AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1445250

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1445250 MtrunA17_Chr4g0025521 95.548 584 26 0 1 584 128 711 0.0 1090
Msa1445250 MtrunA17_Chr7g0267481 50.896 558 231 13 45 584 128 660 1.42e-155 461
Msa1445250 MtrunA17_Chr1g0177751 51.434 558 216 19 49 584 125 649 2.10e-150 447
Msa1445250 MtrunA17_Chr3g0141941 52.412 311 124 8 62 366 143 435 1.09e-96 304
Msa1445250 MtrunA17_Chr1g0155681 58.052 267 97 4 92 350 172 431 1.57e-96 307
Msa1445250 MtrunA17_Chr8g0373801 50.890 281 131 3 90 364 388 667 9.45e-85 281
Msa1445250 MtrunA17_Chr5g0403251 52.518 278 118 5 80 350 329 599 8.08e-80 266
Msa1445250 MtrunA17_Chr8g0387321 52.708 277 118 3 90 360 185 454 2.20e-79 262
Msa1445250 MtrunA17_Chr3g0141931 45.172 290 141 4 83 364 158 437 4.72e-73 240
Msa1445250 MtrunA17_Chr4g0028701 39.506 324 144 5 90 367 245 562 3.08e-65 225
Msa1445250 MtrunA17_Chr4g0008591 42.908 282 124 4 90 363 196 448 2.89e-63 218
Msa1445250 MtrunA17_Chr7g0240371 41.137 299 133 6 75 358 122 392 2.09e-61 211
Msa1445250 MtrunA17_Chr2g0327021 37.910 335 176 8 72 382 227 553 9.31e-61 212
Msa1445250 MtrunA17_Chr1g0151681 36.667 330 169 9 53 354 186 503 4.21e-53 189
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1445250 AT2G35940.3 47.368 589 234 20 38 584 126 680 3.93e-128 391
Msa1445250 AT2G35940.1 47.368 589 234 20 38 584 126 680 3.93e-128 391
Msa1445250 AT2G35940.2 47.368 589 234 20 38 584 126 680 3.93e-128 391
Msa1445250 AT2G16400.1 52.096 334 134 7 66 396 89 399 4.21e-99 310
Msa1445250 AT4G34610.2 50.568 352 143 10 49 390 94 424 1.15e-97 308
Msa1445250 AT4G34610.4 50.568 352 143 10 49 390 94 424 1.15e-97 308
Msa1445250 AT4G34610.3 50.568 352 143 10 49 390 94 424 1.15e-97 308
Msa1445250 AT4G34610.1 50.568 352 143 10 49 390 94 424 1.15e-97 308
Msa1445250 AT1G75410.1 52.703 296 99 8 79 356 160 432 1.05e-89 287
Msa1445250 AT1G75410.2 52.703 296 99 8 79 356 160 432 1.05e-89 287
Msa1445250 AT1G19700.1 53.069 277 99 6 91 351 166 427 1.44e-88 284
Msa1445250 AT1G19700.3 53.069 277 99 6 91 351 166 427 1.44e-88 284
Msa1445250 AT1G19700.5 53.069 277 99 6 91 351 166 427 1.44e-88 284
Msa1445250 AT1G19700.4 53.069 277 99 6 91 351 166 427 1.44e-88 284
Msa1445250 AT1G19700.2 53.069 277 99 6 91 351 166 427 1.44e-88 284
Msa1445250 AT2G27220.1 46.648 358 144 9 20 375 12 324 1.15e-87 278
Msa1445250 AT2G27220.3 46.648 358 144 9 20 375 12 324 1.15e-87 278
Msa1445250 AT2G27220.2 44.415 376 144 10 20 375 12 342 1.25e-83 268
Msa1445250 AT2G23760.2 52.809 267 112 3 82 342 233 491 3.12e-82 270
Msa1445250 AT2G23760.1 52.809 267 112 3 82 342 233 491 3.12e-82 270
Msa1445250 AT2G23760.3 52.809 267 112 3 82 342 233 491 3.12e-82 270
Msa1445250 AT2G23760.4 44.201 319 112 4 82 342 233 543 2.51e-72 245
Msa1445250 AT1G75410.3 50.973 257 90 7 79 322 160 393 9.32e-72 236
Msa1445250 AT5G41410.1 46.014 276 130 3 91 350 194 466 6.62e-70 237
Msa1445250 AT4G36870.4 47.500 240 115 3 90 323 312 546 2.38e-64 221
Msa1445250 AT4G36870.3 47.059 238 115 3 90 321 312 544 4.87e-63 217
Msa1445250 AT1G75430.1 40.484 289 146 8 84 355 10 289 1.08e-61 206
Msa1445250 AT5G02030.1 41.137 299 123 4 71 346 151 419 3.64e-61 213
Msa1445250 AT4G32980.1 37.072 321 170 7 51 358 154 455 1.48e-52 187
Msa1445250 AT4G32980.2 37.072 321 170 7 51 358 154 455 1.48e-52 187
Msa1445250 AT2G27990.1 38.562 306 152 8 48 347 221 496 5.45e-51 185
Msa1445250 AT1G75430.2 35.526 228 128 7 84 301 10 228 1.50e-32 127
Msa1445250 AT2G27990.2 31.154 260 143 8 48 301 221 450 4.10e-24 105

Find 228 sgRNAs with CRISPR-Local

Find 389 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTCTTTAACGTGTAATT+TGG 0.155568 tig0030985:-15312 Msa1445250:intergenic
AGAAAGATTAATGGAACTTT+TGG 0.216027 tig0030985:-14815 Msa1445250:intergenic
GCATGAATGTAATTTGTATT+TGG 0.245393 tig0030985:+20852 Msa1445250:three_prime_UTR
TGATGTTGACATTGAATTAT+TGG 0.252974 tig0030985:-20022 Msa1445250:intergenic
CAAAATCACATATAATTTCT+AGG 0.265756 tig0030985:-20586 Msa1445250:intergenic
ATTCCACCTTCCAACTTTCA+TGG 0.270274 tig0030985:+15631 Msa1445250:five_prime_UTR
CTCTCTCAGAATTTACATTT+AGG 0.274546 tig0030985:+20420 Msa1445250:CDS
GGGTCCTTTCAATCCAATTC+TGG 0.288442 tig0030985:+20063 Msa1445250:CDS
CTGCTTTGAGATTGTCTTCA+AGG 0.297342 tig0030985:-17965 Msa1445250:intergenic
AATTCTGGTTTCCATCTTGC+AGG 0.297418 tig0030985:+20078 Msa1445250:CDS
GTGTTAAGTTAGAAGGTTCT+AGG 0.298713 tig0030985:+18064 Msa1445250:CDS
TCTTGCAAGCATAACCTTAT+CGG 0.300640 tig0030985:-19006 Msa1445250:intergenic
ACAAATAGATCAAAAGAATT+AGG 0.307786 tig0030985:+19910 Msa1445250:CDS
TCACTGTTGGAGAAAGGTTT+TGG 0.308937 tig0030985:-19990 Msa1445250:intergenic
AGGAGGGACGATTGATGAAA+TGG 0.313418 tig0030985:+20440 Msa1445250:CDS
TTTGAGCAAGCAACAGGATA+TGG 0.320173 tig0030985:+17916 Msa1445250:CDS
TGCTTGGGTGTTAAGTTAGA+AGG 0.330959 tig0030985:+18057 Msa1445250:CDS
TCAGAGTAAGGTACGTAGTT+TGG 0.340254 tig0030985:-15464 Msa1445250:intergenic
GGTTCTCCCCACGCGCTTCA+TGG 0.344045 tig0030985:+15551 Msa1445250:five_prime_UTR
CTTCGCAGCAAACGCCTTAC+CGG 0.347714 tig0030985:+15917 Msa1445250:CDS
TTGCTAGCTCTATTATGATT+GGG 0.355291 tig0030985:-14772 Msa1445250:intergenic
AGGAGGGGAAGAAAGATTAA+TGG 0.357424 tig0030985:-14824 Msa1445250:intergenic
ATTGCTAGCTCTATTATGAT+TGG 0.358539 tig0030985:-14773 Msa1445250:intergenic
TCAAGGTAGTTTCCTTTCAA+TGG 0.367613 tig0030985:+20137 Msa1445250:CDS
GAGTTTCGCCCGCAGCAAAT+TGG 0.368022 tig0030985:+15850 Msa1445250:CDS
GACAAACCACGCTGATAAAC+TGG 0.368350 tig0030985:-15883 Msa1445250:intergenic
AATCATCATGGTGGTGGTTA+TGG 0.369811 tig0030985:+20258 Msa1445250:CDS
TACATACTTTAATATGGTAT+TGG 0.369864 tig0030985:+20743 Msa1445250:three_prime_UTR
GTTATGCTTGCAAGACAAAC+TGG 0.371730 tig0030985:+19014 Msa1445250:CDS
TGATCTATTTGTGTTATCCT+TGG 0.372128 tig0030985:-19899 Msa1445250:intergenic
AGAACAGAAACAGCTCTTTC+AGG 0.372428 tig0030985:-18180 Msa1445250:intergenic
GGAGGGACGATTGATGAAAT+GGG 0.373488 tig0030985:+20441 Msa1445250:CDS
CACTATAACATGTGGGGATC+AGG 0.378783 tig0030985:+15742 Msa1445250:exon
AGAATTAATTCTGACAGATA+TGG 0.379407 tig0030985:+15355 Msa1445250:five_prime_UTR
CAAGACAAACTGGACTTACT+AGG 0.381649 tig0030985:+19024 Msa1445250:CDS
TCTCAATGGAAGATGTTAGA+AGG 0.381842 tig0030985:+20286 Msa1445250:CDS
ATATCACACTTTGCATTTGA+TGG 0.388198 tig0030985:-17888 Msa1445250:intergenic
CTGTTTCTGTTCTTCGTGCT+TGG 0.388531 tig0030985:+18190 Msa1445250:CDS
CAAGTTGAGTTGGATTAAGT+TGG 0.389678 tig0030985:+20712 Msa1445250:three_prime_UTR
TTTCATTTCCACTCAATAAA+GGG 0.390624 tig0030985:-20236 Msa1445250:intergenic
GAAATCCAACCGTCGGTAGA+AGG 0.392044 tig0030985:+15416 Msa1445250:five_prime_UTR
TTATATAATAAGCGTCTGTT+TGG 0.393613 tig0030985:-20679 Msa1445250:intergenic
ACGGTAGCCGAGGAGGAAAA+TGG 0.396762 tig0030985:-15706 Msa1445250:intergenic
GTCTACTAATTAATTGCAAA+TGG 0.398084 tig0030985:+14879 Msa1445250:five_prime_UTR
