AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0679560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0679560 MtrunA17_Chr4g0025521 95.365 712 31 2 1 711 1 711 0.0 1316
Msa0679560 MtrunA17_Chr7g0267481 45.148 742 294 25 1 711 1 660 1.55e-162 483
Msa0679560 MtrunA17_Chr1g0177751 46.332 736 283 29 1 711 1 649 5.78e-162 481
Msa0679560 MtrunA17_Chr3g0141941 44.787 422 173 14 90 493 56 435 1.45e-95 305
Msa0679560 MtrunA17_Chr1g0155681 58.209 268 96 4 218 477 172 431 1.99e-95 308
Msa0679560 MtrunA17_Chr8g0373801 50.534 281 133 4 216 491 388 667 5.33e-82 278
Msa0679560 MtrunA17_Chr8g0387321 52.708 277 119 3 216 487 185 454 4.13e-78 262
Msa0679560 MtrunA17_Chr5g0403251 50.909 275 128 4 206 477 329 599 1.72e-77 263
Msa0679560 MtrunA17_Chr3g0141931 45.205 292 139 5 209 491 158 437 5.15e-71 238
Msa0679560 MtrunA17_Chr4g0028701 39.815 324 144 5 216 494 245 562 5.09e-64 225
Msa0679560 MtrunA17_Chr4g0008591 42.657 286 120 5 216 490 196 448 1.17e-60 214
Msa0679560 MtrunA17_Chr7g0240371 42.701 274 135 6 216 485 137 392 1.62e-59 209
Msa0679560 MtrunA17_Chr2g0327021 38.854 314 164 7 216 509 248 553 2.41e-58 208
Msa0679560 MtrunA17_Chr1g0151681 36.310 336 163 10 179 481 186 503 6.30e-52 188
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0679560 AT2G35940.3 42.857 756 311 29 1 711 1 680 7.24e-131 403
Msa0679560 AT2G35940.1 42.857 756 311 29 1 711 1 680 7.24e-131 403
Msa0679560 AT2G35940.2 42.857 756 311 29 1 711 1 680 7.24e-131 403
Msa0679560 AT2G16400.1 49.077 379 153 10 149 523 57 399 7.75e-97 308
Msa0679560 AT4G34610.2 50.000 352 146 9 175 517 94 424 3.86e-96 308
Msa0679560 AT4G34610.4 50.000 352 146 9 175 517 94 424 3.86e-96 308
Msa0679560 AT4G34610.3 50.000 352 146 9 175 517 94 424 3.86e-96 308
Msa0679560 AT4G34610.1 50.000 352 146 9 175 517 94 424 3.86e-96 308
Msa0679560 AT1G75410.1 52.381 294 104 6 205 483 160 432 6.57e-89 288
Msa0679560 AT1G75410.2 52.381 294 104 6 205 483 160 432 6.57e-89 288
Msa0679560 AT1G19700.1 52.518 278 100 6 217 478 166 427 1.07e-86 283
Msa0679560 AT1G19700.3 52.518 278 100 6 217 478 166 427 1.07e-86 283
Msa0679560 AT1G19700.5 52.518 278 100 6 217 478 166 427 1.07e-86 283
Msa0679560 AT1G19700.4 52.518 278 100 6 217 478 166 427 1.07e-86 283
Msa0679560 AT1G19700.2 52.518 278 100 6 217 478 166 427 1.07e-86 283
Msa0679560 AT2G27220.1 46.797 359 143 9 146 502 12 324 1.49e-86 279
Msa0679560 AT2G27220.3 46.797 359 143 9 146 502 12 324 1.49e-86 279
Msa0679560 AT2G27220.2 44.562 377 143 10 146 502 12 342 1.76e-82 269
Msa0679560 AT2G23760.2 52.434 267 114 3 208 469 233 491 4.46e-80 268
Msa0679560 AT2G23760.1 52.434 267 114 3 208 469 233 491 4.46e-80 268
Msa0679560 AT2G23760.3 52.434 267 114 3 208 469 233 491 4.46e-80 268
Msa0679560 AT1G75410.3 50.588 255 95 5 205 449 160 393 3.66e-71 238
Msa0679560 AT2G23760.4 43.887 319 114 4 208 469 233 543 3.25e-70 243
Msa0679560 AT5G41410.1 46.377 276 130 4 217 477 194 466 2.12e-68 236
Msa0679560 AT4G36870.4 47.083 240 117 3 216 450 312 546 1.86e-62 218
Msa0679560 AT1G75430.1 40.484 289 147 7 210 482 10 289 1.31e-61 208
Msa0679560 AT4G36870.3 46.639 238 117 3 216 448 312 544 2.69e-61 215
Msa0679560 AT5G02030.1 40.134 299 127 3 197 473 151 419 4.77e-58 207
Msa0679560 AT4G32980.1 37.975 316 163 8 177 479 154 449 8.75e-52 187
Msa0679560 AT4G32980.2 37.975 316 163 8 177 479 154 449 8.75e-52 187
Msa0679560 AT2G27990.1 38.436 307 152 8 174 474 221 496 4.01e-49 182
Msa0679560 AT1G75430.2 35.526 228 129 6 210 428 10 228 6.12e-33 129
Msa0679560 AT2G27990.2 30.000 260 147 7 174 428 221 450 4.28e-23 103

Find 231 sgRNAs with CRISPR-Local

Find 389 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTCTTTAACGTGTAATT+TGG 0.155568 4_4:-37392148 None:intergenic
AGAAAGATTAATGGAACTTT+TGG 0.216027 4_4:-37391626 None:intergenic
GCATGAATGTAATTTGTATT+TGG 0.245393 4_4:+37397691 Msa0679560:three_prime_UTR
TGATGTTGACATTGAATTAT+TGG 0.252974 4_4:-37396861 None:intergenic
CAAAATCACATATAATTTCT+AGG 0.265756 4_4:-37397425 None:intergenic
ATTCCACCTTCCAACTTTCA+TGG 0.270274 4_4:+37392467 Msa0679560:CDS
CTCTCTCAGAATTTACATTT+AGG 0.274546 4_4:+37397259 Msa0679560:CDS
GGGTCCTTTCAATCCAATTC+TGG 0.288442 4_4:+37396902 Msa0679560:CDS
TTAAGTTAGAAGGTTCTTCT+AGG 0.296057 4_4:+37394900 Msa0679560:CDS
CTGCTTTGAGATTGTCTTCA+AGG 0.297342 4_4:-37394798 None:intergenic
AATTCTGGTTTCCATCTTGC+AGG 0.297418 4_4:+37396917 Msa0679560:CDS
TCTTGCAAGCATAACCTTAT+CGG 0.300640 4_4:-37395845 None:intergenic
ACAAATAGATCAAAAGAATT+AGG 0.307786 4_4:+37396749 Msa0679560:CDS
TCACTGTTGGAGAAAGGTTT+TGG 0.308937 4_4:-37396829 None:intergenic
AGGAGGGACGATTGATGAAA+TGG 0.313418 4_4:+37397279 Msa0679560:CDS
TTTGAGCAAGCAACAGGATA+TGG 0.320173 4_4:+37394749 Msa0679560:CDS
TGCTTGGGTGTTAAGTTAGA+AGG 0.330959 4_4:+37394890 Msa0679560:CDS
TCAGAGTAAGGTACGTAGTT+TGG 0.340254 4_4:-37392299 None:intergenic
GGTTCTCCCCACGCGCTTCA+TGG 0.344045 4_4:+37392386 Msa0679560:CDS
CTTCGCAGCAAACGCCTTAC+CGG 0.347714 4_4:+37392753 Msa0679560:CDS
TTGCTAGCTCTATTATGATT+GGG 0.355291 4_4:-37391583 None:intergenic
AGGAGGGGAAGAAAGATTAA+TGG 0.357424 4_4:-37391635 None:intergenic
ATTGCTAGCTCTATTATGAT+TGG 0.358539 4_4:-37391584 None:intergenic
TCAAGGTAGTTTCCTTTCAA+TGG 0.367613 4_4:+37396976 Msa0679560:CDS
GAGTTTCGCCCGCAGCAAAT+TGG 0.368022 4_4:+37392686 Msa0679560:CDS
GACAAACCACGCTGATAAAC+TGG 0.368350 4_4:-37392719 None:intergenic
TACATACTTTAATATGGTAT+TGG 0.369864 4_4:+37397582 Msa0679560:three_prime_UTR
GTTATGCTTGCAAGACAAAC+TGG 0.371730 4_4:+37395853 Msa0679560:CDS
TGATCTATTTGTGTTATCCT+TGG 0.372128 4_4:-37396738 None:intergenic
AGAACAGAAACAGCTCTTTC+AGG 0.372428 4_4:-37395016 None:intergenic
GGAGGGACGATTGATGAAAT+GGG 0.373488 4_4:+37397280 Msa0679560:CDS
CACTATAACATGTGGGGATC+AGG 0.378783 4_4:+37392578 Msa0679560:CDS
AGAATTAATTCTGACAGATA+TGG 0.379407 4_4:+37392190 Msa0679560:exon
CAAGACAAACTGGACTTACT+AGG 0.381649 4_4:+37395863 Msa0679560:CDS
ATATCACACTTTGCATTTGA+TGG 0.388198 4_4:-37394721 None:intergenic
CTGTTTCTGTTCTTCGTGCT+TGG 0.388531 4_4:+37395026 Msa0679560:CDS
AACGCTACCAATAGCAATAA+TGG 0.388746 4_4:+37392365 Msa0679560:CDS
TTTCATTTCCACTCAATAAA+GGG 0.390624 4_4:-37397075 None:intergenic
GAAATCCAACCGTCGGTAGA+AGG 0.392044 4_4:+37392251 Msa0679560:CDS
TCTCAATGGAAGATATTAGA+AGG 0.392699 4_4:+37397125 Msa0679560:CDS
TTATATAATAAGCGTCTGTT+TGG 0.393613 4_4:-37397518 None:intergenic
ACGGTAGCCGAGGAGGAAAA+TGG 0.396762 4_4:-37392542 None:intergenic
GTCTACTAATTAATTGCAAA+TGG 0.398084 4_4:+37391690 Msa0679560:five_prime_UTR
CAAGTTGAGTTGGATTAAGT+TGG 0.398736 4_4:+37397551 Msa0679560:three_prime_UTR
ATTATTCTCCTCTTGCTCCT+TGG 0.402178 4_4:-37396711 None:intergenic
TTGAAGTTTCAACAAAATCC+TGG 0.402811 4_4:+37397462 Msa0679560:three_prime_UTR
