AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0938230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0938230 MtrunA17_Chr6g0454091 100.000 99 0 0 1 99 1 99 2.82e-69 202
Msa0938230 MtrunA17_Chr7g0218501 78.218 101 20 1 1 99 1 101 2.43e-51 157
Msa0938230 MtrunA17_Chr7g0224251 57.471 87 37 0 8 94 7 93 1.67e-32 109
Msa0938230 MtrunA17_Chr8g0386041 52.747 91 43 0 4 94 3 93 2.97e-31 106
Msa0938230 MtrunA17_Chr7g0224241 57.471 87 37 0 8 94 7 93 3.80e-29 107
Msa0938230 MtrunA17_Chr7g0268701 43.750 96 52 2 1 95 1 95 9.55e-25 90.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0938230 AT5G15460.2 69.892 93 28 0 1 93 1 93 2.88e-43 137
Msa0938230 AT5G15460.1 69.892 93 28 0 1 93 1 93 2.88e-43 137
Msa0938230 AT5G15460.4 69.892 93 28 0 1 93 1 93 2.88e-43 137
Msa0938230 AT3G01050.2 60.606 99 39 0 1 99 1 99 2.39e-41 132
Msa0938230 AT3G01050.3 60.606 99 39 0 1 99 1 99 2.39e-41 132
Msa0938230 AT3G01050.1 60.606 99 39 0 1 99 1 99 2.39e-41 132
Msa0938230 AT3G01050.4 60.606 99 39 0 1 99 1 99 2.39e-41 132
Msa0938230 AT3G01050.5 60.606 99 39 0 1 99 1 99 2.39e-41 132
Msa0938230 AT1G22050.1 55.556 99 44 0 1 99 1 99 1.66e-38 125
Msa0938230 AT1G77870.1 54.545 99 43 1 3 99 2 100 6.11e-33 111
Msa0938230 AT3G26980.1 53.333 90 42 0 4 93 3 92 6.86e-31 106
Msa0938230 AT4G24990.2 51.648 91 44 0 4 94 3 93 2.04e-30 105
Msa0938230 AT4G24990.1 51.648 91 44 0 4 94 3 93 2.04e-30 105
Msa0938230 AT5G15460.3 63.158 57 21 0 37 93 11 67 1.36e-18 74.3

Find 30 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTGTGCAACCACCTAATT+TGG 0.215657 6_3:-9975396 Msa0938230:CDS
AGCAAACCTTTGTCCAAATT+AGG 0.316921 6_3:+9975383 None:intergenic
ATGTGTGCGTTGGCACTTAC+TGG 0.330216 6_3:-9975291 None:intergenic
ATCAATTAGAGATCAAATTT+CGG 0.354770 6_3:-9976449 Msa0938230:CDS
ATCACTCTCAATACCAAAAC+AGG 0.397259 6_3:+9976623 None:intergenic
AGAATCTGTTTCTCTGAGTA+TGG 0.409372 6_3:-9976484 Msa0938230:exon
CAAATTGTGCAAAGTCTTGA+AGG 0.410163 6_3:-9976571 Msa0938230:five_prime_UTR
AGTCCATTGTGTAATCTTCC+TGG 0.429392 6_3:-9975440 Msa0938230:CDS
TCTGTTTCTCTGAGTATGGC+TGG 0.457554 6_3:-9976480 Msa0938230:exon
TGGTATTGAGAGTGATTAAG+AGG 0.459258 6_3:-9976616 Msa0938230:five_prime_UTR
TTGAGCGATGGATCGGATAT+TGG 0.459581 6_3:-9976426 Msa0938230:CDS
CATGTGATATCATCAATCAT+TGG 0.460726 6_3:-9977080 Msa0938230:five_prime_UTR
AAGAAAGTATTCTTACTCAA+TGG 0.476431 6_3:-9976362 Msa0938230:CDS
GATGTGAAGTTAATTTGTGC+TGG 0.476748 6_3:-9975503 Msa0938230:CDS
ATCAAATTTCGGTTGAGCGA+TGG 0.478567 6_3:-9976438 Msa0938230:CDS
TTCAGAAGAGACGGTGAAAG+TGG 0.489212 6_3:+9977106 None:intergenic
