Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0935010 | Msa0935050 | 0.839582 | 1.453532e-57 | -8.615850e-47 |
| Msa0935020 | Msa0935050 | 0.865714 | 4.833015e-65 | -8.615850e-47 |
| Msa0935040 | Msa0935050 | 0.838731 | 2.415613e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 69 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAACCTTATCCTAGTTAT+TGG | 0.164931 | 6_3:+5350085 | Msa0935050:three_prime_UTR |
| AGTACTCTTGTTGTGTATTC+AGG | 0.221148 | 6_3:+5350150 | Msa0935050:three_prime_UTR |
| AAGTTTAATGCTTGCTCTTT+TGG | 0.224634 | 6_3:+5349800 | Msa0935050:CDS |
| GTTAAGCCCCTTCTATTATT+AGG | 0.239524 | 6_3:+5349962 | Msa0935050:CDS |
| GGGGCTTAACCAAGCAAATA+AGG | 0.260782 | 6_3:-5349949 | None:intergenic |
| CCTTCTTCAAACGATTGATT+TGG | 0.269274 | 6_3:-5347632 | None:intergenic |
| ATTTATGAATTGTAGTTCTA+AGG | 0.288582 | 6_3:+5350196 | Msa0935050:three_prime_UTR |
| CAGGTCACTATGTCTCTTTC+CGG | 0.315834 | 6_3:+5347856 | Msa0935050:intron |
| CTTCTTCAAACGATTGATTT+GGG | 0.329224 | 6_3:-5347631 | None:intergenic |
| TCATCCCTTCATTTATTTCC+AGG | 0.333905 | 6_3:-5349863 | None:intergenic |
| TCGACACAAAATAAAGCAAT+AGG | 0.336301 | 6_3:-5350021 | None:intergenic |
| CTAGTTATTGGTATCTTTGT+TGG | 0.341847 | 6_3:+5350097 | Msa0935050:three_prime_UTR |
| CAATAGGGAGAAAAGCTTAA+AGG | 0.344849 | 6_3:-5350005 | None:intergenic |
| GTTGGTGACCTAATAATAGA+AGG | 0.392561 | 6_3:-5349970 | None:intergenic |
| AGTATGTCCCCTTATTTGCT+TGG | 0.415078 | 6_3:+5349940 | Msa0935050:CDS |
| CGAAGCCTTGCTTCTGAGGT+TGG | 0.419465 | 6_3:+5349368 | Msa0935050:CDS |
| CGTTTGAAGAAGGTCGGAAA+AGG | 0.424466 | 6_3:+5347642 | Msa0935050:five_prime_UTR |
| GAAGATCCGCCGAGCAAGAC+CGG | 0.434552 | 6_3:-5347875 | None:intergenic |
| CGACTGCGAGAGGTGGTGCC+TGG | 0.441779 | 6_3:+5349845 | Msa0935050:CDS |
| TTTCTCGACACTCCGCAATC+AGG | 0.446937 | 6_3:+5349298 | Msa0935050:CDS |
| GGGCTTAACCAAGCAAATAA+GGG | 0.452029 | 6_3:-5349948 | None:intergenic |
| GTGAGTTCAAAGATTTGAAA+AGG | 0.453532 | 6_3:+5349907 | Msa0935050:CDS |
| CCAAATCAATCGTTTGAAGA+AGG | 0.458072 | 6_3:+5347632 | Msa0935050:five_prime_UTR |
| TCCAACAAGCTTGGAGGAGG+GGG | 0.460431 | 6_3:+5347940 | Msa0935050:CDS |
| TCAACGAAGCCTTGCTTCTG+AGG | 0.475701 | 6_3:+5349364 | Msa0935050:CDS |
| ATGAAATACCTGTGATTGTT+GGG | 0.477825 | 6_3:-5347971 | None:intergenic |
| CGACACAAAATAAAGCAATA+GGG | 0.497214 | 6_3:-5350020 | None:intergenic |
| AGGAGGGGCCCAACAATCAC+AGG | 0.499979 | 6_3:+5347963 | Msa0935050:CDS |
| TATTAGGTCACCAACACAAA+AGG | 0.501634 | 6_3:+5349978 | Msa0935050:exon |
| CAACAAAGATACCAATAACT+AGG | 0.510035 | 6_3:-5350096 | None:intergenic |
| CAATCCAACAAGCTTGGAGG+AGG | 0.510329 | 6_3:+5347937 | Msa0935050:CDS |
