTR 20.0%
!!! TAGTTTGGGTTTTAAAAAAC+TGG - chr6_3:4262408-4262427 None:intergenic 25.0%
! ATTAAACCAAATCGATGATT+GGG - chr6_3:4262685-4262704 None:intergenic 25.0%
! AATAAAATAAATACCTGGGT+CGG - chr6_3:4262779-4262798 None:intergenic 25.0%
! TCTAATTATTACTATTGGGA+TGG + chr6_3:4262816-4262835 Msa0934420:intron 25.0%
! AAGAATTGAAACCAAATTCA+AGG + chr6_3:4263104-4263123 Msa0934420:intron 25.0%
! ATTGACATGACAAATTTACA+AGG - chr6_3:4263295-4263314 None:intergenic 25.0%
! TATCTACTTATGGCTTATAA+TGG + chr6_3:4263467-4263486 Msa0934420:intron 25.0%
!!! TTACTGTGCTTATTTTTCAT+AGG + chr6_3:4263490-4263509 Msa0934420:intron 25.0%
! AATCAAATCGATAATTGGTT+GGG - chr6_3:4263541-4263560 None:intergenic 25.0%
! AAATCAAATCGATAATTGGT+TGG - chr6_3:4263542-4263561 None:intergenic 25.0%
!!! ACCAATTATCGATTTGATTT+TGG + chr6_3:4263542-4263561 Msa0934420:five_prime_UTR 25.0%
! ACCAAAATCAAATCGATAAT+TGG - chr6_3:4263546-4263565 None:intergenic 25.0%
! GTCAACTTTCTCTTATAAAT+AGG - chr6_3:4263725-4263744 None:intergenic 25.0%
!!! TACTATTTTTGGTTTCCTTA+GGG - chr6_3:4263908-4263927 None:intergenic 25.0%
! CTAAACTTTGAATCAAACAT+AGG - chr6_3:4264036-4264055 None:intergenic 25.0%
! AAACACATAATGAAATCTAG+AGG - chr6_3:4264061-4264080 None:intergenic 25.0%
! TCTAGATTTCATTATGTGTT+TGG + chr6_3:4264060-4264079 Msa0934420:intron 25.0%
! ATAATAGAAACAGGTAACAA+TGG + chr6_3:4264514-4264533 Msa0934420:intron 25.0%
!! TTTAATTAGAGTCGTGATTT+TGG - chr6_3:4264805-4264824 None:intergenic 25.0%
! ACAAAAAGCTAACATAACAT+TGG + chr6_3:4264994-4265013 Msa0934420:intron 25.0%
! CAAAAAGCTAACATAACATT+GGG + chr6_3:4264995-4265014 Msa0934420:intron 25.0%
! GAAAATGTAATGAATGAATG+AGG - chr6_3:4265078-4265097 None:intergenic 25.0%
! GATTCATTTCTGTGAAAATT+GGG - chr6_3:4265144-4265163 None:intergenic 25.0%
! GAAATGAATCGATTAATAAC+CGG + chr6_3:4265154-4265173 Msa0934420:intron 25.0%
! CAATTATTAGCTACTTATTG+TGG - chr6_3:4265552-4265571 None:intergenic 25.0%
! CTTATCATGATAAGTGATTA+TGG + chr6_3:4265662-4265681 Msa0934420:intron 25.0%
! AGGAAAGCTTAATGAAATAA+GGG - chr6_3:4265772-4265791 None:intergenic 25.0%
! AAGGAAAGCTTAATGAAATA+AGG - chr6_3:4265773-4265792 None:intergenic 25.0%
!! ATGTATTCAAATACCTTTTG+AGG - chr6_3:4266005-4266024 None:intergenic 25.0%
! AGGTATTTGAATACATAAAG+AGG + chr6_3:4266009-4266028 Msa0934420:CDS 25.0%
! TTTGAATACATAAAGAGGAA+CGG + chr6_3:4266014-4266033 Msa0934420:CDS 25.0%
! ATAAATATAAGGATGGGATT+TGG + chr6_3:4266231-4266250 Msa0934420:CDS 25.0%
! ACTTAATTGTGTCAATAGTA+TGG - chr6_3:4266322-4266341 None:intergenic 25.0%
!! CTATTGACACAATTAAGTTT+TGG + chr6_3:4266324-4266343 Msa0934420:CDS 25.0%
! TCTTAAAAAACTCATTTGCA+GGG + chr6_3:4266557-4266576 Msa0934420:intron 25.0%
! AATCTATTCAAAAAGCTCTT+AGG - chr6_3:4266632-4266651 None:intergenic 25.0%
! AAGAAACAGAACAAAATTGT+GGG - chr6_3:4266891-4266910 None:intergenic 25.0%
! AAAGAAACAGAACAAAATTG+TGG - chr6_3:4266892-4266911 None:intergenic 25.0%
!!! TGTGTTTTTTTCTTGTTTTG+TGG + chr6_3:4266924-4266943 Msa0934420:intron 25.0%
!!! ATTTTGATACACTTTTATGC+AGG + chr6_3:4267047-4267066 Msa0934420:intron 25.0%
! TTAATCTTATGTGGGAAATT+AGG + chr6_3:4267096-4267115 Msa0934420:intron 25.0%
! TATTAAGAAACACATACACA+AGG - chr6_3:4267163-4267182 None:intergenic 25.0%
! TATTAAGAAACACATACACA+AGG - chr6_3:4267163-4267182 None:intergenic 25.0%
!!! TGAAGTGTATAGTTTTAACT+TGG - chr6_3:4267290-4267309 None:intergenic 25.0%
!!! TCAATTTGTTTTCTGTTTTC+TGG + chr6_3:4267513-4267532 Msa0934420:intron 25.0%
! TTAGTTATGTAGAGGATAAA+TGG - chr6_3:4267761-4267780 None:intergenic 25.0%
! AAACTCTAATTATTTACAGG+TGG + chr6_3:4267876-4267895 Msa0934420:intron 25.0%
! AACTCTAATTATTTACAGGT+GGG + chr6_3:4267877-4267896 Msa0934420:intron 25.0%