AAGTCTTGAAGGAGAGACTT+TGG 0.493107 6_3:-9976560 Msa0938230:five_prime_UTR
ATTCTTACTCAATGGCCAAA+AGG 0.495557 6_3:-9976354 Msa0938230:intron
ATTTCGGTTGAGCGATGGAT+CGG 0.507983 6_3:-9976433 Msa0938230:CDS
CTGTTTCTCTGAGTATGGCT+GGG 0.558929 6_3:-9976479 Msa0938230:exon
CAACCACCTAATTTGGACAA+AGG 0.572921 6_3:-9975389 Msa0938230:CDS
AAACCTTTGTCCAAATTAGG+TGG 0.576244 6_3:+9975386 None:intergenic
CACATGAAATTCAGAAGAGA+CGG 0.590169 6_3:+9977097 None:intergenic
GGAAAACAAAACATCACTCA+AGG 0.591364 6_3:-9977059 Msa0938230:intron
AGCATTGTTGTAACTCCACC+AGG 0.597774 6_3:+9975422 None:intergenic
CCATTGTGTAATCTTCCTGG+TGG 0.622842 6_3:-9975437 Msa0938230:CDS
GGAGAACAACAAAACAGTAG+AGG 0.643312 6_3:-9975471 Msa0938230:CDS
GTGTGTTAAAATGTGTGCGT+TGG 0.662640 6_3:-9975301 Msa0938230:three_prime_UTR
TGGAGTTACAACAATGCTTG+TGG 0.673028 6_3:-9975417 Msa0938230:CDS
CCACCAGGAAGATTACACAA+TGG 0.747125 6_3:+9975437 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAATGTTTATATTAATAA+TGG - chr6_3:9976628-9976647 Msa0938230:five_prime_UTR 10.0%
!! TCAAATGTTTATATTAATAA+TGG - chr6_3:9976628-9976647 Msa0938230:five_prime_UTR 10.0%
!!! TATGTTTTATTTATTTGGAT+TGG - chr6_3:9975684-9975703 Msa0938230:intron 15.0%
!! TACACTATGAATAAATAAAT+TGG + chr6_3:9975734-9975753 None:intergenic 15.0%
!!! TTAGTTGTTTAATCTTATTT+AGG - chr6_3:9976110-9976129 Msa0938230:intron 15.0%
!!! TAGTTGTTTAATCTTATTTA+GGG - chr6_3:9976111-9976130 Msa0938230:intron 15.0%
!! ATTGAATAACATGAAAAATT+AGG - chr6_3:9976494-9976513 Msa0938230:five_prime_UTR 15.0%
!! AAAAATTAGGAATATTAATG+TGG - chr6_3:9976507-9976526 Msa0938230:five_prime_UTR 15.0%
!!! TCATGTTTTCATAAATTTAT+CGG + chr6_3:9976718-9976737 None:intergenic 15.0%
!! TTCAATATAATCATAATTGT+TGG - chr6_3:9976743-9976762 Msa0938230:intron 15.0%
!!! TATGTTTTATTTATTTGGAT+TGG - chr6_3:9975684-9975703 Msa0938230:intron 15.0%
!! TACACTATGAATAAATAAAT+TGG + chr6_3:9975734-9975753 None:intergenic 15.0%
!!! TTAGTTGTTTAATCTTATTT+AGG - chr6_3:9976110-9976129 Msa0938230:intron 15.0%
!!! TAGTTGTTTAATCTTATTTA+GGG - chr6_3:9976111-9976130 Msa0938230:intron 15.0%
!! ATTGAATAACATGAAAAATT+AGG - chr6_3:9976494-9976513 Msa0938230:five_prime_UTR 15.0%
!! AAAAATTAGGAATATTAATG+TGG - chr6_3:9976507-9976526 Msa0938230:five_prime_UTR 15.0%
!!! TCATGTTTTCATAAATTTAT+CGG + chr6_3:9976718-9976737 None:intergenic 15.0%
!! TTCAATATAATCATAATTGT+TGG - chr6_3:9976743-9976762 Msa0938230:intron 15.0%
!!! TTTTCTCAGTTATGAATAAA+AGG + chr6_3:9975914-9975933 None:intergenic 20.0%
!! ATCAATTAGAGATCAAATTT+CGG - chr6_3:9975992-9976011 Msa0938230:intron 20.0%