| AAAAGGGTCGTGAATCCAAC+CGG | 0.519654 | 6_3:+5347659 | Msa0935050:five_prime_UTR |
| TATGTTATACTAGCTCGGTT+CGG | 0.522294 | 6_3:-5347531 | None:intergenic |
| AATGTTATGTTATACTAGCT+CGG | 0.523743 | 6_3:-5347536 | None:intergenic |
| TTGCATCAATCCAACAAGCT+TGG | 0.523889 | 6_3:+5347931 | Msa0935050:CDS |
| AGCCTTGCTTCTGAGGTTGG+AGG | 0.524435 | 6_3:+5349371 | Msa0935050:CDS |
| AGATACCAATAACTAGGATA+AGG | 0.525253 | 6_3:-5350090 | None:intergenic |
| TCTGAGGTTGGAGGAAAGAA+AGG | 0.527137 | 6_3:+5349380 | Msa0935050:CDS |
| TTCCTCCAACCTCAGAAGCA+AGG | 0.529658 | 6_3:-5349373 | None:intergenic |
| AATGAAATACCTGTGATTGT+TGG | 0.532174 | 6_3:-5347972 | None:intergenic |
| ATTATTGTTATTTCTGACAC+AGG | 0.533223 | 6_3:+5347585 | Msa0935050:five_prime_UTR |
| TGTCTCTTTCCGGTCTTGCT+CGG | 0.537525 | 6_3:+5347866 | Msa0935050:CDS |
| ATCCAACAAGCTTGGAGGAG+GGG | 0.542492 | 6_3:+5347939 | Msa0935050:CDS |
| ATCAATCGTTTGAAGAAGGT+CGG | 0.543534 | 6_3:+5347636 | Msa0935050:five_prime_UTR |
| GAGTGTCGAGAAAGCAAGGC+GGG | 0.547483 | 6_3:-5349288 | None:intergenic |
| GTTTGAAGAAGGTCGGAAAA+GGG | 0.549628 | 6_3:+5347643 | Msa0935050:five_prime_UTR |
| CATCAATCCAACAAGCTTGG+AGG | 0.550773 | 6_3:+5347934 | Msa0935050:CDS |
| AGCTTGTTGGATTGATGCAA+TGG | 0.556706 | 6_3:-5347928 | None:intergenic |
| TGGTGCCTGGAAATAAATGA+AGG | 0.556836 | 6_3:+5349858 | Msa0935050:CDS |
| TGCGGAGTGTCGAGAAAGCA+AGG | 0.559510 | 6_3:-5349292 | None:intergenic |
| CTCGACACTCCGCAATCAGG+AGG | 0.571894 | 6_3:+5349301 | Msa0935050:CDS |
| CACTCCGCAATCAGGAGGGA+GGG | 0.576678 | 6_3:+5349306 | Msa0935050:CDS |
| CTCTTTCCGGTCTTGCTCGG+CGG | 0.579534 | 6_3:+5347869 | Msa0935050:CDS |
| TTGGTGACCTAATAATAGAA+GGG | 0.581361 | 6_3:-5349969 | None:intergenic |
| ACATCGAATTCGACTGCGAG+AGG | 0.581778 | 6_3:+5349835 | Msa0935050:CDS |
| CAAGGCGGGATTTGAGAAGG+TGG | 0.592172 | 6_3:-5349274 | None:intergenic |
| TCGAATTCGACTGCGAGAGG+TGG | 0.593058 | 6_3:+5349838 | Msa0935050:CDS |
| AAGCAAGGCGGGATTTGAGA+AGG | 0.599539 | 6_3:-5349277 | None:intergenic |
| AGATCCCTCCCTCCTGATTG+CGG | 0.600157 | 6_3:-5349310 | None:intergenic |
| AATCCAACAAGCTTGGAGGA+GGG | 0.600201 | 6_3:+5347938 | Msa0935050:CDS |
| ATGCAATGGAGTTGCTCTGT+AGG | 0.608336 | 6_3:-5347914 | None:intergenic |
| GGCTTAACCAAGCAAATAAG+GGG | 0.608952 | 6_3:-5349947 | None:intergenic |
| ATTAAACTTGACGCGCACAA+AGG | 0.618175 | 6_3:-5349786 | None:intergenic |
| ACACTCCGCAATCAGGAGGG+AGG | 0.636951 | 6_3:+5349305 | Msa0935050:CDS |
| AAGGCGGGATTTGAGAAGGT+GGG | 0.642323 | 6_3:-5349273 | None:intergenic |
| TCGACACTCCGCAATCAGGA+GGG | 0.647659 | 6_3:+5349302 | Msa0935050:CDS |
| TGGTGACCTAATAATAGAAG+GGG | 0.648931 | 6_3:-5349968 | None:intergenic |