ATTATTCTCCTCTTGCTCCT+TGG 0.402178 tig0030985:-19872 Msa1445250:intergenic
GTTGCTGTGACAGCGTTATC+AGG 0.403199 tig0030985:-15775 Msa1445250:intergenic
TAAGACAGCTAGCAAGACTT+TGG 0.403443 tig0030985:+18023 Msa1445250:CDS
ACGCCTTACCGGTCGGCCTC+TGG 0.404712 tig0030985:+15928 Msa1445250:CDS
CATAACCTTATCGGAGTCCT+TGG 0.408384 tig0030985:-18997 Msa1445250:intergenic
CTGATCCCCACATGTTATAG+TGG 0.410131 tig0030985:-15741 Msa1445250:intergenic
AAAGTGATGTGTATGGGATT+TGG 0.412182 tig0030985:+20950 Msa1445250:three_prime_UTR
TGCAAGATGGAAACCAGAAT+TGG 0.412205 tig0030985:-20076 Msa1445250:intergenic
AAGGTATACATACTTTAATA+TGG 0.412519 tig0030985:+20737 Msa1445250:three_prime_UTR
GATATGGCAACGTACTTTCA+TGG 0.416361 tig0030985:+15371 Msa1445250:five_prime_UTR
AACGCTACCACTAACAATAA+TGG 0.417083 tig0030985:+15530 Msa1445250:five_prime_UTR
GCTGCAGTGCCCGCTGTTGT+CGG 0.418316 tig0030985:-18110 Msa1445250:intergenic
ATTTGCTGCGGGCGAAACTC+TGG 0.420271 tig0030985:-15847 Msa1445250:intergenic
AGTTAGAAGGTTCTAGGCTT+CGG 0.429264 tig0030985:+18070 Msa1445250:CDS
TTGAAAGGAAACTACCTTGA+TGG 0.429916 tig0030985:-20134 Msa1445250:intergenic
AACACTACTCCTTCTCATTC+AGG 0.436567 tig0030985:+20492 Msa1445250:CDS
AATGGTGTTTCTCTAACTCT+TGG 0.436577 tig0030985:+20348 Msa1445250:CDS
TTGATATTGAAAACAGAAAG+AGG 0.441083 tig0030985:+20532 Msa1445250:CDS
AAGCTTGTTAATTTGAAGCT+TGG 0.443810 tig0030985:-15231 Msa1445250:intergenic
TGGTGAGATTGAGGTATCTC+CGG 0.447805 tig0030985:+15948 Msa1445250:CDS
GGGAGAACCATTATTGTTAG+TGG 0.451641 tig0030985:-15537 Msa1445250:intergenic
TCATCATTTGAGCAAGCAAC+AGG 0.451763 tig0030985:+17910 Msa1445250:CDS
CTCAATCAACACCACTTGCT+TGG 0.452628 tig0030985:+15601 Msa1445250:five_prime_UTR
TTGAGATTGTCTTCAAGGCT+AGG 0.454466 tig0030985:-17960 Msa1445250:intergenic
GCTCCTAGGTTCCATGGAAA+TGG 0.455886 tig0030985:+20330 Msa1445250:CDS
TTGAAGTTTCAACAAAATCC+TGG 0.456383 tig0030985:+20623 Msa1445250:three_prime_UTR
TTGAAATCACTGTTGGAGAA+AGG 0.457475 tig0030985:-19996 Msa1445250:intergenic
AAGACAGCTAGCAAGACTTT+GGG 0.459364 tig0030985:+18024 Msa1445250:CDS
GATGTGGTGGAAATCATTAA+AGG 0.459536 tig0030985:+20885 Msa1445250:three_prime_UTR
TTGGGTGAAGATGATTGCTT+GGG 0.462431 tig0030985:+18042 Msa1445250:CDS
TTGGAACTTGAAATCACTGT+TGG 0.463404 tig0030985:-20003 Msa1445250:intergenic
CAGCGGGCACTGCAGCAACT+TGG 0.465763 tig0030985:+18117 Msa1445250:CDS
TTAACGTGTAATTTGGATTG+TGG 0.467877 tig0030985:-15305 Msa1445250:intergenic
TTAGTGAGCAATTAGCTCCT+AGG 0.468409 tig0030985:+20316 Msa1445250:CDS
GTACGTAGTTTGGATTCATA+AGG 0.468791 tig0030985:-15454 Msa1445250:intergenic
TGAAGTTGTGAATGTGGATA+AGG 0.475584 tig0030985:+16065 Msa1445250:CDS
TCTCAGAATTTACATTTAGG+AGG 0.475857 tig0030985:+20423 Msa1445250:CDS
TTATAAGACTCAAGTTGAGT+TGG 0.479257 tig0030985:+20702 Msa1445250:three_prime_UTR
GGTAGCCGTGGAGGCGAGGA+AGG 0.483983 tig0030985:+15970 Msa1445250:CDS
GAGTTGGATTAAGTTGGAAA+AGG 0.490139 tig0030985:+20718 Msa1445250:three_prime_UTR
CCACCAACTCCGACAACAGC+GGG 0.492092 tig0030985:+18101 Msa1445250:CDS
CTGAGAGAGAAATCCATGTT+GGG 0.492621 tig0030985:-20406 Msa1445250:intergenic
GTGCCCGCTGTTGTCGGAGT+TGG 0.494381 tig0030985:-18104 Msa1445250:intergenic
GAATGATTCATAGCAATGCT+TGG 0.495045 tig0030985:+18139 Msa1445250:CDS
AACTGGACTTACTAGGAGTC+AGG 0.495725 tig0030985:+19031 Msa1445250:CDS
CAATTAGCTCCTAGGTTCCA+TGG 0.502313 tig0030985:+20324 Msa1445250:CDS
TCACCAGAGGCCGACCGGTA+AGG 0.503130 tig0030985:-15931 Msa1445250:intergenic
AAGTACATTTCTTCAACCAT+TGG 0.504400 tig0030985:-19841 Msa1445250:intergenic
CTTTCTTCCCCTCCTCGTGC+GGG 0.504475 tig0030985:+14832 Msa1445250:five_prime_UTR
AATGAATACCCTTTATTGAG+TGG 0.507581 tig0030985:+20228 Msa1445250:CDS
TGAGATTGTCTTCAAGGCTA+GGG 0.509850 tig0030985:-17959 Msa1445250:intergenic
GAAGTTGTGAATGTGGATAA+GGG 0.514101 tig0030985:+16066 Msa1445250:CDS
TGGTTTCCACAAGCGAACTC+TGG 0.515046 tig0030985:-19821 Msa1445250:intergenic
TAGTTTCCTTTCAATGGACA+TGG 0.518524 tig0030985:+20143 Msa1445250:CDS
TCTTTCTTCCCCTCCTCGTG+CGG 0.519485 tig0030985:+14831 Msa1445250:five_prime_UTR
TTCCACACGCAAAATTCACT+TGG 0.521622 tig0030985:+14723 Msa1445250:five_prime_UTR
GACGAAATCATGTTGCCACC+AGG 0.522786 tig0030985:-20641 Msa1445250:intergenic
CCACAGAGTTTGAAGTTGAA+AGG 0.523168 tig0030985:+20190 Msa1445250:CDS
TCAATTCCATGTCCATTGAA+AGG 0.523266 tig0030985:-20149 Msa1445250:intergenic
CTCAGAATTTACATTTAGGA+GGG 0.524512 tig0030985:+20424 Msa1445250:CDS
TGCTAGCTCTATTATGATTG+GGG 0.525049 tig0030985:-14771 Msa1445250:intergenic
TTCAATGTCAACATCACCAA+TGG 0.525243 tig0030985:+20029 Msa1445250:CDS
CCTCTCTCTTCAACCCAACA+TGG 0.526082 tig0030985:+20393 Msa1445250:CDS
TGTAGGAGTGTCGGTAGTGT+TGG 0.526282 tig0030985:-15656 Msa1445250:intergenic
GAAACCAGAATTGGATTGAA+AGG 0.527024 tig0030985:-20067 Msa1445250:intergenic
CCCGCTGTTGTCGGAGTTGG+TGG 0.528625 tig0030985:-18101 Msa1445250:intergenic
GGAAAATTAACCAGGTATGT+AGG 0.528627 tig0030985:+20764 Msa1445250:three_prime_UTR
GGTGAGATTGAGGTATCTCC+GGG 0.529905 tig0030985:+15949 Msa1445250:CDS
TTATTGTTAGTGGTAGCGTT+GGG 0.532546 tig0030985:-15527 Msa1445250:intergenic
TCCGGGTAGCCGTGGAGGCG+AGG 0.533224 tig0030985:+15966 Msa1445250:CDS
TTTGGGTGAAGATGATTGCT+TGG 0.533846 tig0030985:+18041 Msa1445250:CDS
GACCCTCCTTCTCCTCCCAT+TGG 0.534808 tig0030985:-20045 Msa1445250:intergenic
AGTGTTGGATCCATGAAAGT+TGG 0.535269 tig0030985:-15641 Msa1445250:intergenic
AGATATGAAAGTGATGTGTA+TGG 0.535817 tig0030985:+20943 Msa1445250:three_prime_UTR
TCTGAGAGAGAAATCCATGT+TGG 0.535848 tig0030985:-20407 Msa1445250:intergenic
GAAACTTCATATGGTTGTGT+AGG 0.538056 tig0030985:-15673 Msa1445250:intergenic
TAAACGCCAGAGTTCGCTTG+TGG 0.538237 tig0030985:+19815 Msa1445250:CDS
TGCAATTAATTAGTAGACAA+AGG 0.538398 tig0030985:-14874 Msa1445250:intergenic
AATGGTTGAAGAAATGTACT+TGG 0.541831 tig0030985:+19843 Msa1445250:CDS
TGAAAGGAAACTACCTTGAT+GGG 0.542083 tig0030985:-20133 Msa1445250:intergenic
GTCGGCCTCTGGTGAGATTG+AGG 0.544425 tig0030985:+15939 Msa1445250:CDS
TTATCCCAAGGACTCCGATA+AGG 0.544643 tig0030985:+18992 Msa1445250:CDS
CATCAGATGATCCTGCAAGA+TGG 0.545078 tig0030985:-20089 Msa1445250:intergenic
CGTGGAGGCGAGGAAGGTGG+TGG 0.547728 tig0030985:+15976 Msa1445250:CDS
ATAACCTTATCGGAGTCCTT+GGG 0.549058 tig0030985:-18996 Msa1445250:intergenic
ATGAGAAGGAGTAGTGTTGA+TGG 0.552006 tig0030985:-20487 Msa1445250:intergenic
TTCAACTTCAAACTCTGTGG+TGG 0.552624 tig0030985:-20187 Msa1445250:intergenic
CAATCTCACCAGAGGCCGAC+CGG 0.552708 tig0030985:-15936 Msa1445250:intergenic
TCCTCGCCTCCACGGCTACC+CGG 0.553350 tig0030985:-15967 Msa1445250:intergenic
ATTATTGTTAGTGGTAGCGT+TGG 0.555283 tig0030985:-15528 Msa1445250:intergenic
ACATCACCAATGGGAGGAGA+AGG 0.558319 tig0030985:+20039 Msa1445250:CDS
TTAGAGAAACACCATTTCCA+TGG 0.559032 tig0030985:-20341 Msa1445250:intergenic
TCAATGTCAACATCACCAAT+GGG 0.559905 tig0030985:+20030 Msa1445250:CDS