GTTGCTGTGACAGCGTTATC+AGG 0.403199 4_4:-37392611 None:intergenic
TAAGACAGCTAGCAAGACTT+TGG 0.403443 4_4:+37394856 Msa0679560:CDS
ACGCCTTACCGGTCGGCCTC+TGG 0.404712 4_4:+37392764 Msa0679560:CDS
CATAACCTTATCGGAGTCCT+TGG 0.408384 4_4:-37395836 None:intergenic
GGGAGAACCATTATTGCTAT+TGG 0.410019 4_4:-37392372 None:intergenic
CTGATCCCCACATGTTATAG+TGG 0.410131 4_4:-37392577 None:intergenic
AAAGTGATGTGTATGGGATT+TGG 0.412182 4_4:+37397789 Msa0679560:three_prime_UTR
TGCAAGATGGAAACCAGAAT+TGG 0.412205 4_4:-37396915 None:intergenic
GATATGGCAACGTACTTTCA+TGG 0.416361 4_4:+37392206 Msa0679560:exon
GCTGCAGTGCCCGCTGTTGT+CGG 0.418316 4_4:-37394946 None:intergenic
ATTTGCTGCGGGCGAAACTC+TGG 0.420271 4_4:-37392683 None:intergenic
AATCATCATGGTGATGGTTA+TGG 0.423579 4_4:+37397097 Msa0679560:CDS
TAGAAGGTTCTTCTAGGCTT+CGG 0.424301 4_4:+37394906 Msa0679560:CDS
TTGAAAGGAAACTACCTTGA+TGG 0.429916 4_4:-37396973 None:intergenic
AACACTACTCCTTCTCATTC+AGG 0.436567 4_4:+37397331 Msa0679560:CDS
AATGGTGTTTCTCTAACTCT+TGG 0.436577 4_4:+37397187 Msa0679560:CDS
TTGATATTGAAAACAGAAAG+AGG 0.441083 4_4:+37397371 Msa0679560:CDS
AAGGTATACATACTTTAATA+TGG 0.441097 4_4:+37397576 Msa0679560:three_prime_UTR
AAGCTTGTTAATTTGAAGCT+TGG 0.443810 4_4:-37392067 None:intergenic
TGAAGTTGTGAATGTGGATA+AGG 0.445751 4_4:+37392901 Msa0679560:CDS
TGGTGAGATTGAGGTATCTC+CGG 0.447805 4_4:+37392784 Msa0679560:CDS
TCATCATTTGAGCAAGCAAC+AGG 0.451763 4_4:+37394743 Msa0679560:CDS
CTCAATCAACACCACTTGCT+TGG 0.452628 4_4:+37392437 Msa0679560:CDS
TTGAGATTGTCTTCAAGGCT+AGG 0.454466 4_4:-37394793 None:intergenic
GCTCCTAGGTTCCATGGAAA+TGG 0.455886 4_4:+37397169 Msa0679560:CDS
TTGAAATCACTGTTGGAGAA+AGG 0.457475 4_4:-37396835 None:intergenic
AAGACAGCTAGCAAGACTTT+GGG 0.459364 4_4:+37394857 Msa0679560:CDS
GATGTGGTGGAAATCATTAA+AGG 0.459536 4_4:+37397724 Msa0679560:three_prime_UTR
TTGGGTGAAGATGATTGCTT+GGG 0.462431 4_4:+37394875 Msa0679560:CDS
TTGGAACTTGAAATCACTGT+TGG 0.463404 4_4:-37396842 None:intergenic
CAGCGGGCACTGCAGCAACT+TGG 0.465763 4_4:+37394953 Msa0679560:CDS
TTAACGTGTAATTTGGATTG+TGG 0.467877 4_4:-37392141 None:intergenic
TTAGTGAGCAATTAGCTCCT+AGG 0.468409 4_4:+37397155 Msa0679560:CDS
GTACGTAGTTTGGATTCATA+AGG 0.468791 4_4:-37392289 None:intergenic
TGAAGTTTCAACAAAATCCT+GGG 0.471146 4_4:+37397463 Msa0679560:three_prime_UTR
TCTCAGAATTTACATTTAGG+AGG 0.475857 4_4:+37397262 Msa0679560:CDS
TTATAAGACTCAAGTTGAGT+TGG 0.479257 4_4:+37397541 Msa0679560:three_prime_UTR
GAAGTTGTGAATGTGGATAA+GGG 0.480429 4_4:+37392902 Msa0679560:CDS
GGTAGCCGTGGAGGCGAGGA+AGG 0.483983 4_4:+37392806 Msa0679560:CDS
CTTTGCATGCATGCAGCAGT+AGG 0.489347 4_4:-37397840 None:intergenic
CCACCAACTCCGACAACAGC+GGG 0.492092 4_4:+37394937 Msa0679560:CDS
CTGAGAGAGAAATCCATGTT+GGG 0.492621 4_4:-37397245 None:intergenic
GTGCCCGCTGTTGTCGGAGT+TGG 0.494381 4_4:-37394940 None:intergenic
ATTATTGCTATTGGTAGCGT+TGG 0.494646 4_4:-37392363 None:intergenic
GAATGATTCATAGCAATGCT+TGG 0.495045 4_4:+37394975 Msa0679560:CDS
AACTGGACTTACTAGGAGTC+AGG 0.495725 4_4:+37395870 Msa0679560:CDS
TTATTGCTATTGGTAGCGTT+GGG 0.499259 4_4:-37392362 None:intergenic
CAATTAGCTCCTAGGTTCCA+TGG 0.502313 4_4:+37397163 Msa0679560:CDS
TCACCAGAGGCCGACCGGTA+AGG 0.503130 4_4:-37392767 None:intergenic
AAGTACATTTCTTCAACCAT+TGG 0.504400 4_4:-37396680 None:intergenic
CTTTCTTCCCCTCCTCGTGC+GGG 0.504475 4_4:+37391643 Msa0679560:five_prime_UTR
TGAGATTGTCTTCAAGGCTA+GGG 0.509850 4_4:-37394792 None:intergenic
TGGTTTCCACAAGCGAACTC+TGG 0.515046 4_4:-37396660 None:intergenic
GAGTTGGATTAAGTTGGAGA+AGG 0.517542 4_4:+37397557 Msa0679560:three_prime_UTR
TAGTTTCCTTTCAATGGACA+TGG 0.518524 4_4:+37396982 Msa0679560:CDS
TCTTTCTTCCCCTCCTCGTG+CGG 0.519485 4_4:+37391642 Msa0679560:five_prime_UTR
TTCCACACGCAAAATTCACT+TGG 0.521622 4_4:+37391534 Msa0679560:five_prime_UTR
CCACAGAGTTTGAAGTTGAA+AGG 0.523168 4_4:+37397029 Msa0679560:CDS
AATGGATACCCTTTATTGAG+TGG 0.523258 4_4:+37397067 Msa0679560:CDS
TCAATTCCATGTCCATTGAA+AGG 0.523266 4_4:-37396988 None:intergenic
AGATATGAAAGTGATGTGTA+TGG 0.524112 4_4:+37397782 Msa0679560:three_prime_UTR
CTCAGAATTTACATTTAGGA+GGG 0.524512 4_4:+37397263 Msa0679560:CDS
TGCTAGCTCTATTATGATTG+GGG 0.525049 4_4:-37391582 None:intergenic
TTCAATGTCAACATCACCAA+TGG 0.525243 4_4:+37396868 Msa0679560:CDS
TGTAGGAGTGTCGGTAGTGT+TGG 0.526282 4_4:-37392492 None:intergenic
GAAACCAGAATTGGATTGAA+AGG 0.527024 4_4:-37396906 None:intergenic
CCTCTCTCTTCAACCCAACA+TGG 0.528120 4_4:+37397232 Msa0679560:CDS
CCCGCTGTTGTCGGAGTTGG+TGG 0.528625 4_4:-37394937 None:intergenic
GGAAAATTAACCAGGTATGT+AGG 0.528627 4_4:+37397603 Msa0679560:three_prime_UTR
GGTGAGATTGAGGTATCTCC+GGG 0.529905 4_4:+37392785 Msa0679560:CDS
TCCGGGTAGCCGTGGAGGCG+AGG 0.533224 4_4:+37392802 Msa0679560:CDS
TTTGGGTGAAGATGATTGCT+TGG 0.533846 4_4:+37394874 Msa0679560:CDS
GACCCTCCTTCTCCTCCCAT+TGG 0.534808 4_4:-37396884 None:intergenic
AGTGTTGGATCCATGAAAGT+TGG 0.535269 4_4:-37392477 None:intergenic
TCTGAGAGAGAAATCCATGT+TGG 0.535848 4_4:-37397246 None:intergenic
GAAACTTCATATGGTTGTGT+AGG 0.538056 4_4:-37392509 None:intergenic
TAAACGCCAGAGTTCGCTTG+TGG 0.538237 4_4:+37396654 Msa0679560:CDS
TGCAATTAATTAGTAGACAA+AGG 0.538398 4_4:-37391685 None:intergenic
TGGTTATGGATCACTCTCAA+TGG 0.538470 4_4:+37397111 Msa0679560:CDS
AATGGTTGAAGAAATGTACT+TGG 0.541831 4_4:+37396682 Msa0679560:CDS
TGAAAGGAAACTACCTTGAT+GGG 0.542083 4_4:-37396972 None:intergenic
GTCGGCCTCTGGTGAGATTG+AGG 0.544425 4_4:+37392775 Msa0679560:CDS
TTATCCCAAGGACTCCGATA+AGG 0.544643 4_4:+37395831 Msa0679560:CDS
CATCAGATGATCCTGCAAGA+TGG 0.545078 4_4:-37396928 None:intergenic
CGTGGAGGCGAGGAAGGTGG+TGG 0.547728 4_4:+37392812 Msa0679560:CDS
ATAACCTTATCGGAGTCCTT+GGG 0.549058 4_4:-37395835 None:intergenic
ATGAGAAGGAGTAGTGTTGA+TGG 0.552006 4_4:-37397326 None:intergenic
TTCAACTTCAAACTCTGTGG+TGG 0.552624 4_4:-37397026 None:intergenic
CAATCTCACCAGAGGCCGAC+CGG 0.552708 4_4:-37392772 None:intergenic
TCCTCGCCTCCACGGCTACC+CGG 0.553350 4_4:-37392803 None:intergenic
ACATCACCAATGGGAGGAGA+AGG 0.558319 4_4:+37396878 Msa0679560:CDS
TTAGAGAAACACCATTTCCA+TGG 0.559032 4_4:-37397180 None:intergenic
TCAATGTCAACATCACCAAT+GGG 0.559905 4_4:+37396869 Msa0679560:CDS
GTAAACCTTCTACCGACGGT+TGG 0.560766 4_4:-37392256 None:intergenic
TATGAAAACCAATTTGCTGC+GGG 0.560781 4_4:-37392694 None:intergenic
TAATTTGTTCCTGAATGAGA+AGG 0.560909 4_4:-37397340 None:intergenic
CTCGTCCCCACTATAACATG+TGG 0.566142 4_4:+37392570 Msa0679560:CDS
AGCCGTGGAGGCGAGGAAGG+TGG 0.567527 4_4:+37392809 Msa0679560:CDS
GGAAGAAACCAAGGAGCAAG+AGG 0.569522 4_4:+37396703 Msa0679560:CDS
ATGGAATTCCCGCACGAGGA+GGG 0.570104 4_4:-37391651 None:intergenic
TCACCAATGGGAGGAGAAGG+AGG 0.571505 4_4:+37396881 Msa0679560:CDS