| GGTGCCTGGAAATAAATGAA+GGG | 0.720434 | 6_3:+5349859 | Msa0935050:CDS |
| GGAGTGTCGAGAAAGCAAGG+CGG | 0.791149 | 6_3:-5349289 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTGATAATAAAGTATT+AGG | + | chr6_3:5347735-5347754 | Msa0935050:intron | 10.0% |
| !!! | TAATTGATAATAAAGTATTA+GGG | + | chr6_3:5347736-5347755 | Msa0935050:intron | 10.0% |
| !! | ATAAATTAATATATATGTAG+CGG | - | chr6_3:5348171-5348190 | None:intergenic | 10.0% |
| !! | ATATTAATTTATTTATAGAC+TGG | + | chr6_3:5348179-5348198 | Msa0935050:intron | 10.0% |
| !! | TATCAATTAAATCAAATCAA+AGG | - | chr6_3:5347725-5347744 | None:intergenic | 15.0% |
| !!! | AAGAAAAAACAATTTTATGT+AGG | + | chr6_3:5348528-5348547 | Msa0935050:intron | 15.0% |
| !!! | TCCTATATTTTTTACACTAA+CGG | - | chr6_3:5348140-5348159 | None:intergenic | 20.0% |
| !! | TATAAGTGTTATATATGTGT+CGG | + | chr6_3:5348479-5348498 | Msa0935050:intron | 20.0% |
| !!! | ATTTATGAATTGTAGTTCTA+AGG | + | chr6_3:5350196-5350215 | Msa0935050:three_prime_UTR | 20.0% |
| ! | AATGTTATGTTATACTAGCT+CGG | - | chr6_3:5347539-5347558 | None:intergenic | 25.0% |
| !!! | ATTATTGTTATTTCTGACAC+AGG | + | chr6_3:5347585-5347604 | Msa0935050:five_prime_UTR | 25.0% |
| ! | CTGATTGAATTGAATTGAAT+TGG | + | chr6_3:5347765-5347784 | Msa0935050:intron | 25.0% |
| ! | GATAGTTTGAACATACTTAT+TGG | + | chr6_3:5347816-5347835 | Msa0935050:intron | 25.0% |
| ! | CTTACATAATTGGAATAACT+GGG | - | chr6_3:5348031-5348050 | None:intergenic | 25.0% |
| ! | TCTTACATAATTGGAATAAC+TGG | - | chr6_3:5348032-5348051 | None:intergenic | 25.0% |
| ! | AGTTATTCCAATTATGTAAG+AGG | + | chr6_3:5348031-5348050 | Msa0935050:intron | 25.0% |
| ! | TATCTATCCTCTTACATAAT+TGG | - | chr6_3:5348041-5348060 | None:intergenic | 25.0% |
| ! | TAAGAGGATAGATAGATTAA+TGG | + | chr6_3:5348047-5348066 | Msa0935050:intron | 25.0% |
| ! | ACCGTTAGTGTAAAAAATAT+AGG | + | chr6_3:5348136-5348155 | Msa0935050:intron | 25.0% |
| ! | TTGAGAAATGTTGATCAATT+GGG | - | chr6_3:5348370-5348389 | None:intergenic | 25.0% |
| ! | TTTGAGAAATGTTGATCAAT+TGG | - | chr6_3:5348371-5348390 | None:intergenic | 25.0% |
| ! | ATATGTAACTCTTGTATCTA+AGG | + | chr6_3:5348393-5348412 | Msa0935050:intron | 25.0% |
| ! | ATAAAAAAGAAGTAAATCCC+TGG | - | chr6_3:5348925-5348944 | None:intergenic | 25.0% |
| !! | AAACCAAAAAAGTACAAGTT+GGG | - | chr6_3:5348969-5348988 | None:intergenic | 25.0% |
| !! | AAAACCAAAAAAGTACAAGT+TGG | - | chr6_3:5348970-5348989 | None:intergenic | 25.0% |
| ! | ATTAACCTTATCCTAGTTAT+TGG | + | chr6_3:5350085-5350104 | Msa0935050:three_prime_UTR | 25.0% |
| ! | CTTCTTCAAACGATTGATTT+GGG | - | chr6_3:5347634-5347653 | None:intergenic | 30.0% |