GTAAACCTTCTACCGACGGT+TGG 0.560766 tig0030985:-15421 Msa1445250:intergenic
TATGAAAACCAATTTGCTGC+GGG 0.560781 tig0030985:-15858 Msa1445250:intergenic
TAATTTGTTCCTGAATGAGA+AGG 0.560909 tig0030985:-20501 Msa1445250:intergenic
CTCGTCCCCACTATAACATG+TGG 0.566142 tig0030985:+15734 Msa1445250:exon
AGCCGTGGAGGCGAGGAAGG+TGG 0.567527 tig0030985:+15973 Msa1445250:CDS
GGAAGAAACCAAGGAGCAAG+AGG 0.569522 tig0030985:+19864 Msa1445250:CDS
ATGGAATTCCCGCACGAGGA+GGG 0.570104 tig0030985:-14840 Msa1445250:intergenic
TCACCAATGGGAGGAGAAGG+AGG 0.571505 tig0030985:+20042 Msa1445250:CDS
GAACAATGTAGGTAGAGCTA+AGG 0.571744 tig0030985:+17851 Msa1445250:intron
AATACAAATTACATTCATGC+AGG 0.573041 tig0030985:-20849 Msa1445250:intergenic
ACGAGGAGTCACGGTAGCCG+AGG 0.573764 tig0030985:-15716 Msa1445250:intergenic
TGATCCCCACATGTTATAGT+GGG 0.573944 tig0030985:-15740 Msa1445250:intergenic
TGGTTATGGATCATTCTCAA+TGG 0.575128 tig0030985:+20272 Msa1445250:CDS
AGTTCGCTTGTGGAAACCAA+TGG 0.575659 tig0030985:+19825 Msa1445250:CDS
ATGCATGCAGCAGTAGGGTA+TGG 0.576937 tig0030985:-20995 Msa1445250:intergenic
GACAAAGGCAGCTACAAGGA+TGG 0.577961 tig0030985:-14859 Msa1445250:intergenic
TGGAATTCCCGCACGAGGAG+GGG 0.581086 tig0030985:-14839 Msa1445250:intergenic
GTAATAACAACAAAGAGAAG+AGG 0.583452 tig0030985:+16124 Msa1445250:CDS
AATATTGAATCTAGTTCAAG+TGG 0.585962 tig0030985:+16153 Msa1445250:CDS
TGATTCATAGCAATGCTTGG+AGG 0.588232 tig0030985:+18142 Msa1445250:CDS
TGGTGTTGATTGAGTGATGA+AGG 0.588479 tig0030985:-15592 Msa1445250:intergenic
GTGGATAAGGGAATCATCAA+AGG 0.589254 tig0030985:+16078 Msa1445250:CDS
CACCACCTTCCTCGCCTCCA+CGG 0.590288 tig0030985:-15975 Msa1445250:intergenic
TCATTCAACTCCTACATACC+TGG 0.591092 tig0030985:-20774 Msa1445250:intergenic
CACATGTTATAGTGGGGACG+AGG 0.591269 tig0030985:-15733 Msa1445250:intergenic
TTTGCATGCATGCAGCAGTA+GGG 0.591778 tig0030985:-21000 Msa1445250:intergenic
AGTAGACAAAGGCAGCTACA+AGG 0.593196 tig0030985:-14863 Msa1445250:intergenic
AGAGGAGAATAATGACTCCA+AGG 0.594942 tig0030985:+19882 Msa1445250:CDS
AATCATCAAAGGAGAATCTG+TGG 0.597233 tig0030985:+16089 Msa1445250:CDS
CGAGGAGGAAAATGGATGGA+AGG 0.598355 tig0030985:-15698 Msa1445250:intergenic
TCACACTTTGCATTTGATGG+TGG 0.598415 tig0030985:-17885 Msa1445250:intergenic
TGGAAGGTGGAAACTTCATA+TGG 0.602748 tig0030985:-15682 Msa1445250:intergenic
CTTGAATCCATGAAGCGCGT+GGG 0.602989 tig0030985:-15558 Msa1445250:intergenic
ATATGGTTGTGTAGGAGTGT+CGG 0.603447 tig0030985:-15665 Msa1445250:intergenic
GAGGTATCTCCGGGTAGCCG+TGG 0.603840 tig0030985:+15958 Msa1445250:CDS
ACACCATTTCCATGGAACCT+AGG 0.604931 tig0030985:-20333 Msa1445250:intergenic
CAGGATCATCTGATGTGCAA+AGG 0.605084 tig0030985:+20097 Msa1445250:CDS
GGTGGAGTTTCGACCATGAA+CGG 0.607341 tig0030985:+15994 Msa1445250:CDS
GTCTGTAAACCTTCTACCGA+CGG 0.607577 tig0030985:-15425 Msa1445250:intergenic
ATCAAAGGAGAATCTGTGGA+AGG 0.608300 tig0030985:+16093 Msa1445250:CDS
CCATGTTGGGTTGAAGAGAG+AGG 0.608631 tig0030985:-20393 Msa1445250:intergenic
TCGTCCCCACTATAACATGT+GGG 0.609880 tig0030985:+15735 Msa1445250:exon
ACTTGAATCCATGAAGCGCG+TGG 0.612796 tig0030985:-15559 Msa1445250:intergenic
CTTTCAGGCAAGCCTCTCTG+AGG 0.615305 tig0030985:-18165 Msa1445250:intergenic
GATTTCGTCAAACTCAGCGT+TGG 0.617385 tig0030985:+20655 Msa1445250:three_prime_UTR
ATGGTATTGGAAAATTAACC+AGG 0.618579 tig0030985:+20756 Msa1445250:three_prime_UTR
GGTGGAAGAGAAAACAATGG+AGG 0.618595 tig0030985:+16174 Msa1445250:CDS
CTATGAAAACCAATTTGCTG+CGG 0.619359 tig0030985:-15859 Msa1445250:intergenic
TCTTGATGAAGTTGTGAATG+TGG 0.620303 tig0030985:+16059 Msa1445250:CDS
ATTGAATCTAGTTCAAGTGG+TGG 0.621430 tig0030985:+16156 Msa1445250:CDS
TAGCTCTATTATGATTGGGG+TGG 0.621491 tig0030985:-14768 Msa1445250:intergenic
GGAGGAAAATGGATGGAAGG+TGG 0.623156 tig0030985:-15695 Msa1445250:intergenic
TTGAATCCATGAAGCGCGTG+GGG 0.624444 tig0030985:-15557 Msa1445250:intergenic
AATGAAAATCATCATGGTGG+TGG 0.625687 tig0030985:+20252 Msa1445250:CDS
TGGTTAGTACGTAGATGTGG+TGG 0.626648 tig0030985:+20872 Msa1445250:three_prime_UTR
AATGTACTTGGAAGAAACCA+AGG 0.627170 tig0030985:+19855 Msa1445250:CDS
AGTGGAAATGAAAATCATCA+TGG 0.627811 tig0030985:+20246 Msa1445250:CDS
AGGAGTCACGGTAGCCGAGG+AGG 0.628325 tig0030985:-15713 Msa1445250:intergenic
GATCCATGAAAGTTGGAAGG+TGG 0.629051 tig0030985:-15634 Msa1445250:intergenic
ATTTGGTTAGTACGTAGATG+TGG 0.629992 tig0030985:+20869 Msa1445250:three_prime_UTR
GATATGAAAGTGATGTGTAT+GGG 0.630522 tig0030985:+20944 Msa1445250:three_prime_UTR
TAGCCGAGGAGGAAAATGGA+TGG 0.630526 tig0030985:-15702 Msa1445250:intergenic
GCTTGTTAGCATGCTAGATG+AGG 0.632117 tig0030985:+16257 Msa1445250:CDS
GTATCTCCGGGTAGCCGTGG+AGG 0.632306 tig0030985:+15961 Msa1445250:CDS
GTGGAAGAGAAAACAATGGA+GGG 0.633833 tig0030985:+16175 Msa1445250:CDS
ATAGTGGGGACGAGGAGTCA+CGG 0.640127 tig0030985:-15725 Msa1445250:intergenic
CATAGACCAGTTTATCAGCG+TGG 0.640750 tig0030985:+15877 Msa1445250:CDS
TGTGACCTGCAGTTATCCCA+AGG 0.642673 tig0030985:+18980 Msa1445250:intron
CACCAATGGGAGGAGAAGGA+GGG 0.642966 tig0030985:+20043 Msa1445250:CDS
CCTTTCAACTTCAAACTCTG+TGG 0.643049 tig0030985:-20190 Msa1445250:intergenic
GAATAGTAACTCCAAGCAAG+TGG 0.643953 tig0030985:-15612 Msa1445250:intergenic
AAAGGAGAATCTGTGGAAGG+AGG 0.648166 tig0030985:+16096 Msa1445250:CDS
CGTCCCCACTATAACATGTG+GGG 0.666378 tig0030985:+15736 Msa1445250:exon
AAGTTTCAACAAAATCCTGG+TGG 0.668888 tig0030985:+20626 Msa1445250:three_prime_UTR
GCAGCAAACGCCTTACCGGT+CGG 0.670260 tig0030985:+15921 Msa1445250:CDS
GATTGAGTGATGAAGGCGCG+TGG 0.674684 tig0030985:-15585 Msa1445250:intergenic
CAGTTCTGAAATCCAACCGT+CGG 0.674796 tig0030985:+15409 Msa1445250:five_prime_UTR
ACCACCAACTCCGACAACAG+CGG 0.680001 tig0030985:+18100 Msa1445250:CDS
AAGGATGGAATTCCCGCACG+AGG 0.681112 tig0030985:-14844 Msa1445250:intergenic
GATGGAATTCCCGCACGAGG+AGG 0.681883 tig0030985:-14841 Msa1445250:intergenic
TTGGATCCATGAAAGTTGGA+AGG 0.681916 tig0030985:-15637 Msa1445250:intergenic
ATTGAGTGATGAAGGCGCGT+GGG 0.683811 tig0030985:-15584 Msa1445250:intergenic
AGATACCTCAATCTCACCAG+AGG 0.686383 tig0030985:-15944 Msa1445250:intergenic
ATGTCAACATCACCAATGGG+AGG 0.690189 tig0030985:+20033 Msa1445250:CDS
ATGAAAACAAAATCACATGG+TGG 0.692742 tig0030985:+15199 Msa1445250:five_prime_UTR
AAAATGAAAACAAAATCACA+TGG 0.701682 tig0030985:+15196 Msa1445250:five_prime_UTR
AGTGGTGGAAGAGAAAACAA+TGG 0.709372 tig0030985:+16171 Msa1445250:CDS
GATCCCCACATGTTATAGTG+GGG 0.711349 tig0030985:-15739 Msa1445250:intergenic
AAACTACGTACCTTACTCTG+AGG 0.712519 tig0030985:+15466 Msa1445250:five_prime_UTR
AATGCTTGGAGGCCTCAGAG+AGG 0.737120 tig0030985:+18153 Msa1445250:CDS
GGAAATGAAAATCATCATGG+TGG 0.766816 tig0030985:+20249 Msa1445250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTAATTTTCTTTTTAG+GGG - tig0030985:18463-18482 Msa1445250:intergenic 10.0%
!!! CATTATTAATTTTCTTTTTA+GGG - tig0030985:18464-18483 Msa1445250:intergenic 10.0%