!! AAATTTTTGAATTGTGTGAC+TGG + chr6_3:4268239-4268258 Msa0934420:intron 25.0%
!!! TGCAACAAATGTCTATTTTT+AGG + chr6_3:4268294-4268313 Msa0934420:intron 25.0%
! TGTATAAAACTTACAAGTGT+AGG + chr6_3:4268319-4268338 Msa0934420:intron 25.0%
! TACAAAGAAAGAAGAAACAA+TGG + chr6_3:4268342-4268361 Msa0934420:intron 25.0%
! ACAAAGAAAGAAGAAACAAT+GGG + chr6_3:4268343-4268362 Msa0934420:intron 25.0%
! GGTTAAAACAAGAAAATGAT+AGG + chr6_3:4268405-4268424 Msa0934420:intron 25.0%
! CAGATAAATAAACAATCCAA+GGG - chr6_3:4268435-4268454 None:intergenic 25.0%
! TGTTTATATGTTCTTAAACG+AGG - chr6_3:4268459-4268478 None:intergenic 25.0%
! AATAAAAAATAAACTGGTGG+TGG - chr6_3:4268522-4268541 None:intergenic 25.0%
! GCAAATAAAAAATAAACTGG+TGG - chr6_3:4268525-4268544 None:intergenic 25.0%
! GCTACTTCATGAATTTAATT+TGG + chr6_3:4268685-4268704 Msa0934420:exon 25.0%
! TAATTTCCAATACTATTACC+AGG + chr6_3:4268793-4268812 Msa0934420:three_prime_UTR 25.0%
! TATAGAAAATAAAGACAACC+TGG - chr6_3:4268814-4268833 None:intergenic 25.0%
! ATTTCCAACATTATTCTTTG+TGG + chr6_3:4268834-4268853 Msa0934420:three_prime_UTR 25.0%
! TTTCCAACATTATTCTTTGT+GGG + chr6_3:4268835-4268854 Msa0934420:three_prime_UTR 25.0%
! GTGAATAAAATCAATTTCAC+AGG - chr6_3:4268948-4268967 None:intergenic 25.0%
!!! TTGGGTTTTAAAAAACTGGT+TGG - chr6_3:4262404-4262423 None:intergenic 30.0%
! TTAACGTCATCCATTAGTTT+GGG - chr6_3:4262422-4262441 None:intergenic 30.0%
GATTAAACCAAATCGATGAT+TGG - chr6_3:4262686-4262705 None:intergenic 30.0%
ATAAAATAAATACCTGGGTC+GGG - chr6_3:4262778-4262797 None:intergenic 30.0%
!! TGTGCTTATTTTTCATAGGA+GGG + chr6_3:4263494-4263513 Msa0934420:intron 30.0%
AATACTAGTACTACATACCT+GGG - chr6_3:4263644-4263663 None:intergenic 30.0%
AAATACTAGTACTACATACC+TGG - chr6_3:4263645-4263664 None:intergenic 30.0%
CTTTCTCTTATAAATAGGAC+CGG - chr6_3:4263720-4263739 None:intergenic 30.0%
! TTGTCTTTTGTAAATAGGAC+CGG + chr6_3:4263829-4263848 Msa0934420:intron 30.0%
! TGGTTTGGACGAATAATATT+AGG + chr6_3:4263866-4263885 Msa0934420:intron 30.0%
GGTTTGGACGAATAATATTA+GGG + chr6_3:4263867-4263886 Msa0934420:intron 30.0%
!!! CTACTATTTTTGGTTTCCTT+AGG - chr6_3:4263909-4263928 None:intergenic 30.0%
AATGCTAAATATTGCCCTTA+GGG - chr6_3:4263979-4263998 None:intergenic 30.0%
AAATGCTAAATATTGCCCTT+AGG - chr6_3:4263980-4263999 None:intergenic 30.0%
ATAAAAGACACCTTCACAAA+AGG - chr6_3:4264189-4264208 None:intergenic 30.0%
!!! ACACCAACTACTTTTTATGA+AGG + chr6_3:4264238-4264257 Msa0934420:intron 30.0%
ACACCTTCATAAAAAGTAGT+TGG - chr6_3:4264244-4264263 None:intergenic 30.0%
!! TTAGATTTTTGAGCGAGTTT+TGG + chr6_3:4264446-4264465 Msa0934420:intron 30.0%
!! TACCTGTTTCTATTATGTCT+CGG - chr6_3:4264510-4264529 None:intergenic 30.0%
ATGACTATTGAACCCTTTAT+GGG - chr6_3:4265050-4265069 None:intergenic 30.0%
AATGACTATTGAACCCTTTA+TGG - chr6_3:4265051-4265070 None:intergenic 30.0%
TTCTGTGAAAATTGGGTTTA+CGG - chr6_3:4265137-4265156 None:intergenic 30.0%
CGATTCATTTCTGTGAAAAT+TGG - chr6_3:4265145-4265164 None:intergenic 30.0%
TGTAAACTTGTATACAAGAG+AGG + chr6_3:4265487-4265506 Msa0934420:intron 30.0%
TATAAGCAGTTTATCCAAAC+AGG - chr6_3:4265633-4265652 None:intergenic 30.0%
! TAATGAAATAAGGGCTTGTT+TGG - chr6_3:4265763-4265782 None:intergenic 30.0%
TTGAATACATAAAGAGGAAC+GGG + chr6_3:4266015-4266034 Msa0934420:CDS 30.0%
TGAAAAAGATTTCCCTTACA+AGG + chr6_3:4266046-4266065 Msa0934420:CDS 30.0%
GAAAAAGATTTCCCTTACAA+GGG + chr6_3:4266047-4266066 Msa0934420:CDS 30.0%
TTGCATAATGTTTGCATTGT+TGG + chr6_3:4266293-4266312 Msa0934420:CDS 30.0%
AGAATACATATGGGAACAAA+TGG + chr6_3:4266354-4266373 Msa0934420:CDS 30.0%
GAATACATATGGGAACAAAT+GGG + chr6_3:4266355-4266374 Msa0934420:CDS 30.0%
AATACATATGGGAACAAATG+GGG + chr6_3:4266356-4266375 Msa0934420:CDS 30.0%
