AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0544930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0544930 MtrunA17_Chr4g0025521 95.781 711 29 1 1 710 1 711 0.0 1321
Msa0544930 MtrunA17_Chr7g0267481 45.222 743 291 26 1 710 1 660 5.20e-166 492
Msa0544930 MtrunA17_Chr1g0177751 46.122 735 285 28 1 710 1 649 7.20e-163 484
Msa0544930 MtrunA17_Chr3g0141941 44.893 421 173 15 90 492 56 435 1.94e-95 305
Msa0544930 MtrunA17_Chr1g0155681 58.052 267 97 4 218 476 172 431 3.81e-95 307
Msa0544930 MtrunA17_Chr8g0373801 50.890 281 131 3 216 490 388 667 2.44e-83 281
Msa0544930 MtrunA17_Chr5g0403251 51.273 275 126 4 206 476 329 599 3.66e-78 265
Msa0544930 MtrunA17_Chr8g0387321 52.708 277 118 3 216 486 185 454 3.88e-78 262
Msa0544930 MtrunA17_Chr3g0141931 45.172 290 141 4 209 490 158 437 9.70e-72 240
Msa0544930 MtrunA17_Chr4g0028701 39.506 324 144 5 216 493 245 562 1.04e-63 224
Msa0544930 MtrunA17_Chr4g0008591 42.908 282 124 4 216 489 196 448 6.53e-62 218
Msa0544930 MtrunA17_Chr7g0240371 43.590 273 133 6 216 484 137 392 4.49e-60 211
Msa0544930 MtrunA17_Chr2g0327021 38.854 314 163 7 216 508 248 553 4.84e-59 210
Msa0544930 MtrunA17_Chr1g0151681 36.336 333 172 9 179 483 186 506 3.10e-52 189
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0544930 AT2G35940.3 42.649 755 313 27 1 710 1 680 1.19e-133 410
Msa0544930 AT2G35940.1 42.649 755 313 27 1 710 1 680 1.19e-133 410
Msa0544930 AT2G35940.2 42.649 755 313 27 1 710 1 680 1.19e-133 410
Msa0544930 AT2G16400.1 51.149 348 136 8 149 491 57 375 3.31e-97 309
Msa0544930 AT4G34610.2 50.568 352 143 10 175 516 94 424 1.55e-95 306
Msa0544930 AT4G34610.4 50.568 352 143 10 175 516 94 424 1.55e-95 306
Msa0544930 AT4G34610.3 50.568 352 143 10 175 516 94 424 1.55e-95 306
Msa0544930 AT4G34610.1 50.568 352 143 10 175 516 94 424 1.55e-95 306
Msa0544930 AT1G75410.1 53.310 287 111 7 205 482 160 432 3.64e-88 286
Msa0544930 AT1G75410.2 53.310 287 111 7 205 482 160 432 3.64e-88 286
Msa0544930 AT1G19700.1 53.069 277 99 6 217 477 166 427 1.76e-87 285
Msa0544930 AT1G19700.3 53.069 277 99 6 217 477 166 427 1.76e-87 285
Msa0544930 AT1G19700.5 53.069 277 99 6 217 477 166 427 1.76e-87 285
Msa0544930 AT1G19700.4 53.069 277 99 6 217 477 166 427 1.76e-87 285
Msa0544930 AT1G19700.2 53.069 277 99 6 217 477 166 427 1.76e-87 285
Msa0544930 AT2G27220.1 46.648 358 144 9 146 501 12 324 3.38e-86 278
Msa0544930 AT2G27220.3 46.648 358 144 9 146 501 12 324 3.38e-86 278
Msa0544930 AT2G27220.2 44.415 376 144 10 146 501 12 342 4.93e-82 268
Msa0544930 AT2G23760.2 52.809 267 112 3 208 468 233 491 2.02e-80 269
Msa0544930 AT2G23760.1 52.809 267 112 3 208 468 233 491 2.02e-80 269
Msa0544930 AT2G23760.3 52.809 267 112 3 208 468 233 491 2.02e-80 269
Msa0544930 AT4G36870.2 51.351 259 115 3 216 468 312 565 1.08e-78 267
Msa0544930 AT4G36870.1 51.351 259 115 3 216 468 312 565 1.08e-78 267
Msa0544930 AT2G23760.4 44.201 319 112 4 208 468 233 543 1.33e-70 243
Msa0544930 AT1G75410.3 50.973 257 90 7 205 448 160 393 1.56e-70 236
Msa0544930 AT5G41410.1 46.014 276 130 3 217 476 194 466 1.60e-68 236
Msa0544930 AT4G36870.4 47.500 240 115 3 216 449 312 546 6.16e-63 219
Msa0544930 AT4G36870.3 47.059 238 115 3 216 447 312 544 9.23e-62 217
Msa0544930 AT1G75430.1 40.484 289 146 8 210 481 10 289 1.98e-60 205
Msa0544930 AT5G02030.1 41.137 299 123 4 197 472 151 419 1.14e-59 211
Msa0544930 AT4G32980.1 37.460 315 165 7 177 478 154 449 1.13e-51 187
Msa0544930 AT4G32980.2 37.460 315 165 7 177 478 154 449 1.13e-51 187
Msa0544930 AT2G27990.1 38.562 306 152 8 174 473 221 496 2.16e-49 183
Msa0544930 AT1G75430.2 35.526 228 128 7 210 427 10 228 7.24e-32 125
Msa0544930 AT2G27990.2 31.154 260 143 8 174 427 221 450 2.14e-23 104

Find 225 sgRNAs with CRISPR-Local

Find 387 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCTTTAACGTGTAAATT+TGG 0.153758 4_1:+34232082 None:intergenic
AGAAAGATTAATGGAACTTT+TGG 0.216027 4_1:+34232579 None:intergenic
GCATGAATGTAATTTGTATT+TGG 0.245393 4_1:-34226541 Msa0544930:three_prime_UTR
TGATGTTGACATTGAATTAT+TGG 0.252974 4_1:+34227371 None:intergenic
CAAAATCACATATAATTTCT+AGG 0.265756 4_1:+34226807 None:intergenic
ATTCCACCTTCCAACTTTCA+TGG 0.270274 4_1:-34231761 Msa0544930:CDS
CTCTCTCAGAATTTACATTT+AGG 0.274546 4_1:-34226973 Msa0544930:CDS
GGGTCCTTTCAATCCAATTC+TGG 0.288442 4_1:-34227330 Msa0544930:CDS
CTGCTTTGAGATTGTCTTCA+AGG 0.297342 4_1:+34229427 None:intergenic
AATTCTGGTTTCCATCTTGC+AGG 0.297418 4_1:-34227315 Msa0544930:CDS
GTGTTAAGTTAGAAGGTTCT+AGG 0.298713 4_1:-34229328 Msa0544930:CDS
TCTTGCAAGCATAACCTTAT+CGG 0.300640 4_1:+34228387 None:intergenic
ACAAATAGATCAAAAGAATT+AGG 0.307786 4_1:-34227483 Msa0544930:CDS
TCACTGTTGGAGAAAGGTTT+TGG 0.308937 4_1:+34227403 None:intergenic
ACTTCTCCCCACGCGCTTCA+TGG 0.312584 4_1:-34231842 Msa0544930:CDS
AGGAGGGACGATTGATGAAA+TGG 0.313418 4_1:-34226953 Msa0544930:CDS
TTTGAGCAAGCAACAGGATA+TGG 0.320173 4_1:-34229476 Msa0544930:CDS
TGCTTGGGTGTTAAGTTAGA+AGG 0.330959 4_1:-34229335 Msa0544930:CDS
TCAGAGTAAGGTACGTAGTT+TGG 0.340254 4_1:+34231929 None:intergenic
CTTCGCAGCAAACGCCTTAC+CGG 0.347714 4_1:-34231475 Msa0544930:CDS
TTGCTAGCTCTATTATGATT+GGG 0.355291 4_1:+34232622 None:intergenic
AGGAGGGGAAGAAAGATTAA+TGG 0.357424 4_1:+34232570 None:intergenic
ATTGCTAGCTCTATTATGAT+TGG 0.358539 4_1:+34232621 None:intergenic
TCAAGGTAGTTTCCTTTCAA+TGG 0.367613 4_1:-34227256 Msa0544930:CDS
GAGTTTCGCCCGCAGCAAAT+TGG 0.368022 4_1:-34231542 Msa0544930:CDS
GACAAACCACGCTGATAAAC+TGG 0.368350 4_1:+34231509 None:intergenic
AATCATCATGGTGGTGGTTA+TGG 0.369811 4_1:-34227135 Msa0544930:CDS
TACATACTTTAATATGGTAT+TGG 0.369864 4_1:-34226650 Msa0544930:three_prime_UTR
GTTATGCTTGCAAGACAAAC+TGG 0.371730 4_1:-34228379 Msa0544930:CDS
TGATCTATTTGTGTTATCCT+TGG 0.372128 4_1:+34227494 None:intergenic
AGAACAGAAACAGCTCTTTC+AGG 0.372428 4_1:+34229212 None:intergenic
GGAGGGACGATTGATGAAAT+GGG 0.373488 4_1:-34226952 Msa0544930:CDS
CACTATAACATGTGGGGATC+AGG 0.378783 4_1:-34231650 Msa0544930:CDS
AGAATTAATTCTGACAGATA+TGG 0.379407 4_1:-34232038 Msa0544930:exon
CAAGACAAACTGGACTTACT+AGG 0.381649 4_1:-34228369 Msa0544930:CDS
TCTCAATGGAAGATGTTAGA+AGG 0.381842 4_1:-34227107 Msa0544930:CDS
ATATCACACTTTGCATTTGA+TGG 0.388198 4_1:+34229504 None:intergenic
CTGTTTCTGTTCTTCGTGCT+TGG 0.388531 4_1:-34229202 Msa0544930:CDS
CAAGTTGAGTTGGATTAAGT+TGG 0.389678 4_1:-34226681 Msa0544930:three_prime_UTR
TTTCATTTCCACTCAATAAA+GGG 0.390624 4_1:+34227157 None:intergenic
GAAATCCAACCGTCGGTAGA+AGG 0.392044 4_1:-34231977 Msa0544930:CDS
TTATATAATAAGCGTCTGTT+TGG 0.393613 4_1:+34226714 None:intergenic
GTCTACTAATTAATTGCAAA+TGG 0.398084 4_1:-34232515 Msa0544930:five_prime_UTR