!!! TCATTATTAATTTTCTTTTT+AGG - tig0030985:18465-18484 Msa1445250:intergenic 10.0%
!!! ATTTTTATAAAAGTATTTTG+TGG - tig0030985:19452-19471 Msa1445250:intergenic 10.0%
!! TACCCATAAATAAATTTAAT+TGG + tig0030985:17246-17265 Msa1445250:intron 15.0%
!! AGCCAATTAAATTTATTTAT+GGG - tig0030985:17251-17270 Msa1445250:intergenic 15.0%
!! TAGCCAATTAAATTTATTTA+TGG - tig0030985:17252-17271 Msa1445250:intergenic 15.0%
!!! TATTTTCAAGAAATAGTTAT+TGG + tig0030985:17412-17431 Msa1445250:intron 15.0%
!!! AGTTAAATTAACCATAATTT+TGG + tig0030985:18655-18674 Msa1445250:intron 15.0%
!! TATATCAAAATTTGTAAGTA+AGG - tig0030985:18920-18939 Msa1445250:intergenic 15.0%
!! ATATAGAAAAATTAAGTACT+TGG + tig0030985:18935-18954 Msa1445250:intron 15.0%
!! TATTAACAATCAGATTAAAT+CGG - tig0030985:19126-19145 Msa1445250:intergenic 15.0%
!! TATAAAGATGTACAAAAATT+TGG + tig0030985:20908-20927 Msa1445250:three_prime_UTR 15.0%
!! GAAAAAGTGAAAATAAAAAC+TGG + tig0030985:14914-14933 Msa1445250:five_prime_UTR 20.0%
!!! TGTTTGAAACAATTATTAAC+CGG + tig0030985:15051-15070 Msa1445250:intron 20.0%
!! TATTAATCATCTGATTCTTA+GGG - tig0030985:15117-15136 Msa1445250:intergenic 20.0%
!! ATATTAATCATCTGATTCTT+AGG - tig0030985:15118-15137 Msa1445250:intergenic 20.0%
!!! TTGTTTTCATTTTCATTACT+TGG - tig0030985:15189-15208 Msa1445250:intergenic 20.0%
!! AAAATGAAAACAAAATCACA+TGG + tig0030985:15196-15215 Msa1445250:five_prime_UTR 20.0%
!!! AAAAAAGAAAACCTTCTTTT+TGG - tig0030985:15278-15297 Msa1445250:intergenic 20.0%
!! AAATTCTTTAACGTGTAATT+TGG - tig0030985:15315-15334 Msa1445250:intergenic 20.0%
!!! AATTAACTTTCCACAAATTT+TGG + tig0030985:16302-16321 Msa1445250:intron 20.0%
!!! ATTAACTTTCCACAAATTTT+GGG + tig0030985:16303-16322 Msa1445250:intron 20.0%
!! AAAATATTTGTGTGAAAGTA+CGG + tig0030985:16377-16396 Msa1445250:intron 20.0%
!!! GTCTTTAAAAACAAAAATTG+AGG + tig0030985:16533-16552 Msa1445250:intron 20.0%
!! TTTGTTGAAAATATATGTTG+AGG + tig0030985:16665-16684 Msa1445250:intron 20.0%
!! TATGGTAACATATTAACATA+AGG + tig0030985:17124-17143 Msa1445250:intron 20.0%
!! ATGGTAACATATTAACATAA+GGG + tig0030985:17125-17144 Msa1445250:intron 20.0%
!! TATTCATGCAAATCTAAATT+AGG - tig0030985:17454-17473 Msa1445250:intergenic 20.0%
!! TGGAGTAATTTAAATACTTA+CGG - tig0030985:18237-18256 Msa1445250:intergenic 20.0%
!!! TATTGATTTGTGCAAAATTA+TGG + tig0030985:18573-18592 Msa1445250:intron 20.0%
!! TTAATTCACAACCAAAATTA+TGG - tig0030985:18669-18688 Msa1445250:intergenic 20.0%
!!! ATTTTTTAACGTGATAATTG+AGG + tig0030985:18719-18738 Msa1445250:intron 20.0%
!!! TTAAAAGTACAGAAATAGAT+TGG - tig0030985:19063-19082 Msa1445250:intergenic 20.0%
!!! AATCTATTTCTGTACTTTTA+AGG + tig0030985:19062-19081 Msa1445250:intron 20.0%
!! CATCTTTGTATTATTGTAAT+GGG - tig0030985:19211-19230 Msa1445250:intergenic 20.0%
!! TTTGACAACAATAATTCTAA+AGG + tig0030985:19650-19669 Msa1445250:intron 20.0%
!! ACAAATAGATCAAAAGAATT+AGG + tig0030985:19910-19929 Msa1445250:CDS 20.0%
!!! ATTAATTTGATCAAGTTTTG+TGG - tig0030985:19938-19957 Msa1445250:intergenic 20.0%
!! CAAAATCACATATAATTTCT+AGG - tig0030985:20589-20608 Msa1445250:intergenic 20.0%
!! AAGGTATACATACTTTAATA+TGG + tig0030985:20737-20756 Msa1445250:three_prime_UTR 20.0%
!! TACATACTTTAATATGGTAT+TGG + tig0030985:20743-20762 Msa1445250:three_prime_UTR 20.0%
!! AGAAAGATTAATGGAACTTT+TGG - tig0030985:14818-14837 Msa1445250:intergenic 25.0%
! TGCAATTAATTAGTAGACAA+AGG - tig0030985:14877-14896 Msa1445250:intergenic 25.0%
! GTCTACTAATTAATTGCAAA+TGG + tig0030985:14879-14898 Msa1445250:five_prime_UTR 25.0%
! GGTTAATAATTGTTTCAAAC+AGG - tig0030985:15052-15071 Msa1445250:intergenic 25.0%
! ATTAATCATCTGATTCTTAG+GGG - tig0030985:15116-15135 Msa1445250:intergenic 25.0%
!!! TTTATTTTGCCATGATTTTC+AGG + tig0030985:15149-15168 Msa1445250:intron 25.0%
!! TTTTCATTTTCATTACTTGG+TGG - tig0030985:15186-15205 Msa1445250:intergenic 25.0%
! AGAATTAATTCTGACAGATA+TGG + tig0030985:15355-15374 Msa1445250:five_prime_UTR 25.0%
!! AATATTGAATCTAGTTCAAG+TGG + tig0030985:16153-16172 Msa1445250:CDS 25.0%
! CGGTACATATTTATTAATTG+TGG + tig0030985:16397-16416 Msa1445250:intron 25.0%
! TGAAAATATATGTTGAGGAA+AGG + tig0030985:16670-16689 Msa1445250:intron 25.0%
! GAAAATATATGTTGAGGAAA+GGG + tig0030985:16671-16690 Msa1445250:intron 25.0%
! AATGTCAGAGAGAATAATTT+GGG + tig0030985:16729-16748 Msa1445250:intron 25.0%
! ACTCACATAAGAAAGAAATT+TGG - tig0030985:16912-16931 Msa1445250:intergenic 25.0%
! TAAGCACATATGACATATTA+AGG + tig0030985:16969-16988 Msa1445250:intron 25.0%
! AAGCACATATGACATATTAA+GGG + tig0030985:16970-16989 Msa1445250:intron 25.0%
! ATATGACATATTAAGGGAAA+TGG + tig0030985:16976-16995 Msa1445250:intron 25.0%
! AGTAATAGTTTCATTGTAGA+AGG + tig0030985:17579-17598 Msa1445250:intron 25.0%
! GGAGTAATTTAAATACTTAC+GGG - tig0030985:18236-18255 Msa1445250:intergenic 25.0%
! ATAACTCTAGACTTATAGAA+TGG - tig0030985:18257-18276 Msa1445250:intergenic 25.0%
!! TTATGAATCAAAAGCTTGTT+TGG - tig0030985:18322-18341 Msa1445250:intergenic 25.0%
! TAATAATGACACGTTCTTAA+TGG + tig0030985:18476-18495 Msa1445250:intron 25.0%
! TTATTAACTTACGTTGTACA+AGG + tig0030985:19175-19194 Msa1445250:intron 25.0%
! TATTAACTTACGTTGTACAA+GGG + tig0030985:19176-19195 Msa1445250:intron 25.0%
! CCATCTTTGTATTATTGTAA+TGG - tig0030985:19212-19231 Msa1445250:intergenic 25.0%
! CCATTACAATAATACAAAGA+TGG + tig0030985:19209-19228 Msa1445250:intron 25.0%
! TACAATAATACAAAGATGGT+AGG + tig0030985:19213-19232 Msa1445250:intron 25.0%
! ACAATAATACAAAGATGGTA+GGG + tig0030985:19214-19233 Msa1445250:intron 25.0%
!!! AGAATTTTGTTTCAATCGAA+AGG + tig0030985:19308-19327 Msa1445250:intron 25.0%
!!! GAATTTTGTTTCAATCGAAA+GGG + tig0030985:19309-19328 Msa1445250:intron 25.0%
! ACATATCAATTCTACAAAAG+TGG - tig0030985:19390-19409 Msa1445250:intergenic 25.0%
!! CAAAATCACAGGATTTTAAA+GGG - tig0030985:19505-19524 Msa1445250:intergenic 25.0%
!! ACAAAATCACAGGATTTTAA+AGG - tig0030985:19506-19525 Msa1445250:intergenic 25.0%
!! TAAAATCCTGTGATTTTGTA+TGG + tig0030985:19507-19526 Msa1445250:intron 25.0%
!! AAAATCCTGTGATTTTGTAT+GGG + tig0030985:19508-19527 Msa1445250:intron 25.0%
!! TACTAAGATTTTGCCTATTT+TGG + tig0030985:19552-19571 Msa1445250:intron 25.0%
!! ACTAAGATTTTGCCTATTTT+GGG + tig0030985:19553-19572 Msa1445250:intron 25.0%
!!! TCTCTTTAAGTTTTTAATGC+AGG + tig0030985:19777-19796 Msa1445250:intron 25.0%
! TGATGTTGACATTGAATTAT+TGG - tig0030985:20025-20044 Msa1445250:intergenic 25.0%
! TTTCATTTCCACTCAATAAA+GGG - tig0030985:20239-20258 Msa1445250:intergenic 25.0%
!! TTTTCATTTCCACTCAATAA+AGG - tig0030985:20240-20259 Msa1445250:intergenic 25.0%
!! AGAGGAATATTTTCATTATG+AGG - tig0030985:20378-20397 Msa1445250:intergenic 25.0%
! TTGATATTGAAAACAGAAAG+AGG + tig0030985:20532-20551 Msa1445250:CDS 25.0%
! TTATATAATAAGCGTCTGTT+TGG - tig0030985:20682-20701 Msa1445250:intergenic 25.0%
! AATACAAATTACATTCATGC+AGG - tig0030985:20852-20871 Msa1445250:intergenic 25.0%