| TTGAATTGAATTGGAAGTTG+TGG | + | chr6_3:5347774-5347793 | Msa0935050:intron | 30.0% | |
| ATGAAATACCTGTGATTGTT+GGG | - | chr6_3:5347974-5347993 | None:intergenic | 30.0% | |
| AATGAAATACCTGTGATTGT+TGG | - | chr6_3:5347975-5347994 | None:intergenic | 30.0% | |
| !!! | CTGACTTTTGTTTTTCTTAG+AGG | + | chr6_3:5348820-5348839 | Msa0935050:intron | 30.0% |
| AAATCCCTGGAGTTAATTAA+TGG | - | chr6_3:5348912-5348931 | None:intergenic | 30.0% | |
| GGGTCATAACATTAAAGAAA+TGG | - | chr6_3:5349207-5349226 | None:intergenic | 30.0% | |
| TAATGTTATGACCCAAATTG+TGG | + | chr6_3:5349213-5349232 | Msa0935050:intron | 30.0% | |
| AGAAAGAAAACACGTACATT+GGG | - | chr6_3:5349416-5349435 | None:intergenic | 30.0% | |
| AAGAAAGAAAACACGTACAT+TGG | - | chr6_3:5349417-5349436 | None:intergenic | 30.0% | |
| ! | TGTACGTGTTTTCTTTCTTT+AGG | + | chr6_3:5349418-5349437 | Msa0935050:intron | 30.0% |
| ! | GTACGTGTTTTCTTTCTTTA+GGG | + | chr6_3:5349419-5349438 | Msa0935050:intron | 30.0% |
| !! | TTTCTTTAGGGTTTGTGTTT+AGG | + | chr6_3:5349431-5349450 | Msa0935050:intron | 30.0% |
| CTGCTCATAAACAGAATAAA+AGG | - | chr6_3:5349483-5349502 | None:intergenic | 30.0% | |
| TTTATTCTGTTTATGAGCAG+TGG | + | chr6_3:5349483-5349502 | Msa0935050:intron | 30.0% | |
| TAAAATCCACAATGCTATAG+CGG | - | chr6_3:5349525-5349544 | None:intergenic | 30.0% | |
| ! | AAGTTTAATGCTTGCTCTTT+TGG | + | chr6_3:5349800-5349819 | Msa0935050:CDS | 30.0% |
| GTGAGTTCAAAGATTTGAAA+AGG | + | chr6_3:5349907-5349926 | Msa0935050:CDS | 30.0% | |
| ! | TTGGTGACCTAATAATAGAA+GGG | - | chr6_3:5349972-5349991 | None:intergenic | 30.0% |
| ! | TAAAGGATTTCCTTTTGTGT+TGG | - | chr6_3:5349991-5350010 | None:intergenic | 30.0% |
| CGACACAAAATAAAGCAATA+GGG | - | chr6_3:5350023-5350042 | None:intergenic | 30.0% | |
| TCGACACAAAATAAAGCAAT+AGG | - | chr6_3:5350024-5350043 | None:intergenic | 30.0% | |
| AGATACCAATAACTAGGATA+AGG | - | chr6_3:5350093-5350112 | None:intergenic | 30.0% | |
| CAACAAAGATACCAATAACT+AGG | - | chr6_3:5350099-5350118 | None:intergenic | 30.0% | |
| CTAGTTATTGGTATCTTTGT+TGG | + | chr6_3:5350097-5350116 | Msa0935050:three_prime_UTR | 30.0% | |
| CCTTCTTCAAACGATTGATT+TGG | - | chr6_3:5347635-5347654 | None:intergenic | 35.0% | |
| CCAAATCAATCGTTTGAAGA+AGG | + | chr6_3:5347632-5347651 | Msa0935050:five_prime_UTR | 35.0% | |
| ATCAATCGTTTGAAGAAGGT+CGG | + | chr6_3:5347636-5347655 | Msa0935050:five_prime_UTR | 35.0% | |
| CTCATTCTCAATTCTTTGCT+TGG | + | chr6_3:5347995-5348014 | Msa0935050:intron | 35.0% | |
| AGAAATGTTGATCAATTGGG+AGG | - | chr6_3:5348367-5348386 | None:intergenic | 35.0% | |
| ACTCTTGTATCTAAGGAATG+TGG | + | chr6_3:5348400-5348419 | Msa0935050:intron | 35.0% | |