GTTGCTGTGACAGCGTTATC+AGG 0.403199 4_1:+34231617 None:intergenic
TAAGACAGCTAGCAAGACTT+TGG 0.403443 4_1:-34229369 Msa0544930:CDS
ACGCCTTACCGGTCGGCCTC+TGG 0.404712 4_1:-34231464 Msa0544930:CDS
CATAACCTTATCGGAGTCCT+TGG 0.408384 4_1:+34228396 None:intergenic
CTGATCCCCACATGTTATAG+TGG 0.410131 4_1:+34231651 None:intergenic
AAAGTGATGTGTATGGGATT+TGG 0.412182 4_1:-34226443 Msa0544930:three_prime_UTR
TGCAAGATGGAAACCAGAAT+TGG 0.412205 4_1:+34227317 None:intergenic
AAGGTATACATACTTTAATA+TGG 0.412519 4_1:-34226656 Msa0544930:three_prime_UTR
GATATGGCAACGTACTTTCA+TGG 0.416361 4_1:-34232022 Msa0544930:CDS
GCTGCAGTGCCCGCTGTTGT+CGG 0.418316 4_1:+34229282 None:intergenic
ATTTGCTGCGGGCGAAACTC+TGG 0.420271 4_1:+34231545 None:intergenic
AGTTAGAAGGTTCTAGGCTT+CGG 0.429264 4_1:-34229322 Msa0544930:CDS
TTGAAAGGAAACTACCTTGA+TGG 0.429916 4_1:+34227259 None:intergenic
ACGGTAGCCGAAGAGGAAAA+TGG 0.435943 4_1:+34231686 None:intergenic
AACACTACTCCTTCTCATTC+AGG 0.436567 4_1:-34226901 Msa0544930:CDS
AATGGTGTTTCTCTAACTCT+TGG 0.436577 4_1:-34227045 Msa0544930:CDS
TTGATATTGAAAACAGAAAG+AGG 0.441083 4_1:-34226861 Msa0544930:CDS
AAGCTTGTTAATTTGAAGCT+TGG 0.443810 4_1:+34232163 None:intergenic
TGGTGAGATTGAGGTATCTC+CGG 0.447805 4_1:-34231444 Msa0544930:CDS
GTTATTCTCCTCTTGCTCCT+TGG 0.449308 4_1:+34227521 None:intergenic
TCATCATTTGAGCAAGCAAC+AGG 0.451763 4_1:-34229482 Msa0544930:CDS
CTCAATCAACACCACTTGCT+TGG 0.452628 4_1:-34231791 Msa0544930:CDS
TTGAGATTGTCTTCAAGGCT+AGG 0.454466 4_1:+34229432 None:intergenic
GCTCCTAGGTTCCATGGAAA+TGG 0.455886 4_1:-34227063 Msa0544930:CDS
TTGAAGTTTCAACAAAATCC+TGG 0.456383 4_1:-34226770 Msa0544930:three_prime_UTR
TTGAAATCACTGTTGGAGAA+AGG 0.457475 4_1:+34227397 None:intergenic
AAGACAGCTAGCAAGACTTT+GGG 0.459364 4_1:-34229368 Msa0544930:CDS
GATGTGGTGGAAATCATTAA+AGG 0.459536 4_1:-34226508 Msa0544930:three_prime_UTR
TTGGGTGAAGATGATTGCTT+GGG 0.462431 4_1:-34229350 Msa0544930:CDS
TTGGAACTTGAAATCACTGT+TGG 0.463404 4_1:+34227390 None:intergenic
CAGCGGGCACTGCAGCAACT+TGG 0.465763 4_1:-34229275 Msa0544930:CDS
TTAGTGAGCAATTAGCTCCT+AGG 0.468409 4_1:-34227077 Msa0544930:CDS
GTACGTAGTTTGGATTCATA+AGG 0.468791 4_1:+34231939 None:intergenic
TGAAGTTGTGAATGTGGATA+AGG 0.475584 4_1:-34231327 Msa0544930:CDS
TCTCAGAATTTACATTTAGG+AGG 0.475857 4_1:-34226970 Msa0544930:CDS
TTATAAGACTCAAGTTGAGT+TGG 0.479257 4_1:-34226691 Msa0544930:three_prime_UTR
GGTAGCCGTGGAGGCGAGGA+AGG 0.483983 4_1:-34231422 Msa0544930:CDS
GAGTTGGATTAAGTTGGAAA+AGG 0.490139 4_1:-34226675 Msa0544930:three_prime_UTR
CCACCAACTCCGACAACAGC+GGG 0.492092 4_1:-34229291 Msa0544930:CDS
CTGAGAGAGAAATCCATGTT+GGG 0.492621 4_1:+34226987 None:intergenic
GGGAGAAGTACTATTGTTAG+TGG 0.493209 4_1:+34231856 None:intergenic
GTGCCCGCTGTTGTCGGAGT+TGG 0.494381 4_1:+34229288 None:intergenic
GAATGATTCATAGCAATGCT+TGG 0.495045 4_1:-34229253 Msa0544930:CDS
AACTGGACTTACTAGGAGTC+AGG 0.495725 4_1:-34228362 Msa0544930:intron
CAATTAGCTCCTAGGTTCCA+TGG 0.502313 4_1:-34227069 Msa0544930:CDS
TCACCAGAGGCCGACCGGTA+AGG 0.503130 4_1:+34231461 None:intergenic
AAGTACATTTCTTCAACCAT+TGG 0.504400 4_1:+34227552 None:intergenic
CTTTCTTCCCCTCCTCGTGC+GGG 0.504475 4_1:-34232562 Msa0544930:five_prime_UTR
TAACGTGTAAATTTGGATTG+TGG 0.505360 4_1:+34232089 None:intergenic
AATGAATACCCTTTATTGAG+TGG 0.507581 4_1:-34227165 Msa0544930:CDS
TGAGATTGTCTTCAAGGCTA+GGG 0.509850 4_1:+34229433 None:intergenic
GAAGTTGTGAATGTGGATAA+GGG 0.514101 4_1:-34231326 Msa0544930:CDS
CTATTGTTAGTGGTAGCGTT+GGG 0.514843 4_1:+34231866 None:intergenic
TGGTTTCCACAAGCGAACTC+TGG 0.515046 4_1:+34227572 None:intergenic
TAGTTTCCTTTCAATGGACA+TGG 0.518524 4_1:-34227250 Msa0544930:CDS
TCTTTCTTCCCCTCCTCGTG+CGG 0.519485 4_1:-34232563 Msa0544930:five_prime_UTR
ACTATTGTTAGTGGTAGCGT+TGG 0.521182 4_1:+34231865 None:intergenic
TTCCACACGCAAAATTCACT+TGG 0.521622 4_1:-34232671 Msa0544930:five_prime_UTR
GACGAAATCATGTTGCCACC+AGG 0.522786 4_1:+34226752 None:intergenic
CCACAGAGTTTGAAGTTGAA+AGG 0.523168 4_1:-34227203 Msa0544930:CDS
TCAATTCCATGTCCATTGAA+AGG 0.523266 4_1:+34227244 None:intergenic
CTCAGAATTTACATTTAGGA+GGG 0.524512 4_1:-34226969 Msa0544930:CDS
TGCTAGCTCTATTATGATTG+GGG 0.525049 4_1:+34232623 None:intergenic
TTCAATGTCAACATCACCAA+TGG 0.525243 4_1:-34227364 Msa0544930:CDS
CCTCTCTCTTCAACCCAACA+TGG 0.526082 4_1:-34227000 Msa0544930:CDS
TGTAGGAGTGTCGGTAGTGT+TGG 0.526282 4_1:+34231736 None:intergenic
GAAACCAGAATTGGATTGAA+AGG 0.527024 4_1:+34227326 None:intergenic
CCCGCTGTTGTCGGAGTTGG+TGG 0.528625 4_1:+34229291 None:intergenic
GGAAAATTAACCAGGTATGT+AGG 0.528627 4_1:-34226629 Msa0544930:three_prime_UTR
GGTGAGATTGAGGTATCTCC+GGG 0.529905 4_1:-34231443 Msa0544930:CDS
TCCGGGTAGCCGTGGAGGCG+AGG 0.533224 4_1:-34231426 Msa0544930:CDS
TTTGGGTGAAGATGATTGCT+TGG 0.533846 4_1:-34229351 Msa0544930:CDS
GACCCTCCTTCTCCTCCCAT+TGG 0.534808 4_1:+34227348 None:intergenic
AGTGTTGGATCCATGAAAGT+TGG 0.535269 4_1:+34231751 None:intergenic
AGATATGAAAGTGATGTGTA+TGG 0.535817 4_1:-34226450 Msa0544930:three_prime_UTR
TCTGAGAGAGAAATCCATGT+TGG 0.535848 4_1:+34226986 None:intergenic
GAAACTTCATATGGTTGTGT+AGG 0.538056 4_1:+34231719 None:intergenic
TAAACGCCAGAGTTCGCTTG+TGG 0.538237 4_1:-34227578 Msa0544930:CDS
TGCAATTAATTAGTAGACAA+AGG 0.538398 4_1:+34232520 None:intergenic
AATGGTTGAAGAAATGTACT+TGG 0.541831 4_1:-34227550 Msa0544930:CDS
TGAAAGGAAACTACCTTGAT+GGG 0.542083 4_1:+34227260 None:intergenic
GTCGGCCTCTGGTGAGATTG+AGG 0.544425 4_1:-34231453 Msa0544930:CDS
TTATCCCAAGGACTCCGATA+AGG 0.544643 4_1:-34228401 Msa0544930:CDS
CATCAGATGATCCTGCAAGA+TGG 0.545078 4_1:+34227304 None:intergenic
CGTGGAGGCGAGGAAGGTGG+TGG 0.547728 4_1:-34231416 Msa0544930:CDS
ATAACCTTATCGGAGTCCTT+GGG 0.549058 4_1:+34228397 None:intergenic
ATGAGAAGGAGTAGTGTTGA+TGG 0.552006 4_1:+34226906 None:intergenic
TTCAACTTCAAACTCTGTGG+TGG 0.552624 4_1:+34227206 None:intergenic
CAATCTCACCAGAGGCCGAC+CGG 0.552708 4_1:+34231456 None:intergenic
TCCTCGCCTCCACGGCTACC+CGG 0.553350 4_1:+34231425 None:intergenic
ACATCACCAATGGGAGGAGA+AGG 0.558319 4_1:-34227354 Msa0544930:CDS
TTAGAGAAACACCATTTCCA+TGG 0.559032 4_1:+34227052 None:intergenic
TCAATGTCAACATCACCAAT+GGG 0.559905 4_1:-34227363 Msa0544930:CDS
GTAAACCTTCTACCGACGGT+TGG 0.560766 4_1:+34231972 None:intergenic
TATGAAAACCAATTTGCTGC+GGG 0.560781 4_1:+34231534 None:intergenic
TAATTTGTTCCTGAATGAGA+AGG 0.560909 4_1:+34226892 None:intergenic
CTCGTCCCCACTATAACATG+TGG 0.566142 4_1:-34231658 Msa0544930:CDS
AGCCGTGGAGGCGAGGAAGG+TGG 0.567527 4_1:-34231419 Msa0544930:CDS
GGAAGAAACCAAGGAGCAAG+AGG 0.569522 4_1:-34227529 Msa0544930:CDS
ATGGAATTCCCGCACGAGGA+GGG 0.570104 4_1:+34232554 None:intergenic
TCACCAATGGGAGGAGAAGG+AGG 0.571505 4_1:-34227351 Msa0544930:CDS