!! GCATGAATGTAATTTGTATT+TGG + tig0030985:20852-20871 Msa1445250:three_prime_UTR 25.0%
!! TTGCTAGCTCTATTATGATT+GGG - tig0030985:14775-14794 Msa1445250:intergenic 30.0%
!! ATTGCTAGCTCTATTATGAT+TGG - tig0030985:14776-14795 Msa1445250:intergenic 30.0%
! AGATTAATGGAACTTTTGGA+GGG - tig0030985:14814-14833 Msa1445250:intergenic 30.0%
! AAGATTAATGGAACTTTTGG+AGG - tig0030985:14815-14834 Msa1445250:intergenic 30.0%
ATGAAAACAAAATCACATGG+TGG + tig0030985:15199-15218 Msa1445250:five_prime_UTR 30.0%
!! AAGCTTGTTAATTTGAAGCT+TGG - tig0030985:15234-15253 Msa1445250:intergenic 30.0%
ACACACATAAACCAAAAAGA+AGG + tig0030985:15264-15283 Msa1445250:five_prime_UTR 30.0%
TTAACGTGTAATTTGGATTG+TGG - tig0030985:15308-15327 Msa1445250:intergenic 30.0%
! CACGTTAAAGAATTTTCGTA+CGG + tig0030985:15320-15339 Msa1445250:five_prime_UTR 30.0%
! ATGTTTTGTGTTGGATTTTG+TGG - tig0030985:15494-15513 Msa1445250:intergenic 30.0%
GTAATAACAACAAAGAGAAG+AGG + tig0030985:16124-16143 Msa1445250:CDS 30.0%
TATTGAAAGCCCAAAATTTG+TGG - tig0030985:16315-16334 Msa1445250:intergenic 30.0%
GAATGTCAGAGAGAATAATT+TGG + tig0030985:16728-16747 Msa1445250:intron 30.0%
! AACATGAAACTGACTCAATT+GGG - tig0030985:16760-16779 Msa1445250:intergenic 30.0%
! AAACATGAAACTGACTCAAT+TGG - tig0030985:16761-16780 Msa1445250:intergenic 30.0%
TCTCACTCTCAATCAATAAT+GGG - tig0030985:16813-16832 Msa1445250:intergenic 30.0%
TTCTCACTCTCAATCAATAA+TGG - tig0030985:16814-16833 Msa1445250:intergenic 30.0%
ATTCATAAACACACTCATGA+TGG + tig0030985:16884-16903 Msa1445250:intron 30.0%
TTCATAAACACACTCATGAT+GGG + tig0030985:16885-16904 Msa1445250:intron 30.0%
AGATCTAACAATCTTCAAAG+TGG - tig0030985:17029-17048 Msa1445250:intergenic 30.0%
!! TTATTTTACCATGGATTTGC+CGG + tig0030985:17093-17112 Msa1445250:intron 30.0%
! ATTTTCGTGATTCATTCTTG+AGG + tig0030985:17277-17296 Msa1445250:intron 30.0%
TAGCAGTCATCTTAACATAA+TGG + tig0030985:17316-17335 Msa1445250:intron 30.0%
AAAATAACAACGTTGATCTG+AGG - tig0030985:17355-17374 Msa1445250:intergenic 30.0%
! AATTTTGTCAAACTCACTAC+AGG + tig0030985:17754-17773 Msa1445250:intron 30.0%
!!! ACTCTTGTTTTGAACAATGT+AGG + tig0030985:17840-17859 Msa1445250:intron 30.0%
ATATCACACTTTGCATTTGA+TGG - tig0030985:17891-17910 Msa1445250:intergenic 30.0%
!! TTTTCAAGAATGCCACTTAA+TGG - tig0030985:18282-18301 Msa1445250:intergenic 30.0%
TGCATGACTTGACAAATAAA+AGG + tig0030985:18500-18519 Msa1445250:intron 30.0%
CAACGTAAGTTAATAACAAG+AGG - tig0030985:19171-19190 Msa1445250:intergenic 30.0%
ATTAACTTACGTTGTACAAG+GGG + tig0030985:19177-19196 Msa1445250:intron 30.0%
CAATAATACAAAGATGGTAG+GGG + tig0030985:19215-19234 Msa1445250:intron 30.0%
AATAATACAAAGATGGTAGG+GGG + tig0030985:19216-19235 Msa1445250:intron 30.0%
AAAATCGCAATCAAAATCGA+AGG + tig0030985:19353-19372 Msa1445250:intron 30.0%
!! AGGATTTTAAAGGGTTTTGA+AGG - tig0030985:19496-19515 Msa1445250:intergenic 30.0%
TAAAACCCATACAAAATCAC+AGG - tig0030985:19516-19535 Msa1445250:intergenic 30.0%
TGAATAAAGTCTCAAAATCC+TGG + tig0030985:19605-19624 Msa1445250:intron 30.0%
! TCTCAAAATCCTGGATTTTA+GGG + tig0030985:19614-19633 Msa1445250:intron 30.0%
! CTGATTTTGTATTCTCAAAC+TGG - tig0030985:19685-19704 Msa1445250:intergenic 30.0%
! TTTTAATGCAGGTATCTAAC+TGG + tig0030985:19788-19807 Msa1445250:intron 30.0%
AAGTACATTTCTTCAACCAT+TGG - tig0030985:19844-19863 Msa1445250:intergenic 30.0%
AATGGTTGAAGAAATGTACT+TGG + tig0030985:19843-19862 Msa1445250:CDS 30.0%
TGATCTATTTGTGTTATCCT+TGG - tig0030985:19902-19921 Msa1445250:intergenic 30.0%
AATGAATACCCTTTATTGAG+TGG + tig0030985:20228-20247 Msa1445250:CDS 30.0%
AGTGGAAATGAAAATCATCA+TGG + tig0030985:20246-20265 Msa1445250:CDS 30.0%
CTCTCTCAGAATTTACATTT+AGG + tig0030985:20420-20439 Msa1445250:CDS 30.0%
TCTCAGAATTTACATTTAGG+AGG + tig0030985:20423-20442 Msa1445250:CDS 30.0%
CTCAGAATTTACATTTAGGA+GGG + tig0030985:20424-20443 Msa1445250:CDS 30.0%
!! TAATTTGTTCCTGAATGAGA+AGG - tig0030985:20504-20523 Msa1445250:intergenic 30.0%
TTGAAGTTTCAACAAAATCC+TGG + tig0030985:20623-20642 Msa1445250:three_prime_UTR 30.0%
!! TTATAAGACTCAAGTTGAGT+TGG + tig0030985:20702-20721 Msa1445250:three_prime_UTR 30.0%
! ATGGTATTGGAAAATTAACC+AGG + tig0030985:20756-20775 Msa1445250:three_prime_UTR 30.0%
AGATATGAAAGTGATGTGTA+TGG + tig0030985:20943-20962 Msa1445250:three_prime_UTR 30.0%
GATATGAAAGTGATGTGTAT+GGG + tig0030985:20944-20963 Msa1445250:three_prime_UTR 30.0%
!! TGCTAGCTCTATTATGATTG+GGG - tig0030985:14774-14793 Msa1445250:intergenic 35.0%
GAAGAAAAAAGTAGCTAGCA+AGG - tig0030985:15001-15020 Msa1445250:intergenic 35.0%
GATTTCAAGCAAGTAAAGTC+CGG - tig0030985:15073-15092 Msa1445250:intergenic 35.0%
GATGTTGATCCTGAAAATCA+TGG - tig0030985:15161-15180 Msa1445250:intergenic 35.0%
GTACGTAGTTTGGATTCATA+AGG - tig0030985:15457-15476 Msa1445250:intergenic 35.0%
! TTATTGTTAGTGGTAGCGTT+GGG - tig0030985:15530-15549 Msa1445250:intergenic 35.0%
! ATTATTGTTAGTGGTAGCGT+TGG - tig0030985:15531-15550 Msa1445250:intergenic 35.0%
AACGCTACCACTAACAATAA+TGG + tig0030985:15530-15549 Msa1445250:five_prime_UTR 35.0%
GAAACTTCATATGGTTGTGT+AGG - tig0030985:15676-15695 Msa1445250:intergenic 35.0%
!! TATGAAAACCAATTTGCTGC+GGG - tig0030985:15861-15880 Msa1445250:intergenic 35.0%
!! CTATGAAAACCAATTTGCTG+CGG - tig0030985:15862-15881 Msa1445250:intergenic 35.0%
!!! ACCATGAACGGTGTTATTTT+TGG + tig0030985:16006-16025 Msa1445250:CDS 35.0%
TCTTGATGAAGTTGTGAATG+TGG + tig0030985:16059-16078 Msa1445250:CDS 35.0%
TGAAGTTGTGAATGTGGATA+AGG + tig0030985:16065-16084 Msa1445250:CDS 35.0%
GAAGTTGTGAATGTGGATAA+GGG + tig0030985:16066-16085 Msa1445250:CDS 35.0%
AATCATCAAAGGAGAATCTG+TGG + tig0030985:16089-16108 Msa1445250:CDS 35.0%
! ATTGAATCTAGTTCAAGTGG+TGG + tig0030985:16156-16175 Msa1445250:CDS 35.0%
TAAAGATTGAGACAAGCCAA+AGG + tig0030985:16598-16617 Msa1445250:intron 35.0%
TCAGAGAGAATAATTTGGGT+CGG + tig0030985:16733-16752 Msa1445250:intron 35.0%
!! CAATCAATAATGGGTTCACT+TGG - tig0030985:16804-16823 Msa1445250:intergenic 35.0%
GAGAGTGAGAAGAAAAGTAA+AGG + tig0030985:16823-16842 Msa1445250:intron 35.0%
TCCATGGTAAAATAAGTGCA+GGG - tig0030985:17088-17107 Msa1445250:intergenic 35.0%
ATCCATGGTAAAATAAGTGC+AGG - tig0030985:17089-17108 Msa1445250:intergenic 35.0%
ATGATATGTATAGCGAGGAA+TGG + tig0030985:17150-17169 Msa1445250:intron 35.0%
TGATATGTATAGCGAGGAAT+GGG + tig0030985:17151-17170 Msa1445250:intron 35.0%
ATTTCCATTCGCGATGATTT+CGG - tig0030985:17180-17199 Msa1445250:intergenic 35.0%
CAACACTTTAAGTGCATGAT+CGG - tig0030985:17781-17800 Msa1445250:intergenic 35.0%
GTGTTAAGTTAGAAGGTTCT+AGG + tig0030985:18064-18083 Msa1445250:CDS 35.0%
GAATGATTCATAGCAATGCT+TGG + tig0030985:18139-18158 Msa1445250:CDS 35.0%
CTAGAGTTATGTCCATTAAG+TGG + tig0030985:18267-18286 Msa1445250:intron 35.0%
! ATAATTGAGGTGTCTGTGTT+TGG + tig0030985:18732-18751 Msa1445250:intron 35.0%