| TAATTCGACACTCTTAAGAC+CGG | - | chr6_3:5348508-5348527 | None:intergenic | 35.0% | |
| GACTATTTGTGTATGAAGCA+CGG | - | chr6_3:5348610-5348629 | None:intergenic | 35.0% | |
| CAATCAGAGAATGACTATTG+TGG | - | chr6_3:5348643-5348662 | None:intergenic | 35.0% | |
| !!! | TCACCCAACTTGTACTTTTT+TGG | + | chr6_3:5348963-5348982 | Msa0935050:intron | 35.0% |
| GGAGCTTCAATTATCTAGTT+AGG | + | chr6_3:5349452-5349471 | Msa0935050:intron | 35.0% | |
| TGTTTATGAGCAGTGGATAT+AGG | + | chr6_3:5349490-5349509 | Msa0935050:intron | 35.0% | |
| GTTTATGAGCAGTGGATATA+GGG | + | chr6_3:5349491-5349510 | Msa0935050:intron | 35.0% | |
| TTTATGAGCAGTGGATATAG+GGG | + | chr6_3:5349492-5349511 | Msa0935050:intron | 35.0% | |
| TAATGTATCGCAGAACATAG+CGG | - | chr6_3:5349554-5349573 | None:intergenic | 35.0% | |
| TAAAATTCCGCTACGCAATA+GGG | - | chr6_3:5349622-5349641 | None:intergenic | 35.0% | |
| TTAAAATTCCGCTACGCAAT+AGG | - | chr6_3:5349623-5349642 | None:intergenic | 35.0% | |
| ATGAGTGAGCTTCAATTATC+TGG | + | chr6_3:5349668-5349687 | Msa0935050:intron | 35.0% | |
| TCATCCCTTCATTTATTTCC+AGG | - | chr6_3:5349866-5349885 | None:intergenic | 35.0% | |
| GTTAAGCCCCTTCTATTATT+AGG | + | chr6_3:5349962-5349981 | Msa0935050:CDS | 35.0% | |
| TGGTGACCTAATAATAGAAG+GGG | - | chr6_3:5349971-5349990 | None:intergenic | 35.0% | |
| !! | GTTGGTGACCTAATAATAGA+AGG | - | chr6_3:5349973-5349992 | None:intergenic | 35.0% |
| TATTAGGTCACCAACACAAA+AGG | + | chr6_3:5349978-5349997 | Msa0935050:exon | 35.0% | |
| CAATAGGGAGAAAAGCTTAA+AGG | - | chr6_3:5350008-5350027 | None:intergenic | 35.0% | |
| ! | AGTACTCTTGTTGTGTATTC+AGG | + | chr6_3:5350150-5350169 | Msa0935050:three_prime_UTR | 35.0% |
| !! | GTATTCAGGTATTGCTTTTG+TGG | + | chr6_3:5350164-5350183 | Msa0935050:three_prime_UTR | 35.0% |
| GTTTGAAGAAGGTCGGAAAA+GGG | + | chr6_3:5347643-5347662 | Msa0935050:five_prime_UTR | 40.0% | |
| ! | CGAATCGAATCGAGTTTTAC+CGG | - | chr6_3:5347681-5347700 | None:intergenic | 40.0% |
| !! | AGCTTGTTGGATTGATGCAA+TGG | - | chr6_3:5347931-5347950 | None:intergenic | 40.0% |
| TTGCATCAATCCAACAAGCT+TGG | + | chr6_3:5347931-5347950 | Msa0935050:CDS | 40.0% | |
| TGGCAAATAGCTATGAAGCA+TGG | + | chr6_3:5348067-5348086 | Msa0935050:intron | 40.0% | |
| AACACTTATACAAGCCGTGT+CGG | - | chr6_3:5348469-5348488 | None:intergenic | 40.0% | |
| GTTATATATGTGTCGGACAC+CGG | + | chr6_3:5348486-5348505 | Msa0935050:intron | 40.0% | |
| TCGTGTCGGACAACTAAAAT+TGG | - | chr6_3:5348557-5348576 | None:intergenic | 40.0% | |
| AGAATGACTATTGTGGCTAC+TGG | - | chr6_3:5348636-5348655 | None:intergenic | 40.0% | |
| ACACGCCATTAATTAACTCC+AGG | + | chr6_3:5348904-5348923 | Msa0935050:intron | 40.0% | |
