Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0180500 | Msa0549910 | 0.808013 | 3.814533e-50 | -8.615850e-47 |
| Msa0194440 | Msa0549910 | 0.805826 | 1.106770e-49 | -8.615850e-47 |
| Msa0214300 | Msa0549910 | 0.801008 | 1.102729e-48 | -8.615850e-47 |
| Msa0223410 | Msa0549910 | -0.802272 | 6.071001e-49 | -8.615850e-47 |
| Msa0369460 | Msa0549910 | 0.818612 | 1.789627e-52 | -8.615850e-47 |
| Msa0405370 | Msa0549910 | 0.804878 | 1.748674e-49 | -8.615850e-47 |
| Msa0278110 | Msa0549910 | 0.815989 | 6.968254e-52 | -8.615850e-47 |
| Msa0279510 | Msa0549910 | 0.802549 | 5.323135e-49 | -8.615850e-47 |
| Msa0344690 | Msa0549910 | -0.802219 | 6.223410e-49 | -8.615850e-47 |
| Msa0363050 | Msa0549910 | 0.803027 | 4.241055e-49 | -8.615850e-47 |
| Msa0545700 | Msa0549910 | 0.823013 | 1.740753e-53 | -8.615850e-47 |
| Msa0549910 | Msa0587310 | 0.819796 | 9.623870e-53 | -8.615850e-47 |
| Msa0549910 | Msa0637710 | 0.830986 | 2.155848e-55 | -8.615850e-47 |
| Msa0549910 | Msa0820850 | 0.801128 | 1.041820e-48 | -8.615850e-47 |
| Msa0549910 | Msa0861130 | 0.800358 | 1.496566e-48 | -8.615850e-47 |
| Msa0549910 | Msa0899450 | 0.816942 | 4.262471e-52 | -8.615850e-47 |
| Msa0549910 | Msa0927380 | 0.822694 | 2.065396e-53 | -8.615850e-47 |
| Msa0549910 | Msa0938230 | 0.801142 | 1.035414e-48 | -8.615850e-47 |
| Msa0549910 | Msa0960640 | 0.807116 | 5.913827e-50 | -8.615850e-47 |
| Msa0549910 | Msa0964900 | 0.808757 | 2.647520e-50 | -8.615850e-47 |
| Msa0549910 | Msa0974080 | 0.808559 | 2.917784e-50 | -8.615850e-47 |
| Msa0549910 | Msa0999220 | 0.832730 | 8.001050e-56 | -8.615850e-47 |
| Msa0549910 | Msa1011610 | 0.810107 | 1.358278e-50 | -8.615850e-47 |
| Msa0549910 | Msa1088950 | 0.804675 | 1.927350e-49 | -8.615850e-47 |
| Msa0549910 | Msa1184840 | 0.806324 | 8.694857e-50 | -8.615850e-47 |
| Msa0549910 | Msa1284680 | 0.806057 | 9.893531e-50 | -8.615850e-47 |
| Msa0549910 | Msa1306850 | 0.802427 | 5.639510e-49 | -8.615850e-47 |
| Msa0549910 | Msa1372760 | 0.812738 | 3.645899e-51 | -8.615850e-47 |
| Msa0549910 | Msa1407060 | 0.806493 | 8.007890e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 17 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCGAGCGCACTAATGATT+TGG | 0.381285 | 4_1:-45169599 | Msa0549910:CDS |
| TCGTGAGCAGGAAACATATC+AGG | 0.422283 | 4_1:-45169773 | Msa0549910:intron |
| TTTAAAAGACAGAGCATCTT+GGG | 0.423381 | 4_1:-45171063 | None:intergenic |
| ATTTAAAAGACAGAGCATCT+TGG | 0.467000 | 4_1:-45171064 | None:intergenic |
| ACACCTCTAGCTCCACAGAT+AGG | 0.521451 | 4_1:+45171012 | None:intergenic |
| TGTACAAGTATCCTATCTGC+AGG | 0.549200 | 4_1:-45170992 | Msa0549910:CDS |
| CATCCTATCTGTGGAGCTAG+AGG | 0.561087 | 4_1:-45171015 | Msa0549910:CDS |
| CAGGTCGAGCTCCTGCAGAT+AGG | 0.563343 | 4_1:+45170981 | None:intergenic |