GAACAATGTAGGTAGAGCTA+AGG 0.571744 4_4:+37394684 Msa0679560:intron
AATACAAATTACATTCATGC+AGG 0.573041 4_4:-37397688 None:intergenic
ACGAGGAGTCACGGTAGCCG+AGG 0.573764 4_4:-37392552 None:intergenic
TGATCCCCACATGTTATAGT+GGG 0.573944 4_4:-37392576 None:intergenic
AGTTCGCTTGTGGAAACCAA+TGG 0.575659 4_4:+37396664 Msa0679560:CDS
ATGCATGCAGCAGTAGGGTA+TGG 0.576937 4_4:-37397834 None:intergenic
GACAAAGGCAGCTACAAGGA+TGG 0.577961 4_4:-37391670 None:intergenic
TGGAATTCCCGCACGAGGAG+GGG 0.581086 4_4:-37391650 None:intergenic
GTAATAACAACAAAGAGAAG+AGG 0.583452 4_4:+37392960 Msa0679560:CDS
AATATTGAATCTAGTTCAAG+TGG 0.585962 4_4:+37392989 Msa0679560:CDS
TGATTCATAGCAATGCTTGG+AGG 0.588232 4_4:+37394978 Msa0679560:CDS
TGGTGTTGATTGAGTGATGA+AGG 0.588479 4_4:-37392428 None:intergenic
GTGGATAAGGGAATCATCAA+AGG 0.589254 4_4:+37392914 Msa0679560:CDS
CACCACCTTCCTCGCCTCCA+CGG 0.590288 4_4:-37392811 None:intergenic
TCATTCAACTCCTACATACC+TGG 0.591092 4_4:-37397613 None:intergenic
CACATGTTATAGTGGGGACG+AGG 0.591269 4_4:-37392569 None:intergenic
AGTAGACAAAGGCAGCTACA+AGG 0.593196 4_4:-37391674 None:intergenic
AGAGGAGAATAATGACTCCA+AGG 0.594942 4_4:+37396721 Msa0679560:CDS
AATCATCAAAGGAGAATCTG+TGG 0.597233 4_4:+37392925 Msa0679560:CDS
CGAGGAGGAAAATGGATGGA+AGG 0.598355 4_4:-37392534 None:intergenic
TCACACTTTGCATTTGATGG+TGG 0.598415 4_4:-37394718 None:intergenic
CCATGTTGGGTTGAAGAGAG+AGG 0.600531 4_4:-37397232 None:intergenic
TGGAAGGTGGAAACTTCATA+TGG 0.602748 4_4:-37392518 None:intergenic
CTTGAATCCATGAAGCGCGT+GGG 0.602989 4_4:-37392393 None:intergenic
ATATGGTTGTGTAGGAGTGT+CGG 0.603447 4_4:-37392501 None:intergenic
GAGGTATCTCCGGGTAGCCG+TGG 0.603840 4_4:+37392794 Msa0679560:CDS
ACACCATTTCCATGGAACCT+AGG 0.604931 4_4:-37397172 None:intergenic
CAGGATCATCTGATGTGCAA+AGG 0.605084 4_4:+37396936 Msa0679560:CDS
CATGTTGGGTTGAAGAGAGA+GGG 0.605412 4_4:-37397231 None:intergenic
TTTGCATGCATGCAGCAGTA+GGG 0.607294 4_4:-37397839 None:intergenic
GGTGGAGTTTCGACCATGAA+CGG 0.607341 4_4:+37392830 Msa0679560:CDS
GTCTGTAAACCTTCTACCGA+CGG 0.607577 4_4:-37392260 None:intergenic
ATCAAAGGAGAATCTGTGGA+AGG 0.608300 4_4:+37392929 Msa0679560:CDS
TCGTCCCCACTATAACATGT+GGG 0.609880 4_4:+37392571 Msa0679560:CDS
AATGAAAATCATCATGGTGA+TGG 0.612392 4_4:+37397091 Msa0679560:CDS
ACTTGAATCCATGAAGCGCG+TGG 0.612796 4_4:-37392394 None:intergenic
CTTTCAGGCAAGCCTCTCTG+AGG 0.615305 4_4:-37395001 None:intergenic
GAAGTTTCAACAAAATCCTG+GGG 0.615894 4_4:+37397464 Msa0679560:three_prime_UTR
ATGGTATTGGAAAATTAACC+AGG 0.618579 4_4:+37397595 Msa0679560:three_prime_UTR
GGTGGAAGAGAAAACAATGG+AGG 0.618595 4_4:+37393010 Msa0679560:CDS
CTATGAAAACCAATTTGCTG+CGG 0.619359 4_4:-37392695 None:intergenic
ATTGAATCTAGTTCAAGTGG+TGG 0.621430 4_4:+37392992 Msa0679560:CDS
TAGCTCTATTATGATTGGGG+TGG 0.621491 4_4:-37391579 None:intergenic
TCTTAATGAAGTTGTGAATG+TGG 0.622445 4_4:+37392895 Msa0679560:CDS
GGAGGAAAATGGATGGAAGG+TGG 0.623156 4_4:-37392531 None:intergenic
TTGAATCCATGAAGCGCGTG+GGG 0.624444 4_4:-37392392 None:intergenic
AATGTACTTGGAAGAAACCA+AGG 0.627170 4_4:+37396694 Msa0679560:CDS
AGTGGAAATGAAAATCATCA+TGG 0.627811 4_4:+37397085 Msa0679560:CDS
GATTTCGTCAAACTCAGCGT+TGG 0.627954 4_4:+37397494 Msa0679560:three_prime_UTR
AGGAGTCACGGTAGCCGAGG+AGG 0.628325 4_4:-37392549 None:intergenic
GATCCATGAAAGTTGGAAGG+TGG 0.629051 4_4:-37392470 None:intergenic
GATATGAAAGTGATGTGTAT+GGG 0.630522 4_4:+37397783 Msa0679560:three_prime_UTR
TAGCCGAGGAGGAAAATGGA+TGG 0.630526 4_4:-37392538 None:intergenic
GCTTGTTAGCATGCTAGATG+AGG 0.632117 4_4:+37393093 Msa0679560:CDS
GTATCTCCGGGTAGCCGTGG+AGG 0.632306 4_4:+37392797 Msa0679560:CDS
GTGGAAGAGAAAACAATGGA+GGG 0.633833 4_4:+37393011 Msa0679560:CDS
ATTGAGTGATGAAGGCGCGT+GGG 0.637713 4_4:-37392420 None:intergenic
ATAGTGGGGACGAGGAGTCA+CGG 0.640127 4_4:-37392561 None:intergenic
CATAGACCAGTTTATCAGCG+TGG 0.640750 4_4:+37392713 Msa0679560:CDS
TGTGACCTGCAGTTATCCCA+AGG 0.642673 4_4:+37395819 Msa0679560:intron
CACCAATGGGAGGAGAAGGA+GGG 0.642966 4_4:+37396882 Msa0679560:CDS
CCTTTCAACTTCAAACTCTG+TGG 0.643049 4_4:-37397029 None:intergenic
GAATAGTAACTCCAAGCAAG+TGG 0.643953 4_4:-37392448 None:intergenic
TGGTAAGTACGTAGATGTGG+TGG 0.646489 4_4:+37397711 Msa0679560:three_prime_UTR
AAAGGAGAATCTGTGGAAGG+AGG 0.648166 4_4:+37392932 Msa0679560:CDS
ATTTGGTAAGTACGTAGATG+TGG 0.652324 4_4:+37397708 Msa0679560:three_prime_UTR
GATTGAGTGATGAAGGCGCG+TGG 0.659202 4_4:-37392421 None:intergenic
CGTCCCCACTATAACATGTG+GGG 0.666378 4_4:+37392572 Msa0679560:CDS
GCAGCAAACGCCTTACCGGT+CGG 0.670260 4_4:+37392757 Msa0679560:CDS
CAGTTCTGAAATCCAACCGT+CGG 0.674796 4_4:+37392244 Msa0679560:CDS
ACCACCAACTCCGACAACAG+CGG 0.680001 4_4:+37394936 Msa0679560:CDS
AAGGATGGAATTCCCGCACG+AGG 0.681112 4_4:-37391655 None:intergenic
GATGGAATTCCCGCACGAGG+AGG 0.681883 4_4:-37391652 None:intergenic
TTGGATCCATGAAAGTTGGA+AGG 0.681916 4_4:-37392473 None:intergenic
AGATACCTCAATCTCACCAG+AGG 0.686383 4_4:-37392780 None:intergenic
AAGTTTCAACAAAATCCTGG+GGG 0.686733 4_4:+37397465 Msa0679560:three_prime_UTR
TTGAGTGATGAAGGCGCGTG+GGG 0.689955 4_4:-37392419 None:intergenic
ATGTCAACATCACCAATGGG+AGG 0.690189 4_4:+37396872 Msa0679560:CDS
ATGAAAACAAAATCACATGG+TGG 0.692742 4_4:+37392035 Msa0679560:five_prime_UTR
AAAATGAAAACAAAATCACA+TGG 0.701682 4_4:+37392032 Msa0679560:five_prime_UTR
AGTGGTGGAAGAGAAAACAA+TGG 0.709372 4_4:+37393007 Msa0679560:CDS
GATCCCCACATGTTATAGTG+GGG 0.711349 4_4:-37392575 None:intergenic
AAACTACGTACCTTACTCTG+AGG 0.712519 4_4:+37392301 Msa0679560:CDS
AATGCTTGGAGGCCTCAGAG+AGG 0.737120 4_4:+37394989 Msa0679560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTAATTTTCTTTTTAG+GGG - chr4_4:37395301-37395320 None:intergenic 10.0%
!!! CATTATTAATTTTCTTTTTA+GGG - chr4_4:37395302-37395321 None:intergenic 10.0%
!!! TCATTATTAATTTTCTTTTT+AGG - chr4_4:37395303-37395322 None:intergenic 10.0%
!!! ATTTTTATAAAAGTATTTTG+TGG - chr4_4:37396291-37396310 None:intergenic 10.0%
!! AATATTAATCATCTTTCTTA+GGG - chr4_4:37391928-37391947 None:intergenic 15.0%
!! AAATATTAATCATCTTTCTT+AGG - chr4_4:37391929-37391948 None:intergenic 15.0%
!! TACCCATAAATAAATTTAAT+TGG + chr4_4:37394079-37394098 Msa0679560:intron 15.0%
!! AGCCAATTAAATTTATTTAT+GGG - chr4_4:37394084-37394103 None:intergenic 15.0%
!! TAGCCAATTAAATTTATTTA+TGG - chr4_4:37394085-37394104 None:intergenic 15.0%
!!! TATTTTCAAGAAATAGTTAT+TGG + chr4_4:37394245-37394264 Msa0679560:intron 15.0%
!!! AGTTAAATTAACCATAATTT+TGG + chr4_4:37395495-37395514 Msa0679560:intron 15.0%
!! TATATCAAAATTTGTAAGTA+AGG - chr4_4:37395759-37395778 None:intergenic 15.0%
!! ATATAGAAAAATTAAGTACT+TGG + chr4_4:37395774-37395793 Msa0679560:intron 15.0%
!! TATTAACAATCAGATTAAAT+CGG - chr4_4:37395965-37395984 None:intergenic 15.0%