!!! CTGCAAATGAGTTTTTTAAG+AGG - chr6_3:4266558-4266577 None:intergenic 30.0%
CTCTTAAAAAACTCATTTGC+AGG + chr6_3:4266556-4266575 Msa0934420:intron 30.0%
TGAATAGATTTATACCGGTA+AGG + chr6_3:4266642-4266661 Msa0934420:intron 30.0%
AAAGGTTATAAAGTCCTTAC+CGG - chr6_3:4266659-4266678 None:intergenic 30.0%
ACCTTTCTAAATAGAAGTTG+TGG + chr6_3:4266673-4266692 Msa0934420:intron 30.0%
! TGTTTTGTGGTATATATTGC+AGG + chr6_3:4266937-4266956 Msa0934420:intron 30.0%
TTCTCTTTCTTAAACTACTG+TGG + chr6_3:4267023-4267042 Msa0934420:intron 30.0%
! TGTCACAATTTTACATCAAG+TGG - chr6_3:4267373-4267392 None:intergenic 30.0%
! CTTTAACTTAGTTTAGTGTC+AGG + chr6_3:4267699-4267718 Msa0934420:intron 30.0%
TACGCACTAATTGATACATA+TGG - chr6_3:4267733-4267752 None:intergenic 30.0%
CAAAACAGTAAGATTGCAAT+AGG - chr6_3:4267824-4267843 None:intergenic 30.0%
ATTAGAGTTTACATGATGAG+AGG - chr6_3:4267866-4267885 None:intergenic 30.0%
ATATCATCATCAGACAATTG+TGG - chr6_3:4267967-4267986 None:intergenic 30.0%
! CAATTGTCTGATGATGATAT+TGG + chr6_3:4267967-4267986 Msa0934420:CDS 30.0%
ATGTAAAACTCGTGTTCAAT+AGG - chr6_3:4268090-4268109 None:intergenic 30.0%
TTAGAATTGGATATGCACAT+TGG + chr6_3:4268173-4268192 Msa0934420:intron 30.0%
CCAGATAAATAAACAATCCA+AGG - chr6_3:4268436-4268455 None:intergenic 30.0%
CCTTGGATTGTTTATTTATC+TGG + chr6_3:4268433-4268452 Msa0934420:intron 30.0%
AAAAAAAACAGGGTAAGGAA+TGG - chr6_3:4268558-4268577 None:intergenic 30.0%
!! TTTGGGCATTGACAAATATT+TGG + chr6_3:4268703-4268722 Msa0934420:three_prime_UTR 30.0%
CTTATTGAAGGACAACTAAT+AGG - chr6_3:4268753-4268772 None:intergenic 30.0%
AATCCCACAAAGAATAATGT+TGG - chr6_3:4268841-4268860 None:intergenic 30.0%
ATAGAGAATTGCATATTTCG+TGG - chr6_3:4268891-4268910 None:intergenic 30.0%
TCTATGCAACGAATTTCAAA+TGG + chr6_3:4268906-4268925 Msa0934420:three_prime_UTR 30.0%
CTATGCAACGAATTTCAAAT+GGG + chr6_3:4268907-4268926 Msa0934420:three_prime_UTR 30.0%
!!! GTTTTAAAAAACTGGTTGGC+TGG - chr6_3:4262400-4262419 None:intergenic 35.0%
GTTAACGTCATCCATTAGTT+TGG - chr6_3:4262423-4262442 None:intergenic 35.0%
GACGTTAACAAAGACAAAAC+TGG + chr6_3:4262434-4262453 Msa0934420:five_prime_UTR 35.0%
! TGTAACCTGCTATGACTTTT+AGG - chr6_3:4262470-4262489 None:intergenic 35.0%
TACTTACTCAGATCTAAGAG+AGG - chr6_3:4262514-4262533 None:intergenic 35.0%
CATCTACTTATGGCTTATCA+TGG + chr6_3:4262609-4262628 Msa0934420:five_prime_UTR 35.0%
!! CTGTGCTTATTTTTCATAGG+AGG + chr6_3:4263493-4263512 Msa0934420:intron 35.0%
TCTAAATCTAATACTCCCTC+CGG + chr6_3:4263698-4263717 Msa0934420:intron 35.0%
AACCAAATAAATACTCCCTC+CGG - chr6_3:4263851-4263870 None:intergenic 35.0%
!! GAGGGAGTATTTATTTGGTT+TGG + chr6_3:4263851-4263870 Msa0934420:intron 35.0%
TAAAAAGAACCAATGCCCTA+AGG + chr6_3:4263961-4263980 Msa0934420:intron 35.0%
AAAAAGAACCAATGCCCTAA+GGG + chr6_3:4263962-4263981 Msa0934420:intron 35.0%
! ATAGAAGACACCTTTTGTGA+AGG + chr6_3:4264176-4264195 Msa0934420:intron 35.0%
AAAGTGAAAATCACACCTTG+AGG + chr6_3:4264287-4264306 Msa0934420:intron 35.0%
! TTTTATCAAGTCACACCTCA+AGG - chr6_3:4264305-4264324 None:intergenic 35.0%
!!! CACCACACTACTTTTTATGA+AGG + chr6_3:4264327-4264346 Msa0934420:intron 35.0%
CACCTTCATAAAAAGTAGTG+TGG - chr6_3:4264332-4264351 None:intergenic 35.0%
GTTGCATTACAATTACGTGT+GGG - chr6_3:4264638-4264657 None:intergenic 35.0%
AGTTGCATTACAATTACGTG+TGG - chr6_3:4264639-4264658 None:intergenic 35.0%
CACTAAGGTTATGGATGAAT+TGG - chr6_3:4264874-4264893 None:intergenic 35.0%
AGCTAACATAACATTGGGTT+AGG + chr6_3:4265000-4265019 Msa0934420:intron 35.0%
TGTGTTGTGTTTGTTCGATA+GGG - chr6_3:4265109-4265128 None:intergenic 35.0%
! GATTAATAACCGGATTTGCT+CGG + chr6_3:4265164-4265183 Msa0934420:CDS 35.0%
! ATTAATAACCGGATTTGCTC+GGG + chr6_3:4265165-4265184 Msa0934420:CDS 35.0%