GAACAATGTAGGTAGAGCTA+AGG 0.571744 4_1:-34229541 Msa0544930:intron
AATACAAATTACATTCATGC+AGG 0.573041 4_1:+34226544 None:intergenic
TGATCCCCACATGTTATAGT+GGG 0.573944 4_1:+34231652 None:intergenic
TGGTTATGGATCATTCTCAA+TGG 0.575128 4_1:-34227121 Msa0544930:CDS
AGTTCGCTTGTGGAAACCAA+TGG 0.575659 4_1:-34227568 Msa0544930:CDS
ATGCATGCAGCAGTAGGGTA+TGG 0.576937 4_1:+34226398 None:intergenic
GACAAAGGCAGCTACAAGGA+TGG 0.577961 4_1:+34232535 None:intergenic
TGGAATTCCCGCACGAGGAG+GGG 0.581086 4_1:+34232555 None:intergenic
GTAATAACAACAAAGAGAAG+AGG 0.583452 4_1:-34231268 Msa0544930:CDS
AATATTGAATCTAGTTCAAG+TGG 0.585962 4_1:-34231239 Msa0544930:CDS
TGATTCATAGCAATGCTTGG+AGG 0.588232 4_1:-34229250 Msa0544930:CDS
TGGTGTTGATTGAGTGATGA+AGG 0.588479 4_1:+34231800 None:intergenic
GTGGATAAGGGAATCATCAA+AGG 0.589254 4_1:-34231314 Msa0544930:CDS
CACCACCTTCCTCGCCTCCA+CGG 0.590288 4_1:+34231417 None:intergenic
TCATTCAACTCCTACATACC+TGG 0.591092 4_1:+34226619 None:intergenic
CACATGTTATAGTGGGGACG+AGG 0.591269 4_1:+34231659 None:intergenic
TTTGCATGCATGCAGCAGTA+GGG 0.591778 4_1:+34226393 None:intergenic
AGTAGACAAAGGCAGCTACA+AGG 0.593196 4_1:+34232531 None:intergenic
AATCATCAAAGGAGAATCTG+TGG 0.597233 4_1:-34231303 Msa0544930:CDS
TCACACTTTGCATTTGATGG+TGG 0.598415 4_1:+34229507 None:intergenic
AGGAGTCACGGTAGCCGAAG+AGG 0.600422 4_1:+34231679 None:intergenic
TGGAAGGTGGAAACTTCATA+TGG 0.602748 4_1:+34231710 None:intergenic
CTTGAATCCATGAAGCGCGT+GGG 0.602989 4_1:+34231835 None:intergenic
ATATGGTTGTGTAGGAGTGT+CGG 0.603447 4_1:+34231727 None:intergenic
GAGGTATCTCCGGGTAGCCG+TGG 0.603840 4_1:-34231434 Msa0544930:CDS
ACACCATTTCCATGGAACCT+AGG 0.604931 4_1:+34227060 None:intergenic
CAGGATCATCTGATGTGCAA+AGG 0.605084 4_1:-34227296 Msa0544930:CDS
GGTGGAGTTTCGACCATGAA+CGG 0.607341 4_1:-34231398 Msa0544930:CDS
GTCTGTAAACCTTCTACCGA+CGG 0.607577 4_1:+34231968 None:intergenic
ATCAAAGGAGAATCTGTGGA+AGG 0.608300 4_1:-34231299 Msa0544930:CDS
CCATGTTGGGTTGAAGAGAG+AGG 0.608631 4_1:+34227000 None:intergenic
CGAAGAGGAAAATGGATGGA+AGG 0.608690 4_1:+34231694 None:intergenic
TCGTCCCCACTATAACATGT+GGG 0.609880 4_1:-34231657 Msa0544930:CDS
ACTTGAATCCATGAAGCGCG+TGG 0.612796 4_1:+34231834 None:intergenic
CTTTCAGGCAAGCCTCTCTG+AGG 0.615305 4_1:+34229227 None:intergenic
GATTTCGTCAAACTCAGCGT+TGG 0.617385 4_1:-34226738 Msa0544930:three_prime_UTR
ATGGTATTGGAAAATTAACC+AGG 0.618579 4_1:-34226637 Msa0544930:three_prime_UTR
GGTGGAAGAGAAAACAATGG+AGG 0.618595 4_1:-34231218 Msa0544930:CDS
CTATGAAAACCAATTTGCTG+CGG 0.619359 4_1:+34231533 None:intergenic
TCTTGATGAAGTTGTGAATG+TGG 0.620303 4_1:-34231333 Msa0544930:CDS
ATTGAATCTAGTTCAAGTGG+TGG 0.621430 4_1:-34231236 Msa0544930:CDS
TAGCTCTATTATGATTGGGG+TGG 0.621491 4_1:+34232626 None:intergenic
TTGAATCCATGAAGCGCGTG+GGG 0.624444 4_1:+34231836 None:intergenic
AATGAAAATCATCATGGTGG+TGG 0.625687 4_1:-34227141 Msa0544930:CDS
TGGTTAGTACGTAGATGTGG+TGG 0.626648 4_1:-34226521 Msa0544930:three_prime_UTR
AATGTACTTGGAAGAAACCA+AGG 0.627170 4_1:-34227538 Msa0544930:CDS
AGTGGAAATGAAAATCATCA+TGG 0.627811 4_1:-34227147 Msa0544930:CDS
GATCCATGAAAGTTGGAAGG+TGG 0.629051 4_1:+34231758 None:intergenic
AGAGGAAAATGGATGGAAGG+TGG 0.629203 4_1:+34231697 None:intergenic
ATTTGGTTAGTACGTAGATG+TGG 0.629992 4_1:-34226524 Msa0544930:three_prime_UTR
GATATGAAAGTGATGTGTAT+GGG 0.630522 4_1:-34226449 Msa0544930:three_prime_UTR
GCTTGTTAGCATGCTAGATG+AGG 0.632117 4_1:-34231135 Msa0544930:intron
GTATCTCCGGGTAGCCGTGG+AGG 0.632306 4_1:-34231431 Msa0544930:CDS
AGAGGAGAATAACGACTCCA+AGG 0.633442 4_1:-34227511 Msa0544930:CDS
GTGGAAGAGAAAACAATGGA+GGG 0.633833 4_1:-34231217 Msa0544930:CDS
ATAGTGGGGACGAGGAGTCA+CGG 0.640127 4_1:+34231667 None:intergenic
CATAGACCAGTTTATCAGCG+TGG 0.640750 4_1:-34231515 Msa0544930:CDS
TGTGACCTGCAGTTATCCCA+AGG 0.642673 4_1:-34228413 Msa0544930:intron
CACCAATGGGAGGAGAAGGA+GGG 0.642966 4_1:-34227350 Msa0544930:CDS
CCTTTCAACTTCAAACTCTG+TGG 0.643049 4_1:+34227203 None:intergenic
TAGCCGAAGAGGAAAATGGA+TGG 0.643157 4_1:+34231690 None:intergenic
GAATAGTAACTCCAAGCAAG+TGG 0.643953 4_1:+34231780 None:intergenic
AAAGGAGAATCTGTGGAAGG+AGG 0.648166 4_1:-34231296 Msa0544930:CDS
CGTCCCCACTATAACATGTG+GGG 0.666378 4_1:-34231656 Msa0544930:CDS
AAGTTTCAACAAAATCCTGG+TGG 0.668888 4_1:-34226767 Msa0544930:three_prime_UTR
GCAGCAAACGCCTTACCGGT+CGG 0.670260 4_1:-34231471 Msa0544930:CDS
CAGTTCTGAAATCCAACCGT+CGG 0.674796 4_1:-34231984 Msa0544930:CDS
TTGAGTGATGAAGGCGCGTG+AGG 0.679037 4_1:+34231809 None:intergenic
ACCACCAACTCCGACAACAG+CGG 0.680001 4_1:-34229292 Msa0544930:CDS
AAGGATGGAATTCCCGCACG+AGG 0.681112 4_1:+34232550 None:intergenic
GATGGAATTCCCGCACGAGG+AGG 0.681883 4_1:+34232553 None:intergenic
TTGGATCCATGAAAGTTGGA+AGG 0.681916 4_1:+34231755 None:intergenic
AGATACCTCAATCTCACCAG+AGG 0.686383 4_1:+34231448 None:intergenic
ATGTCAACATCACCAATGGG+AGG 0.690189 4_1:-34227360 Msa0544930:CDS
ATGAAAACAAAATCACATGG+TGG 0.692742 4_1:-34232195 Msa0544930:five_prime_UTR
AAAATGAAAACAAAATCACA+TGG 0.701682 4_1:-34232198 Msa0544930:five_prime_UTR
AGTGGTGGAAGAGAAAACAA+TGG 0.709372 4_1:-34231221 Msa0544930:CDS
GATCCCCACATGTTATAGTG+GGG 0.711349 4_1:+34231653 None:intergenic
AAACTACGTACCTTACTCTG+AGG 0.712519 4_1:-34231927 Msa0544930:CDS
AATGCTTGGAGGCCTCAGAG+AGG 0.737120 4_1:-34229239 Msa0544930:CDS
GGAAATGAAAATCATCATGG+TGG 0.766816 4_1:-34227144 Msa0544930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTAATTTTCTTTTTAG+GGG + chr4_1:34230147-34230166 None:intergenic 10.0%
!!! CATTATTAATTTTCTTTTTA+GGG + chr4_1:34230148-34230167 None:intergenic 10.0%
!!! TCATTATTAATTTTCTTTTT+AGG + chr4_1:34230149-34230168 None:intergenic 10.0%
!!! ATTTTTATAAAAGTAATTTG+TGG + chr4_1:34231135-34231154 None:intergenic 10.0%
!! TACCCATAAATAAATTTAAT+TGG - chr4_1:34228930-34228949 Msa0544930:intron 15.0%
!! AGCCAATTAAATTTATTTAT+GGG + chr4_1:34228935-34228954 None:intergenic 15.0%
!! TAGCCAATTAAATTTATTTA+TGG + chr4_1:34228936-34228955 None:intergenic 15.0%
!!! TATTTTCAAGAAATAGTTAT+TGG - chr4_1:34229096-34229115 Msa0544930:intron 15.0%
!!! AGTTAAATTAACCATAATTT+TGG - chr4_1:34230339-34230358 Msa0544930:intron 15.0%
!! TATATCAAAATTTGTAAGTA+AGG + chr4_1:34230603-34230622 None:intergenic 15.0%
!! ATATAGAAAAATTAAGTACT+TGG - chr4_1:34230618-34230637 Msa0544930:intron 15.0%
!! TATTAACAATCAGATTAAAT+CGG + chr4_1:34230809-34230828 None:intergenic 15.0%
!! TATAAAGATGTACAAAAATT+TGG - chr4_1:34232591-34232610 Msa0544930:five_prime_UTR 15.0%
!! GAAAAAGTGAAAATAAAAAC+TGG - chr4_1:34226596-34226615 Msa0544930:three_prime_UTR 20.0%
!!! TGTTTGAAACAATTATTAAC+CGG - chr4_1:34226733-34226752 Msa0544930:three_prime_UTR 20.0%