!! TATAAAGATGTACAAAAATT+TGG + chr4_4:37397747-37397766 Msa0679560:three_prime_UTR 15.0%
!! GAAAAAGTGAAAATAAAAAC+TGG + chr4_4:37391725-37391744 Msa0679560:five_prime_UTR 20.0%
!!! TGTTTGAAACAATTATTAAC+CGG + chr4_4:37391862-37391881 Msa0679560:intron 20.0%
!! ATATTAATCATCTTTCTTAG+GGG - chr4_4:37391927-37391946 None:intergenic 20.0%
!!! TTGTTTTCATTTTCATTACT+TGG - chr4_4:37392025-37392044 None:intergenic 20.0%
!! AAAATGAAAACAAAATCACA+TGG + chr4_4:37392032-37392051 Msa0679560:five_prime_UTR 20.0%
!!! AAAAAAGAAAACCTTCTTTT+TGG - chr4_4:37392114-37392133 None:intergenic 20.0%
!! AAATTCTTTAACGTGTAATT+TGG - chr4_4:37392151-37392170 None:intergenic 20.0%
!!! AATTAACTTTCCACAAATTT+TGG + chr4_4:37393138-37393157 Msa0679560:intron 20.0%
!!! ATTAACTTTCCACAAATTTT+GGG + chr4_4:37393139-37393158 Msa0679560:intron 20.0%
!! AAAATATTTGTGTGAAAGTA+CGG + chr4_4:37393213-37393232 Msa0679560:intron 20.0%
!!! TGTCTTTAAAAACAAAATTG+AGG + chr4_4:37393368-37393387 Msa0679560:intron 20.0%
!! TTTGTTGAAAATATATGTTG+AGG + chr4_4:37393499-37393518 Msa0679560:intron 20.0%
!! TATGGTAACATATTAACATA+AGG + chr4_4:37393957-37393976 Msa0679560:intron 20.0%
!! ATGGTAACATATTAACATAA+GGG + chr4_4:37393958-37393977 Msa0679560:intron 20.0%
!! TATTCATGCAAATCTAAATT+AGG - chr4_4:37394287-37394306 None:intergenic 20.0%
!! TGGAGTAATTTAAATACTTA+CGG - chr4_4:37395073-37395092 None:intergenic 20.0%
!! TAATAATGACACATTCTTAA+TGG + chr4_4:37395314-37395333 Msa0679560:intron 20.0%
!!! TATTGATTTGTGCAAAATTT+TGG + chr4_4:37395413-37395432 Msa0679560:intron 20.0%
!!! ATTTTTTAACGTGATAATTG+AGG + chr4_4:37395559-37395578 Msa0679560:intron 20.0%
!!! TTAAAAGTACAGAAATAGAT+TGG - chr4_4:37395902-37395921 None:intergenic 20.0%
!!! AATCTATTTCTGTACTTTTA+AGG + chr4_4:37395901-37395920 Msa0679560:intron 20.0%
!! CATCTTTGTATTATTGTAAT+GGG - chr4_4:37396050-37396069 None:intergenic 20.0%
!! TTTGACAACAATAATTCTAA+AGG + chr4_4:37396489-37396508 Msa0679560:intron 20.0%
!! ACAAATAGATCAAAAGAATT+AGG + chr4_4:37396749-37396768 Msa0679560:CDS 20.0%
!!! ATTAATTTGATCAAGTTTTG+TGG - chr4_4:37396777-37396796 None:intergenic 20.0%
!! CAAAATCACATATAATTTCT+AGG - chr4_4:37397428-37397447 None:intergenic 20.0%
!! AAGGTATACATACTTTAATA+TGG + chr4_4:37397576-37397595 Msa0679560:three_prime_UTR 20.0%
!! TACATACTTTAATATGGTAT+TGG + chr4_4:37397582-37397601 Msa0679560:three_prime_UTR 20.0%
!! AGAAAGATTAATGGAACTTT+TGG - chr4_4:37391629-37391648 None:intergenic 25.0%
! TGCAATTAATTAGTAGACAA+AGG - chr4_4:37391688-37391707 None:intergenic 25.0%
! GTCTACTAATTAATTGCAAA+TGG + chr4_4:37391690-37391709 Msa0679560:five_prime_UTR 25.0%
!!! TTTATTTTGCCATGATTTTC+AGG + chr4_4:37391986-37392005 Msa0679560:intron 25.0%
! AGAATTAATTCTGACAGATA+TGG + chr4_4:37392190-37392209 Msa0679560:exon 25.0%
!! AATATTGAATCTAGTTCAAG+TGG + chr4_4:37392989-37393008 Msa0679560:CDS 25.0%
! CGGTACATATTTATTAATTG+TGG + chr4_4:37393233-37393252 Msa0679560:intron 25.0%
! ATAAAGATTGAGACAAGAAA+AGG + chr4_4:37393432-37393451 Msa0679560:intron 25.0%
! TGAAAATATATGTTGAGGAA+AGG + chr4_4:37393504-37393523 Msa0679560:intron 25.0%
! GAAAATATATGTTGAGGAAA+GGG + chr4_4:37393505-37393524 Msa0679560:intron 25.0%
! TAATGTCAGAGAGAATAATT+TGG + chr4_4:37393561-37393580 Msa0679560:intron 25.0%
! AATGTCAGAGAGAATAATTT+GGG + chr4_4:37393562-37393581 Msa0679560:intron 25.0%
! ACTCACATAAGAAAGAAATT+TGG - chr4_4:37393745-37393764 None:intergenic 25.0%
! TAAGCACATATGACATATTA+AGG + chr4_4:37393802-37393821 Msa0679560:intron 25.0%
! AAGCACATATGACATATTAA+GGG + chr4_4:37393803-37393822 Msa0679560:intron 25.0%
! ATATGACATATTAAGGGAAA+TGG + chr4_4:37393809-37393828 Msa0679560:intron 25.0%
! AAAATAACAACGTTGATCTA+AGG - chr4_4:37394188-37394207 None:intergenic 25.0%
! AGTAATAGTTTCATTGTAGA+AGG + chr4_4:37394412-37394431 Msa0679560:intron 25.0%
! GGAGTAATTTAAATACTTAC+GGG - chr4_4:37395072-37395091 None:intergenic 25.0%
! ATAACTCTAGACTTATAGAA+TGG - chr4_4:37395093-37395112 None:intergenic 25.0%
!! TTATGAATCAAAAGCTTGTT+TGG - chr4_4:37395158-37395177 None:intergenic 25.0%
! ATATGATTAATTCAGTTGAG+TGG - chr4_4:37395541-37395560 None:intergenic 25.0%
! TTATTAACTTACGTTGTACA+AGG + chr4_4:37396014-37396033 Msa0679560:intron 25.0%
! TATTAACTTACGTTGTACAA+GGG + chr4_4:37396015-37396034 Msa0679560:intron 25.0%
! CCATCTTTGTATTATTGTAA+TGG - chr4_4:37396051-37396070 None:intergenic 25.0%
! CCATTACAATAATACAAAGA+TGG + chr4_4:37396048-37396067 Msa0679560:intron 25.0%
! TACAATAATACAAAGATGGT+AGG + chr4_4:37396052-37396071 Msa0679560:intron 25.0%
! ACAATAATACAAAGATGGTA+GGG + chr4_4:37396053-37396072 Msa0679560:intron 25.0%
!!! AGAATTTTGTTTCAATCGAA+AGG + chr4_4:37396147-37396166 Msa0679560:intron 25.0%
!!! GAATTTTGTTTCAATCGAAA+GGG + chr4_4:37396148-37396167 Msa0679560:intron 25.0%
! ACATATCAATTCTACAAAAG+TGG - chr4_4:37396229-37396248 None:intergenic 25.0%
!! CAAAATCACAGGATTTTAAA+GGG - chr4_4:37396344-37396363 None:intergenic 25.0%
!! ACAAAATCACAGGATTTTAA+AGG - chr4_4:37396345-37396364 None:intergenic 25.0%
!! TAAAATCCTGTGATTTTGTA+TGG + chr4_4:37396346-37396365 Msa0679560:intron 25.0%
!! AAAATCCTGTGATTTTGTAT+GGG + chr4_4:37396347-37396366 Msa0679560:intron 25.0%
!! TACTAAGATTTTGCCTATTT+TGG + chr4_4:37396391-37396410 Msa0679560:intron 25.0%
!! ACTAAGATTTTGCCTATTTT+GGG + chr4_4:37396392-37396411 Msa0679560:intron 25.0%
!!! TCTCTTTAAGTTTTTAATGC+AGG + chr4_4:37396616-37396635 Msa0679560:intron 25.0%
! TGATGTTGACATTGAATTAT+TGG - chr4_4:37396864-37396883 None:intergenic 25.0%
! TTTCATTTCCACTCAATAAA+GGG - chr4_4:37397078-37397097 None:intergenic 25.0%
!! TTTTCATTTCCACTCAATAA+AGG - chr4_4:37397079-37397098 None:intergenic 25.0%
! TTGATATTGAAAACAGAAAG+AGG + chr4_4:37397371-37397390 Msa0679560:CDS 25.0%
! TTATATAATAAGCGTCTGTT+TGG - chr4_4:37397521-37397540 None:intergenic 25.0%
! AATACAAATTACATTCATGC+AGG - chr4_4:37397691-37397710 None:intergenic 25.0%
!! GCATGAATGTAATTTGTATT+TGG + chr4_4:37397691-37397710 Msa0679560:three_prime_UTR 25.0%
!! TTGCTAGCTCTATTATGATT+GGG - chr4_4:37391586-37391605 None:intergenic 30.0%
!! ATTGCTAGCTCTATTATGAT+TGG - chr4_4:37391587-37391606 None:intergenic 30.0%
! AGATTAATGGAACTTTTGGA+GGG - chr4_4:37391625-37391644 None:intergenic 30.0%
! AAGATTAATGGAACTTTTGG+AGG - chr4_4:37391626-37391645 None:intergenic 30.0%
ATGAAAACAAAATCACATGG+TGG + chr4_4:37392035-37392054 Msa0679560:five_prime_UTR 30.0%
!! AAGCTTGTTAATTTGAAGCT+TGG - chr4_4:37392070-37392089 None:intergenic 30.0%
ACACACATAAACCAAAAAGA+AGG + chr4_4:37392100-37392119 Msa0679560:five_prime_UTR 30.0%
TTAACGTGTAATTTGGATTG+TGG - chr4_4:37392144-37392163 None:intergenic 30.0%
! CACGTTAAAGAATTTTCGTA+CGG + chr4_4:37392156-37392175 Msa0679560:five_prime_UTR 30.0%