!! TGATATAAGGAATATTAATG+AGG - chr6_3:9976540-9976559 Msa0938230:five_prime_UTR 20.0%
!!! ACATTTTAAGACTTTATAGT+TGG + chr6_3:9976828-9976847 None:intergenic 20.0%
!!! ATGTTTTGAAAGCTATTTAT+TGG - chr6_3:9977096-9977115 Msa0938230:five_prime_UTR 20.0%
!!! TTTTCTCAGTTATGAATAAA+AGG + chr6_3:9975914-9975933 None:intergenic 20.0%
!! ATCAATTAGAGATCAAATTT+CGG - chr6_3:9975992-9976011 Msa0938230:intron 20.0%
!! TGATATAAGGAATATTAATG+AGG - chr6_3:9976540-9976559 Msa0938230:five_prime_UTR 20.0%
!!! ACATTTTAAGACTTTATAGT+TGG + chr6_3:9976828-9976847 None:intergenic 20.0%
!!! ATGTTTTGAAAGCTATTTAT+TGG - chr6_3:9977096-9977115 Msa0938230:five_prime_UTR 20.0%
!!! TTCTTTGTTCTTGTTATTGT+TGG - chr6_3:9975409-9975428 Msa0938230:CDS 25.0%
! TGTTCATTTGAATATTGTGT+TGG - chr6_3:9975451-9975470 Msa0938230:CDS 25.0%
!!! TTTGAATATTGTGTTGGTTT+TGG - chr6_3:9975457-9975476 Msa0938230:CDS 25.0%
!!! ATTCCTTTTGTAAGTTTGTT+TGG - chr6_3:9975494-9975513 Msa0938230:CDS 25.0%
! AAACCAAACAAACTTACAAA+AGG + chr6_3:9975500-9975519 None:intergenic 25.0%
!!! AAGAAAGTATTCTTACTCAA+TGG - chr6_3:9976079-9976098 Msa0938230:intron 25.0%
!! AGATTAAACAACTAACCTTT+TGG + chr6_3:9976105-9976124 None:intergenic 25.0%
!! AATCTTATTTAGGGTTTGTT+TGG - chr6_3:9976120-9976139 Msa0938230:intron 25.0%
! ACTTATTTGAGCTTATTTAC+TGG - chr6_3:9976147-9976166 Msa0938230:intron 25.0%
!!! GTTATTTTCATACACTATCT+TGG + chr6_3:9976295-9976314 None:intergenic 25.0%
! ATTGGTATCTTAGTATTCAT+AGG + chr6_3:9976419-9976438 None:intergenic 25.0%
! ATATACTGCAAATTAAGAAC+TGG - chr6_3:9976460-9976479 Msa0938230:CDS 25.0%
!!! TGGATGTATTGATTGATATA+AGG - chr6_3:9976527-9976546 Msa0938230:five_prime_UTR 25.0%
! TAATGGTTTAACATTGTATG+AGG - chr6_3:9976645-9976664 Msa0938230:intron 25.0%
!!! GTGTTTCTTTTTTGAAGATA+AGG - chr6_3:9976892-9976911 Msa0938230:intron 25.0%
!!! TTTTTTGAAGATAAGGAGTA+TGG - chr6_3:9976899-9976918 Msa0938230:intron 25.0%
!! TTCACATCTTTTACAGTTTT+TGG + chr6_3:9976926-9976945 None:intergenic 25.0%
! AATTTGTGCTGGAAAAATAT+TGG - chr6_3:9976949-9976968 Msa0938230:intron 25.0%
!! TTTTAACACACTATAATTGC+AGG + chr6_3:9977131-9977150 None:intergenic 25.0%
!!! TTCTTTGTTCTTGTTATTGT+TGG - chr6_3:9975409-9975428 Msa0938230:CDS 25.0%
! TGTTCATTTGAATATTGTGT+TGG - chr6_3:9975451-9975470 Msa0938230:CDS 25.0%
!!! TTTGAATATTGTGTTGGTTT+TGG - chr6_3:9975457-9975476 Msa0938230:CDS 25.0%
!!! ATTCCTTTTGTAAGTTTGTT+TGG - chr6_3:9975494-9975513 Msa0938230:CDS 25.0%
! AAACCAAACAAACTTACAAA+AGG + chr6_3:9975500-9975519 None:intergenic 25.0%
!!! AAGAAAGTATTCTTACTCAA+TGG - chr6_3:9976079-9976098 Msa0938230:intron 25.0%