| CACGCCATTAATTAACTCCA+GGG | + | chr6_3:5348905-5348924 | Msa0935050:intron | 40.0% | |
| ! | CTGAGCTTTGGTTATCTCAT+TGG | + | chr6_3:5349178-5349197 | Msa0935050:intron | 40.0% |
| TTATGACCCAAATTGTGGTG+TGG | + | chr6_3:5349218-5349237 | Msa0935050:intron | 40.0% | |
| ATCCAACCACACCACAATTT+GGG | - | chr6_3:5349227-5349246 | None:intergenic | 40.0% | |
| AATCCAACCACACCACAATT+TGG | - | chr6_3:5349228-5349247 | None:intergenic | 40.0% | |
| TCGTCAAATAGCAGCTATAG+CGG | + | chr6_3:5349588-5349607 | Msa0935050:intron | 40.0% | |
| TGAGCTTCAATTATCTGGTC+TGG | + | chr6_3:5349673-5349692 | Msa0935050:intron | 40.0% | |
| ATATTGCATCGCTGTATGAC+TGG | - | chr6_3:5349734-5349753 | None:intergenic | 40.0% | |
| ATTAAACTTGACGCGCACAA+AGG | - | chr6_3:5349789-5349808 | None:intergenic | 40.0% | |
| TGGTGCCTGGAAATAAATGA+AGG | + | chr6_3:5349858-5349877 | Msa0935050:CDS | 40.0% | |
| GGTGCCTGGAAATAAATGAA+GGG | + | chr6_3:5349859-5349878 | Msa0935050:CDS | 40.0% | |
| ! | AGTATGTCCCCTTATTTGCT+TGG | + | chr6_3:5349940-5349959 | Msa0935050:CDS | 40.0% |
| GGCTTAACCAAGCAAATAAG+GGG | - | chr6_3:5349950-5349969 | None:intergenic | 40.0% | |
| GGGCTTAACCAAGCAAATAA+GGG | - | chr6_3:5349951-5349970 | None:intergenic | 40.0% | |
| CGTTTGAAGAAGGTCGGAAA+AGG | + | chr6_3:5347642-5347661 | Msa0935050:five_prime_UTR | 45.0% | |
| AAAAGGGTCGTGAATCCAAC+CGG | + | chr6_3:5347659-5347678 | Msa0935050:five_prime_UTR | 45.0% | |
| ! | TCGAATCGAGTTTTACCGGT+TGG | - | chr6_3:5347677-5347696 | None:intergenic | 45.0% |
| !!! | GGTTTTGATTCACCTACAGC+AGG | + | chr6_3:5347837-5347856 | Msa0935050:intron | 45.0% |
| CAGGTCACTATGTCTCTTTC+CGG | + | chr6_3:5347856-5347875 | Msa0935050:intron | 45.0% | |
| ATGCAATGGAGTTGCTCTGT+AGG | - | chr6_3:5347917-5347936 | None:intergenic | 45.0% | |
| CATCAATCCAACAAGCTTGG+AGG | + | chr6_3:5347934-5347953 | Msa0935050:CDS | 45.0% | |
| AATCCAACAAGCTTGGAGGA+GGG | + | chr6_3:5347938-5347957 | Msa0935050:CDS | 45.0% | |
| GTCATGTCATGTGTACGTGT+CGG | - | chr6_3:5348096-5348115 | None:intergenic | 45.0% | |
| CACATGACATGACACTGACA+CGG | + | chr6_3:5348103-5348122 | Msa0935050:intron | 45.0% | |
| AAAGAGACATAGTGACCTGC+AGG | - | chr6_3:5347855-5347874 | None:intergenic | 45.0% | |
| ! | TCTGAGGTTGGAGGAAAGAA+AGG | + | chr6_3:5349380-5349399 | Msa0935050:CDS | 45.0% |
| GGGGCTTAACCAAGCAAATA+AGG | - | chr6_3:5349952-5349971 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTTTTTTTTTGT+AGG | - | chr6_3:5347566-5347585 | None:intergenic | 5.0% |
| GAGACATAGTGACCTGCTGT+AGG | - | chr6_3:5347852-5347871 | None:intergenic | 50.0% | |
| TGTCTCTTTCCGGTCTTGCT+CGG | + | chr6_3:5347866-5347885 | Msa0935050:CDS | 50.0% | |