! GAAGAGAGAGAATTTTATCG+TGG + chr6_3:4265268-4265287 Msa0934420:CDS 35.0%
CAATCTTTCCTTGCAGTTTA+AGG + chr6_3:4265397-4265416 Msa0934420:intron 35.0%
! TTCCTTGCAGTTTAAGGTTT+AGG + chr6_3:4265403-4265422 Msa0934420:intron 35.0%
! TCCTTGCAGTTTAAGGTTTA+GGG + chr6_3:4265404-4265423 Msa0934420:intron 35.0%
GCTACTTATTGTGGTTGATT+TGG - chr6_3:4265543-4265562 None:intergenic 35.0%
AGTGCTTGTTTCAATCACAT+AGG + chr6_3:4265606-4265625 Msa0934420:intron 35.0%
GTGCTTGTTTCAATCACATA+GGG + chr6_3:4265607-4265626 Msa0934420:intron 35.0%
ATCAAGTAGCACTAAACACA+AGG - chr6_3:4265792-4265811 None:intergenic 35.0%
TATATGTTTGGGTCTACCAA+AGG + chr6_3:4265840-4265859 Msa0934420:intron 35.0%
GCTTAATTCTTCAAGAACTC+CGG - chr6_3:4265922-4265941 None:intergenic 35.0%
TTGTCTCTTTACCCTTGTAA+GGG - chr6_3:4266061-4266080 None:intergenic 35.0%
AACGTATATCATTGCGGTAA+CGG - chr6_3:4266195-4266214 None:intergenic 35.0%
GGGATTAACGTATATCATTG+CGG - chr6_3:4266201-4266220 None:intergenic 35.0%
AATATAAGGATGGGATTTGG+AGG + chr6_3:4266234-4266253 Msa0934420:CDS 35.0%
ATACATATGGGAACAAATGG+GGG + chr6_3:4266357-4266376 Msa0934420:CDS 35.0%
! ATGTGGATTGAAAGAGATTG+CGG + chr6_3:4266392-4266411 Msa0934420:CDS 35.0%
GAGGAAATTAACGAACTAGT+AGG + chr6_3:4266587-4266606 Msa0934420:CDS 35.0%
GCCACAACTTCTATTTAGAA+AGG - chr6_3:4266677-4266696 None:intergenic 35.0%
CTAAATTCAGCGTGTACTTT+AGG - chr6_3:4266719-4266738 None:intergenic 35.0%
GAAATCAGCTGCAAAAAAGA+AGG - chr6_3:4266794-4266813 None:intergenic 35.0%
AGCTTAGTGTTACGTGAATT+TGG + chr6_3:4267347-4267366 Msa0934420:intron 35.0%
TGGTTTAAGTCTCAAACACT+TGG + chr6_3:4267533-4267552 Msa0934420:intron 35.0%
TGAGATGGTACAGAATTGAT+TGG - chr6_3:4267627-4267646 None:intergenic 35.0%
CTAAACAATACCAGATGAGA+TGG - chr6_3:4267642-4267661 None:intergenic 35.0%
TGCATATCCAATTCTAACAG+GGG - chr6_3:4268170-4268189 None:intergenic 35.0%
GTGCATATCCAATTCTAACA+GGG - chr6_3:4268171-4268190 None:intergenic 35.0%
TGTGCATATCCAATTCTAAC+AGG - chr6_3:4268172-4268191 None:intergenic 35.0%
TTGAAAGGAAGTTGTAGCAT+TGG + chr6_3:4268377-4268396 Msa0934420:intron 35.0%
TGAAAGGAAGTTGTAGCATT+GGG + chr6_3:4268378-4268397 Msa0934420:intron 35.0%
! TGGCAAATTTGAAGTCAACA+GGG + chr6_3:4268652-4268671 Msa0934420:CDS 35.0%
AGTTCAGAAACGCTTATTGA+AGG - chr6_3:4268765-4268784 None:intergenic 35.0%
AGACAACCTGGTAATAGTAT+TGG - chr6_3:4268802-4268821 None:intergenic 35.0%
CTGTACCTAAAAGTCATAGC+AGG + chr6_3:4262462-4262481 Msa0934420:five_prime_UTR 40.0%
GTTACTGTGCCTATTTCCAT+AGG + chr6_3:4262631-4262650 Msa0934420:five_prime_UTR 40.0%
AACCAAATCGATGATTGGGT+GGG - chr6_3:4262681-4262700 None:intergenic 40.0%
AAACCAAATCGATGATTGGG+TGG - chr6_3:4262682-4262701 None:intergenic 40.0%
GTGTGATGAAGCCTTGAATT+TGG - chr6_3:4263118-4263137 None:intergenic 40.0%
AAGTAGATACACTGCAACGT+TGG - chr6_3:4263456-4263475 None:intergenic 40.0%
CGTTGCAGTGTATCTACTTA+TGG + chr6_3:4263457-4263476 Msa0934420:intron 40.0%
CTCTTATAAATAGGACCGGA+GGG - chr6_3:4263716-4263735 None:intergenic 40.0%
TCTCTTATAAATAGGACCGG+AGG - chr6_3:4263717-4263736 None:intergenic 40.0%
! TCTTTTGTAAATAGGACCGG+AGG + chr6_3:4263832-4263851 Msa0934420:intron 40.0%
! CTTTTGTAAATAGGACCGGA+GGG + chr6_3:4263833-4263852 Msa0934420:intron 40.0%
!!! TTTTGGTTTCCTTAGGGCAA+TGG - chr6_3:4263902-4263921 None:intergenic 40.0%
AAATATTGCCCTTAGGGCAT+TGG - chr6_3:4263973-4263992 None:intergenic 40.0%
GACCGAGACATAATAGAAAC+AGG + chr6_3:4264505-4264524 Msa0934420:five_prime_UTR 40.0%
AATGGCATGAAGCACAATGA+TGG + chr6_3:4264532-4264551 Msa0934420:intron 40.0%
TACGTGTGGGAGATGTAAAA+TGG - chr6_3:4264625-4264644 None:intergenic 40.0%
TTGAACCCTTTATGGGCTTA+TGG - chr6_3:4265043-4265062 None:intergenic 40.0%