!! AGATTAAACAACTAACCTTT+TGG + chr6_3:9976105-9976124 None:intergenic 25.0%
!! AATCTTATTTAGGGTTTGTT+TGG - chr6_3:9976120-9976139 Msa0938230:intron 25.0%
! ACTTATTTGAGCTTATTTAC+TGG - chr6_3:9976147-9976166 Msa0938230:intron 25.0%
!!! GTTATTTTCATACACTATCT+TGG + chr6_3:9976295-9976314 None:intergenic 25.0%
! ATTGGTATCTTAGTATTCAT+AGG + chr6_3:9976419-9976438 None:intergenic 25.0%
! ATATACTGCAAATTAAGAAC+TGG - chr6_3:9976460-9976479 Msa0938230:CDS 25.0%
!!! TGGATGTATTGATTGATATA+AGG - chr6_3:9976527-9976546 Msa0938230:five_prime_UTR 25.0%
! TAATGGTTTAACATTGTATG+AGG - chr6_3:9976645-9976664 Msa0938230:intron 25.0%
!!! GTGTTTCTTTTTTGAAGATA+AGG - chr6_3:9976892-9976911 Msa0938230:intron 25.0%
!!! TTTTTTGAAGATAAGGAGTA+TGG - chr6_3:9976899-9976918 Msa0938230:intron 25.0%
!! TTCACATCTTTTACAGTTTT+TGG + chr6_3:9976926-9976945 None:intergenic 25.0%
! AATTTGTGCTGGAAAAATAT+TGG - chr6_3:9976949-9976968 Msa0938230:intron 25.0%
!! TTTTAACACACTATAATTGC+AGG + chr6_3:9977131-9977150 None:intergenic 25.0%
CATGTGATATCATCAATCAT+TGG - chr6_3:9975361-9975380 Msa0938230:exon 30.0%
AACAAACAAGCAATGATCAT+AGG + chr6_3:9975537-9975556 None:intergenic 30.0%
TATGATCATTGCTTGTTTGT+TGG - chr6_3:9975536-9975555 Msa0938230:intron 30.0%
! AAATCTGAAACAGTGAAGAA+AGG + chr6_3:9975793-9975812 None:intergenic 30.0%
GTTTGTAAGAGCTTATTTAC+TGG - chr6_3:9976189-9976208 Msa0938230:intron 30.0%
AGTATTCATAGGAAGAAAAG+AGG + chr6_3:9976408-9976427 None:intergenic 30.0%
TCATTACAACAGACACAAAT+TGG + chr6_3:9976437-9976456 None:intergenic 30.0%
TGATGATTCCATTTAAGTGT+AGG - chr6_3:9976575-9976594 Msa0938230:five_prime_UTR 30.0%
GTTACAATCCTACACTTAAA+TGG + chr6_3:9976586-9976605 None:intergenic 30.0%
CATGTGATATCATCAATCAT+TGG - chr6_3:9975361-9975380 Msa0938230:exon 30.0%
AACAAACAAGCAATGATCAT+AGG + chr6_3:9975537-9975556 None:intergenic 30.0%
TATGATCATTGCTTGTTTGT+TGG - chr6_3:9975536-9975555 Msa0938230:intron 30.0%
! AAATCTGAAACAGTGAAGAA+AGG + chr6_3:9975793-9975812 None:intergenic 30.0%
GTTTGTAAGAGCTTATTTAC+TGG - chr6_3:9976189-9976208 Msa0938230:intron 30.0%
AGTATTCATAGGAAGAAAAG+AGG + chr6_3:9976408-9976427 None:intergenic 30.0%
TCATTACAACAGACACAAAT+TGG + chr6_3:9976437-9976456 None:intergenic 30.0%
TGATGATTCCATTTAAGTGT+AGG - chr6_3:9976575-9976594 Msa0938230:five_prime_UTR 30.0%
GTTACAATCCTACACTTAAA+TGG + chr6_3:9976586-9976605 None:intergenic 30.0%
CACATGAAATTCAGAAGAGA+CGG + chr6_3:9975347-9975366 None:intergenic 35.0%
GGAAAACAAAACATCACTCA+AGG - chr6_3:9975382-9975401 Msa0938230:CDS 35.0%
AATTTGAATTCCGTCTCTTG+AGG + chr6_3:9975623-9975642 None:intergenic 35.0%
! TTAATGGACAAATGTCTCAG+AGG + chr6_3:9975647-9975666 None:intergenic 35.0%