TCTTGCAAGCATAACCTTAT+CGG - tig0030985:19009-19028 Msa1445250:intergenic 35.0%
!!! TTCTGTACTTTTAAGGCTGT+TGG + tig0030985:19069-19088 Msa1445250:intron 35.0%
ACTACTGAGACATTCTAACA+AGG + tig0030985:19274-19293 Msa1445250:intron 35.0%
CTATAGCAGAATCCCAAAAT+AGG - tig0030985:19568-19587 Msa1445250:intergenic 35.0%
CTATAGATTTGAGTCGTTGA+AGG + tig0030985:19582-19601 Msa1445250:intron 35.0%
! GTCTCAAAATCCTGGATTTT+AGG + tig0030985:19613-19632 Msa1445250:intron 35.0%
!!! CTGGATTTTAGGGTTTAAGT+CGG + tig0030985:19624-19643 Msa1445250:intron 35.0%
!!! TGGATTTTAGGGTTTAAGTC+GGG + tig0030985:19625-19644 Msa1445250:intron 35.0%
AGAGAGTAAAACACCTCTAA+AGG - tig0030985:19762-19781 Msa1445250:intergenic 35.0%
AATGTACTTGGAAGAAACCA+AGG + tig0030985:19855-19874 Msa1445250:CDS 35.0%
TTGAAATCACTGTTGGAGAA+AGG - tig0030985:19999-20018 Msa1445250:intergenic 35.0%
TTGGAACTTGAAATCACTGT+TGG - tig0030985:20006-20025 Msa1445250:intergenic 35.0%
TTCAATGTCAACATCACCAA+TGG + tig0030985:20029-20048 Msa1445250:CDS 35.0%
TCAATGTCAACATCACCAAT+GGG + tig0030985:20030-20049 Msa1445250:CDS 35.0%
GAAACCAGAATTGGATTGAA+AGG - tig0030985:20070-20089 Msa1445250:intergenic 35.0%
TGAAAGGAAACTACCTTGAT+GGG - tig0030985:20136-20155 Msa1445250:intergenic 35.0%
TTGAAAGGAAACTACCTTGA+TGG - tig0030985:20137-20156 Msa1445250:intergenic 35.0%
TCAAGGTAGTTTCCTTTCAA+TGG + tig0030985:20137-20156 Msa1445250:CDS 35.0%
TAGTTTCCTTTCAATGGACA+TGG + tig0030985:20143-20162 Msa1445250:CDS 35.0%
TCAATTCCATGTCCATTGAA+AGG - tig0030985:20152-20171 Msa1445250:intergenic 35.0%
GGAAATGAAAATCATCATGG+TGG + tig0030985:20249-20268 Msa1445250:CDS 35.0%
AATGAAAATCATCATGGTGG+TGG + tig0030985:20252-20271 Msa1445250:CDS 35.0%
TGGTTATGGATCATTCTCAA+TGG + tig0030985:20272-20291 Msa1445250:CDS 35.0%
TCTCAATGGAAGATGTTAGA+AGG + tig0030985:20286-20305 Msa1445250:CDS 35.0%
TTAGAGAAACACCATTTCCA+TGG - tig0030985:20344-20363 Msa1445250:intergenic 35.0%
AATGGTGTTTCTCTAACTCT+TGG + tig0030985:20348-20367 Msa1445250:CDS 35.0%
AAGTTTCAACAAAATCCTGG+TGG + tig0030985:20626-20645 Msa1445250:three_prime_UTR 35.0%
!! CAAGTTGAGTTGGATTAAGT+TGG + tig0030985:20712-20731 Msa1445250:three_prime_UTR 35.0%
!! GAGTTGGATTAAGTTGGAAA+AGG + tig0030985:20718-20737 Msa1445250:three_prime_UTR 35.0%
GGAAAATTAACCAGGTATGT+AGG + tig0030985:20764-20783 Msa1445250:three_prime_UTR 35.0%
ATTTGGTTAGTACGTAGATG+TGG + tig0030985:20869-20888 Msa1445250:three_prime_UTR 35.0%
! GATGTGGTGGAAATCATTAA+AGG + tig0030985:20885-20904 Msa1445250:three_prime_UTR 35.0%
AAAGTGATGTGTATGGGATT+TGG + tig0030985:20950-20969 Msa1445250:three_prime_UTR 35.0%
TTCCACACGCAAAATTCACT+TGG + tig0030985:14723-14742 Msa1445250:five_prime_UTR 40.0%
! TAGCTCTATTATGATTGGGG+TGG - tig0030985:14771-14790 Msa1445250:intergenic 40.0%
!! AATGGAACTTTTGGAGGGTT+TGG - tig0030985:14809-14828 Msa1445250:intergenic 40.0%
AGGAGGGGAAGAAAGATTAA+TGG - tig0030985:14827-14846 Msa1445250:intergenic 40.0%
GATATGGCAACGTACTTTCA+TGG + tig0030985:15371-15390 Msa1445250:five_prime_UTR 40.0%
TCAGAGTAAGGTACGTAGTT+TGG - tig0030985:15467-15486 Msa1445250:intergenic 40.0%
AAACTACGTACCTTACTCTG+AGG + tig0030985:15466-15485 Msa1445250:five_prime_UTR 40.0%
! TTTTGTGGTTCCTCAGAGTA+AGG - tig0030985:15479-15498 Msa1445250:intergenic 40.0%
!! GCGAAAAGCATGTTTTGTGT+TGG - tig0030985:15503-15522 Msa1445250:intergenic 40.0%
GGGAGAACCATTATTGTTAG+TGG - tig0030985:15540-15559 Msa1445250:intergenic 40.0%
!! TGGTGTTGATTGAGTGATGA+AGG - tig0030985:15595-15614 Msa1445250:intergenic 40.0%
GAATAGTAACTCCAAGCAAG+TGG - tig0030985:15615-15634 Msa1445250:intergenic 40.0%
ATTCCACCTTCCAACTTTCA+TGG + tig0030985:15631-15650 Msa1445250:five_prime_UTR 40.0%
TTGGATCCATGAAAGTTGGA+AGG - tig0030985:15640-15659 Msa1445250:intergenic 40.0%
! AGTGTTGGATCCATGAAAGT+TGG - tig0030985:15644-15663 Msa1445250:intergenic 40.0%
! ATATGGTTGTGTAGGAGTGT+CGG - tig0030985:15668-15687 Msa1445250:intergenic 40.0%
TGGAAGGTGGAAACTTCATA+TGG - tig0030985:15685-15704 Msa1445250:intergenic 40.0%
TGATCCCCACATGTTATAGT+GGG - tig0030985:15743-15762 Msa1445250:intergenic 40.0%
GCCAAAAATAACACCGTTCA+TGG - tig0030985:16010-16029 Msa1445250:intergenic 40.0%
GTGGATAAGGGAATCATCAA+AGG + tig0030985:16078-16097 Msa1445250:CDS 40.0%
ATCAAAGGAGAATCTGTGGA+AGG + tig0030985:16093-16112 Msa1445250:CDS 40.0%
! AGTGGTGGAAGAGAAAACAA+TGG + tig0030985:16171-16190 Msa1445250:CDS 40.0%
GTGGAAGAGAAAACAATGGA+GGG + tig0030985:16175-16194 Msa1445250:CDS 40.0%
TCCTGTCAATTTCTGTCCTT+TGG - tig0030985:16617-16636 Msa1445250:intergenic 40.0%
AGCAAAAAAGCCACTTGATC+TGG + tig0030985:16704-16723 Msa1445250:intron 40.0%
CAGAGAGAATAATTTGGGTC+GGG + tig0030985:16734-16753 Msa1445250:intron 40.0%
GATCACATACAACAGCTGTA+TGG + tig0030985:16998-17017 Msa1445250:intron 40.0%
!!! TCCCTGCACTTATTTTACCA+TGG + tig0030985:17084-17103 Msa1445250:intron 40.0%
ATGTTACCATAGATCCACTC+CGG - tig0030985:17115-17134 Msa1445250:intergenic 40.0%
GGGAAATGATATGTATAGCG+AGG + tig0030985:17145-17164 Msa1445250:intron 40.0%
CGAATGGAAATATCATGACG+TGG + tig0030985:17189-17208 Msa1445250:intron 40.0%
TTATGGGTAGAAAACACGCT+AGG - tig0030985:17235-17254 Msa1445250:intergenic 40.0%
GAACAATGTAGGTAGAGCTA+AGG + tig0030985:17851-17870 Msa1445250:intron 40.0%
TCACACTTTGCATTTGATGG+TGG - tig0030985:17888-17907 Msa1445250:intergenic 40.0%
TCATCATTTGAGCAAGCAAC+AGG + tig0030985:17910-17929 Msa1445250:CDS 40.0%
TTTGAGCAAGCAACAGGATA+TGG + tig0030985:17916-17935 Msa1445250:CDS 40.0%
TGAGATTGTCTTCAAGGCTA+GGG - tig0030985:17962-17981 Msa1445250:intergenic 40.0%
TTGAGATTGTCTTCAAGGCT+AGG - tig0030985:17963-17982 Msa1445250:intergenic 40.0%
!! CTGCTTTGAGATTGTCTTCA+AGG - tig0030985:17968-17987 Msa1445250:intergenic 40.0%
TAAGACAGCTAGCAAGACTT+TGG + tig0030985:18023-18042 Msa1445250:CDS 40.0%
AAGACAGCTAGCAAGACTTT+GGG + tig0030985:18024-18043 Msa1445250:CDS 40.0%
TTTGGGTGAAGATGATTGCT+TGG + tig0030985:18041-18060 Msa1445250:CDS 40.0%
TTGGGTGAAGATGATTGCTT+GGG + tig0030985:18042-18061 Msa1445250:CDS 40.0%
TGCTTGGGTGTTAAGTTAGA+AGG + tig0030985:18057-18076 Msa1445250:CDS 40.0%
!! AGTTAGAAGGTTCTAGGCTT+CGG + tig0030985:18070-18089 Msa1445250:CDS 40.0%
TGATTCATAGCAATGCTTGG+AGG + tig0030985:18142-18161 Msa1445250:CDS 40.0%
AGAACAGAAACAGCTCTTTC+AGG - tig0030985:18183-18202 Msa1445250:intergenic 40.0%
ATAACCTTATCGGAGTCCTT+GGG - tig0030985:18999-19018 Msa1445250:intergenic 40.0%
GTTATGCTTGCAAGACAAAC+TGG + tig0030985:19014-19033 Msa1445250:CDS 40.0%
CAAGACAAACTGGACTTACT+AGG + tig0030985:19024-19043 Msa1445250:CDS 40.0%
CGACTTAAACCCTAAAATCC+AGG - tig0030985:19626-19645 Msa1445250:intergenic 40.0%
GCTAATTAGCAAGAGGGATA+TGG - tig0030985:19711-19730 Msa1445250:intergenic 40.0%
CAATGATAGAGCTTGAGTCT+TGG + tig0030985:19736-19755 Msa1445250:intron 40.0%
ATTATTCTCCTCTTGCTCCT+TGG - tig0030985:19875-19894 Msa1445250:intergenic 40.0%
AGAGGAGAATAATGACTCCA+AGG + tig0030985:19882-19901 Msa1445250:CDS 40.0%