! ATGTTTTGTGTTGGATTTTG+TGG - chr4_4:37392329-37392348 None:intergenic 30.0%
TCTTAATGAAGTTGTGAATG+TGG + chr4_4:37392895-37392914 Msa0679560:CDS 30.0%
GTAATAACAACAAAGAGAAG+AGG + chr4_4:37392960-37392979 Msa0679560:CDS 30.0%
TATTGAAAGCCCAAAATTTG+TGG - chr4_4:37393151-37393170 None:intergenic 30.0%
! AACATGAAACTGACTCAATT+GGG - chr4_4:37393593-37393612 None:intergenic 30.0%
! AAACATGAAACTGACTCAAT+TGG - chr4_4:37393594-37393613 None:intergenic 30.0%
TCTCACTCTCAATCAATAAT+GGG - chr4_4:37393646-37393665 None:intergenic 30.0%
TTCTCACTCTCAATCAATAA+TGG - chr4_4:37393647-37393666 None:intergenic 30.0%
ATTCATAAACACACTCATGA+TGG + chr4_4:37393717-37393736 Msa0679560:intron 30.0%
TTCATAAACACACTCATGAT+GGG + chr4_4:37393718-37393737 Msa0679560:intron 30.0%
AGATCTAACAATCTTCAAAG+TGG - chr4_4:37393862-37393881 None:intergenic 30.0%
!! TTATTTTACCATGGATTTGC+CGG + chr4_4:37393926-37393945 Msa0679560:intron 30.0%
! ATTTTCGTGATTCATTCTTG+AGG + chr4_4:37394110-37394129 Msa0679560:intron 30.0%
TAGCAGTCATCTTAACATAA+TGG + chr4_4:37394149-37394168 Msa0679560:intron 30.0%
! AATTTTGTCAAACTCACTAC+AGG + chr4_4:37394587-37394606 Msa0679560:intron 30.0%
!!! ACTCTTGTTTTGAACAATGT+AGG + chr4_4:37394673-37394692 Msa0679560:intron 30.0%
ATATCACACTTTGCATTTGA+TGG - chr4_4:37394724-37394743 None:intergenic 30.0%
TTAAGTTAGAAGGTTCTTCT+AGG + chr4_4:37394900-37394919 Msa0679560:CDS 30.0%
!! TTTTCAAGAATGCCACTTAA+TGG - chr4_4:37395118-37395137 None:intergenic 30.0%
TGCATGACTTGACAAATAAA+AGG + chr4_4:37395338-37395357 Msa0679560:intron 30.0%
CAACGTAAGTTAATAACAAG+AGG - chr4_4:37396010-37396029 None:intergenic 30.0%
ATTAACTTACGTTGTACAAG+GGG + chr4_4:37396016-37396035 Msa0679560:intron 30.0%
CAATAATACAAAGATGGTAG+GGG + chr4_4:37396054-37396073 Msa0679560:intron 30.0%
AATAATACAAAGATGGTAGG+GGG + chr4_4:37396055-37396074 Msa0679560:intron 30.0%
AAAATCGCAATCAAAATCGA+AGG + chr4_4:37396192-37396211 Msa0679560:intron 30.0%
!! AGGATTTTAAAGGGTTTTGA+AGG - chr4_4:37396335-37396354 None:intergenic 30.0%
TAAAACCCATACAAAATCAC+AGG - chr4_4:37396355-37396374 None:intergenic 30.0%
TGAATAAAGTCTCAAAATCC+TGG + chr4_4:37396444-37396463 Msa0679560:intron 30.0%
! TCTCAAAATCCTGGATTTTA+GGG + chr4_4:37396453-37396472 Msa0679560:intron 30.0%
! CTGATTTTGTATTCTCAAAC+TGG - chr4_4:37396524-37396543 None:intergenic 30.0%
! TTTTAATGCAGGTATCTAAC+TGG + chr4_4:37396627-37396646 Msa0679560:intron 30.0%
AAGTACATTTCTTCAACCAT+TGG - chr4_4:37396683-37396702 None:intergenic 30.0%
AATGGTTGAAGAAATGTACT+TGG + chr4_4:37396682-37396701 Msa0679560:CDS 30.0%
TGATCTATTTGTGTTATCCT+TGG - chr4_4:37396741-37396760 None:intergenic 30.0%
AGGCATAATCATGACAAAAA+TGG + chr4_4:37397049-37397068 Msa0679560:CDS 30.0%
AGTGGAAATGAAAATCATCA+TGG + chr4_4:37397085-37397104 Msa0679560:CDS 30.0%
AATGAAAATCATCATGGTGA+TGG + chr4_4:37397091-37397110 Msa0679560:CDS 30.0%
TCTCAATGGAAGATATTAGA+AGG + chr4_4:37397125-37397144 Msa0679560:CDS 30.0%
! AGAGGGATATTTTCATTATG+AGG - chr4_4:37397217-37397236 None:intergenic 30.0%
CTCTCTCAGAATTTACATTT+AGG + chr4_4:37397259-37397278 Msa0679560:CDS 30.0%
TCTCAGAATTTACATTTAGG+AGG + chr4_4:37397262-37397281 Msa0679560:CDS 30.0%
CTCAGAATTTACATTTAGGA+GGG + chr4_4:37397263-37397282 Msa0679560:CDS 30.0%
!! TAATTTGTTCCTGAATGAGA+AGG - chr4_4:37397343-37397362 None:intergenic 30.0%
TTGAAGTTTCAACAAAATCC+TGG + chr4_4:37397462-37397481 Msa0679560:three_prime_UTR 30.0%
TGAAGTTTCAACAAAATCCT+GGG + chr4_4:37397463-37397482 Msa0679560:three_prime_UTR 30.0%
!! TTATAAGACTCAAGTTGAGT+TGG + chr4_4:37397541-37397560 Msa0679560:three_prime_UTR 30.0%
! ATGGTATTGGAAAATTAACC+AGG + chr4_4:37397595-37397614 Msa0679560:three_prime_UTR 30.0%
AGATATGAAAGTGATGTGTA+TGG + chr4_4:37397782-37397801 Msa0679560:three_prime_UTR 30.0%
GATATGAAAGTGATGTGTAT+GGG + chr4_4:37397783-37397802 Msa0679560:three_prime_UTR 30.0%
!! TGCTAGCTCTATTATGATTG+GGG - chr4_4:37391585-37391604 None:intergenic 35.0%
GAAGAAAAAAGTAGCTAGCA+AGG - chr4_4:37391812-37391831 None:intergenic 35.0%
GATTTCAAGCAAGTAAAGTC+CGG - chr4_4:37391884-37391903 None:intergenic 35.0%
GATGTTGATCCTGAAAATCA+TGG - chr4_4:37391998-37392017 None:intergenic 35.0%
GTACGTAGTTTGGATTCATA+AGG - chr4_4:37392292-37392311 None:intergenic 35.0%
!! TTATTGCTATTGGTAGCGTT+GGG - chr4_4:37392365-37392384 None:intergenic 35.0%
!! ATTATTGCTATTGGTAGCGT+TGG - chr4_4:37392366-37392385 None:intergenic 35.0%
AACGCTACCAATAGCAATAA+TGG + chr4_4:37392365-37392384 Msa0679560:CDS 35.0%
GAAACTTCATATGGTTGTGT+AGG - chr4_4:37392512-37392531 None:intergenic 35.0%
!! TATGAAAACCAATTTGCTGC+GGG - chr4_4:37392697-37392716 None:intergenic 35.0%
!! CTATGAAAACCAATTTGCTG+CGG - chr4_4:37392698-37392717 None:intergenic 35.0%
!!! ACCATGAACGGTGTTATTTT+TGG + chr4_4:37392842-37392861 Msa0679560:CDS 35.0%
TGAAGTTGTGAATGTGGATA+AGG + chr4_4:37392901-37392920 Msa0679560:CDS 35.0%
GAAGTTGTGAATGTGGATAA+GGG + chr4_4:37392902-37392921 Msa0679560:CDS 35.0%
AATCATCAAAGGAGAATCTG+TGG + chr4_4:37392925-37392944 Msa0679560:CDS 35.0%
! ATTGAATCTAGTTCAAGTGG+TGG + chr4_4:37392992-37393011 Msa0679560:CDS 35.0%
AGAAAAGGACAGAAATTGAC+AGG + chr4_4:37393447-37393466 Msa0679560:intron 35.0%
TCAGAGAGAATAATTTGGGT+CGG + chr4_4:37393566-37393585 Msa0679560:intron 35.0%
!! CAATCAATAATGGGTTCACT+TGG - chr4_4:37393637-37393656 None:intergenic 35.0%
GAGAGTGAGAAGAAAAGTAA+AGG + chr4_4:37393656-37393675 Msa0679560:intron 35.0%
TCCATGGTAAAATAAGTGCA+GGG - chr4_4:37393921-37393940 None:intergenic 35.0%
ATCCATGGTAAAATAAGTGC+AGG - chr4_4:37393922-37393941 None:intergenic 35.0%
ATGATATGTATAGCGAGGAA+TGG + chr4_4:37393983-37394002 Msa0679560:intron 35.0%
TGATATGTATAGCGAGGAAT+GGG + chr4_4:37393984-37394003 Msa0679560:intron 35.0%
ATATCCATTCGCGATGATTT+CGG - chr4_4:37394013-37394032 None:intergenic 35.0%
CGAATGGATATATCATGATG+TGG + chr4_4:37394022-37394041 Msa0679560:intron 35.0%
CAACACTTTAAGTGCATGAT+CGG - chr4_4:37394614-37394633 None:intergenic 35.0%
GAATGATTCATAGCAATGCT+TGG + chr4_4:37394975-37394994 Msa0679560:CDS 35.0%
CTAGAGTTATGTCCATTAAG+TGG + chr4_4:37395103-37395122 Msa0679560:intron 35.0%
! ATAATTGAGGTGTCTGTGTT+TGG + chr4_4:37395572-37395591 Msa0679560:intron 35.0%
TCTTGCAAGCATAACCTTAT+CGG - chr4_4:37395848-37395867 None:intergenic 35.0%
!!! TTCTGTACTTTTAAGGCTGT+TGG + chr4_4:37395908-37395927 Msa0679560:intron 35.0%
ACTACTGAGACATTCTAACA+AGG + chr4_4:37396113-37396132 Msa0679560:intron 35.0%
CTATAGCAGAATCCCAAAAT+AGG - chr4_4:37396407-37396426 None:intergenic 35.0%
CTATAGATTTGAGTCGTTGA+AGG + chr4_4:37396421-37396440 Msa0679560:intron 35.0%
! GTCTCAAAATCCTGGATTTT+AGG + chr4_4:37396452-37396471 Msa0679560:intron 35.0%
!!! CTGGATTTTAGGGTTTAAGT+CGG + chr4_4:37396463-37396482 Msa0679560:intron 35.0%
!!! TGGATTTTAGGGTTTAAGTC+GGG + chr4_4:37396464-37396483 Msa0679560:intron 35.0%