! TTATTTGGATTGGACAGACA+TGG - chr6_3:9975694-9975713 Msa0938230:intron 35.0%
! TCAGATTTTGCATCCTGTTT+TGG - chr6_3:9975805-9975824 Msa0938230:intron 35.0%
ATCACTCTCAATACCAAAAC+AGG + chr6_3:9975821-9975840 None:intergenic 35.0%
! TGGTATTGAGAGTGATTAAG+AGG - chr6_3:9975825-9975844 Msa0938230:intron 35.0%
CAAATTGTGCAAAGTCTTGA+AGG - chr6_3:9975870-9975889 Msa0938230:intron 35.0%
! AGAATCTGTTTCTCTGAGTA+TGG - chr6_3:9975957-9975976 Msa0938230:intron 35.0%
ATTCTTACTCAATGGCCAAA+AGG - chr6_3:9976087-9976106 Msa0938230:intron 35.0%
!! GATGTGAAGTTAATTTGTGC+TGG - chr6_3:9976938-9976957 Msa0938230:intron 35.0%
AAACCTTTGTCCAAATTAGG+TGG + chr6_3:9977058-9977077 None:intergenic 35.0%
AGCAAACCTTTGTCCAAATT+AGG + chr6_3:9977061-9977080 None:intergenic 35.0%
CACATGAAATTCAGAAGAGA+CGG + chr6_3:9975347-9975366 None:intergenic 35.0%
GGAAAACAAAACATCACTCA+AGG - chr6_3:9975382-9975401 Msa0938230:CDS 35.0%
AATTTGAATTCCGTCTCTTG+AGG + chr6_3:9975623-9975642 None:intergenic 35.0%
! TTAATGGACAAATGTCTCAG+AGG + chr6_3:9975647-9975666 None:intergenic 35.0%
! TTATTTGGATTGGACAGACA+TGG - chr6_3:9975694-9975713 Msa0938230:intron 35.0%
! TCAGATTTTGCATCCTGTTT+TGG - chr6_3:9975805-9975824 Msa0938230:intron 35.0%
ATCACTCTCAATACCAAAAC+AGG + chr6_3:9975821-9975840 None:intergenic 35.0%
! TGGTATTGAGAGTGATTAAG+AGG - chr6_3:9975825-9975844 Msa0938230:intron 35.0%
CAAATTGTGCAAAGTCTTGA+AGG - chr6_3:9975870-9975889 Msa0938230:intron 35.0%
! AGAATCTGTTTCTCTGAGTA+TGG - chr6_3:9975957-9975976 Msa0938230:intron 35.0%
ATTCTTACTCAATGGCCAAA+AGG - chr6_3:9976087-9976106 Msa0938230:intron 35.0%
!! GATGTGAAGTTAATTTGTGC+TGG - chr6_3:9976938-9976957 Msa0938230:intron 35.0%
AAACCTTTGTCCAAATTAGG+TGG + chr6_3:9977058-9977077 None:intergenic 35.0%
AGCAAACCTTTGTCCAAATT+AGG + chr6_3:9977061-9977080 None:intergenic 35.0%
TTCATGAGTTGTTAGCTCAG+TGG - chr6_3:9975578-9975597 Msa0938230:intron 40.0%
GACTTTGTAACCTCAAGAGA+CGG - chr6_3:9975610-9975629 Msa0938230:intron 40.0%
AAGTCTTGAAGGAGAGACTT+TGG - chr6_3:9975881-9975900 Msa0938230:intron 40.0%
ATCAAATTTCGGTTGAGCGA+TGG - chr6_3:9976003-9976022 Msa0938230:intron 40.0%
! TAGCAGCAGCAAAACTTTTC+GGG + chr6_3:9976041-9976060 None:intergenic 40.0%
! GTAGCAGCAGCAAAACTTTT+CGG + chr6_3:9976042-9976061 None:intergenic 40.0%
TTGGAGAGCTTATGGAAAAC+AGG + chr6_3:9976276-9976295 None:intergenic 40.0%
ACACTATCTTGGAGAGCTTA+TGG + chr6_3:9976284-9976303 None:intergenic 40.0%
!! GGTGTCGACATATCAATGTT+GGG + chr6_3:9976697-9976716 None:intergenic 40.0%
! ACGTCTTGAATCAGAAGTGT+CGG - chr6_3:9976793-9976812 Msa0938230:intron 40.0%