!! TATTAATCATCTGATTCTTA+GGG + chr4_1:34226799-34226818 None:intergenic 20.0%
!! ATATTAATCATCTGATTCTT+AGG + chr4_1:34226800-34226819 None:intergenic 20.0%
!!! TTGTTTTCATTTTCATTACT+TGG + chr4_1:34226871-34226890 None:intergenic 20.0%
!! AAAATGAAAACAAAATCACA+TGG - chr4_1:34226878-34226897 Msa0544930:CDS 20.0%
!!! AAAAAAGAAAACCTTCTTTT+TGG + chr4_1:34226960-34226979 None:intergenic 20.0%
!! AATTCTTTAACGTGTAAATT+TGG + chr4_1:34226997-34227016 None:intergenic 20.0%
!!! AATTAACTTTCCACAAATTT+TGG - chr4_1:34227986-34228005 Msa0544930:intron 20.0%
!!! ATTAACTTTCCACAAATTTT+GGG - chr4_1:34227987-34228006 Msa0544930:intron 20.0%
!! AAAATATTTGTGTGAAAGTA+CGG - chr4_1:34228061-34228080 Msa0544930:intron 20.0%
!! TTTGTTGAAAATATATGTTG+AGG - chr4_1:34228349-34228368 Msa0544930:intron 20.0%
!! TATGGTAACATATTAACATA+AGG - chr4_1:34228808-34228827 Msa0544930:intron 20.0%
!! ATGGTAACATATTAACATAA+GGG - chr4_1:34228809-34228828 Msa0544930:intron 20.0%
!! TATTCATGCAAATCTAAATT+AGG + chr4_1:34229138-34229157 None:intergenic 20.0%
!! TGGAGTAATTTAAATACTTA+CGG + chr4_1:34229921-34229940 None:intergenic 20.0%
!!! TATTGATTTGTGCAAAATTA+TGG - chr4_1:34230257-34230276 Msa0544930:intron 20.0%
!! TTAATTCACAACCAAAATTA+TGG + chr4_1:34230353-34230372 None:intergenic 20.0%
!!! ATTTTTTAACGTGATAATTG+AGG - chr4_1:34230403-34230422 Msa0544930:intron 20.0%
!!! TTAAAAGTACAGAAATAGAT+TGG + chr4_1:34230746-34230765 None:intergenic 20.0%
!!! AATCTATTTCTGTACTTTTA+AGG - chr4_1:34230745-34230764 Msa0544930:intron 20.0%
!! CATCTTTGTATTATTGTAAT+GGG + chr4_1:34230894-34230913 None:intergenic 20.0%
!! TTTGACAACAATAATTCTAA+AGG - chr4_1:34231333-34231352 Msa0544930:CDS 20.0%
!! ACAAATAGATCAAAAGAATT+AGG - chr4_1:34231593-34231612 Msa0544930:CDS 20.0%
!!! ATTAATTTGATCAAGTTTTG+CGG + chr4_1:34231621-34231640 None:intergenic 20.0%
!! CAAAATCACATATAATTTCT+AGG + chr4_1:34232272-34232291 None:intergenic 20.0%
!! AAGGTATACATACTTTAATA+TGG - chr4_1:34232420-34232439 Msa0544930:intron 20.0%
!! TACATACTTTAATATGGTAT+TGG - chr4_1:34232426-34232445 Msa0544930:intron 20.0%
!! AGAAAGATTAATGGAACTTT+TGG + chr4_1:34226500-34226519 None:intergenic 25.0%
! TGCAATTAATTAGTAGACAA+AGG + chr4_1:34226559-34226578 None:intergenic 25.0%
! GTCTACTAATTAATTGCAAA+TGG - chr4_1:34226561-34226580 Msa0544930:three_prime_UTR 25.0%
! GGTTAATAATTGTTTCAAAC+AGG + chr4_1:34226734-34226753 None:intergenic 25.0%
! ATTAATCATCTGATTCTTAG+GGG + chr4_1:34226798-34226817 None:intergenic 25.0%
!!! TTTATTTTGCCATGATTTTC+AGG - chr4_1:34226831-34226850 Msa0544930:CDS 25.0%
!! TTTTCATTTTCATTACTTGG+TGG + chr4_1:34226868-34226887 None:intergenic 25.0%
! AGAATTAATTCTGACAGATA+TGG - chr4_1:34227038-34227057 Msa0544930:CDS 25.0%
!! AATATTGAATCTAGTTCAAG+TGG - chr4_1:34227837-34227856 Msa0544930:intron 25.0%
! CGGTACATATTTATTAATTG+TGG - chr4_1:34228081-34228100 Msa0544930:intron 25.0%
!! GTCTTTAAAAACAAAAGTTG+AGG - chr4_1:34228217-34228236 Msa0544930:intron 25.0%
! TGAAAATATATGTTGAGGAA+AGG - chr4_1:34228354-34228373 Msa0544930:intron 25.0%
! GAAAATATATGTTGAGGAAA+GGG - chr4_1:34228355-34228374 Msa0544930:intron 25.0%
! AATGTCAGAGAGAATAATTT+GGG - chr4_1:34228413-34228432 Msa0544930:intron 25.0%
! ACTCACATAAGAAAGAAATT+TGG + chr4_1:34228596-34228615 None:intergenic 25.0%
! TAAGCACATATGACATATTA+AGG - chr4_1:34228653-34228672 Msa0544930:intron 25.0%
! AAGCACATATGACATATTAA+GGG - chr4_1:34228654-34228673 Msa0544930:intron 25.0%
! ATATGACATATTAAGGGAAA+TGG - chr4_1:34228660-34228679 Msa0544930:intron 25.0%
! AGTAATAGTTTCATTGTAGA+AGG - chr4_1:34229263-34229282 Msa0544930:CDS 25.0%
! GGAGTAATTTAAATACTTAC+GGG + chr4_1:34229920-34229939 None:intergenic 25.0%
! ATAACTCTAGACTTATAGAA+TGG + chr4_1:34229941-34229960 None:intergenic 25.0%
!! TTATGAATCAAAAGCTTGTT+TGG + chr4_1:34230006-34230025 None:intergenic 25.0%
! TAATAATGACACGTTCTTAA+TGG - chr4_1:34230160-34230179 Msa0544930:intron 25.0%
! TTATTAACTTACGTTGTACA+AGG - chr4_1:34230858-34230877 Msa0544930:intron 25.0%
! TATTAACTTACGTTGTACAA+GGG - chr4_1:34230859-34230878 Msa0544930:intron 25.0%
! CCATCTTTGTATTATTGTAA+TGG + chr4_1:34230895-34230914 None:intergenic 25.0%
! CCATTACAATAATACAAAGA+TGG - chr4_1:34230892-34230911 Msa0544930:intron 25.0%
! TACAATAATACAAAGATGGT+AGG - chr4_1:34230896-34230915 Msa0544930:intron 25.0%
! ACAATAATACAAAGATGGTA+GGG - chr4_1:34230897-34230916 Msa0544930:intron 25.0%
!!! AGAATTTTGTTTCAATCGAA+AGG - chr4_1:34230991-34231010 Msa0544930:intron 25.0%
!!! GAATTTTGTTTCAATCGAAA+GGG - chr4_1:34230992-34231011 Msa0544930:intron 25.0%
! ACATATCAATTCTACAAAAG+TGG + chr4_1:34231073-34231092 None:intergenic 25.0%
!! CAAAATCACAGGATTTTAAA+GGG + chr4_1:34231188-34231207 None:intergenic 25.0%
!! ACAAAATCACAGGATTTTAA+AGG + chr4_1:34231189-34231208 None:intergenic 25.0%
!! TAAAATCCTGTGATTTTGTA+TGG - chr4_1:34231190-34231209 Msa0544930:CDS 25.0%
!! AAAATCCTGTGATTTTGTAT+GGG - chr4_1:34231191-34231210 Msa0544930:CDS 25.0%
!! TACTAAGATTTTGCCTATTT+TGG - chr4_1:34231235-34231254 Msa0544930:CDS 25.0%
!! ACTAAGATTTTGCCTATTTT+GGG - chr4_1:34231236-34231255 Msa0544930:CDS 25.0%
!!! TCTCTTTAAGTTTTTAATGC+AGG - chr4_1:34231460-34231479 Msa0544930:CDS 25.0%
! TGATGTTGACATTGAATTAT+TGG + chr4_1:34231708-34231727 None:intergenic 25.0%
! TTTCATTTCCACTCAATAAA+GGG + chr4_1:34231922-34231941 None:intergenic 25.0%
!! TTTTCATTTCCACTCAATAA+AGG + chr4_1:34231923-34231942 None:intergenic 25.0%
!! AGAGGAATATTTTCATTATG+AGG + chr4_1:34232061-34232080 None:intergenic 25.0%
! TTGATATTGAAAACAGAAAG+AGG - chr4_1:34232215-34232234 Msa0544930:five_prime_UTR 25.0%
! TTATATAATAAGCGTCTGTT+TGG + chr4_1:34232365-34232384 None:intergenic 25.0%
! AATACAAATTACATTCATGC+AGG + chr4_1:34232535-34232554 None:intergenic 25.0%
!! GCATGAATGTAATTTGTATT+TGG - chr4_1:34232535-34232554 Msa0544930:five_prime_UTR 25.0%
!! TTGCTAGCTCTATTATGATT+GGG + chr4_1:34226457-34226476 None:intergenic 30.0%
!! ATTGCTAGCTCTATTATGAT+TGG + chr4_1:34226458-34226477 None:intergenic 30.0%
! AGATTAATGGAACTTTTGGA+GGG + chr4_1:34226496-34226515 None:intergenic 30.0%
! AAGATTAATGGAACTTTTGG+AGG + chr4_1:34226497-34226516 None:intergenic 30.0%
ATGAAAACAAAATCACATGG+TGG - chr4_1:34226881-34226900 Msa0544930:CDS 30.0%
!! AAGCTTGTTAATTTGAAGCT+TGG + chr4_1:34226916-34226935 None:intergenic 30.0%
ACACACATAAACCAAAAAGA+AGG - chr4_1:34226946-34226965 Msa0544930:CDS 30.0%
TAACGTGTAAATTTGGATTG+TGG + chr4_1:34226990-34227009 None:intergenic 30.0%
! CACGTTAAAGAATTTTCGTA+CGG - chr4_1:34227003-34227022 Msa0544930:CDS 30.0%
! ATGTTTTGTGTTGGATTTTG+TGG + chr4_1:34227177-34227196 None:intergenic 30.0%
GTAATAACAACAAAGAGAAG+AGG - chr4_1:34227808-34227827 Msa0544930:intron 30.0%