AGAGAGTAAAACACCTCTAA+AGG - chr4_4:37396601-37396620 None:intergenic 35.0%
AATGTACTTGGAAGAAACCA+AGG + chr4_4:37396694-37396713 Msa0679560:CDS 35.0%
TTGAAATCACTGTTGGAGAA+AGG - chr4_4:37396838-37396857 None:intergenic 35.0%
TTGGAACTTGAAATCACTGT+TGG - chr4_4:37396845-37396864 None:intergenic 35.0%
TTCAATGTCAACATCACCAA+TGG + chr4_4:37396868-37396887 Msa0679560:CDS 35.0%
TCAATGTCAACATCACCAAT+GGG + chr4_4:37396869-37396888 Msa0679560:CDS 35.0%
GAAACCAGAATTGGATTGAA+AGG - chr4_4:37396909-37396928 None:intergenic 35.0%
TGAAAGGAAACTACCTTGAT+GGG - chr4_4:37396975-37396994 None:intergenic 35.0%
TTGAAAGGAAACTACCTTGA+TGG - chr4_4:37396976-37396995 None:intergenic 35.0%
TCAAGGTAGTTTCCTTTCAA+TGG + chr4_4:37396976-37396995 Msa0679560:CDS 35.0%
TAGTTTCCTTTCAATGGACA+TGG + chr4_4:37396982-37397001 Msa0679560:CDS 35.0%
TCAATTCCATGTCCATTGAA+AGG - chr4_4:37396991-37397010 None:intergenic 35.0%
AATGGATACCCTTTATTGAG+TGG + chr4_4:37397067-37397086 Msa0679560:CDS 35.0%
!! AATCATCATGGTGATGGTTA+TGG + chr4_4:37397097-37397116 Msa0679560:CDS 35.0%
TTAGAGAAACACCATTTCCA+TGG - chr4_4:37397183-37397202 None:intergenic 35.0%
AATGGTGTTTCTCTAACTCT+TGG + chr4_4:37397187-37397206 Msa0679560:CDS 35.0%
GAAGTTTCAACAAAATCCTG+GGG + chr4_4:37397464-37397483 Msa0679560:three_prime_UTR 35.0%
AAGTTTCAACAAAATCCTGG+GGG + chr4_4:37397465-37397484 Msa0679560:three_prime_UTR 35.0%
!! CAAGTTGAGTTGGATTAAGT+TGG + chr4_4:37397551-37397570 Msa0679560:three_prime_UTR 35.0%
GGAAAATTAACCAGGTATGT+AGG + chr4_4:37397603-37397622 Msa0679560:three_prime_UTR 35.0%
ATTTGGTAAGTACGTAGATG+TGG + chr4_4:37397708-37397727 Msa0679560:three_prime_UTR 35.0%
! GATGTGGTGGAAATCATTAA+AGG + chr4_4:37397724-37397743 Msa0679560:three_prime_UTR 35.0%
AAAGTGATGTGTATGGGATT+TGG + chr4_4:37397789-37397808 Msa0679560:three_prime_UTR 35.0%
TTCCACACGCAAAATTCACT+TGG + chr4_4:37391534-37391553 Msa0679560:five_prime_UTR 40.0%
! TAGCTCTATTATGATTGGGG+TGG - chr4_4:37391582-37391601 None:intergenic 40.0%
!! AATGGAACTTTTGGAGGGTT+TGG - chr4_4:37391620-37391639 None:intergenic 40.0%
AGGAGGGGAAGAAAGATTAA+TGG - chr4_4:37391638-37391657 None:intergenic 40.0%
GATATGGCAACGTACTTTCA+TGG + chr4_4:37392206-37392225 Msa0679560:exon 40.0%
TCAGAGTAAGGTACGTAGTT+TGG - chr4_4:37392302-37392321 None:intergenic 40.0%
AAACTACGTACCTTACTCTG+AGG + chr4_4:37392301-37392320 Msa0679560:CDS 40.0%
! TTTTGTGGTTCCTCAGAGTA+AGG - chr4_4:37392314-37392333 None:intergenic 40.0%
!! GCGAAAAGCATGTTTTGTGT+TGG - chr4_4:37392338-37392357 None:intergenic 40.0%
GGGAGAACCATTATTGCTAT+TGG - chr4_4:37392375-37392394 None:intergenic 40.0%
!! TGGTGTTGATTGAGTGATGA+AGG - chr4_4:37392431-37392450 None:intergenic 40.0%
GAATAGTAACTCCAAGCAAG+TGG - chr4_4:37392451-37392470 None:intergenic 40.0%
ATTCCACCTTCCAACTTTCA+TGG + chr4_4:37392467-37392486 Msa0679560:CDS 40.0%
TTGGATCCATGAAAGTTGGA+AGG - chr4_4:37392476-37392495 None:intergenic 40.0%
! AGTGTTGGATCCATGAAAGT+TGG - chr4_4:37392480-37392499 None:intergenic 40.0%
! ATATGGTTGTGTAGGAGTGT+CGG - chr4_4:37392504-37392523 None:intergenic 40.0%
TGGAAGGTGGAAACTTCATA+TGG - chr4_4:37392521-37392540 None:intergenic 40.0%
TGATCCCCACATGTTATAGT+GGG - chr4_4:37392579-37392598 None:intergenic 40.0%
GCCAAAAATAACACCGTTCA+TGG - chr4_4:37392846-37392865 None:intergenic 40.0%
GTGGATAAGGGAATCATCAA+AGG + chr4_4:37392914-37392933 Msa0679560:CDS 40.0%
ATCAAAGGAGAATCTGTGGA+AGG + chr4_4:37392929-37392948 Msa0679560:CDS 40.0%
! AGTGGTGGAAGAGAAAACAA+TGG + chr4_4:37393007-37393026 Msa0679560:CDS 40.0%
GTGGAAGAGAAAACAATGGA+GGG + chr4_4:37393011-37393030 Msa0679560:CDS 40.0%
AGCAAAAAAGCCACTTGATC+TGG + chr4_4:37393538-37393557 Msa0679560:intron 40.0%
TCTGACATTACCAGATCAAG+TGG - chr4_4:37393551-37393570 None:intergenic 40.0%
CAGAGAGAATAATTTGGGTC+GGG + chr4_4:37393567-37393586 Msa0679560:intron 40.0%
GATCACATACAACAGCTGTA+TGG + chr4_4:37393831-37393850 Msa0679560:intron 40.0%
!!! TCCCTGCACTTATTTTACCA+TGG + chr4_4:37393917-37393936 Msa0679560:intron 40.0%
ATGTTACCATAGATCCACTC+CGG - chr4_4:37393948-37393967 None:intergenic 40.0%
GGGAAATGATATGTATAGCG+AGG + chr4_4:37393978-37393997 Msa0679560:intron 40.0%
TTATGGGTAGAAAACACGCT+AGG - chr4_4:37394068-37394087 None:intergenic 40.0%
GAACAATGTAGGTAGAGCTA+AGG + chr4_4:37394684-37394703 Msa0679560:intron 40.0%
TCACACTTTGCATTTGATGG+TGG - chr4_4:37394721-37394740 None:intergenic 40.0%
TCATCATTTGAGCAAGCAAC+AGG + chr4_4:37394743-37394762 Msa0679560:CDS 40.0%
TTTGAGCAAGCAACAGGATA+TGG + chr4_4:37394749-37394768 Msa0679560:CDS 40.0%
TGAGATTGTCTTCAAGGCTA+GGG - chr4_4:37394795-37394814 None:intergenic 40.0%
TTGAGATTGTCTTCAAGGCT+AGG - chr4_4:37394796-37394815 None:intergenic 40.0%
!! CTGCTTTGAGATTGTCTTCA+AGG - chr4_4:37394801-37394820 None:intergenic 40.0%
TAAGACAGCTAGCAAGACTT+TGG + chr4_4:37394856-37394875 Msa0679560:CDS 40.0%
AAGACAGCTAGCAAGACTTT+GGG + chr4_4:37394857-37394876 Msa0679560:CDS 40.0%
TTTGGGTGAAGATGATTGCT+TGG + chr4_4:37394874-37394893 Msa0679560:CDS 40.0%
TTGGGTGAAGATGATTGCTT+GGG + chr4_4:37394875-37394894 Msa0679560:CDS 40.0%
TGCTTGGGTGTTAAGTTAGA+AGG + chr4_4:37394890-37394909 Msa0679560:CDS 40.0%
TAGAAGGTTCTTCTAGGCTT+CGG + chr4_4:37394906-37394925 Msa0679560:CDS 40.0%
TGATTCATAGCAATGCTTGG+AGG + chr4_4:37394978-37394997 Msa0679560:CDS 40.0%
AGAACAGAAACAGCTCTTTC+AGG - chr4_4:37395019-37395038 None:intergenic 40.0%
ATAACCTTATCGGAGTCCTT+GGG - chr4_4:37395838-37395857 None:intergenic 40.0%
GTTATGCTTGCAAGACAAAC+TGG + chr4_4:37395853-37395872 Msa0679560:CDS 40.0%
CAAGACAAACTGGACTTACT+AGG + chr4_4:37395863-37395882 Msa0679560:CDS 40.0%
CGACTTAAACCCTAAAATCC+AGG - chr4_4:37396465-37396484 None:intergenic 40.0%
GCTAATTAGCAAGAGGGATA+TGG - chr4_4:37396550-37396569 None:intergenic 40.0%
CAATGATAGAGCTTGAGTCT+TGG + chr4_4:37396575-37396594 Msa0679560:intron 40.0%
ATTATTCTCCTCTTGCTCCT+TGG - chr4_4:37396714-37396733 None:intergenic 40.0%
AGAGGAGAATAATGACTCCA+AGG + chr4_4:37396721-37396740 Msa0679560:CDS 40.0%
! TCACTGTTGGAGAAAGGTTT+TGG - chr4_4:37396832-37396851 None:intergenic 40.0%
TGCAAGATGGAAACCAGAAT+TGG - chr4_4:37396918-37396937 None:intergenic 40.0%
!! AATTCTGGTTTCCATCTTGC+AGG + chr4_4:37396917-37396936 Msa0679560:CDS 40.0%
AGTCCAAAAAACTCCCATCA+AGG + chr4_4:37396959-37396978 Msa0679560:CDS 40.0%
!!! CTACCTTGATGGGAGTTTTT+TGG - chr4_4:37396965-37396984 None:intergenic 40.0%
TTCAACTTCAAACTCTGTGG+TGG - chr4_4:37397029-37397048 None:intergenic 40.0%
CCTTTCAACTTCAAACTCTG+TGG - chr4_4:37397032-37397051 None:intergenic 40.0%
! CCACAGAGTTTGAAGTTGAA+AGG + chr4_4:37397029-37397048 Msa0679560:CDS 40.0%
TGGTTATGGATCACTCTCAA+TGG + chr4_4:37397111-37397130 Msa0679560:CDS 40.0%
TTAGTGAGCAATTAGCTCCT+AGG + chr4_4:37397155-37397174 Msa0679560:CDS 40.0%
