AlfalfaGEDB | Msa0935900

M. sativa cultivar zhongmu-4 / Msa0935900

KEGG: K00512|K07408
GO: GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
PFAM: PF00067.25

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0935900	XP_003618354.1	93.114	334	22	1	1	333	202	535	0.0	629

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0935900	sp\|O49858\|C82A3_SOYBN	63.363	333	120	1	1	333	197	527	7.20e-154	445

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0544930	Msa0935900	0.804512	2.085121e-49	-8.615850e-47
Msa0679560	Msa0935900	0.800432	1.445586e-48	-8.615850e-47
Msa0870200	Msa0935900	0.856073	4.117168e-62	-8.615850e-47
Msa0935900	Msa0972910	0.978648	2.878827e-146	-8.615850e-47
Msa0935900	Msa1445250	0.811072	8.404115e-51	-8.615850e-47

Showing 1 to 5 of 5 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0935900	MtrunA17_Chr6g0451691	93.114	334	22	1	1	333	202	535	0.0	629
Msa0935900	MtrunA17_Chr6g0451741	86.486	333	45	0	1	333	221	553	0.0	598
Msa0935900	MtrunA17_Chr4g0008101	75.449	334	80	2	1	333	200	532	0.0	518
Msa0935900	MtrunA17_Chr6g0451751	74.775	333	81	2	1	333	202	531	0.0	514
Msa0935900	MtrunA17_Chr6g0451781	71.171	333	95	1	1	333	233	564	1.29e-172	491
Msa0935900	MtrunA17_Chr3g0082701	66.467	334	111	1	1	333	199	532	1.53e-160	459
Msa0935900	MtrunA17_Chr6g0451641	62.763	333	120	2	1	333	196	524	5.21e-153	439
Msa0935900	MtrunA17_Chr6g0466941	62.090	335	122	3	2	333	193	525	4.58e-148	427
Msa0935900	MtrunA17_Chr6g0466901	62.048	332	122	3	1	330	192	521	2.22e-144	417
Msa0935900	MtrunA17_Chr2g0304871	53.538	325	146	2	1	325	195	514	1.33e-119	354

Showing 1 to 10 of 349 entries

Previous1 2 3 4 5…35Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0935900	AT4G31940.1	50.755	331	155	4	1	325	190	518	2.88e-112	336
Msa0935900	AT4G31950.1	50.151	331	157	4	1	325	178	506	4.29e-108	325
Msa0935900	AT4G31970.1	48.657	335	165	4	1	330	190	522	8.17e-107	322
Msa0935900	AT2G25160.1	47.748	333	166	4	3	332	193	520	5.27e-104	315
Msa0935900	AT3G25180.1	48.358	335	161	7	1	333	191	515	6.95e-95	291
Msa0935900	AT5G07990.1	44.345	336	167	7	4	330	184	508	6.73e-89	276
Msa0935900	AT4G37320.1	38.080	323	180	5	2	324	186	488	5.35e-66	216
Msa0935900	AT2G45560.1	39.172	314	178	5	23	328	204	512	1.02e-65	216
Msa0935900	AT1G66540.2	37.771	323	182	5	2	324	13	316	1.61e-65	210
Msa0935900	AT1G66540.1	38.700	323	179	6	2	324	72	375	4.78e-65	210

Showing 1 to 10 of 265 entries

Previous1 2 3 4 5…27Next

Find 129 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTATGTGCTAGCGGAGT+TGG	0.428424	6_3:+6505531	Msa0935900:five_prime_UTR
AAAGAGGCACCAATAGCCGA+AGG	0.655043	6_3:+6505094	Msa0935900:five_prime_UTR
AAAGTCTTATCCCATTAAAT+GGG	0.475020	6_3:-6507492	None:intergenic
AAATCCATTATAGTTTGATG+AGG	0.594445	6_3:-6504965	None:intergenic
AACATCAACATCTTTATGAG+TGG	0.615869	6_3:-6507121	None:intergenic
AACATTACAAACTAAAGGCT+AGG	0.545622	6_3:-6507582	None:intergenic
AACTAGTGTCACCCTTACAT+GGG	0.598692	6_3:+6506783	Msa0935900:CDS
AAGAAATTGATGCATTTGTT+TGG	0.360854	6_3:+6505673	Msa0935900:CDS
AAGGTACCTAAGACTCTATG+GGG	0.714553	6_3:-6505166	None:intergenic
AAGTATTGGCCATGCACCTT+CGG	0.449287	6_3:-6505110	None:intergenic