TATTGAAAGCCCAAAATTTG+TGG + chr4_1:34227999-34228018 None:intergenic 30.0%
GAATGTCAGAGAGAATAATT+TGG - chr4_1:34228412-34228431 Msa0544930:intron 30.0%
! AACATGAAACTGACTCAATT+GGG + chr4_1:34228444-34228463 None:intergenic 30.0%
! AAACATGAAACTGACTCAAT+TGG + chr4_1:34228445-34228464 None:intergenic 30.0%
TCTCACTCTCAATCAATAAT+GGG + chr4_1:34228497-34228516 None:intergenic 30.0%
ATTCATAAACACACTCATGA+TGG - chr4_1:34228568-34228587 Msa0544930:intron 30.0%
TTCATAAACACACTCATGAT+GGG - chr4_1:34228569-34228588 Msa0544930:intron 30.0%
AGATCTAACAATCTTCAAAG+TGG + chr4_1:34228713-34228732 None:intergenic 30.0%
!! TTATTTTACCATGGATTTGC+CGG - chr4_1:34228777-34228796 Msa0544930:intron 30.0%
! ATTTTCGTGATTCATTCTTG+AGG - chr4_1:34228961-34228980 Msa0544930:intron 30.0%
TAGCAGTCATCTTAACATAA+TGG - chr4_1:34229000-34229019 Msa0544930:intron 30.0%
AAAATAACAACGTTGATCTG+AGG + chr4_1:34229039-34229058 None:intergenic 30.0%
! AATTTTGTCAAACTCACTAC+AGG - chr4_1:34229438-34229457 Msa0544930:CDS 30.0%
!!! ACTCTTGTTTTGAACAATGT+AGG - chr4_1:34229524-34229543 Msa0544930:CDS 30.0%
ATATCACACTTTGCATTTGA+TGG + chr4_1:34229575-34229594 None:intergenic 30.0%
!! TTTTCAAGAATGCCACTTAA+TGG + chr4_1:34229966-34229985 None:intergenic 30.0%
TGCATGACTTGACAAATAAA+AGG - chr4_1:34230184-34230203 Msa0544930:intron 30.0%
CAACGTAAGTTAATAACAAG+AGG + chr4_1:34230854-34230873 None:intergenic 30.0%
ATTAACTTACGTTGTACAAG+GGG - chr4_1:34230860-34230879 Msa0544930:intron 30.0%
CAATAATACAAAGATGGTAG+GGG - chr4_1:34230898-34230917 Msa0544930:intron 30.0%
AATAATACAAAGATGGTAGG+GGG - chr4_1:34230899-34230918 Msa0544930:intron 30.0%
AAAATCGCAATCAAAATCGA+AGG - chr4_1:34231036-34231055 Msa0544930:intron 30.0%
!! AGGATTTTAAAGGGTTTTGA+AGG + chr4_1:34231179-34231198 None:intergenic 30.0%
TAAAACCCATACAAAATCAC+AGG + chr4_1:34231199-34231218 None:intergenic 30.0%
TGAATAAAGTCTCAAAATCC+TGG - chr4_1:34231288-34231307 Msa0544930:CDS 30.0%
! TCTCAAAATCCTGGATTTTA+GGG - chr4_1:34231297-34231316 Msa0544930:CDS 30.0%
! CTGATTTTGTATTCTCAAAC+TGG + chr4_1:34231368-34231387 None:intergenic 30.0%
! TTTTAATGCAGGTATCTAAC+TGG - chr4_1:34231471-34231490 Msa0544930:CDS 30.0%
AAGTACATTTCTTCAACCAT+TGG + chr4_1:34231527-34231546 None:intergenic 30.0%
AATGGTTGAAGAAATGTACT+TGG - chr4_1:34231526-34231545 Msa0544930:CDS 30.0%
TGATCTATTTGTGTTATCCT+TGG + chr4_1:34231585-34231604 None:intergenic 30.0%
AATGAATACCCTTTATTGAG+TGG - chr4_1:34231911-34231930 Msa0544930:CDS 30.0%
AGTGGAAATGAAAATCATCA+TGG - chr4_1:34231929-34231948 Msa0544930:CDS 30.0%
CTCTCTCAGAATTTACATTT+AGG - chr4_1:34232103-34232122 Msa0544930:five_prime_UTR 30.0%
TCTCAGAATTTACATTTAGG+AGG - chr4_1:34232106-34232125 Msa0544930:five_prime_UTR 30.0%
CTCAGAATTTACATTTAGGA+GGG - chr4_1:34232107-34232126 Msa0544930:five_prime_UTR 30.0%
!! TAATTTGTTCCTGAATGAGA+AGG + chr4_1:34232187-34232206 None:intergenic 30.0%
TTGAAGTTTCAACAAAATCC+TGG - chr4_1:34232306-34232325 Msa0544930:intron 30.0%
!! TTATAAGACTCAAGTTGAGT+TGG - chr4_1:34232385-34232404 Msa0544930:intron 30.0%
! ATGGTATTGGAAAATTAACC+AGG - chr4_1:34232439-34232458 Msa0544930:intron 30.0%
AGATATGAAAGTGATGTGTA+TGG - chr4_1:34232626-34232645 Msa0544930:five_prime_UTR 30.0%
GATATGAAAGTGATGTGTAT+GGG - chr4_1:34232627-34232646 Msa0544930:five_prime_UTR 30.0%
!! TGCTAGCTCTATTATGATTG+GGG + chr4_1:34226456-34226475 None:intergenic 35.0%
GAAGAAAAAAGTAGCTAGCA+AGG + chr4_1:34226683-34226702 None:intergenic 35.0%
GATTTCAAGCAAGTAAAGTC+CGG + chr4_1:34226755-34226774 None:intergenic 35.0%
GATGTTGATCCTGAAAATCA+TGG + chr4_1:34226843-34226862 None:intergenic 35.0%
GTACGTAGTTTGGATTCATA+AGG + chr4_1:34227140-34227159 None:intergenic 35.0%
GAAACTTCATATGGTTGTGT+AGG + chr4_1:34227360-34227379 None:intergenic 35.0%
!! TATGAAAACCAATTTGCTGC+GGG + chr4_1:34227545-34227564 None:intergenic 35.0%
!! CTATGAAAACCAATTTGCTG+CGG + chr4_1:34227546-34227565 None:intergenic 35.0%
!!! ACCATGAACGGTGTTATTTT+TGG - chr4_1:34227690-34227709 Msa0544930:intron 35.0%
TCTTGATGAAGTTGTGAATG+TGG - chr4_1:34227743-34227762 Msa0544930:intron 35.0%
TGAAGTTGTGAATGTGGATA+AGG - chr4_1:34227749-34227768 Msa0544930:intron 35.0%
GAAGTTGTGAATGTGGATAA+GGG - chr4_1:34227750-34227769 Msa0544930:intron 35.0%
AATCATCAAAGGAGAATCTG+TGG - chr4_1:34227773-34227792 Msa0544930:intron 35.0%
! ATTGAATCTAGTTCAAGTGG+TGG - chr4_1:34227840-34227859 Msa0544930:intron 35.0%
TAAAGATTGAGACAAGCCAA+AGG - chr4_1:34228282-34228301 Msa0544930:intron 35.0%
TCAGAGAGAATAATTTGGGT+CGG - chr4_1:34228417-34228436 Msa0544930:intron 35.0%
!! CAATCAATAATGGGTTCACT+TGG + chr4_1:34228488-34228507 None:intergenic 35.0%
CTCTCACTCTCAATCAATAA+TGG + chr4_1:34228498-34228517 None:intergenic 35.0%
! CATTATTGATTGAGAGTGAG+AGG - chr4_1:34228496-34228515 Msa0544930:intron 35.0%
TCCATGGTAAAATAAGTGCA+GGG + chr4_1:34228772-34228791 None:intergenic 35.0%
ATCCATGGTAAAATAAGTGC+AGG + chr4_1:34228773-34228792 None:intergenic 35.0%
ATGATATGTATAGCGAGGAA+TGG - chr4_1:34228834-34228853 Msa0544930:intron 35.0%
TGATATGTATAGCGAGGAAT+GGG - chr4_1:34228835-34228854 Msa0544930:intron 35.0%
ATTTCCATTCGCGATGATTT+CGG + chr4_1:34228864-34228883 None:intergenic 35.0%
CAACACTTTAAGTGCATGAT+CGG + chr4_1:34229465-34229484 None:intergenic 35.0%
GTGTTAAGTTAGAAGGTTCT+AGG - chr4_1:34229748-34229767 Msa0544930:intron 35.0%
GAATGATTCATAGCAATGCT+TGG - chr4_1:34229823-34229842 Msa0544930:intron 35.0%
CTAGAGTTATGTCCATTAAG+TGG - chr4_1:34229951-34229970 Msa0544930:intron 35.0%
! ATAATTGAGGTGTCTGTGTT+TGG - chr4_1:34230416-34230435 Msa0544930:intron 35.0%
TCTTGCAAGCATAACCTTAT+CGG + chr4_1:34230692-34230711 None:intergenic 35.0%
!!! TTCTGTACTTTTAAGGCTGT+TGG - chr4_1:34230752-34230771 Msa0544930:intron 35.0%
ACTACTGAGACATTGTAACA+AGG - chr4_1:34230957-34230976 Msa0544930:intron 35.0%
CTATAGCAGAATCCCAAAAT+AGG + chr4_1:34231251-34231270 None:intergenic 35.0%
CTATAGATTTGAGTCGTTGA+AGG - chr4_1:34231265-34231284 Msa0544930:CDS 35.0%
! GTCTCAAAATCCTGGATTTT+AGG - chr4_1:34231296-34231315 Msa0544930:CDS 35.0%
!!! CTGGATTTTAGGGTTTAAGT+CGG - chr4_1:34231307-34231326 Msa0544930:CDS 35.0%
!!! TGGATTTTAGGGTTTAAGTC+GGG - chr4_1:34231308-34231327 Msa0544930:CDS 35.0%
AGAGAGTAAAACACCTCTAA+AGG + chr4_1:34231445-34231464 None:intergenic 35.0%
AATGTACTTGGAAGAAACCA+AGG - chr4_1:34231538-34231557 Msa0544930:CDS 35.0%
TTGAAATCACTGTTGGAGAA+AGG + chr4_1:34231682-34231701 None:intergenic 35.0%
TTGGAACTTGAAATCACTGT+TGG + chr4_1:34231689-34231708 None:intergenic 35.0%
TTCAATGTCAACATCACCAA+TGG - chr4_1:34231712-34231731 Msa0544930:CDS 35.0%
TCAATGTCAACATCACCAAT+GGG - chr4_1:34231713-34231732 Msa0544930:CDS 35.0%
GAAACCAGAATTGGATTGAA+AGG + chr4_1:34231753-34231772 None:intergenic 35.0%