! TCACTGTTGGAGAAAGGTTT+TGG - tig0030985:19993-20012 Msa1445250:intergenic 40.0%
TGCAAGATGGAAACCAGAAT+TGG - tig0030985:20079-20098 Msa1445250:intergenic 40.0%
!! AATTCTGGTTTCCATCTTGC+AGG + tig0030985:20078-20097 Msa1445250:CDS 40.0%
AGTCCAAAAAACTCCCATCA+AGG + tig0030985:20120-20139 Msa1445250:CDS 40.0%
!!! CTACCTTGATGGGAGTTTTT+TGG - tig0030985:20126-20145 Msa1445250:intergenic 40.0%
TTCAACTTCAAACTCTGTGG+TGG - tig0030985:20190-20209 Msa1445250:intergenic 40.0%
CCTTTCAACTTCAAACTCTG+TGG - tig0030985:20193-20212 Msa1445250:intergenic 40.0%
! CCACAGAGTTTGAAGTTGAA+AGG + tig0030985:20190-20209 Msa1445250:CDS 40.0%
!! AATCATCATGGTGGTGGTTA+TGG + tig0030985:20258-20277 Msa1445250:CDS 40.0%
TTAGTGAGCAATTAGCTCCT+AGG + tig0030985:20316-20335 Msa1445250:CDS 40.0%
CTGAGAGAGAAATCCATGTT+GGG - tig0030985:20409-20428 Msa1445250:intergenic 40.0%
TCTGAGAGAGAAATCCATGT+TGG - tig0030985:20410-20429 Msa1445250:intergenic 40.0%
! ATGAGAAGGAGTAGTGTTGA+TGG - tig0030985:20490-20509 Msa1445250:intergenic 40.0%
AACACTACTCCTTCTCATTC+AGG + tig0030985:20492-20511 Msa1445250:CDS 40.0%
TCATTCAACTCCTACATACC+TGG - tig0030985:20777-20796 Msa1445250:intergenic 40.0%
! GTCCAAGTGAATTTTGCGTG+TGG - tig0030985:14728-14747 Msa1445250:intergenic 45.0%
AGTAGACAAAGGCAGCTACA+AGG - tig0030985:14866-14885 Msa1445250:intergenic 45.0%
!! CAGTTCTGAAATCCAACCGT+CGG + tig0030985:15409-15428 Msa1445250:five_prime_UTR 45.0%
GTCTGTAAACCTTCTACCGA+CGG - tig0030985:15428-15447 Msa1445250:intergenic 45.0%
CTCAATCAACACCACTTGCT+TGG + tig0030985:15601-15620 Msa1445250:five_prime_UTR 45.0%
GATCCATGAAAGTTGGAAGG+TGG - tig0030985:15637-15656 Msa1445250:intergenic 45.0%
! CTTCCATCCATTTTCCTCCT+CGG + tig0030985:15699-15718 Msa1445250:five_prime_UTR 45.0%
TCGTCCCCACTATAACATGT+GGG + tig0030985:15735-15754 Msa1445250:exon 45.0%
GATCCCCACATGTTATAGTG+GGG - tig0030985:15742-15761 Msa1445250:intergenic 45.0%
CTGATCCCCACATGTTATAG+TGG - tig0030985:15744-15763 Msa1445250:intergenic 45.0%
CACTATAACATGTGGGGATC+AGG + tig0030985:15742-15761 Msa1445250:exon 45.0%
CATAGACCAGTTTATCAGCG+TGG + tig0030985:15877-15896 Msa1445250:CDS 45.0%
GACAAACCACGCTGATAAAC+TGG - tig0030985:15886-15905 Msa1445250:intergenic 45.0%
AGATACCTCAATCTCACCAG+AGG - tig0030985:15947-15966 Msa1445250:intergenic 45.0%
! TGGTGAGATTGAGGTATCTC+CGG + tig0030985:15948-15967 Msa1445250:CDS 45.0%
AAAGGAGAATCTGTGGAAGG+AGG + tig0030985:16096-16115 Msa1445250:CDS 45.0%
GGTGGAAGAGAAAACAATGG+AGG + tig0030985:16174-16193 Msa1445250:CDS 45.0%
! GCTTGTTAGCATGCTAGATG+AGG + tig0030985:16257-16276 Msa1445250:CDS 45.0%
GCCAAAGGACAGAAATTGAC+AGG + tig0030985:16613-16632 Msa1445250:intron 45.0%
CTGACATTCACCAGATCAAG+TGG - tig0030985:16717-16736 Msa1445250:intergenic 45.0%
GAAGGAATGCACAACTCACA+TGG + tig0030985:17597-17616 Msa1445250:intron 45.0%
!! CTGTTTCTGTTCTTCGTGCT+TGG + tig0030985:18190-18209 Msa1445250:CDS 45.0%
TACACACACACACACACACA+CGG - tig0030985:18809-18828 Msa1445250:intergenic 45.0%
TTATCCCAAGGACTCCGATA+AGG + tig0030985:18992-19011 Msa1445250:CDS 45.0%
CATAACCTTATCGGAGTCCT+TGG - tig0030985:19000-19019 Msa1445250:intergenic 45.0%
AACTGGACTTACTAGGAGTC+AGG + tig0030985:19031-19050 Msa1445250:CDS 45.0%
GAGCTGGCTAATTAGCAAGA+GGG - tig0030985:19717-19736 Msa1445250:intergenic 45.0%
TGAGCTGGCTAATTAGCAAG+AGG - tig0030985:19718-19737 Msa1445250:intergenic 45.0%
CTCAAGCTCTATCATTGAGC+TGG - tig0030985:19733-19752 Msa1445250:intergenic 45.0%
AGTTCGCTTGTGGAAACCAA+TGG + tig0030985:19825-19844 Msa1445250:CDS 45.0%
ATGTCAACATCACCAATGGG+AGG + tig0030985:20033-20052 Msa1445250:CDS 45.0%
GGGTCCTTTCAATCCAATTC+TGG + tig0030985:20063-20082 Msa1445250:CDS 45.0%
CATCAGATGATCCTGCAAGA+TGG - tig0030985:20092-20111 Msa1445250:intergenic 45.0%
CAGGATCATCTGATGTGCAA+AGG + tig0030985:20097-20116 Msa1445250:CDS 45.0%
CAATTAGCTCCTAGGTTCCA+TGG + tig0030985:20324-20343 Msa1445250:CDS 45.0%
ACACCATTTCCATGGAACCT+AGG - tig0030985:20336-20355 Msa1445250:intergenic 45.0%
AGGAGGGACGATTGATGAAA+TGG + tig0030985:20440-20459 Msa1445250:CDS 45.0%
GGAGGGACGATTGATGAAAT+GGG + tig0030985:20441-20460 Msa1445250:CDS 45.0%
GATTTCGTCAAACTCAGCGT+TGG + tig0030985:20655-20674 Msa1445250:three_prime_UTR 45.0%
TGGTTAGTACGTAGATGTGG+TGG + tig0030985:20872-20891 Msa1445250:three_prime_UTR 45.0%
!! TTGATAAAAAAAAAAAAAAA+AGG - tig0030985:18399-18418 Msa1445250:intergenic 5.0%
GACAAAGGCAGCTACAAGGA+TGG - tig0030985:14862-14881 Msa1445250:intergenic 50.0%
GAAATCCAACCGTCGGTAGA+AGG + tig0030985:15416-15435 Msa1445250:five_prime_UTR 50.0%
GTAAACCTTCTACCGACGGT+TGG - tig0030985:15424-15443 Msa1445250:intergenic 50.0%
TTGAATCCATGAAGCGCGTG+GGG - tig0030985:15560-15579 Msa1445250:intergenic 50.0%
CTTGAATCCATGAAGCGCGT+GGG - tig0030985:15561-15580 Msa1445250:intergenic 50.0%
ACTTGAATCCATGAAGCGCG+TGG - tig0030985:15562-15581 Msa1445250:intergenic 50.0%
! ATTGAGTGATGAAGGCGCGT+GGG - tig0030985:15587-15606 Msa1445250:intergenic 50.0%
!! TGTAGGAGTGTCGGTAGTGT+TGG - tig0030985:15659-15678 Msa1445250:intergenic 50.0%
GGAGGAAAATGGATGGAAGG+TGG - tig0030985:15698-15717 Msa1445250:intergenic 50.0%
CGAGGAGGAAAATGGATGGA+AGG - tig0030985:15701-15720 Msa1445250:intergenic 50.0%
TAGCCGAGGAGGAAAATGGA+TGG - tig0030985:15705-15724 Msa1445250:intergenic 50.0%
! CACATGTTATAGTGGGGACG+AGG - tig0030985:15736-15755 Msa1445250:intergenic 50.0%
CTCGTCCCCACTATAACATG+TGG + tig0030985:15734-15753 Msa1445250:exon 50.0%
CGTCCCCACTATAACATGTG+GGG + tig0030985:15736-15755 Msa1445250:exon 50.0%
GTTGCTGTGACAGCGTTATC+AGG - tig0030985:15778-15797 Msa1445250:intergenic 50.0%
! GGTGAGATTGAGGTATCTCC+GGG + tig0030985:15949-15968 Msa1445250:CDS 50.0%
GGTGGAGTTTCGACCATGAA+CGG + tig0030985:15994-16013 Msa1445250:CDS 50.0%
TTACCATGGATTTGCCGGAG+TGG + tig0030985:17098-17117 Msa1445250:intron 50.0%
GATTTGCCGGAGTGGATCTA+TGG + tig0030985:17106-17125 Msa1445250:intron 50.0%
GATGCCGAAATCATCGCGAA+TGG + tig0030985:17173-17192 Msa1445250:intron 50.0%
TGGGTAGAAAACACGCTAGG+AGG - tig0030985:17232-17251 Msa1445250:intergenic 50.0%
TGTGACCTGCAGTTATCCCA+AGG + tig0030985:18980-18999 Msa1445250:intron 50.0%
! GCTTGAGTCTTGGCCTTTAG+AGG + tig0030985:19746-19765 Msa1445250:intron 50.0%
TAAACGCCAGAGTTCGCTTG+TGG + tig0030985:19815-19834 Msa1445250:CDS 50.0%
TGGTTTCCACAAGCGAACTC+TGG - tig0030985:19824-19843 Msa1445250:intergenic 50.0%
GGAAGAAACCAAGGAGCAAG+AGG + tig0030985:19864-19883 Msa1445250:CDS 50.0%
ACATCACCAATGGGAGGAGA+AGG + tig0030985:20039-20058 Msa1445250:CDS 50.0%
GCTCCTAGGTTCCATGGAAA+TGG + tig0030985:20330-20349 Msa1445250:CDS 50.0%
!! CCATGTTGGGTTGAAGAGAG+AGG - tig0030985:20396-20415 Msa1445250:intergenic 50.0%
CCTCTCTCTTCAACCCAACA+TGG + tig0030985:20393-20412 Msa1445250:CDS 50.0%
GACGAAATCATGTTGCCACC+AGG - tig0030985:20644-20663 Msa1445250:intergenic 50.0%
TCTTTCTTCCCCTCCTCGTG+CGG + tig0030985:14831-14850 Msa1445250:five_prime_UTR 55.0%
ATGGAATTCCCGCACGAGGA+GGG - tig0030985:14843-14862 Msa1445250:intergenic 55.0%