Showing 1 to 10 of 129 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ACAACCTCATCAAACTATAA+TGG	+	chr6_3:6504961-6504980	Msa0935900:five_prime_UTR	30.0%
CCAAATAGAAACAAACATAG+GGG	-	chr6_3:6505046-6505065	None:intergenic	30.0%
TTTAATTCTCAACAATTGGG+AGG	+	chr6_3:6505240-6505259	Msa0935900:five_prime_UTR	30.0%
ATGTGTAGTAAAACATTCCT+TGG	-	chr6_3:6505269-6505288	None:intergenic	30.0%
TTTAATCGATGCTTGAACTT+CGG	-	chr6_3:6505464-6505483	None:intergenic	30.0%
GAAATTGATGCATTTGTTTG+GGG	+	chr6_3:6505675-6505694	Msa0935900:CDS	30.0%
AAAAATCTTATCCAACTCCT+TGG	-	chr6_3:6505779-6505798	None:intergenic	30.0%
ACATATACATACCAATAGTG+TGG	-	chr6_3:6505947-6505966	None:intergenic	30.0%
TGACCAAAAAAAATATAGCG+AGG	-	chr6_3:6505994-6506013	None:intergenic	30.0%
GTATTTATTGAGGGTAAAGT+TGG	-	chr6_3:6506195-6506214	None:intergenic	30.0%

Showing 1 to 10 of 188 entries

Previous1 2 3 4 5…19Next

Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	6504901	6507624	6504901	ID=Msa0935900;Name=Msa0935900
chr6_3	mRNA	6504901	6507624	6504901	ID=Msa0935900-mRNA-1;Parent=Msa0935900;Name=Msa0935900-mRNA-1;_AED=0.35;_eAED=0.35;_QI=682\|1\|1\|1\|1\|1\|2\|238\|333
chr6_3	exon	6504901	6505954	6504901	ID=Msa0935900-mRNA-1:exon:2090;Parent=Msa0935900-mRNA-1
chr6_3	exon	6506757	6507624	6506757	ID=Msa0935900-mRNA-1:exon:2091;Parent=Msa0935900-mRNA-1
chr6_3	five_prime_UTR	6504901	6505582	6504901	ID=Msa0935900-mRNA-1:five_prime_utr;Parent=Msa0935900-mRNA-1
chr6_3	CDS	6505583	6505954	6505583	ID=Msa0935900-mRNA-1:cds;Parent=Msa0935900-mRNA-1
chr6_3	CDS	6506757	6507386	6506757	ID=Msa0935900-mRNA-1:cds;Parent=Msa0935900-mRNA-1
chr6_3	three_prime_UTR	6507387	6507624	6507387	ID=Msa0935900-mRNA-1:three_prime_utr;Parent=Msa0935900-mRNA-1

Gene Sequence

>Msa0935900

ATGGTTCTTCGAATGGTCGTTGGAAAAAGATATTTTGGTCTAACACCTAGTTCTGAGGAAGATGAATCCAAAAGATGTGTGAATGCTTTGAAGAAATTGATGCATTTGTTTGGGGTAATTACAGTGGGAGATGTTATTCCTTGCTTGAATTTTTTTGATTTTGGTGGTTATGTGAAGGCCATGAAAGAAACTTCCAAGGAGTTGGATAAGATTTTTGATGAATGGTTGAAAGAGCGTCGCCATAAAAGGACTTTGCATGAAAAAGTTGATGATCAAAGTAATCAAGATATCATGGATGTGTTACTTTCATTGCTTGATGGAACAACCATTGAAGGATTTGATGGTGATACCATAATCAAAGCCACACTATTGACACTGTTTTCTGGAGGAAGTGACACAACTAGTGTCACCCTTACATGGGCACTATGTTTGCTATTGAACAATCCTCATGTAATGGAAAAAGCAAAAGAAGAACTCGACGCTCAAATTGGCAAAGAGAGACGTGTAAGTGAGTCGGATATAAATAAATTGACATACCTTCAAGCTATAGTCAAAGAAACACTGCGATTATATCCACCCGCCCCTCTTTCAGGACCTCGTGAATTCTCGGAGAATTGTACTTTAGGTCGTTATCATGTTATAAAGGGAACTCGATTAATCACAAATCTTTGGAAGATTAACACAGATTCTAATATTTGGCCAGATCCATTAGAGTTCAAACCAGAAAGATTTCTTACCACTCATAAAGATGTTGATGTTAGGGGTAGCAATTTTGTGCTATTACCATTTGGAAGTGGTAGAAGGATATGCCCTGGAATATCACTTGGACTTCAAATGTTGCATTTCATTCTAGCTAATTTTTTGCATTCCTTTGATATCTTAAATCCAACCCCAGAACTTGTTGATATGAGTGAATCCTTTGGATTAACAAACACTAAAGCTACTCCTCTTAAGGTTCTCATTAAACCACGTCTGTCTATCAATTGTTATGAAATCATGTGA

Protein sequence

>Msa0935900

MVLRMVVGKRYFGLTPSSEEDESKRCVNALKKLMHLFGVITVGDVIPCLNFFDFGGYVKAMKETSKELDKIFDEWLKERRHKRTLHEKVDDQSNQDIMDVLLSLLDGTTIEGFDGDTIIKATLLTLFSGGSDTTSVTLTWALCLLLNNPHVMEKAKEELDAQIGKERRVSESDINKLTYLQAIVKETLRLYPPAPLSGPREFSENCTLGRYHVIKGTRLITNLWKINTDSNIWPDPLEFKPERFLTTHKDVDVRGSNFVLLPFGSGRRICPGISLGLQMLHFILANFLHSFDILNPTPELVDMSESFGLTNTKATPLKVLIKPRLSINCYEIM*