TGAAAGGAAACTACCTTGAT+GGG + chr4_1:34231819-34231838 None:intergenic 35.0%
TTGAAAGGAAACTACCTTGA+TGG + chr4_1:34231820-34231839 None:intergenic 35.0%
TCAAGGTAGTTTCCTTTCAA+TGG - chr4_1:34231820-34231839 Msa0544930:CDS 35.0%
TAGTTTCCTTTCAATGGACA+TGG - chr4_1:34231826-34231845 Msa0544930:CDS 35.0%
TCAATTCCATGTCCATTGAA+AGG + chr4_1:34231835-34231854 None:intergenic 35.0%
GGAAATGAAAATCATCATGG+TGG - chr4_1:34231932-34231951 Msa0544930:CDS 35.0%
AATGAAAATCATCATGGTGG+TGG - chr4_1:34231935-34231954 Msa0544930:CDS 35.0%
TGGTTATGGATCATTCTCAA+TGG - chr4_1:34231955-34231974 Msa0544930:CDS 35.0%
TCTCAATGGAAGATGTTAGA+AGG - chr4_1:34231969-34231988 Msa0544930:CDS 35.0%
TTAGAGAAACACCATTTCCA+TGG + chr4_1:34232027-34232046 None:intergenic 35.0%
AATGGTGTTTCTCTAACTCT+TGG - chr4_1:34232031-34232050 Msa0544930:exon 35.0%
AAGTTTCAACAAAATCCTGG+TGG - chr4_1:34232309-34232328 Msa0544930:intron 35.0%
!! CAAGTTGAGTTGGATTAAGT+TGG - chr4_1:34232395-34232414 Msa0544930:intron 35.0%
!! GAGTTGGATTAAGTTGGAAA+AGG - chr4_1:34232401-34232420 Msa0544930:intron 35.0%
GGAAAATTAACCAGGTATGT+AGG - chr4_1:34232447-34232466 Msa0544930:intron 35.0%
ATTTGGTTAGTACGTAGATG+TGG - chr4_1:34232552-34232571 Msa0544930:five_prime_UTR 35.0%
! GATGTGGTGGAAATCATTAA+AGG - chr4_1:34232568-34232587 Msa0544930:five_prime_UTR 35.0%
AAAGTGATGTGTATGGGATT+TGG - chr4_1:34232633-34232652 Msa0544930:five_prime_UTR 35.0%
TTCCACACGCAAAATTCACT+TGG - chr4_1:34226405-34226424 Msa0544930:three_prime_UTR 40.0%
! TAGCTCTATTATGATTGGGG+TGG + chr4_1:34226453-34226472 None:intergenic 40.0%
!! AATGGAACTTTTGGAGGGTT+TGG + chr4_1:34226491-34226510 None:intergenic 40.0%
AGGAGGGGAAGAAAGATTAA+TGG + chr4_1:34226509-34226528 None:intergenic 40.0%
GATATGGCAACGTACTTTCA+TGG - chr4_1:34227054-34227073 Msa0544930:CDS 40.0%
TCAGAGTAAGGTACGTAGTT+TGG + chr4_1:34227150-34227169 None:intergenic 40.0%
AAACTACGTACCTTACTCTG+AGG - chr4_1:34227149-34227168 Msa0544930:CDS 40.0%
! TTTTGTGGTTCCTCAGAGTA+AGG + chr4_1:34227162-34227181 None:intergenic 40.0%
!! GCGAAAAGCATGTTTTGTGT+TGG + chr4_1:34227186-34227205 None:intergenic 40.0%
! CTATTGTTAGTGGTAGCGTT+GGG + chr4_1:34227213-34227232 None:intergenic 40.0%
! ACTATTGTTAGTGGTAGCGT+TGG + chr4_1:34227214-34227233 None:intergenic 40.0%
!! GGGAGAAGTACTATTGTTAG+TGG + chr4_1:34227223-34227242 None:intergenic 40.0%
!! TGGTGTTGATTGAGTGATGA+AGG + chr4_1:34227279-34227298 None:intergenic 40.0%
GAATAGTAACTCCAAGCAAG+TGG + chr4_1:34227299-34227318 None:intergenic 40.0%
ATTCCACCTTCCAACTTTCA+TGG - chr4_1:34227315-34227334 Msa0544930:CDS 40.0%
TTGGATCCATGAAAGTTGGA+AGG + chr4_1:34227324-34227343 None:intergenic 40.0%
! AGTGTTGGATCCATGAAAGT+TGG + chr4_1:34227328-34227347 None:intergenic 40.0%
! ATATGGTTGTGTAGGAGTGT+CGG + chr4_1:34227352-34227371 None:intergenic 40.0%
TGGAAGGTGGAAACTTCATA+TGG + chr4_1:34227369-34227388 None:intergenic 40.0%
! CTTCCATCCATTTTCCTCTT+CGG - chr4_1:34227383-34227402 Msa0544930:CDS 40.0%
TGATCCCCACATGTTATAGT+GGG + chr4_1:34227427-34227446 None:intergenic 40.0%
GCCAAAAATAACACCGTTCA+TGG + chr4_1:34227694-34227713 None:intergenic 40.0%
GTGGATAAGGGAATCATCAA+AGG - chr4_1:34227762-34227781 Msa0544930:intron 40.0%
ATCAAAGGAGAATCTGTGGA+AGG - chr4_1:34227777-34227796 Msa0544930:intron 40.0%
! AGTGGTGGAAGAGAAAACAA+TGG - chr4_1:34227855-34227874 Msa0544930:intron 40.0%
GTGGAAGAGAAAACAATGGA+GGG - chr4_1:34227859-34227878 Msa0544930:intron 40.0%
TCCTGTCAATTTCTGTCCTT+TGG + chr4_1:34228301-34228320 None:intergenic 40.0%
AGCAAAAAAGCCACTTGATC+TGG - chr4_1:34228388-34228407 Msa0544930:CDS 40.0%
CAGAGAGAATAATTTGGGTC+GGG - chr4_1:34228418-34228437 Msa0544930:intron 40.0%
GAGAGTGAGAGGAAAAGTAA+AGG - chr4_1:34228507-34228526 Msa0544930:intron 40.0%
GATCACATACAACAGCTGTA+TGG - chr4_1:34228682-34228701 Msa0544930:intron 40.0%
!!! TCCCTGCACTTATTTTACCA+TGG - chr4_1:34228768-34228787 Msa0544930:intron 40.0%
ATGTTACCATAGATCCACTC+CGG + chr4_1:34228799-34228818 None:intergenic 40.0%
GGGAAATGATATGTATAGCG+AGG - chr4_1:34228829-34228848 Msa0544930:intron 40.0%
CGAATGGAAATATCATGACG+TGG - chr4_1:34228873-34228892 Msa0544930:intron 40.0%
TTATGGGTAGAAAACACGCT+AGG + chr4_1:34228919-34228938 None:intergenic 40.0%
GAACAATGTAGGTAGAGCTA+AGG - chr4_1:34229535-34229554 Msa0544930:intron 40.0%
TCACACTTTGCATTTGATGG+TGG + chr4_1:34229572-34229591 None:intergenic 40.0%
TCATCATTTGAGCAAGCAAC+AGG - chr4_1:34229594-34229613 Msa0544930:intron 40.0%
TTTGAGCAAGCAACAGGATA+TGG - chr4_1:34229600-34229619 Msa0544930:intron 40.0%
TGAGATTGTCTTCAAGGCTA+GGG + chr4_1:34229646-34229665 None:intergenic 40.0%
TTGAGATTGTCTTCAAGGCT+AGG + chr4_1:34229647-34229666 None:intergenic 40.0%
!! CTGCTTTGAGATTGTCTTCA+AGG + chr4_1:34229652-34229671 None:intergenic 40.0%
TAAGACAGCTAGCAAGACTT+TGG - chr4_1:34229707-34229726 Msa0544930:intron 40.0%
AAGACAGCTAGCAAGACTTT+GGG - chr4_1:34229708-34229727 Msa0544930:intron 40.0%
TTTGGGTGAAGATGATTGCT+TGG - chr4_1:34229725-34229744 Msa0544930:intron 40.0%
TTGGGTGAAGATGATTGCTT+GGG - chr4_1:34229726-34229745 Msa0544930:intron 40.0%
TGCTTGGGTGTTAAGTTAGA+AGG - chr4_1:34229741-34229760 Msa0544930:intron 40.0%
!! AGTTAGAAGGTTCTAGGCTT+CGG - chr4_1:34229754-34229773 Msa0544930:intron 40.0%
TGATTCATAGCAATGCTTGG+AGG - chr4_1:34229826-34229845 Msa0544930:intron 40.0%
AGAACAGAAACAGCTCTTTC+AGG + chr4_1:34229867-34229886 None:intergenic 40.0%
ATAACCTTATCGGAGTCCTT+GGG + chr4_1:34230682-34230701 None:intergenic 40.0%
GTTATGCTTGCAAGACAAAC+TGG - chr4_1:34230697-34230716 Msa0544930:intron 40.0%
CAAGACAAACTGGACTTACT+AGG - chr4_1:34230707-34230726 Msa0544930:intron 40.0%
CGACTTAAACCCTAAAATCC+AGG + chr4_1:34231309-34231328 None:intergenic 40.0%
GCTAATTAGCAAGAGGGATA+TGG + chr4_1:34231394-34231413 None:intergenic 40.0%
GAACTGGCTAATTAGCAAGA+GGG + chr4_1:34231400-34231419 None:intergenic 40.0%
TGAACTGGCTAATTAGCAAG+AGG + chr4_1:34231401-34231420 None:intergenic 40.0%
CTCAAGCTCTATCATTGAAC+TGG + chr4_1:34231416-34231435 None:intergenic 40.0%
CAATGATAGAGCTTGAGTCT+TGG - chr4_1:34231419-34231438 Msa0544930:CDS 40.0%
! TCACTGTTGGAGAAAGGTTT+TGG + chr4_1:34231676-34231695 None:intergenic 40.0%
TGCAAGATGGAAACCAGAAT+TGG + chr4_1:34231762-34231781 None:intergenic 40.0%
!! AATTCTGGTTTCCATCTTGC+AGG - chr4_1:34231761-34231780 Msa0544930:CDS 40.0%
AGTCCAAAAAACTCCCATCA+AGG - chr4_1:34231803-34231822 Msa0544930:CDS 40.0%
!!! CTACCTTGATGGGAGTTTTT+TGG + chr4_1:34231809-34231828 None:intergenic 40.0%
TTCAACTTCAAACTCTGTGG+TGG + chr4_1:34231873-34231892 None:intergenic 40.0%
CCTTTCAACTTCAAACTCTG+TGG + chr4_1:34231876-34231895 None:intergenic 40.0%
! CCACAGAGTTTGAAGTTGAA+AGG - chr4_1:34231873-34231892 Msa0544930:CDS 40.0%