AAGGATGGAATTCCCGCACG+AGG - tig0030985:14847-14866 Msa1445250:intergenic 55.0%
! GATTGAGTGATGAAGGCGCG+TGG - tig0030985:15588-15607 Msa1445250:intergenic 55.0%
ACGGTAGCCGAGGAGGAAAA+TGG - tig0030985:15709-15728 Msa1445250:intergenic 55.0%
! ATAGTGGGGACGAGGAGTCA+CGG - tig0030985:15728-15747 Msa1445250:intergenic 55.0%
! ATTTGCTGCGGGCGAAACTC+TGG - tig0030985:15850-15869 Msa1445250:intergenic 55.0%
GAGTTTCGCCCGCAGCAAAT+TGG + tig0030985:15850-15869 Msa1445250:CDS 55.0%
CTTCGCAGCAAACGCCTTAC+CGG + tig0030985:15917-15936 Msa1445250:CDS 55.0%
GATCCACTCCGGCAAATCCA+TGG - tig0030985:17104-17123 Msa1445250:intergenic 55.0%
ACCACCAACTCCGACAACAG+CGG + tig0030985:18100-18119 Msa1445250:CDS 55.0%
AATGCTTGGAGGCCTCAGAG+AGG + tig0030985:18153-18172 Msa1445250:CDS 55.0%
CTTTCAGGCAAGCCTCTCTG+AGG - tig0030985:18168-18187 Msa1445250:intergenic 55.0%
GGAGTCCTTGGGATAACTGC+AGG - tig0030985:18988-19007 Msa1445250:intergenic 55.0%
TCACCAATGGGAGGAGAAGG+AGG + tig0030985:20042-20061 Msa1445250:CDS 55.0%
CACCAATGGGAGGAGAAGGA+GGG + tig0030985:20043-20062 Msa1445250:CDS 55.0%
CTTTCTTCCCCTCCTCGTGC+GGG + tig0030985:14832-14851 Msa1445250:five_prime_UTR 60.0%
TGGAATTCCCGCACGAGGAG+GGG - tig0030985:14842-14861 Msa1445250:intergenic 60.0%
GATGGAATTCCCGCACGAGG+AGG - tig0030985:14844-14863 Msa1445250:intergenic 60.0%
GCAGCAAACGCCTTACCGGT+CGG + tig0030985:15921-15940 Msa1445250:CDS 60.0%
CAATCTCACCAGAGGCCGAC+CGG - tig0030985:15939-15958 Msa1445250:intergenic 60.0%
GTCGGCCTCTGGTGAGATTG+AGG + tig0030985:15939-15958 Msa1445250:CDS 60.0%
CCACCAACTCCGACAACAGC+GGG + tig0030985:18101-18120 Msa1445250:CDS 60.0%
GACCCTCCTTCTCCTCCCAT+TGG - tig0030985:20048-20067 Msa1445250:intergenic 60.0%
GGTTCTCCCCACGCGCTTCA+TGG + tig0030985:15551-15570 Msa1445250:five_prime_UTR 65.0%
AGGAGTCACGGTAGCCGAGG+AGG - tig0030985:15716-15735 Msa1445250:intergenic 65.0%
ACGAGGAGTCACGGTAGCCG+AGG - tig0030985:15719-15738 Msa1445250:intergenic 65.0%
TCACCAGAGGCCGACCGGTA+AGG - tig0030985:15934-15953 Msa1445250:intergenic 65.0%
! GAGGTATCTCCGGGTAGCCG+TGG + tig0030985:15958-15977 Msa1445250:CDS 65.0%
GTATCTCCGGGTAGCCGTGG+AGG + tig0030985:15961-15980 Msa1445250:CDS 65.0%
CACCACCTTCCTCGCCTCCA+CGG - tig0030985:15978-15997 Msa1445250:intergenic 65.0%
CCCGCTGTTGTCGGAGTTGG+TGG - tig0030985:18104-18123 Msa1445250:intergenic 65.0%
GTGCCCGCTGTTGTCGGAGT+TGG - tig0030985:18107-18126 Msa1445250:intergenic 65.0%
GCTGCAGTGCCCGCTGTTGT+CGG - tig0030985:18113-18132 Msa1445250:intergenic 65.0%
! CAGCGGGCACTGCAGCAACT+TGG + tig0030985:18117-18136 Msa1445250:CDS 65.0%
ACGCCTTACCGGTCGGCCTC+TGG + tig0030985:15928-15947 Msa1445250:CDS 70.0%
TCCTCGCCTCCACGGCTACC+CGG - tig0030985:15970-15989 Msa1445250:intergenic 70.0%
GGTAGCCGTGGAGGCGAGGA+AGG + tig0030985:15970-15989 Msa1445250:CDS 70.0%
AGCCGTGGAGGCGAGGAAGG+TGG + tig0030985:15973-15992 Msa1445250:CDS 70.0%
CGTGGAGGCGAGGAAGGTGG+TGG + tig0030985:15976-15995 Msa1445250:CDS 70.0%
TCCGGGTAGCCGTGGAGGCG+AGG + tig0030985:15966-15985 Msa1445250:CDS 75.0%
Chromosome Type Strat End Strand Name
tig0030985 gene 14717 21016 14717 ID=Msa1445250;Name=Msa1445250
tig0030985 mRNA 14717 21016 14717 ID=Msa1445250-mRNA-1;Parent=Msa1445250;Name=Msa1445250-mRNA-1;_AED=0.09;_eAED=0.09;_QI=799|1|1|1|0.75|0.6|5|426|584
tig0030985 exon 14717 14935 14717 ID=Msa1445250-mRNA-1:exon:14906;Parent=Msa1445250-mRNA-1
tig0030985 exon 15171 16278 15171 ID=Msa1445250-mRNA-1:exon:14907;Parent=Msa1445250-mRNA-1
tig0030985 exon 17862 18235 17862 ID=Msa1445250-mRNA-1:exon:14908;Parent=Msa1445250-mRNA-1
tig0030985 exon 18992 19052 18992 ID=Msa1445250-mRNA-1:exon:14909;Parent=Msa1445250-mRNA-1
tig0030985 exon 19799 21016 19799 ID=Msa1445250-mRNA-1:exon:14910;Parent=Msa1445250-mRNA-1
tig0030985 five_prime_UTR 14717 14935 14717 ID=Msa1445250-mRNA-1:five_prime_utr;Parent=Msa1445250-mRNA-1
tig0030985 five_prime_UTR 15171 15750 15171 ID=Msa1445250-mRNA-1:five_prime_utr;Parent=Msa1445250-mRNA-1
tig0030985 CDS 15751 16278 15751 ID=Msa1445250-mRNA-1:cds;Parent=Msa1445250-mRNA-1
tig0030985 CDS 17862 18235 17862 ID=Msa1445250-mRNA-1:cds;Parent=Msa1445250-mRNA-1
tig0030985 CDS 18992 19052 18992 ID=Msa1445250-mRNA-1:cds;Parent=Msa1445250-mRNA-1
tig0030985 CDS 19799 20590 19799 ID=Msa1445250-mRNA-1:cds;Parent=Msa1445250-mRNA-1
tig0030985 three_prime_UTR 20591 21016 20591 ID=Msa1445250-mRNA-1:three_prime_utr;Parent=Msa1445250-mRNA-1
Gene Sequence

>Msa1445250

ATGTGGGGATCAGGTAGCTTTCTACCTGATAACGCTGTCACAGCAACGACAACTGATAGATCAGAATGTTCAGATGTCGTTTCTGTGACAACATCTCCAGAGTTTCGCCCGCAGCAAATTGGTTTTCATAGACCAGTTTATCAGCGTGGTTTGTCTCTCAGTCTTTCTTCGCAGCAAACGCCTTACCGGTCGGCCTCTGGTGAGATTGAGGTATCTCCGGGTAGCCGTGGAGGCGAGGAAGGTGGTGGAGTTTCGACCATGAACGGTGTTATTTTTGGCTCGAAGTATATGAAAGTAGCACAAGAGCTTCTTGATGAAGTTGTGAATGTGGATAAGGGAATCATCAAAGGAGAATCTGTGGAAGGAGGTAATAGTAATAACAACAAAGAGAAGAGGAAAGCAAATATTGAATCTAGTTCAAGTGGTGGAAGAGAAAACAATGGAGGGAAACAAGTAGCTGAATTAAGCACTGCACAAAGACAAGAACTTCAGATGAAGAAGTCAAAGCTTGTTAGCATGCTAGATGAGGTAGAGCTAAGGTACAGACAATACCACCATCAAATGCAAAGTGTGATATCATCATTTGAGCAAGCAACAGGATATGGAGCATCAAAATCTTACACATCCCTAGCCTTGAAGACAATCTCAAAGCAGTTTCGAAGTCTAAAAGATTCAATCTCTTCACAAATTAAGACAGCTAGCAAGACTTTGGGTGAAGATGATTGCTTGGGTGTTAAGTTAGAAGGTTCTAGGCTTCGGTATGTCGACCACCAACTCCGACAACAGCGGGCACTGCAGCAACTTGGAATGATTCATAGCAATGCTTGGAGGCCTCAGAGAGGCTTGCCTGAAAGAGCTGTTTCTGTTCTTCGTGCTTGGCTTTTTGAACATTTCTTGCACCCTTATCCCAAGGACTCCGATAAGGTTATGCTTGCAAGACAAACTGGACTTACTAGGAGTCAGGTATCTAACTGGTTTATAAACGCCAGAGTTCGCTTGTGGAAACCAATGGTTGAAGAAATGTACTTGGAAGAAACCAAGGAGCAAGAGGAGAATAATGACTCCAAGGATAACACAAATAGATCAAAAGAATTAGGTGCCACAAAACTTGATCAAATTAATAATCTTCATTCAAAAGCAGAAAACTTCAACAACCAAAACCTTTCTCCAACAGTGATTTCAAGTTCCAATAATTCAATGTCAACATCACCAATGGGAGGAGAAGGAGGGTCCTTTCAATCCAATTCTGGTTTCCATCTTGCAGGATCATCTGATGTGCAAAGGAGTCCAAAAAACTCCCATCAAGGTAGTTTCCTTTCAATGGACATGGAATTGAAGTCTAATAGAGAGTCCACCACAGAGTTTGAAGTTGAAAGGCATAATCATGACAAAAATGAATACCCTTTATTGAGTGGAAATGAAAATCATCATGGTGGTGGTTATGGATCATTCTCAATGGAAGATGTTAGAAGGTTTAATGTTAGTGAGCAATTAGCTCCTAGGTTCCATGGAAATGGTGTTTCTCTAACTCTTGGACTACCTCATAATGAAAATATTCCTCTCTCTTCAACCCAACATGGATTTCTCTCTCAGAATTTACATTTAGGAGGGACGATTGATGAAATGGGAAGCAATGAGAATGAGTTTTGTACCATCAACACTACTCCTTCTCATTCAGGAACAAATTATGAGAGTATTGATATTGAAAACAGAAAGAGGTTTGCTGCTCAATTATTGCGAAATTTTGTGACCTAG
Protein sequence

>Msa1445250

MWGSGSFLPDNAVTATTTDRSECSDVVSVTTSPEFRPQQIGFHRPVYQRGLSLSLSSQQTPYRSASGEIEVSPGSRGGEEGGGVSTMNGVIFGSKYMKVAQELLDEVVNVDKGIIKGESVEGGNSNNNKEKRKANIESSSSGGRENNGGKQVAELSTAQRQELQMKKSKLVSMLDEVELRYRQYHHQMQSVISSFEQATGYGASKSYTSLALKTISKQFRSLKDSISSQIKTASKTLGEDDCLGVKLEGSRLRYVDHQLRQQRALQQLGMIHSNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYLEETKEQEENNDSKDNTNRSKELGATKLDQINNLHSKAENFNNQNLSPTVISSSNNSMSTSPMGGEGGSFQSNSGFHLAGSSDVQRSPKNSHQGSFLSMDMELKSNRESTTEFEVERHNHDKNEYPLLSGNENHHGGGYGSFSMEDVRRFNVSEQLAPRFHGNGVSLTLGLPHNENIPLSSTQHGFLSQNLHLGGTIDEMGSNENEFCTINTTPSHSGTNYESIDIENRKRFAAQLLRNFVT*