CTGTGTTGTGTTTGTTCGAT+AGG - chr6_3:4265110-4265129 None:intergenic 40.0%
GTGAAAATTGGGTTTACGGT+CGG - chr6_3:4265133-4265152 None:intergenic 40.0%
GCGGCTTGAATCATAATTCT+TGG - chr6_3:4265224-4265243 None:intergenic 40.0%
AAGGCTTTCGACAGCATATA+TGG - chr6_3:4265886-4265905 None:intergenic 40.0%
TCTTGAAGAATTAAGCGCTC+AGG + chr6_3:4265926-4265945 Msa0934420:CDS 40.0%
AACGGTAACAAGGGATGTAA+CGG + chr6_3:4265972-4265991 Msa0934420:CDS 40.0%
! TAACGGAGGTTTTCCTCAAA+AGG + chr6_3:4265989-4266008 Msa0934420:CDS 40.0%
CTTGTCTCTTTACCCTTGTA+AGG - chr6_3:4266062-4266081 None:intergenic 40.0%
! AGATGTCGTCTCTCTAAAAG+AGG + chr6_3:4266080-4266099 Msa0934420:CDS 40.0%
! GATGTCGTCTCTCTAAAAGA+GGG + chr6_3:4266081-4266100 Msa0934420:CDS 40.0%
GGGAAGAGAGTTAAAATCAC+TGG + chr6_3:4266101-4266120 Msa0934420:CDS 40.0%
ACTGGTCATGTAAAAGTTCC+TGG + chr6_3:4266119-4266138 Msa0934420:CDS 40.0%
CATGTAAAAGTTCCTGGTCA+TGG + chr6_3:4266125-4266144 Msa0934420:CDS 40.0%
AAAGTTCCTGGTCATGGAAA+CGG + chr6_3:4266131-4266150 Msa0934420:CDS 40.0%
ACGTATATCATTGCGGTAAC+GGG - chr6_3:4266194-4266213 None:intergenic 40.0%
CGAACTCGAACAATTGTTGA+TGG + chr6_3:4266266-4266285 Msa0934420:CDS 40.0%
! AGAGATTGCGGATTACCATA+TGG + chr6_3:4266404-4266423 Msa0934420:CDS 40.0%
! ATTCAGCGTGTACTTTAGGA+GGG - chr6_3:4266715-4266734 None:intergenic 40.0%
AATTCAGCGTGTACTTTAGG+AGG - chr6_3:4266716-4266735 None:intergenic 40.0%
!!! CTTTTTTGCAGCTGATTTCG+AGG + chr6_3:4266795-4266814 Msa0934420:intron 40.0%
ACAGTGTGTGTACGTATGTT+TGG + chr6_3:4267390-4267409 Msa0934420:intron 40.0%
TCAAGCAATGCATTCACTAG+AGG - chr6_3:4267453-4267472 None:intergenic 40.0%
!! CTCAAACACTTGGTTTTTCC+AGG + chr6_3:4267543-4267562 Msa0934420:intron 40.0%
CAATTCTGTACCATCTCATC+TGG + chr6_3:4267629-4267648 Msa0934420:CDS 40.0%
GTAAGATTGCAATAGGAGAG+TGG - chr6_3:4267817-4267836 None:intergenic 40.0%
TATTTACAGGTGGGACCAAA+AGG + chr6_3:4267886-4267905 Msa0934420:intron 40.0%
! TCAGTAGCAACTTCACCTTT+TGG - chr6_3:4267904-4267923 None:intergenic 40.0%
ATCATCAGACAATTGTGGAG+TGG - chr6_3:4267962-4267981 None:intergenic 40.0%
ATTGCTGTCTCTGCATATGA+TGG - chr6_3:4268000-4268019 None:intergenic 40.0%
AAAGCTTCCCCTGTTAGAAT+TGG + chr6_3:4268160-4268179 Msa0934420:intron 40.0%
GAAAGGAAGTTGTAGCATTG+GGG + chr6_3:4268379-4268398 Msa0934420:intron 40.0%
GAAAATGATAGGTCTTCCCT+TGG + chr6_3:4268416-4268435 Msa0934420:intron 40.0%
!!! TTTTTTTTGTAGGGGGTACC+TGG + chr6_3:4268587-4268606 Msa0934420:intron 40.0%
ACAATTACTGATCATCGTGC+TGG + chr6_3:4268632-4268651 Msa0934420:CDS 40.0%
! CTGGCAAATTTGAAGTCAAC+AGG + chr6_3:4268651-4268670 Msa0934420:CDS 40.0%
GACAACTAATAGGCTCAACT+AGG - chr6_3:4268743-4268762 None:intergenic 40.0%
ACTCAGATCTAAGAGAGGAG+CGG - chr6_3:4262509-4262528 None:intergenic 45.0%
CATCTTCTCAATCAACGTGC+AGG + chr6_3:4262584-4262603 Msa0934420:intron 45.0%
ACTGTGCCTATTTCCATAGG+AGG + chr6_3:4262634-4262653 Msa0934420:five_prime_UTR 45.0%
CTGTGCCTATTTCCATAGGA+GGG + chr6_3:4262635-4262654 Msa0934420:five_prime_UTR 45.0%
TGTGCCTATTTCCATAGGAG+GGG + chr6_3:4262636-4262655 Msa0934420:five_prime_UTR 45.0%
ACAACCCCTCCTATGGAAAT+AGG - chr6_3:4262643-4262662 None:intergenic 45.0%
! ATCCCACCCAATCATCGATT+TGG + chr6_3:4262676-4262695 Msa0934420:five_prime_UTR 45.0%
AAATAAATACCTGGGTCGGG+TGG - chr6_3:4262775-4262794 None:intergenic 45.0%
TAGTACTACATACCTGGGTC+GGG - chr6_3:4263639-4263658 None:intergenic 45.0%
CTAGTACTACATACCTGGGT+CGG - chr6_3:4263640-4263659 None:intergenic 45.0%
!! GACCGGAGGGAGTATTTATT+TGG + chr6_3:4263846-4263865 Msa0934420:intron 45.0%
TCTTGCTAACCATTGCCCTA+AGG + chr6_3:4263890-4263909 Msa0934420:intron 45.0%
CGCTGTTGTGTGATTTGACA+TGG + chr6_3:4264847-4264866 Msa0934420:intron 45.0%