!! AATCATCATGGTGGTGGTTA+TGG - chr4_1:34231941-34231960 Msa0544930:CDS 40.0%
TTAGTGAGCAATTAGCTCCT+AGG - chr4_1:34231999-34232018 Msa0544930:CDS 40.0%
CTGAGAGAGAAATCCATGTT+GGG + chr4_1:34232092-34232111 None:intergenic 40.0%
TCTGAGAGAGAAATCCATGT+TGG + chr4_1:34232093-34232112 None:intergenic 40.0%
! ATGAGAAGGAGTAGTGTTGA+TGG + chr4_1:34232173-34232192 None:intergenic 40.0%
AACACTACTCCTTCTCATTC+AGG - chr4_1:34232175-34232194 Msa0544930:five_prime_UTR 40.0%
TCATTCAACTCCTACATACC+TGG + chr4_1:34232460-34232479 None:intergenic 40.0%
! GTCCAAGTGAATTTTGCGTG+TGG + chr4_1:34226410-34226429 None:intergenic 45.0%
AGTAGACAAAGGCAGCTACA+AGG + chr4_1:34226548-34226567 None:intergenic 45.0%
!! CAGTTCTGAAATCCAACCGT+CGG - chr4_1:34227092-34227111 Msa0544930:CDS 45.0%
GTCTGTAAACCTTCTACCGA+CGG + chr4_1:34227111-34227130 None:intergenic 45.0%
CTCAATCAACACCACTTGCT+TGG - chr4_1:34227285-34227304 Msa0544930:CDS 45.0%
GATCCATGAAAGTTGGAAGG+TGG + chr4_1:34227321-34227340 None:intergenic 45.0%
AGAGGAAAATGGATGGAAGG+TGG + chr4_1:34227382-34227401 None:intergenic 45.0%
CGAAGAGGAAAATGGATGGA+AGG + chr4_1:34227385-34227404 None:intergenic 45.0%
TAGCCGAAGAGGAAAATGGA+TGG + chr4_1:34227389-34227408 None:intergenic 45.0%
TCGTCCCCACTATAACATGT+GGG - chr4_1:34227419-34227438 Msa0544930:CDS 45.0%
GATCCCCACATGTTATAGTG+GGG + chr4_1:34227426-34227445 None:intergenic 45.0%
CTGATCCCCACATGTTATAG+TGG + chr4_1:34227428-34227447 None:intergenic 45.0%
CACTATAACATGTGGGGATC+AGG - chr4_1:34227426-34227445 Msa0544930:CDS 45.0%
CATAGACCAGTTTATCAGCG+TGG - chr4_1:34227561-34227580 Msa0544930:CDS 45.0%
GACAAACCACGCTGATAAAC+TGG + chr4_1:34227570-34227589 None:intergenic 45.0%
AGATACCTCAATCTCACCAG+AGG + chr4_1:34227631-34227650 None:intergenic 45.0%
! TGGTGAGATTGAGGTATCTC+CGG - chr4_1:34227632-34227651 Msa0544930:intron 45.0%
AAAGGAGAATCTGTGGAAGG+AGG - chr4_1:34227780-34227799 Msa0544930:intron 45.0%
GGTGGAAGAGAAAACAATGG+AGG - chr4_1:34227858-34227877 Msa0544930:intron 45.0%
! GCTTGTTAGCATGCTAGATG+AGG - chr4_1:34227941-34227960 Msa0544930:intron 45.0%
GCCAAAGGACAGAAATTGAC+AGG - chr4_1:34228297-34228316 Msa0544930:intron 45.0%
CTGACATTCACCAGATCAAG+TGG + chr4_1:34228401-34228420 None:intergenic 45.0%
GAAGGAATGCACAACTCACA+TGG - chr4_1:34229281-34229300 Msa0544930:CDS 45.0%
!! CTGTTTCTGTTCTTCGTGCT+TGG - chr4_1:34229874-34229893 Msa0544930:intron 45.0%
TACACACACACACACACACA+CGG + chr4_1:34230493-34230512 None:intergenic 45.0%
TTATCCCAAGGACTCCGATA+AGG - chr4_1:34230675-34230694 Msa0544930:intron 45.0%
CATAACCTTATCGGAGTCCT+TGG + chr4_1:34230683-34230702 None:intergenic 45.0%
AACTGGACTTACTAGGAGTC+AGG - chr4_1:34230714-34230733 Msa0544930:intron 45.0%
AGTTCGCTTGTGGAAACCAA+TGG - chr4_1:34231508-34231527 Msa0544930:CDS 45.0%
GTTATTCTCCTCTTGCTCCT+TGG + chr4_1:34231558-34231577 None:intergenic 45.0%
AGAGGAGAATAACGACTCCA+AGG - chr4_1:34231565-34231584 Msa0544930:CDS 45.0%
ATGTCAACATCACCAATGGG+AGG - chr4_1:34231716-34231735 Msa0544930:CDS 45.0%
GGGTCCTTTCAATCCAATTC+TGG - chr4_1:34231746-34231765 Msa0544930:CDS 45.0%
CATCAGATGATCCTGCAAGA+TGG + chr4_1:34231775-34231794 None:intergenic 45.0%
CAGGATCATCTGATGTGCAA+AGG - chr4_1:34231780-34231799 Msa0544930:CDS 45.0%
CAATTAGCTCCTAGGTTCCA+TGG - chr4_1:34232007-34232026 Msa0544930:CDS 45.0%
ACACCATTTCCATGGAACCT+AGG + chr4_1:34232019-34232038 None:intergenic 45.0%
AGGAGGGACGATTGATGAAA+TGG - chr4_1:34232123-34232142 Msa0544930:five_prime_UTR 45.0%
GGAGGGACGATTGATGAAAT+GGG - chr4_1:34232124-34232143 Msa0544930:five_prime_UTR 45.0%
GATTTCGTCAAACTCAGCGT+TGG - chr4_1:34232338-34232357 Msa0544930:intron 45.0%
TGGTTAGTACGTAGATGTGG+TGG - chr4_1:34232555-34232574 Msa0544930:five_prime_UTR 45.0%
!! TTGATAAAAAAAAAAAAAAA+AGG + chr4_1:34230083-34230102 None:intergenic 5.0%
GACAAAGGCAGCTACAAGGA+TGG + chr4_1:34226544-34226563 None:intergenic 50.0%
GAAATCCAACCGTCGGTAGA+AGG - chr4_1:34227099-34227118 Msa0544930:CDS 50.0%
GTAAACCTTCTACCGACGGT+TGG + chr4_1:34227107-34227126 None:intergenic 50.0%
TTGAATCCATGAAGCGCGTG+GGG + chr4_1:34227243-34227262 None:intergenic 50.0%
CTTGAATCCATGAAGCGCGT+GGG + chr4_1:34227244-34227263 None:intergenic 50.0%
ACTTGAATCCATGAAGCGCG+TGG + chr4_1:34227245-34227264 None:intergenic 50.0%
!! TGTAGGAGTGTCGGTAGTGT+TGG + chr4_1:34227343-34227362 None:intergenic 50.0%
ACGGTAGCCGAAGAGGAAAA+TGG + chr4_1:34227393-34227412 None:intergenic 50.0%
! CACATGTTATAGTGGGGACG+AGG + chr4_1:34227420-34227439 None:intergenic 50.0%
CTCGTCCCCACTATAACATG+TGG - chr4_1:34227418-34227437 Msa0544930:CDS 50.0%
CGTCCCCACTATAACATGTG+GGG - chr4_1:34227420-34227439 Msa0544930:CDS 50.0%
GTTGCTGTGACAGCGTTATC+AGG + chr4_1:34227462-34227481 None:intergenic 50.0%
! GGTGAGATTGAGGTATCTCC+GGG - chr4_1:34227633-34227652 Msa0544930:intron 50.0%
GGTGGAGTTTCGACCATGAA+CGG - chr4_1:34227678-34227697 Msa0544930:intron 50.0%
TTACCATGGATTTGCCGGAG+TGG - chr4_1:34228782-34228801 Msa0544930:intron 50.0%
GATTTGCCGGAGTGGATCTA+TGG - chr4_1:34228790-34228809 Msa0544930:intron 50.0%
GATGCCGAAATCATCGCGAA+TGG - chr4_1:34228857-34228876 Msa0544930:intron 50.0%
TGGGTAGAAAACACGCTAGG+AGG + chr4_1:34228916-34228935 None:intergenic 50.0%
TGTGACCTGCAGTTATCCCA+AGG - chr4_1:34230663-34230682 Msa0544930:intron 50.0%
! GCTTGAGTCTTGGCCTTTAG+AGG - chr4_1:34231429-34231448 Msa0544930:CDS 50.0%
TAAACGCCAGAGTTCGCTTG+TGG - chr4_1:34231498-34231517 Msa0544930:CDS 50.0%
TGGTTTCCACAAGCGAACTC+TGG + chr4_1:34231507-34231526 None:intergenic 50.0%
GGAAGAAACCAAGGAGCAAG+AGG - chr4_1:34231547-34231566 Msa0544930:CDS 50.0%
ACATCACCAATGGGAGGAGA+AGG - chr4_1:34231722-34231741 Msa0544930:CDS 50.0%
GCTCCTAGGTTCCATGGAAA+TGG - chr4_1:34232013-34232032 Msa0544930:CDS 50.0%
!! CCATGTTGGGTTGAAGAGAG+AGG + chr4_1:34232079-34232098 None:intergenic 50.0%
CCTCTCTCTTCAACCCAACA+TGG - chr4_1:34232076-34232095 Msa0544930:five_prime_UTR 50.0%
GACGAAATCATGTTGCCACC+AGG + chr4_1:34232327-34232346 None:intergenic 50.0%
TCTTTCTTCCCCTCCTCGTG+CGG - chr4_1:34226513-34226532 Msa0544930:three_prime_UTR 55.0%
ATGGAATTCCCGCACGAGGA+GGG + chr4_1:34226525-34226544 None:intergenic 55.0%
AAGGATGGAATTCCCGCACG+AGG + chr4_1:34226529-34226548 None:intergenic 55.0%
! TTGAGTGATGAAGGCGCGTG+AGG + chr4_1:34227270-34227289 None:intergenic 55.0%
! ATAGTGGGGACGAGGAGTCA+CGG + chr4_1:34227412-34227431 None:intergenic 55.0%
! ATTTGCTGCGGGCGAAACTC+TGG + chr4_1:34227534-34227553 None:intergenic 55.0%
GAGTTTCGCCCGCAGCAAAT+TGG - chr4_1:34227534-34227553 Msa0544930:CDS 55.0%
CTTCGCAGCAAACGCCTTAC+CGG - chr4_1:34227601-34227620 Msa0544930:intron 55.0%
GATCCACTCCGGCAAATCCA+TGG + chr4_1:34228788-34228807 None:intergenic 55.0%
ACCACCAACTCCGACAACAG+CGG - chr4_1:34229784-34229803 Msa0544930:intron 55.0%