| CAATCCAACAAGCTTGGAGG+AGG | + | chr6_3:5347937-5347956 | Msa0935050:CDS | 50.0% | |
| ATCCAACAAGCTTGGAGGAG+GGG | + | chr6_3:5347939-5347958 | Msa0935050:CDS | 50.0% | |
| TTCGTCTCAGTTCTCCGACA+CGG | + | chr6_3:5348452-5348471 | Msa0935050:intron | 50.0% | |
| TTGTCCGACACGAGTGTCAT+AGG | + | chr6_3:5348564-5348583 | Msa0935050:intron | 50.0% | |
| CACTCCTATGACACTCGTGT+CGG | - | chr6_3:5348571-5348590 | None:intergenic | 50.0% | |
| TGTGTGTGTGTGTGTGTGTG+TGG | + | chr6_3:5349138-5349157 | Msa0935050:intron | 50.0% | |
| GTGTGTGTGTGTGTGTGTGT+GGG | + | chr6_3:5349139-5349158 | Msa0935050:intron | 50.0% | |
| TGTGTGTGTGTGTGTGTGTG+GGG | + | chr6_3:5349138-5349157 | Msa0935050:intron | 50.0% | |
| GACCCAAATTGTGGTGTGGT+TGG | + | chr6_3:5349222-5349241 | Msa0935050:intron | 50.0% | |
| AAGGCGGGATTTGAGAAGGT+GGG | - | chr6_3:5349276-5349295 | None:intergenic | 50.0% | |
| AAGCAAGGCGGGATTTGAGA+AGG | - | chr6_3:5349280-5349299 | None:intergenic | 50.0% | |
| TTTCTCGACACTCCGCAATC+AGG | + | chr6_3:5349298-5349317 | Msa0935050:CDS | 50.0% | |
| TCAACGAAGCCTTGCTTCTG+AGG | + | chr6_3:5349364-5349383 | Msa0935050:CDS | 50.0% | |
| TTCCTCCAACCTCAGAAGCA+AGG | - | chr6_3:5349376-5349395 | None:intergenic | 50.0% | |
| GCTCTACCGCTATAGCATTG+TGG | + | chr6_3:5349516-5349535 | Msa0935050:intron | 50.0% | |
| GCTATAGCCCTATTGCGTAG+CGG | + | chr6_3:5349612-5349631 | Msa0935050:intron | 50.0% | |
| ACATCGAATTCGACTGCGAG+AGG | + | chr6_3:5349835-5349854 | Msa0935050:CDS | 50.0% | |
| TCCAACAAGCTTGGAGGAGG+GGG | + | chr6_3:5347940-5347959 | Msa0935050:CDS | 55.0% | |
| TGTATGAAGCACGGACGCGT+CGG | - | chr6_3:5348601-5348620 | None:intergenic | 55.0% | |
| GTGTGTGTGTGTGTGTGTGG+GGG | + | chr6_3:5349151-5349170 | Msa0935050:intron | 55.0% | |
| TGTGTGTGTGTGTGTGTGGG+GGG | + | chr6_3:5349152-5349171 | Msa0935050:intron | 55.0% | |
| GTGTGGTTGGATTCACCTGC+AGG | + | chr6_3:5349235-5349254 | Msa0935050:intron | 55.0% | |
| CAAGGCGGGATTTGAGAAGG+TGG | - | chr6_3:5349277-5349296 | None:intergenic | 55.0% | |
| !! | GAGTGTCGAGAAAGCAAGGC+GGG | - | chr6_3:5349291-5349310 | None:intergenic | 55.0% |
| !! | GGAGTGTCGAGAAAGCAAGG+CGG | - | chr6_3:5349292-5349311 | None:intergenic | 55.0% |
| !! | TGCGGAGTGTCGAGAAAGCA+AGG | - | chr6_3:5349295-5349314 | None:intergenic | 55.0% |
| TCGACACTCCGCAATCAGGA+GGG | + | chr6_3:5349302-5349321 | Msa0935050:CDS | 55.0% | |
| AGATCCCTCCCTCCTGATTG+CGG | - | chr6_3:5349313-5349332 | None:intergenic | 55.0% | |
| !! | CGAAGCCTTGCTTCTGAGGT+TGG | + | chr6_3:5349368-5349387 | Msa0935050:CDS | 55.0% |
| !! | AGCCTTGCTTCTGAGGTTGG+AGG | + | chr6_3:5349371-5349390 | Msa0935050:CDS | 55.0% |