CTGAGAGAGAAATCCATGTT+GGG - chr4_4:37397248-37397267 None:intergenic 40.0%
TCTGAGAGAGAAATCCATGT+TGG - chr4_4:37397249-37397268 None:intergenic 40.0%
! ATGAGAAGGAGTAGTGTTGA+TGG - chr4_4:37397329-37397348 None:intergenic 40.0%
AACACTACTCCTTCTCATTC+AGG + chr4_4:37397331-37397350 Msa0679560:CDS 40.0%
!! GAGTTGGATTAAGTTGGAGA+AGG + chr4_4:37397557-37397576 Msa0679560:three_prime_UTR 40.0%
TCATTCAACTCCTACATACC+TGG - chr4_4:37397616-37397635 None:intergenic 40.0%
! GTCCAAGTGAATTTTGCGTG+TGG - chr4_4:37391539-37391558 None:intergenic 45.0%
AGTAGACAAAGGCAGCTACA+AGG - chr4_4:37391677-37391696 None:intergenic 45.0%
!! CAGTTCTGAAATCCAACCGT+CGG + chr4_4:37392244-37392263 Msa0679560:CDS 45.0%
GTCTGTAAACCTTCTACCGA+CGG - chr4_4:37392263-37392282 None:intergenic 45.0%
CTCAATCAACACCACTTGCT+TGG + chr4_4:37392437-37392456 Msa0679560:CDS 45.0%
GATCCATGAAAGTTGGAAGG+TGG - chr4_4:37392473-37392492 None:intergenic 45.0%
! CTTCCATCCATTTTCCTCCT+CGG + chr4_4:37392535-37392554 Msa0679560:CDS 45.0%
TCGTCCCCACTATAACATGT+GGG + chr4_4:37392571-37392590 Msa0679560:CDS 45.0%
GATCCCCACATGTTATAGTG+GGG - chr4_4:37392578-37392597 None:intergenic 45.0%
CTGATCCCCACATGTTATAG+TGG - chr4_4:37392580-37392599 None:intergenic 45.0%
CACTATAACATGTGGGGATC+AGG + chr4_4:37392578-37392597 Msa0679560:CDS 45.0%
CATAGACCAGTTTATCAGCG+TGG + chr4_4:37392713-37392732 Msa0679560:CDS 45.0%
GACAAACCACGCTGATAAAC+TGG - chr4_4:37392722-37392741 None:intergenic 45.0%
AGATACCTCAATCTCACCAG+AGG - chr4_4:37392783-37392802 None:intergenic 45.0%
! TGGTGAGATTGAGGTATCTC+CGG + chr4_4:37392784-37392803 Msa0679560:CDS 45.0%
AAAGGAGAATCTGTGGAAGG+AGG + chr4_4:37392932-37392951 Msa0679560:CDS 45.0%
GGTGGAAGAGAAAACAATGG+AGG + chr4_4:37393010-37393029 Msa0679560:CDS 45.0%
! GCTTGTTAGCATGCTAGATG+AGG + chr4_4:37393093-37393112 Msa0679560:CDS 45.0%
GAAGGAATGCACAACTCACA+TGG + chr4_4:37394430-37394449 Msa0679560:intron 45.0%
!! CTGTTTCTGTTCTTCGTGCT+TGG + chr4_4:37395026-37395045 Msa0679560:CDS 45.0%
TTATCCCAAGGACTCCGATA+AGG + chr4_4:37395831-37395850 Msa0679560:CDS 45.0%
CATAACCTTATCGGAGTCCT+TGG - chr4_4:37395839-37395858 None:intergenic 45.0%
AACTGGACTTACTAGGAGTC+AGG + chr4_4:37395870-37395889 Msa0679560:CDS 45.0%
GAGCTGGCTAATTAGCAAGA+GGG - chr4_4:37396556-37396575 None:intergenic 45.0%
TGAGCTGGCTAATTAGCAAG+AGG - chr4_4:37396557-37396576 None:intergenic 45.0%
CTCAAGCTCTATCATTGAGC+TGG - chr4_4:37396572-37396591 None:intergenic 45.0%
AGTTCGCTTGTGGAAACCAA+TGG + chr4_4:37396664-37396683 Msa0679560:CDS 45.0%
ATGTCAACATCACCAATGGG+AGG + chr4_4:37396872-37396891 Msa0679560:CDS 45.0%
GGGTCCTTTCAATCCAATTC+TGG + chr4_4:37396902-37396921 Msa0679560:CDS 45.0%
CATCAGATGATCCTGCAAGA+TGG - chr4_4:37396931-37396950 None:intergenic 45.0%
CAGGATCATCTGATGTGCAA+AGG + chr4_4:37396936-37396955 Msa0679560:CDS 45.0%
CAATTAGCTCCTAGGTTCCA+TGG + chr4_4:37397163-37397182 Msa0679560:CDS 45.0%
ACACCATTTCCATGGAACCT+AGG - chr4_4:37397175-37397194 None:intergenic 45.0%
!! CATGTTGGGTTGAAGAGAGA+GGG - chr4_4:37397234-37397253 None:intergenic 45.0%
AGGAGGGACGATTGATGAAA+TGG + chr4_4:37397279-37397298 Msa0679560:CDS 45.0%
GGAGGGACGATTGATGAAAT+GGG + chr4_4:37397280-37397299 Msa0679560:CDS 45.0%
GATTTCGTCAAACTCAGCGT+TGG + chr4_4:37397494-37397513 Msa0679560:three_prime_UTR 45.0%
TGGTAAGTACGTAGATGTGG+TGG + chr4_4:37397711-37397730 Msa0679560:three_prime_UTR 45.0%
!! GATAAAAAAAAAAAAAAAAA+AGG - chr4_4:37395235-37395254 None:intergenic 5.0%
GACAAAGGCAGCTACAAGGA+TGG - chr4_4:37391673-37391692 None:intergenic 50.0%
GAAATCCAACCGTCGGTAGA+AGG + chr4_4:37392251-37392270 Msa0679560:CDS 50.0%
GTAAACCTTCTACCGACGGT+TGG - chr4_4:37392259-37392278 None:intergenic 50.0%
TTGAATCCATGAAGCGCGTG+GGG - chr4_4:37392395-37392414 None:intergenic 50.0%
CTTGAATCCATGAAGCGCGT+GGG - chr4_4:37392396-37392415 None:intergenic 50.0%
ACTTGAATCCATGAAGCGCG+TGG - chr4_4:37392397-37392416 None:intergenic 50.0%
! ATTGAGTGATGAAGGCGCGT+GGG - chr4_4:37392423-37392442 None:intergenic 50.0%
!! TGTAGGAGTGTCGGTAGTGT+TGG - chr4_4:37392495-37392514 None:intergenic 50.0%
GGAGGAAAATGGATGGAAGG+TGG - chr4_4:37392534-37392553 None:intergenic 50.0%
CGAGGAGGAAAATGGATGGA+AGG - chr4_4:37392537-37392556 None:intergenic 50.0%
TAGCCGAGGAGGAAAATGGA+TGG - chr4_4:37392541-37392560 None:intergenic 50.0%
! CACATGTTATAGTGGGGACG+AGG - chr4_4:37392572-37392591 None:intergenic 50.0%
CTCGTCCCCACTATAACATG+TGG + chr4_4:37392570-37392589 Msa0679560:CDS 50.0%
CGTCCCCACTATAACATGTG+GGG + chr4_4:37392572-37392591 Msa0679560:CDS 50.0%
GTTGCTGTGACAGCGTTATC+AGG - chr4_4:37392614-37392633 None:intergenic 50.0%
! GGTGAGATTGAGGTATCTCC+GGG + chr4_4:37392785-37392804 Msa0679560:CDS 50.0%
GGTGGAGTTTCGACCATGAA+CGG + chr4_4:37392830-37392849 Msa0679560:CDS 50.0%
TTACCATGGATTTGCCGGAG+TGG + chr4_4:37393931-37393950 Msa0679560:intron 50.0%
GATTTGCCGGAGTGGATCTA+TGG + chr4_4:37393939-37393958 Msa0679560:intron 50.0%
GATGCCGAAATCATCGCGAA+TGG + chr4_4:37394006-37394025 Msa0679560:intron 50.0%
TGGGTAGAAAACACGCTAGG+AGG - chr4_4:37394065-37394084 None:intergenic 50.0%
TGTGACCTGCAGTTATCCCA+AGG + chr4_4:37395819-37395838 Msa0679560:intron 50.0%
! GCTTGAGTCTTGGCCTTTAG+AGG + chr4_4:37396585-37396604 Msa0679560:intron 50.0%
TAAACGCCAGAGTTCGCTTG+TGG + chr4_4:37396654-37396673 Msa0679560:CDS 50.0%
TGGTTTCCACAAGCGAACTC+TGG - chr4_4:37396663-37396682 None:intergenic 50.0%
GGAAGAAACCAAGGAGCAAG+AGG + chr4_4:37396703-37396722 Msa0679560:CDS 50.0%
ACATCACCAATGGGAGGAGA+AGG + chr4_4:37396878-37396897 Msa0679560:CDS 50.0%
GCTCCTAGGTTCCATGGAAA+TGG + chr4_4:37397169-37397188 Msa0679560:CDS 50.0%
!! CCATGTTGGGTTGAAGAGAG+AGG - chr4_4:37397235-37397254 None:intergenic 50.0%
CCTCTCTCTTCAACCCAACA+TGG + chr4_4:37397232-37397251 Msa0679560:CDS 50.0%
TCTTTCTTCCCCTCCTCGTG+CGG + chr4_4:37391642-37391661 Msa0679560:five_prime_UTR 55.0%
ATGGAATTCCCGCACGAGGA+GGG - chr4_4:37391654-37391673 None:intergenic 55.0%
AAGGATGGAATTCCCGCACG+AGG - chr4_4:37391658-37391677 None:intergenic 55.0%
! TTGAGTGATGAAGGCGCGTG+GGG - chr4_4:37392422-37392441 None:intergenic 55.0%
! GATTGAGTGATGAAGGCGCG+TGG - chr4_4:37392424-37392443 None:intergenic 55.0%
ACGGTAGCCGAGGAGGAAAA+TGG - chr4_4:37392545-37392564 None:intergenic 55.0%
! ATAGTGGGGACGAGGAGTCA+CGG - chr4_4:37392564-37392583 None:intergenic 55.0%
! ATTTGCTGCGGGCGAAACTC+TGG - chr4_4:37392686-37392705 None:intergenic 55.0%
GAGTTTCGCCCGCAGCAAAT+TGG + chr4_4:37392686-37392705 Msa0679560:CDS 55.0%
CTTCGCAGCAAACGCCTTAC+CGG + chr4_4:37392753-37392772 Msa0679560:CDS 55.0%
GATCCACTCCGGCAAATCCA+TGG - chr4_4:37393937-37393956 None:intergenic 55.0%
ACCACCAACTCCGACAACAG+CGG + chr4_4:37394936-37394955 Msa0679560:CDS 55.0%
AATGCTTGGAGGCCTCAGAG+AGG + chr4_4:37394989-37395008 Msa0679560:CDS 55.0%