TGTGTGCCATAAGCCCATAA+AGG + chr6_3:4265034-4265053 Msa0934420:intron 45.0%
GTGTGCCATAAGCCCATAAA+GGG + chr6_3:4265035-4265054 Msa0934420:intron 45.0%
TTATCGTGGTCGCATTGTTC+AGG + chr6_3:4265282-4265301 Msa0934420:CDS 45.0%
TATCGTGGTCGCATTGTTCA+GGG + chr6_3:4265283-4265302 Msa0934420:CDS 45.0%
TCGCTCCGTTACATATCCTA+GGG + chr6_3:4265348-4265367 Msa0934420:CDS 45.0%
GGCAACCCTAGGATATGTAA+CGG - chr6_3:4265356-4265375 None:intergenic 45.0%
TTACTCACCACATTCGCCTT+GGG - chr6_3:4265377-4265396 None:intergenic 45.0%
GCCCTAAACCTTAAACTGCA+AGG - chr6_3:4265408-4265427 None:intergenic 45.0%
TCAATCACATAGGGCCTGTT+TGG + chr6_3:4265616-4265635 Msa0934420:intron 45.0%
GACAGCATATATGGAAGCCA+GGG - chr6_3:4265877-4265896 None:intergenic 45.0%
! AGCCTTATCCACATCAAGAC+CGG + chr6_3:4265900-4265919 Msa0934420:CDS 45.0%
GAAATCGTGTCTTGTGACAG+AGG + chr6_3:4265948-4265967 Msa0934420:CDS 45.0%
GTGTCTTGTGACAGAGGTAA+CGG + chr6_3:4265954-4265973 Msa0934420:CDS 45.0%
! TGACAGAGGTAACGGTAACA+AGG + chr6_3:4265962-4265981 Msa0934420:CDS 45.0%
! GACAGAGGTAACGGTAACAA+GGG + chr6_3:4265963-4265982 Msa0934420:CDS 45.0%
GTGACGAGAGTCATTTGCTT+CGG + chr6_3:4266153-4266172 Msa0934420:CDS 45.0%
TGACGAGAGTCATTTGCTTC+GGG + chr6_3:4266154-4266173 Msa0934420:CDS 45.0%
TAAGGATGGGATTTGGAGGA+AGG + chr6_3:4266238-4266257 Msa0934420:CDS 45.0%
ATATGGGAACAAATGGGGGA+TGG + chr6_3:4266361-4266380 Msa0934420:CDS 45.0%
TATGGGAACAAATGGGGGAT+GGG + chr6_3:4266362-4266381 Msa0934420:CDS 45.0%
CATCGAGAAGGATTTCGCAA+CGG - chr6_3:4266430-4266449 None:intergenic 45.0%
!! CAGGATAATGAGCATCGAGA+AGG - chr6_3:4266442-4266461 None:intergenic 45.0%
TGCTCATTATCCTGTGCTAG+AGG + chr6_3:4266448-4266467 Msa0934420:CDS 45.0%
AAGAAAGCTACCTCTAGCAC+AGG - chr6_3:4266461-4266480 None:intergenic 45.0%
AAAAAGCTCTTAGGCTGCTC+TGG - chr6_3:4266623-4266642 None:intergenic 45.0%
TGGACACTGAACAGTTTCAG+TGG + chr6_3:4266822-4266841 Msa0934420:CDS 45.0%
CACGTGCTAATATCTATCGC+TGG + chr6_3:4267423-4267442 Msa0934420:intron 45.0%
CGCTTTCCTATTCTCCAAGA+GGG + chr6_3:4267566-4267585 Msa0934420:CDS 45.0%
CTATTCTCCAAGAGGGAAGA+GGG + chr6_3:4267573-4267592 Msa0934420:CDS 45.0%
! TGCGTATAGCTTGCCAGAAA+TGG + chr6_3:4268481-4268500 Msa0934420:intron 45.0%
CAGGGTAAGGAATGGAGAAA+GGG - chr6_3:4268550-4268569 None:intergenic 45.0%
ACAGGGTAAGGAATGGAGAA+AGG - chr6_3:4268551-4268570 None:intergenic 45.0%
!! AAAAATAAAATAAAAAATCA+AGG - chr6_3:4264425-4264444 None:intergenic 5.0%
!! TTATATTTATAAAATTCTTT+GGG - chr6_3:4266221-4266240 None:intergenic 5.0%
!!! CTTTTTTTTTTTTTATTAAA+TGG + chr6_3:4266856-4266875 Msa0934420:intron 5.0%
!! AAAAAAAAAAAAAAAAAACA+GGG - chr6_3:4268568-4268587 None:intergenic 5.0%
!! AAAAAAAAAAAAAAAAAAAC+AGG - chr6_3:4268569-4268588 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTTTGT+AGG + chr6_3:4268577-4268596 Msa0934420:intron 5.0%
!!! TTTTTTTTTTTTTTTTTGTA+GGG + chr6_3:4268578-4268597 Msa0934420:intron 5.0%
CGTGCAGGTGCATCTACTTA+TGG + chr6_3:4262599-4262618 Msa0934420:intron 50.0%
CAGATTGACAACCCCTCCTA+TGG - chr6_3:4262650-4262669 None:intergenic 50.0%
ATCGTGGTCGCATTGTTCAG+GGG + chr6_3:4265284-4265303 Msa0934420:CDS 50.0%
! GATATGTAACGGAGCGAGCA+TGG - chr6_3:4265345-4265364 None:intergenic 50.0%
CTCGCTCCGTTACATATCCT+AGG + chr6_3:4265347-4265366 Msa0934420:CDS 50.0%
ACATATCCTAGGGTTGCCCA+AGG + chr6_3:4265358-4265377 Msa0934420:CDS 50.0%
GTTACTCACCACATTCGCCT+TGG - chr6_3:4265378-4265397 None:intergenic 50.0%
CAGGGCATAGCAACATCCTT+TGG - chr6_3:4265859-4265878 None:intergenic 50.0%
CAAAGGATGTTGCTATGCCC+TGG + chr6_3:4265857-4265876 Msa0934420:intron 50.0%
CGACAGCATATATGGAAGCC+AGG - chr6_3:4265878-4265897 None:intergenic 50.0%
CTCCGGTCTTGATGTGGATA+AGG - chr6_3:4265905-4265924 None:intergenic 50.0%