| TCGAATTCGACTGCGAGAGG+TGG | + | chr6_3:5349838-5349857 | Msa0935050:CDS | 55.0% | |
| CTCTTTCCGGTCTTGCTCGG+CGG | + | chr6_3:5347869-5347888 | Msa0935050:CDS | 60.0% | |
| GAAGATCCGCCGAGCAAGAC+CGG | - | chr6_3:5347878-5347897 | None:intergenic | 60.0% | |
| TCCCCCTCCTCCAAGCTTGT+TGG | - | chr6_3:5347944-5347963 | None:intergenic | 60.0% | |
| AACAAGCTTGGAGGAGGGGG+AGG | + | chr6_3:5347943-5347962 | Msa0935050:CDS | 60.0% | |
| AGGAGGGGCCCAACAATCAC+AGG | + | chr6_3:5347963-5347982 | Msa0935050:CDS | 60.0% | |
| GTGTGTGTGTGTGTGTGGGG+GGG | + | chr6_3:5349153-5349172 | Msa0935050:intron | 60.0% | |
| CTCGACACTCCGCAATCAGG+AGG | + | chr6_3:5349301-5349320 | Msa0935050:CDS | 60.0% | |
| ACACTCCGCAATCAGGAGGG+AGG | + | chr6_3:5349305-5349324 | Msa0935050:CDS | 60.0% | |
| CACTCCGCAATCAGGAGGGA+GGG | + | chr6_3:5349306-5349325 | Msa0935050:CDS | 60.0% | |
| AAGCTTGGAGGAGGGGGAGG+AGG | + | chr6_3:5347946-5347965 | Msa0935050:CDS | 65.0% | |
| AGCTTGGAGGAGGGGGAGGA+GGG | + | chr6_3:5347947-5347966 | Msa0935050:CDS | 65.0% | |
| TGTGGGGGGGAGCTGAGCTT+TGG | + | chr6_3:5349166-5349185 | Msa0935050:intron | 65.0% | |
| GCTTGGAGGAGGGGGAGGAG+GGG | + | chr6_3:5347948-5347967 | Msa0935050:CDS | 70.0% | |
| CGACTGCGAGAGGTGGTGCC+TGG | + | chr6_3:5349845-5349864 | Msa0935050:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 5347533 | 5350226 | 5347533 | ID=Msa0935050;Name=Msa0935050 |
| chr6_3 | mRNA | 5347533 | 5350226 | 5347533 | ID=Msa0935050-mRNA-1;Parent=Msa0935050;Name=Msa0935050-mRNA-1;_AED=0.00;_eAED=0.00;_QI=154|1|1|1|0.66|0.75|4|243|176 |
| chr6_3 | exon | 5347533 | 5347680 | 5347533 | ID=Msa0935050-mRNA-1:exon:1629;Parent=Msa0935050-mRNA-1 |
| chr6_3 | exon | 5347859 | 5347984 | 5347859 | ID=Msa0935050-mRNA-1:exon:1630;Parent=Msa0935050-mRNA-1 |
| chr6_3 | exon | 5349257 | 5349418 | 5349257 | ID=Msa0935050-mRNA-1:exon:1631;Parent=Msa0935050-mRNA-1 |
| chr6_3 | exon | 5349735 | 5350226 | 5349735 | ID=Msa0935050-mRNA-1:exon:1632;Parent=Msa0935050-mRNA-1 |
| chr6_3 | five_prime_UTR | 5347533 | 5347680 | 5347533 | ID=Msa0935050-mRNA-1:five_prime_utr;Parent=Msa0935050-mRNA-1 |
| chr6_3 | five_prime_UTR | 5347859 | 5347864 | 5347859 | ID=Msa0935050-mRNA-1:five_prime_utr;Parent=Msa0935050-mRNA-1 |
| chr6_3 | CDS | 5347865 | 5347984 | 5347865 | ID=Msa0935050-mRNA-1:cds;Parent=Msa0935050-mRNA-1 |
| chr6_3 | CDS | 5349257 | 5349418 | 5349257 | ID=Msa0935050-mRNA-1:cds;Parent=Msa0935050-mRNA-1 |
| chr6_3 | CDS | 5349735 | 5349983 | 5349735 | ID=Msa0935050-mRNA-1:cds;Parent=Msa0935050-mRNA-1 |
| chr6_3 | three_prime_UTR | 5349984 | 5350226 | 5349984 | ID=Msa0935050-mRNA-1:three_prime_utr;Parent=Msa0935050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