CTTTCAGGCAAGCCTCTCTG+AGG - chr4_4:37395004-37395023 None:intergenic 55.0%
GGAGTCCTTGGGATAACTGC+AGG - chr4_4:37395827-37395846 None:intergenic 55.0%
TCACCAATGGGAGGAGAAGG+AGG + chr4_4:37396881-37396900 Msa0679560:CDS 55.0%
CACCAATGGGAGGAGAAGGA+GGG + chr4_4:37396882-37396901 Msa0679560:CDS 55.0%
CTTTCTTCCCCTCCTCGTGC+GGG + chr4_4:37391643-37391662 Msa0679560:five_prime_UTR 60.0%
TGGAATTCCCGCACGAGGAG+GGG - chr4_4:37391653-37391672 None:intergenic 60.0%
GATGGAATTCCCGCACGAGG+AGG - chr4_4:37391655-37391674 None:intergenic 60.0%
GCAGCAAACGCCTTACCGGT+CGG + chr4_4:37392757-37392776 Msa0679560:CDS 60.0%
CAATCTCACCAGAGGCCGAC+CGG - chr4_4:37392775-37392794 None:intergenic 60.0%
GTCGGCCTCTGGTGAGATTG+AGG + chr4_4:37392775-37392794 Msa0679560:CDS 60.0%
CCACCAACTCCGACAACAGC+GGG + chr4_4:37394937-37394956 Msa0679560:CDS 60.0%
GACCCTCCTTCTCCTCCCAT+TGG - chr4_4:37396887-37396906 None:intergenic 60.0%
GACGAAATCACGTTGCCCCC+AGG - chr4_4:37397483-37397502 None:intergenic 60.0%
GGTTCTCCCCACGCGCTTCA+TGG + chr4_4:37392386-37392405 Msa0679560:CDS 65.0%
AGGAGTCACGGTAGCCGAGG+AGG - chr4_4:37392552-37392571 None:intergenic 65.0%
ACGAGGAGTCACGGTAGCCG+AGG - chr4_4:37392555-37392574 None:intergenic 65.0%
TCACCAGAGGCCGACCGGTA+AGG - chr4_4:37392770-37392789 None:intergenic 65.0%
! GAGGTATCTCCGGGTAGCCG+TGG + chr4_4:37392794-37392813 Msa0679560:CDS 65.0%
GTATCTCCGGGTAGCCGTGG+AGG + chr4_4:37392797-37392816 Msa0679560:CDS 65.0%
CACCACCTTCCTCGCCTCCA+CGG - chr4_4:37392814-37392833 None:intergenic 65.0%
CCCGCTGTTGTCGGAGTTGG+TGG - chr4_4:37394940-37394959 None:intergenic 65.0%
GTGCCCGCTGTTGTCGGAGT+TGG - chr4_4:37394943-37394962 None:intergenic 65.0%
GCTGCAGTGCCCGCTGTTGT+CGG - chr4_4:37394949-37394968 None:intergenic 65.0%
! CAGCGGGCACTGCAGCAACT+TGG + chr4_4:37394953-37394972 Msa0679560:CDS 65.0%
ACGCCTTACCGGTCGGCCTC+TGG + chr4_4:37392764-37392783 Msa0679560:CDS 70.0%
TCCTCGCCTCCACGGCTACC+CGG - chr4_4:37392806-37392825 None:intergenic 70.0%
GGTAGCCGTGGAGGCGAGGA+AGG + chr4_4:37392806-37392825 Msa0679560:CDS 70.0%
AGCCGTGGAGGCGAGGAAGG+TGG + chr4_4:37392809-37392828 Msa0679560:CDS 70.0%
CGTGGAGGCGAGGAAGGTGG+TGG + chr4_4:37392812-37392831 Msa0679560:CDS 70.0%
TCCGGGTAGCCGTGGAGGCG+AGG + chr4_4:37392802-37392821 Msa0679560:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 37391528 37397855 37391528 ID=Msa0679560;Name=Msa0679560
chr4_4 mRNA 37391528 37397855 37391528 ID=Msa0679560-mRNA-1;Parent=Msa0679560;Name=Msa0679560-mRNA-1;_AED=0.09;_eAED=0.09;_QI=420|1|1|1|0.75|0.6|5|426|711
chr4_4 exon 37391528 37391746 37391528 ID=Msa0679560-mRNA-1:exon:8830;Parent=Msa0679560-mRNA-1
chr4_4 exon 37392008 37393114 37392008 ID=Msa0679560-mRNA-1:exon:8831;Parent=Msa0679560-mRNA-1
chr4_4 exon 37394695 37395071 37394695 ID=Msa0679560-mRNA-1:exon:8832;Parent=Msa0679560-mRNA-1
chr4_4 exon 37395831 37395891 37395831 ID=Msa0679560-mRNA-1:exon:8833;Parent=Msa0679560-mRNA-1
chr4_4 exon 37396638 37397855 37396638 ID=Msa0679560-mRNA-1:exon:8834;Parent=Msa0679560-mRNA-1
chr4_4 five_prime_UTR 37391528 37391746 37391528 ID=Msa0679560-mRNA-1:five_prime_utr;Parent=Msa0679560-mRNA-1
chr4_4 five_prime_UTR 37392008 37392208 37392008 ID=Msa0679560-mRNA-1:five_prime_utr;Parent=Msa0679560-mRNA-1
chr4_4 CDS 37392209 37393114 37392209 ID=Msa0679560-mRNA-1:cds;Parent=Msa0679560-mRNA-1
chr4_4 CDS 37394695 37395071 37394695 ID=Msa0679560-mRNA-1:cds;Parent=Msa0679560-mRNA-1
chr4_4 CDS 37395831 37395891 37395831 ID=Msa0679560-mRNA-1:cds;Parent=Msa0679560-mRNA-1
chr4_4 CDS 37396638 37397429 37396638 ID=Msa0679560-mRNA-1:cds;Parent=Msa0679560-mRNA-1
chr4_4 three_prime_UTR 37397430 37397855 37397430 ID=Msa0679560-mRNA-1:three_prime_utr;Parent=Msa0679560-mRNA-1
Gene Sequence

>Msa0679560

ATGGCAACGTACTTTCATGGCAACAGCAACAGCAACAGTTCTGAAATCCAACCGTCGGTAGAAGGTTTACAGACACTTTACCTTATGAATCCAAACTACGTACCTTACTCTGAGGAACCACAAAATCCAACACAAAACATGCTTTTCGCTAATCCCAACGCTACCAATAGCAATAATGGTTCTCCCCACGCGCTTCATGGATTCAAGTTTCCCCACGCGCCTTCATCACTCAATCAACACCACTTGCTTGGAGTTACTATTCCACCTTCCAACTTTCATGGATCCAACACTACCGACACTCCTACACAACCATATGAAGTTTCCACCTTCCATCCATTTTCCTCCTCGGCTACCGTGACTCCTCGTCCCCACTATAACATGTGGGGATCAGGTAGCTTTCTACCTGATAACGCTGTCACAGCAACGACAACTGATAGATCAGAATGTTCAGATGTCGTTTCTGTGACAGCATCTCCAGAGTTTCGCCCGCAGCAAATTGGTTTTCATAGACCAGTTTATCAGCGTGGTTTGTCTCTCAGTCTTTCTTCGCAGCAAACGCCTTACCGGTCGGCCTCTGGTGAGATTGAGGTATCTCCGGGTAGCCGTGGAGGCGAGGAAGGTGGTGGAGTTTCGACCATGAACGGTGTTATTTTTGGCTCGAAGTATATGAAAGTAGCACAAGAGCTTCTTAATGAAGTTGTGAATGTGGATAAGGGAATCATCAAAGGAGAATCTGTGGAAGGAGGTAATAGTAATAACAACAAAGAGAAGAGGAAAGCAAATATTGAATCTAGTTCAAGTGGTGGAAGAGAAAACAATGGAGGGAAACAAGTAGCTGAATTAAGCACTGCACAAAGACAAGAACTTCAGATGAAGAAGTCAAAGCTTGTTAGCATGCTAGATGAGGTAGAGCTAAGGTACAGACAATACCACCATCAAATGCAAAGTGTGATATCATCATTTGAGCAAGCAACAGGATATGGAGCATCAAAATCTTACACATCCCTAGCCTTGAAGACAATCTCAAAGCAGTTTCGAAGTCTAAAAGATTCAATCTCTTCACAAATTAAGACAGCTAGCAAGACTTTGGGTGAAGATGATTGCTTGGGTGTTAAGTTAGAAGGTTCTTCTAGGCTTCGGTATGTCGACCACCAACTCCGACAACAGCGGGCACTGCAGCAACTTGGAATGATTCATAGCAATGCTTGGAGGCCTCAGAGAGGCTTGCCTGAAAGAGCTGTTTCTGTTCTTCGTGCTTGGCTTTTTGAACATTTCTTGCACCCTTATCCCAAGGACTCCGATAAGGTTATGCTTGCAAGACAAACTGGACTTACTAGGAGTCAGGTATCTAACTGGTTTATAAACGCCAGAGTTCGCTTGTGGAAACCAATGGTTGAAGAAATGTACTTGGAAGAAACCAAGGAGCAAGAGGAGAATAATGACTCCAAGGATAACACAAATAGATCAAAAGAATTAGGTGCCACAAAACTTGATCAAATTAATAATCTTCATTCAAAAGCAGAAAACTTCAACAACCAAAACCTTTCTCCAACAGTGATTTCAAGTTCCAATAATTCAATGTCAACATCACCAATGGGAGGAGAAGGAGGGTCCTTTCAATCCAATTCTGGTTTCCATCTTGCAGGATCATCTGATGTGCAAAGGAGTCCAAAAAACTCCCATCAAGGTAGTTTCCTTTCAATGGACATGGAATTGAAGTCTAATAGAGAGTCCACCACAGAGTTTGAAGTTGAAAGGCATAATCATGACAAAAATGGATACCCTTTATTGAGTGGAAATGAAAATCATCATGGTGATGGTTATGGATCACTCTCAATGGAAGATATTAGAAGGTTTAATGTTAGTGAGCAATTAGCTCCTAGGTTCCATGGAAATGGTGTTTCTCTAACTCTTGGACTACCTCATAATGAAAATATCCCTCTCTCTTCAACCCAACATGGATTTCTCTCTCAGAATTTACATTTAGGAGGGACGATTGATGAAATGGGAAGCAATGAAAATGAGTTTTGTACCATCAACACTACTCCTTCTCATTCAGGAACAAATTATGAGAGTATTGATATTGAAAACAGAAAGAGGTTTGCTGCTCAATTATTGCGAAATTTTGTGACCTAG
Protein sequence

>Msa0679560

MATYFHGNSNSNSSEIQPSVEGLQTLYLMNPNYVPYSEEPQNPTQNMLFANPNATNSNNGSPHALHGFKFPHAPSSLNQHHLLGVTIPPSNFHGSNTTDTPTQPYEVSTFHPFSSSATVTPRPHYNMWGSGSFLPDNAVTATTTDRSECSDVVSVTASPEFRPQQIGFHRPVYQRGLSLSLSSQQTPYRSASGEIEVSPGSRGGEEGGGVSTMNGVIFGSKYMKVAQELLNEVVNVDKGIIKGESVEGGNSNNNKEKRKANIESSSSGGRENNGGKQVAELSTAQRQELQMKKSKLVSMLDEVELRYRQYHHQMQSVISSFEQATGYGASKSYTSLALKTISKQFRSLKDSISSQIKTASKTLGEDDCLGVKLEGSSRLRYVDHQLRQQRALQQLGMIHSNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYLEETKEQEENNDSKDNTNRSKELGATKLDQINNLHSKAENFNNQNLSPTVISSSNNSMSTSPMGGEGGSFQSNSGFHLAGSSDVQRSPKNSHQGSFLSMDMELKSNRESTTEFEVERHNHDKNGYPLLSGNENHHGDGYGSLSMEDIRRFNVSEQLAPRFHGNGVSLTLGLPHNENIPLSSTQHGFLSQNLHLGGTIDEMGSNENEFCTINTTPSHSGTNYESIDIENRKRFAAQLLRNFVT*