AATGCTTGGAGGCCTCAGAG+AGG - chr4_1:34229837-34229856 Msa0544930:intron 55.0%
CTTTCAGGCAAGCCTCTCTG+AGG + chr4_1:34229852-34229871 None:intergenic 55.0%
GGAGTCCTTGGGATAACTGC+AGG + chr4_1:34230671-34230690 None:intergenic 55.0%
TCACCAATGGGAGGAGAAGG+AGG - chr4_1:34231725-34231744 Msa0544930:CDS 55.0%
CACCAATGGGAGGAGAAGGA+GGG - chr4_1:34231726-34231745 Msa0544930:CDS 55.0%
CTTTCTTCCCCTCCTCGTGC+GGG - chr4_1:34226514-34226533 Msa0544930:three_prime_UTR 60.0%
TGGAATTCCCGCACGAGGAG+GGG + chr4_1:34226524-34226543 None:intergenic 60.0%
GATGGAATTCCCGCACGAGG+AGG + chr4_1:34226526-34226545 None:intergenic 60.0%
ACTTCTCCCCACGCGCTTCA+TGG - chr4_1:34227234-34227253 Msa0544930:CDS 60.0%
AGGAGTCACGGTAGCCGAAG+AGG + chr4_1:34227400-34227419 None:intergenic 60.0%
GCAGCAAACGCCTTACCGGT+CGG - chr4_1:34227605-34227624 Msa0544930:intron 60.0%
CAATCTCACCAGAGGCCGAC+CGG + chr4_1:34227623-34227642 None:intergenic 60.0%
GTCGGCCTCTGGTGAGATTG+AGG - chr4_1:34227623-34227642 Msa0544930:intron 60.0%
CCACCAACTCCGACAACAGC+GGG - chr4_1:34229785-34229804 Msa0544930:intron 60.0%
GACCCTCCTTCTCCTCCCAT+TGG + chr4_1:34231731-34231750 None:intergenic 60.0%
TCACCAGAGGCCGACCGGTA+AGG + chr4_1:34227618-34227637 None:intergenic 65.0%
! GAGGTATCTCCGGGTAGCCG+TGG - chr4_1:34227642-34227661 Msa0544930:intron 65.0%
GTATCTCCGGGTAGCCGTGG+AGG - chr4_1:34227645-34227664 Msa0544930:intron 65.0%
CACCACCTTCCTCGCCTCCA+CGG + chr4_1:34227662-34227681 None:intergenic 65.0%
CCCGCTGTTGTCGGAGTTGG+TGG + chr4_1:34229788-34229807 None:intergenic 65.0%
GTGCCCGCTGTTGTCGGAGT+TGG + chr4_1:34229791-34229810 None:intergenic 65.0%
GCTGCAGTGCCCGCTGTTGT+CGG + chr4_1:34229797-34229816 None:intergenic 65.0%
! CAGCGGGCACTGCAGCAACT+TGG - chr4_1:34229801-34229820 Msa0544930:intron 65.0%
ACGCCTTACCGGTCGGCCTC+TGG - chr4_1:34227612-34227631 Msa0544930:intron 70.0%
TCCTCGCCTCCACGGCTACC+CGG + chr4_1:34227654-34227673 None:intergenic 70.0%
GGTAGCCGTGGAGGCGAGGA+AGG - chr4_1:34227654-34227673 Msa0544930:intron 70.0%
AGCCGTGGAGGCGAGGAAGG+TGG - chr4_1:34227657-34227676 Msa0544930:intron 70.0%
CGTGGAGGCGAGGAAGGTGG+TGG - chr4_1:34227660-34227679 Msa0544930:intron 70.0%
TCCGGGTAGCCGTGGAGGCG+AGG - chr4_1:34227650-34227669 Msa0544930:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 34226399 34232699 34226399 ID=Msa0544930;Name=Msa0544930
chr4_1 mRNA 34226399 34232699 34226399 ID=Msa0544930-mRNA-1;Parent=Msa0544930;Name=Msa0544930-mRNA-1;_AED=0.09;_eAED=0.09;_QI=423|1|1|1|0.75|0.6|5|426|710
chr4_1 exon 34226399 34227616 34226399 ID=Msa0544930-mRNA-1:exon:8728;Parent=Msa0544930-mRNA-1
chr4_1 exon 34228363 34228423 34228363 ID=Msa0544930-mRNA-1:exon:8727;Parent=Msa0544930-mRNA-1
chr4_1 exon 34229179 34229552 34229179 ID=Msa0544930-mRNA-1:exon:8726;Parent=Msa0544930-mRNA-1
chr4_1 exon 34231136 34232245 34231136 ID=Msa0544930-mRNA-1:exon:8725;Parent=Msa0544930-mRNA-1
chr4_1 exon 34232481 34232699 34232481 ID=Msa0544930-mRNA-1:exon:8724;Parent=Msa0544930-mRNA-1
chr4_1 five_prime_UTR 34232481 34232699 34232481 ID=Msa0544930-mRNA-1:five_prime_utr;Parent=Msa0544930-mRNA-1
chr4_1 five_prime_UTR 34232042 34232245 34232042 ID=Msa0544930-mRNA-1:five_prime_utr;Parent=Msa0544930-mRNA-1
chr4_1 CDS 34231136 34232041 34231136 ID=Msa0544930-mRNA-1:cds;Parent=Msa0544930-mRNA-1
chr4_1 CDS 34229179 34229552 34229179 ID=Msa0544930-mRNA-1:cds;Parent=Msa0544930-mRNA-1
chr4_1 CDS 34228363 34228423 34228363 ID=Msa0544930-mRNA-1:cds;Parent=Msa0544930-mRNA-1
chr4_1 CDS 34226825 34227616 34226825 ID=Msa0544930-mRNA-1:cds;Parent=Msa0544930-mRNA-1
chr4_1 three_prime_UTR 34226399 34226824 34226399 ID=Msa0544930-mRNA-1:three_prime_utr;Parent=Msa0544930-mRNA-1
Gene Sequence

>Msa0544930

ATGGCAACGTACTTTCATGGCAACAGCAACAGCAACAGTTCTGAAATCCAACCGTCGGTAGAAGGTTTACAGACACTTTACCTTATGAATCCAAACTACGTACCTTACTCTGAGGAACCACAAAATCCAACACAAAACATGCTTTTCGCTAATCCCAACGCTACCACTAACAATAGTACTTCTCCCCACGCGCTTCATGGATTCAAGTTTCCTCACGCGCCTTCATCACTCAATCAACACCACTTGCTTGGAGTTACTATTCCACCTTCCAACTTTCATGGATCCAACACTACCGACACTCCTACACAACCATATGAAGTTTCCACCTTCCATCCATTTTCCTCTTCGGCTACCGTGACTCCTCGTCCCCACTATAACATGTGGGGATCAGGTAGCTTTCTACCTGATAACGCTGTCACAGCAACGACAACTGATAGATCAGAATGTTCAGATGTCGTTTCTGTGACAACATCTCCAGAGTTTCGCCCGCAGCAAATTGGTTTTCATAGACCAGTTTATCAGCGTGGTTTGTCTCTCAGTCTTTCTTCGCAGCAAACGCCTTACCGGTCGGCCTCTGGTGAGATTGAGGTATCTCCGGGTAGCCGTGGAGGCGAGGAAGGTGGTGGAGTTTCGACCATGAACGGTGTTATTTTTGGCTCGAAGTATATGAAAGTAGCACAAGAGCTTCTTGATGAAGTTGTGAATGTGGATAAGGGAATCATCAAAGGAGAATCTGTGGAAGGAGGTAATAGTAATAACAACAAAGAGAAGAGGAAAGCAAATATTGAATCTAGTTCAAGTGGTGGAAGAGAAAACAATGGAGGGAAACAAGTAGCTGAATTAAGCACTGCACAAAGACAAGAACTTCAGATGAAGAAGTCAAAGCTTGTTAGCATGCTAGATGAGGTAGAGCTAAGGTACAGACAATACCACCATCAAATGCAAAGTGTGATATCATCATTTGAGCAAGCAACAGGATATGGAGCATCAAAATCTTACACATCCCTAGCCTTGAAGACAATCTCAAAGCAGTTTCGAAGTCTAAAAGATTCAATCTCTTCACAAATTAAGACAGCTAGCAAGACTTTGGGTGAAGATGATTGCTTGGGTGTTAAGTTAGAAGGTTCTAGGCTTCGGTATGTCGACCACCAACTCCGACAACAGCGGGCACTGCAGCAACTTGGAATGATTCATAGCAATGCTTGGAGGCCTCAGAGAGGCTTGCCTGAAAGAGCTGTTTCTGTTCTTCGTGCTTGGCTTTTTGAACATTTCTTGCACCCTTATCCCAAGGACTCCGATAAGGTTATGCTTGCAAGACAAACTGGACTTACTAGGAGTCAGGTATCTAACTGGTTTATAAACGCCAGAGTTCGCTTGTGGAAACCAATGGTTGAAGAAATGTACTTGGAAGAAACCAAGGAGCAAGAGGAGAATAACGACTCCAAGGATAACACAAATAGATCAAAAGAATTAGGTGCCGCAAAACTTGATCAAATTAATAATCTTCATTCAAAAGCAGAAAACTTCAACAACCAAAACCTTTCTCCAACAGTGATTTCAAGTTCCAATAATTCAATGTCAACATCACCAATGGGAGGAGAAGGAGGGTCCTTTCAATCCAATTCTGGTTTCCATCTTGCAGGATCATCTGATGTGCAAAGGAGTCCAAAAAACTCCCATCAAGGTAGTTTCCTTTCAATGGACATGGAATTGAAGTCTAATAGAGAGTCCACCACAGAGTTTGAAGTTGAAAGGCATAATCATGACAAAAATGAATACCCTTTATTGAGTGGAAATGAAAATCATCATGGTGGTGGTTATGGATCATTCTCAATGGAAGATGTTAGAAGGTTTAATGTTAGTGAGCAATTAGCTCCTAGGTTCCATGGAAATGGTGTTTCTCTAACTCTTGGACTACCTCATAATGAAAATATTCCTCTCTCTTCAACCCAACATGGATTTCTCTCTCAGAATTTACATTTAGGAGGGACGATTGATGAAATGGGAAGCAATGAGAATGAGTTTTGTACCATCAACACTACTCCTTCTCATTCAGGAACAAATTATGAGAGTATTGATATTGAAAACAGAAAGAGGTTTGCTGCTCAATTATTGCGAAATTTTGTGACCTAG
Protein sequence

>Msa0544930

MATYFHGNSNSNSSEIQPSVEGLQTLYLMNPNYVPYSEEPQNPTQNMLFANPNATTNNSTSPHALHGFKFPHAPSSLNQHHLLGVTIPPSNFHGSNTTDTPTQPYEVSTFHPFSSSATVTPRPHYNMWGSGSFLPDNAVTATTTDRSECSDVVSVTTSPEFRPQQIGFHRPVYQRGLSLSLSSQQTPYRSASGEIEVSPGSRGGEEGGGVSTMNGVIFGSKYMKVAQELLDEVVNVDKGIIKGESVEGGNSNNNKEKRKANIESSSSGGRENNGGKQVAELSTAQRQELQMKKSKLVSMLDEVELRYRQYHHQMQSVISSFEQATGYGASKSYTSLALKTISKQFRSLKDSISSQIKTASKTLGEDDCLGVKLEGSRLRYVDHQLRQQRALQQLGMIHSNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYLEETKEQEENNDSKDNTNRSKELGAAKLDQINNLHSKAENFNNQNLSPTVISSSNNSMSTSPMGGEGGSFQSNSGFHLAGSSDVQRSPKNSHQGSFLSMDMELKSNRESTTEFEVERHNHDKNEYPLLSGNENHHGGGYGSFSMEDVRRFNVSEQLAPRFHGNGVSLTLGLPHNENIPLSSTQHGFLSQNLHLGGTIDEMGSNENEFCTINTTPSHSGTNYESIDIENRKRFAAQLLRNFVT*