GGAGAACAACAAAACAGTAG+AGG - chr6_3:9976970-9976989 Msa0938230:intron 40.0%
AGTCCATTGTGTAATCTTCC+TGG - chr6_3:9977001-9977020 Msa0938230:intron 40.0%
TGGAGTTACAACAATGCTTG+TGG - chr6_3:9977024-9977043 Msa0938230:intron 40.0%
CAACCACCTAATTTGGACAA+AGG - chr6_3:9977052-9977071 Msa0938230:intron 40.0%
GTGTGTTAAAATGTGTGCGT+TGG - chr6_3:9977140-9977159 Msa0938230:five_prime_UTR 40.0%
TTCATGAGTTGTTAGCTCAG+TGG - chr6_3:9975578-9975597 Msa0938230:intron 40.0%
GACTTTGTAACCTCAAGAGA+CGG - chr6_3:9975610-9975629 Msa0938230:intron 40.0%
AAGTCTTGAAGGAGAGACTT+TGG - chr6_3:9975881-9975900 Msa0938230:intron 40.0%
ATCAAATTTCGGTTGAGCGA+TGG - chr6_3:9976003-9976022 Msa0938230:intron 40.0%
! TAGCAGCAGCAAAACTTTTC+GGG + chr6_3:9976041-9976060 None:intergenic 40.0%
! GTAGCAGCAGCAAAACTTTT+CGG + chr6_3:9976042-9976061 None:intergenic 40.0%
TTGGAGAGCTTATGGAAAAC+AGG + chr6_3:9976276-9976295 None:intergenic 40.0%
ACACTATCTTGGAGAGCTTA+TGG + chr6_3:9976284-9976303 None:intergenic 40.0%
!! GGTGTCGACATATCAATGTT+GGG + chr6_3:9976697-9976716 None:intergenic 40.0%
! ACGTCTTGAATCAGAAGTGT+CGG - chr6_3:9976793-9976812 Msa0938230:intron 40.0%
GGAGAACAACAAAACAGTAG+AGG - chr6_3:9976970-9976989 Msa0938230:intron 40.0%
AGTCCATTGTGTAATCTTCC+TGG - chr6_3:9977001-9977020 Msa0938230:intron 40.0%
TGGAGTTACAACAATGCTTG+TGG - chr6_3:9977024-9977043 Msa0938230:intron 40.0%
CAACCACCTAATTTGGACAA+AGG - chr6_3:9977052-9977071 Msa0938230:intron 40.0%
GTGTGTTAAAATGTGTGCGT+TGG - chr6_3:9977140-9977159 Msa0938230:five_prime_UTR 40.0%
TTCAGAAGAGACGGTGAAAG+TGG + chr6_3:9975338-9975357 None:intergenic 45.0%
! TCTGTTTCTCTGAGTATGGC+TGG - chr6_3:9975961-9975980 Msa0938230:intron 45.0%
! CTGTTTCTCTGAGTATGGCT+GGG - chr6_3:9975962-9975981 Msa0938230:intron 45.0%
ATTTCGGTTGAGCGATGGAT+CGG - chr6_3:9976008-9976027 Msa0938230:intron 45.0%
TTGAGCGATGGATCGGATAT+TGG - chr6_3:9976015-9976034 Msa0938230:intron 45.0%
!! CGGTGTCGACATATCAATGT+TGG + chr6_3:9976698-9976717 None:intergenic 45.0%
TTCTGATTCAAGACGTGTCC+TGG + chr6_3:9976789-9976808 None:intergenic 45.0%
CCACCAGGAAGATTACACAA+TGG + chr6_3:9977007-9977026 None:intergenic 45.0%
CCATTGTGTAATCTTCCTGG+TGG - chr6_3:9977004-9977023 Msa0938230:intron 45.0%
AGCATTGTTGTAACTCCACC+AGG + chr6_3:9977022-9977041 None:intergenic 45.0%
GGTTGTGCAACCACCTAATT+TGG - chr6_3:9977045-9977064 Msa0938230:intron 45.0%
TTCAGAAGAGACGGTGAAAG+TGG + chr6_3:9975338-9975357 None:intergenic 45.0%
! TCTGTTTCTCTGAGTATGGC+TGG - chr6_3:9975961-9975980 Msa0938230:intron 45.0%
! CTGTTTCTCTGAGTATGGCT+GGG - chr6_3:9975962-9975981 Msa0938230:intron 45.0%