CAAGAACTCCGGTCTTGATG+TGG - chr6_3:4265911-4265930 None:intergenic 50.0%
GGTAACAAGGGATGTAACGG+AGG + chr6_3:4265975-4265994 Msa0934420:CDS 50.0%
AGGATTTCGCAACGGCCATA+TGG - chr6_3:4266422-4266441 None:intergenic 50.0%
!! TCATTTGCAGGGCACTGAAG+AGG + chr6_3:4266568-4266587 Msa0934420:intron 50.0%
! GCAGCTGATTTCGAGGTTTG+TGG + chr6_3:4266802-4266821 Msa0934420:intron 50.0%
!! TTGGAGAATAGGAAAGCGCC+TGG - chr6_3:4267564-4267583 None:intergenic 50.0%
GCGCTTTCCTATTCTCCAAG+AGG + chr6_3:4267565-4267584 Msa0934420:CDS 50.0%
CCTCTTCCCTCTTGGAGAAT+AGG - chr6_3:4267575-4267594 None:intergenic 50.0%
CCTATTCTCCAAGAGGGAAG+AGG + chr6_3:4267572-4267591 Msa0934420:CDS 50.0%
ATCTTTGCCCTCTTCCCTCT+TGG - chr6_3:4267583-4267602 None:intergenic 50.0%
GAAGTTGCTACTGAGCAACC+TGG + chr6_3:4267910-4267929 Msa0934420:CDS 50.0%
! GAAGTTGTAGCATTGGGGAC+CGG + chr6_3:4268384-4268403 Msa0934420:intron 50.0%
!!! TTTTTGTAGGGGGTACCTGG+AGG + chr6_3:4268590-4268609 Msa0934420:intron 50.0%
! TTTTATACGCCACCCGACCC+AGG + chr6_3:4262763-4262782 Msa0934420:five_prime_UTR 55.0%
! TTTTATACGCCACCCGACCC+AGG + chr6_3:4262763-4262782 Msa0934420:five_prime_UTR 55.0%
TACTACATACCTGGGTCGGG+TGG - chr6_3:4263636-4263655 None:intergenic 55.0%
! AACCGGATTTGCTCGGGTCT+TGG + chr6_3:4265171-4265190 Msa0934420:CDS 55.0%
! ACCGGATTTGCTCGGGTCTT+GGG + chr6_3:4265172-4265191 Msa0934420:CDS 55.0%
ACCCAAGACCCGAGCAAATC+CGG - chr6_3:4265176-4265195 None:intergenic 55.0%
TCGTGGTCGCATTGTTCAGG+GGG + chr6_3:4265285-4265304 Msa0934420:CDS 55.0%
TCGTCACCGTTTCCATGACC+AGG - chr6_3:4266140-4266159 None:intergenic 55.0%
GTGGCAACAGCAGATGCCAT+GGG - chr6_3:4267943-4267962 None:intergenic 55.0%
AGTGGCAACAGCAGATGCCA+TGG - chr6_3:4267944-4267963 None:intergenic 55.0%
AGAAATGGCCACCGTTGCTG+CGG + chr6_3:4268496-4268515 Msa0934420:intron 55.0%
! GGATTTGCTCGGGTCTTGGG+TGG + chr6_3:4265175-4265194 Msa0934420:CDS 60.0%
! CGTCTCTGACTTGCCAGACG+AGG + chr6_3:4265309-4265328 Msa0934420:CDS 60.0%
ACTTGCCAGACGAGGTCGAC+TGG + chr6_3:4265317-4265336 Msa0934420:CDS 60.0%
CATTCGCCTTGGGCAACCCT+AGG - chr6_3:4265367-4265386 None:intergenic 60.0%
AGGGTTGCCCAAGGCGAATG+TGG + chr6_3:4265367-4265386 Msa0934420:CDS 60.0%
GCAACCTGGCAAGAGTCCCA+TGG + chr6_3:4267924-4267943 Msa0934420:CDS 60.0%
GATGCCATGGGACTCTTGCC+AGG - chr6_3:4267931-4267950 None:intergenic 60.0%
GCAGCAACGGTGGCCATTTC+TGG - chr6_3:4268497-4268516 None:intergenic 60.0%
!! TTGTAGGGGGTACCTGGAGG+TGG + chr6_3:4268593-4268612 Msa0934420:intron 60.0%
GATGCATCCTGACCACCTCC+AGG - chr6_3:4268608-4268627 None:intergenic 60.0%
! TGGTGCCAGTCGACCTCGTC+TGG - chr6_3:4265325-4265344 None:intergenic 65.0%
!! ACTGGTGGTGGCCGCAGCAA+CGG - chr6_3:4268510-4268529 None:intergenic 65.0%
!! GGGGGTACCTGGAGGTGGTC+AGG + chr6_3:4268598-4268617 Msa0934420:intron 70.0%
! GGTGGTGGCCGCAGCAACGG+TGG - chr6_3:4268507-4268526 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 4262387 4268976 4262387 ID=Msa0934420;Name=Msa0934420
chr6_3 mRNA 4262387 4268976 4262387 ID=Msa0934420-mRNA-1;Parent=Msa0934420;Name=Msa0934420-mRNA-1;_AED=0.28;_eAED=0.28;_QI=532|1|1|1|0.63|0.58|12|291|434
chr6_3 exon 4262387 4262526 4262387 ID=Msa0934420-mRNA-1:exon:1309;Parent=Msa0934420-mRNA-1
chr6_3 exon 4262606 4262784 4262606 ID=Msa0934420-mRNA-1:exon:1310;Parent=Msa0934420-mRNA-1
chr6_3 exon 4263512 4263645 4263512 ID=Msa0934420-mRNA-1:exon:1311;Parent=Msa0934420-mRNA-1
chr6_3 exon 4264450 4264526 4264450 ID=Msa0934420-mRNA-1:exon:1312;Parent=Msa0934420-mRNA-1
chr6_3 exon 4265155 4265388 4265155 ID=Msa0934420-mRNA-1:exon:1313;Parent=Msa0934420-mRNA-1
chr6_3 exon 4265862 4266469 4265862 ID=Msa0934420-mRNA-1:exon:1314;Parent=Msa0934420-mRNA-1
chr6_3 exon 4266578 4266658 4266578 ID=Msa0934420-mRNA-1:exon:1315;Parent=Msa0934420-mRNA-1
chr6_3 exon 4266806 4266843 4266806 ID=Msa0934420-mRNA-1:exon:1316;Parent=Msa0934420-mRNA-1
chr6_3 exon 4266959 4266981 4266959 ID=Msa0934420-mRNA-1:exon:1317;Parent=Msa0934420-mRNA-1
chr6_3 exon 4267565 4267650 4267565 ID=Msa0934420-mRNA-1:exon:1318;Parent=Msa0934420-mRNA-1
chr6_3 exon 4267895 4268044 4267895 ID=Msa0934420-mRNA-1:exon:1319;Parent=Msa0934420-mRNA-1
chr6_3 exon 4268599 4268976 4268599 ID=Msa0934420-mRNA-1:exon:1320;Parent=Msa0934420-mRNA-1
chr6_3 five_prime_UTR 4262387 4262526 4262387 ID=Msa0934420-mRNA-1:five_prime_utr;Parent=Msa0934420-mRNA-1
chr6_3 five_prime_UTR 4262606 4262784 4262606 ID=Msa0934420-mRNA-1:five_prime_utr;Parent=Msa0934420-mRNA-1
chr6_3 five_prime_UTR 4263512 4263645 4263512 ID=Msa0934420-mRNA-1:five_prime_utr;Parent=Msa0934420-mRNA-1
chr6_3 five_prime_UTR 4264450 4264526 4264450 ID=Msa0934420-mRNA-1:five_prime_utr;Parent=Msa0934420-mRNA-1
chr6_3 five_prime_UTR 4265155 4265156 4265155 ID=Msa0934420-mRNA-1:five_prime_utr;Parent=Msa0934420-mRNA-1
chr6_3 CDS 4265157 4265388 4265157 ID=Msa0934420-mRNA-1:cds;Parent=Msa0934420-mRNA-1
chr6_3 CDS 4265862 4266469 4265862 ID=Msa0934420-mRNA-1:cds;Parent=Msa0934420-mRNA-1
chr6_3 CDS 4266578 4266658 4266578 ID=Msa0934420-mRNA-1:cds;Parent=Msa0934420-mRNA-1
chr6_3 CDS 4266806 4266843 4266806 ID=Msa0934420-mRNA-1:cds;Parent=Msa0934420-mRNA-1
chr6_3 CDS 4266959 4266981 4266959 ID=Msa0934420-mRNA-1:cds;Parent=Msa0934420-mRNA-1
chr6_3 CDS 4267565 4267650 4267565 ID=Msa0934420-mRNA-1:cds;Parent=Msa0934420-mRNA-1
chr6_3 CDS 4267895 4268044 4267895 ID=Msa0934420-mRNA-1:cds;Parent=Msa0934420-mRNA-1
chr6_3 CDS 4268599 4268685 4268599 ID=Msa0934420-mRNA-1:cds;Parent=Msa0934420-mRNA-1
chr6_3 three_prime_UTR 4268686 4268976 4268686 ID=Msa0934420-mRNA-1:three_prime_utr;Parent=Msa0934420-mRNA-1
Gene Sequence

>Msa0934420

ATGAATCGATTAATAACCGGATTTGCTCGGGTCTTGGGTGGATTTTCTCTTATTCATTCTTCTTCCAAGAATTATGATTCAAGCCGCAAATTTTTGTTTAAATCAGACGAAGAAGAGAGAGAATTTTATCGTGGTCGCATTGTTCAGGGGGACGTCTCTGACTTGCCAGACGAGGTCGACTGGCACCATGCTCGCTCCGTTACATATCCTAGGGTTGCCCAAGGCGAATGTGGATGTTGCTATGCCCTGGCTTCCATATATGCTGTCGAAAGCCTTATCCACATCAAGACCGGAGTTCTTGAAGAATTAAGCGCTCAGGAAATCGTGTCTTGTGACAGAGGTAACGGTAACAAGGGATGTAACGGAGGTTTTCCTCAAAAGGTATTTGAATACATAAAGAGGAACGGGATTTCTCTTGAAAAAGATTTCCCTTACAAGGGTAAAGAGACAAGATGTCGTCTCTCTAAAAGAGGGAAGAGAGTTAAAATCACTGGTCATGTAAAAGTTCCTGGTCATGGAAACGGTGACGAGAGTCATTTGCTTCGGGCTGTTGCAAAACAGCCCGTTACCGCAATGATATACGTTAATCCCAAAGAATTTTATAAATATAAGGATGGGATTTGGAGGAAGGAATATCGAACTCGAACAATTGTTGATGGTGCATTGCATAATGTTTGCATTGTTGGATACCATACTATTGACACAATTAAGTTTTGGAAAATTAAGAATACATATGGGAACAAATGGGGGATGGGAGGTTTTATGTGGATTGAAAGAGATTGCGGATTACCATATGGCCGTTGCGAAATCCTTCTCGATGCTCATTATCCTGTGCTAGAGGGCACTGAAGAGGAAATTAACGAACTAGTAGGTAACACAAAACCAGAGCAGCCTAAGAGCTTTTTGAATAGATTTATACCGCTGATTTCGAGGTTTGTGGACACTGAACAGTTTCAGTGGTTTAATGATTTGAAAGAAATCGGCGCTTTCCTATTCTCCAAGAGGGAAGAGGGCAAAGATGATACTACTAGATGCAGTCAACCAATCAATTCTGTACCATCTCATCTGGTGGGACCAAAAGGTGAAGTTGCTACTGAGCAACCTGGCAAGAGTCCCATGGCATCTGCTGTTGCCACTCCACAATTGTCTGATGATGATATTGGCATATCACCATCATATGCAGAGACAGCAATCAATAAGAATAGAAAGATGGCAGACGGGGTACCTGGAGGTGGTCAGGATGCATCAGTTACAATTACTGATCATCGTGCTGGCAAATTTGAAGTCAACAGGGAAGATTGCTAG
Protein sequence

>Msa0934420

MNRLITGFARVLGGFSLIHSSSKNYDSSRKFLFKSDEEEREFYRGRIVQGDVSDLPDEVDWHHARSVTYPRVAQGECGCCYALASIYAVESLIHIKTGVLEELSAQEIVSCDRGNGNKGCNGGFPQKVFEYIKRNGISLEKDFPYKGKETRCRLSKRGKRVKITGHVKVPGHGNGDESHLLRAVAKQPVTAMIYVNPKEFYKYKDGIWRKEYRTRTIVDGALHNVCIVGYHTIDTIKFWKIKNTYGNKWGMGGFMWIERDCGLPYGRCEILLDAHYPVLEGTEEEINELVGNTKPEQPKSFLNRFIPLISRFVDTEQFQWFNDLKEIGAFLFSKREEGKDDTTRCSQPINSVPSHLVGPKGEVATEQPGKSPMASAVATPQLSDDDIGISPSYAETAINKNRKMADGVPGGGQDASVTITDHRAGKFEVNREDC*