ATTTCGGTTGAGCGATGGAT+CGG - chr6_3:9976008-9976027 Msa0938230:intron 45.0%
TTGAGCGATGGATCGGATAT+TGG - chr6_3:9976015-9976034 Msa0938230:intron 45.0%
!! CGGTGTCGACATATCAATGT+TGG + chr6_3:9976698-9976717 None:intergenic 45.0%
TTCTGATTCAAGACGTGTCC+TGG + chr6_3:9976789-9976808 None:intergenic 45.0%
CCACCAGGAAGATTACACAA+TGG + chr6_3:9977007-9977026 None:intergenic 45.0%
CCATTGTGTAATCTTCCTGG+TGG - chr6_3:9977004-9977023 Msa0938230:intron 45.0%
AGCATTGTTGTAACTCCACC+AGG + chr6_3:9977022-9977041 None:intergenic 45.0%
GGTTGTGCAACCACCTAATT+TGG - chr6_3:9977045-9977064 Msa0938230:intron 45.0%
!!! TAAAATGATTTTATTTTTAA+TGG + chr6_3:9975663-9975682 None:intergenic 5.0%
!!! TTTATTATGTTTTATTTATT+TGG - chr6_3:9975679-9975698 Msa0938230:intron 5.0%
!!! TAAAATGATTTTATTTTTAA+TGG + chr6_3:9975663-9975682 None:intergenic 5.0%
!!! TTTATTATGTTTTATTTATT+TGG - chr6_3:9975679-9975698 Msa0938230:intron 5.0%
TCGTGTAAGTGTCAGACACC+AGG - chr6_3:9976768-9976787 Msa0938230:intron 50.0%
TCGTGTAAGTGTCAGACACC+AGG - chr6_3:9976768-9976787 Msa0938230:intron 50.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 9975293 9977170 9975293 ID=Msa0938230;Name=Msa0938230
chr6_3 mRNA 9975293 9977170 9975293 ID=Msa0938230-mRNA-1;Parent=Msa0938230;Name=Msa0938230-mRNA-1;_AED=0.20;_eAED=0.20;_QI=278|1|1|1|0.5|0.33|3|77|105
chr6_3 exon 9975293 9975554 9975293 ID=Msa0938230-mRNA-1:exon:3167;Parent=Msa0938230-mRNA-1
chr6_3 exon 9976355 9976654 9976355 ID=Msa0938230-mRNA-1:exon:3166;Parent=Msa0938230-mRNA-1
chr6_3 exon 9977060 9977170 9977060 ID=Msa0938230-mRNA-1:exon:3165;Parent=Msa0938230-mRNA-1
chr6_3 five_prime_UTR 9977060 9977170 9977060 ID=Msa0938230-mRNA-1:five_prime_utr;Parent=Msa0938230-mRNA-1
chr6_3 five_prime_UTR 9976488 9976654 9976488 ID=Msa0938230-mRNA-1:five_prime_utr;Parent=Msa0938230-mRNA-1
chr6_3 CDS 9976355 9976487 9976355 ID=Msa0938230-mRNA-1:cds;Parent=Msa0938230-mRNA-1
chr6_3 CDS 9975370 9975554 9975370 ID=Msa0938230-mRNA-1:cds;Parent=Msa0938230-mRNA-1
chr6_3 three_prime_UTR 9975293 9975369 9975293 ID=Msa0938230-mRNA-1:three_prime_utr;Parent=Msa0938230-mRNA-1
Gene Sequence

>Msa0938230

ATGGCTGGGAAACAAGATCAATTAGAGATCAAATTTCGGTTGAGCGATGGATCGGATATTGGCCCGAAAAGTTTTGCTGCTGCTACTAGTATTGCAACTTTGAAAGAAAGTATTCTTACTCAATGGCCAAAAGATAAGGAGTATGGTCCAAAAACTGTAAAAGATGTGAAGTTAATTTGTGCTGGAAAAATATTGGAGAACAACAAAACAGTAGAGGAATGTCAGAGTCCATTGTGTAATCTTCCTGGTGGAGTTACAACAATGCTTGTGGTTGTGCAACCACCTAATTTGGACAAAGGTTTGCTATTTATTTCTTAA
Protein sequence

>Msa0938230

MAGKQDQLEIKFRLSDGSDIGPKSFAAATSIATLKESILTQWPKDKEYGPKTVKDVKLICAGKILENNKTVEECQSPLCNLPGGVTTMLVVVQPPNLDKGLLFIS*