| TCAAGGAGGATCAACCTCCT+TGG | 0.569770 | 4_1:+45169720 | None:intergenic |
| CTATCTGCAGGAGCTCGACC+TGG | 0.575245 | 4_1:-45170980 | Msa0549910:intron |
| GGCTCAAGAATAGAATTGAA+AGG | 0.584461 | 4_1:-45171042 | Msa0549910:CDS |
| AAAGGAAATCATCCTATCTG+TGG | 0.596185 | 4_1:-45171024 | Msa0549910:CDS |
| AGAGAGAGAAAACACAGGAG+AGG | 0.643388 | 4_1:-45169627 | Msa0549910:CDS |
| GGCATTTGAAAATGACACCA+AGG | 0.643916 | 4_1:-45169737 | Msa0549910:CDS |
| ATATCAGGAGAAGCTAGTGA+AGG | 0.653116 | 4_1:-45169758 | Msa0549910:CDS |
| ATTAAAGAGAGAGAAAACAC+AGG | 0.660359 | 4_1:-45169632 | Msa0549910:CDS |
| ATTTGAAAATGACACCAAGG+AGG | 0.720696 | 4_1:-45169734 | Msa0549910:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAATGCTCATAAAAA+CGG | + | chr4_1:45169981-45170000 | None:intergenic | 15.0% |
| !!! | AAATATTTTATCAACTCATT+TGG | - | chr4_1:45170057-45170076 | Msa0549910:intron | 15.0% |
| !!! | TTGTTCATTTTGATTTTAAT+AGG | - | chr4_1:45170329-45170348 | Msa0549910:intron | 15.0% |
| !! | TAAATAGAGTAAACATAAAA+AGG | + | chr4_1:45170593-45170612 | None:intergenic | 15.0% |
| !! | AATAAAAATGCTCATAAAAA+CGG | + | chr4_1:45169981-45170000 | None:intergenic | 15.0% |
| !!! | AAATATTTTATCAACTCATT+TGG | - | chr4_1:45170057-45170076 | Msa0549910:intron | 15.0% |
| !!! | TTGTTCATTTTGATTTTAAT+AGG | - | chr4_1:45170329-45170348 | Msa0549910:intron | 15.0% |
| !! | TAAATAGAGTAAACATAAAA+AGG | + | chr4_1:45170593-45170612 | None:intergenic | 15.0% |
| !!! | TTGTAGTTTTAGTTTATGTT+TGG | - | chr4_1:45169716-45169735 | Msa0549910:intron | 20.0% |
| !! | ATAAAAATGCTCATAAAAAC+GGG | + | chr4_1:45169980-45169999 | None:intergenic | 20.0% |
| !! | CTTTATTACACTACTTAATT+AGG | + | chr4_1:45170441-45170460 | None:intergenic | 20.0% |
| !! | GTGTAATAAAGTCAATAATT+TGG | - | chr4_1:45170450-45170469 | Msa0549910:intron | 20.0% |
| !!! | TTGTAGTTTTAGTTTATGTT+TGG | - | chr4_1:45169716-45169735 | Msa0549910:intron | 20.0% |
| !! | ATAAAAATGCTCATAAAAAC+GGG | + | chr4_1:45169980-45169999 | None:intergenic | 20.0% |
| !! | CTTTATTACACTACTTAATT+AGG | + | chr4_1:45170441-45170460 | None:intergenic | 20.0% |
| !! | GTGTAATAAAGTCAATAATT+TGG | - | chr4_1:45170450-45170469 | Msa0549910:intron | 20.0% |
| ! | AATGAACAATTATATAGCTC+TGG | - | chr4_1:45169794-45169813 | Msa0549910:intron | 25.0% |
| ! | GTAACAAAACAAAACAATAG+AGG | + | chr4_1:45169885-45169904 | None:intergenic | 25.0% |
| ! | TAAAAATGCTCATAAAAACG+GGG | + | chr4_1:45169979-45169998 | None:intergenic | 25.0% |
| ! | TTAACAAGTTAGAAACTTTC+CGG | + | chr4_1:45170167-45170186 | None:intergenic | 25.0% |
| ! | AAGTTATGATGTGATTATCT+AGG | - | chr4_1:45170383-45170402 | Msa0549910:intron | 25.0% |
| ! | AATGAACAATTATATAGCTC+TGG | - | chr4_1:45169794-45169813 | Msa0549910:intron | 25.0% |
| ! | GTAACAAAACAAAACAATAG+AGG | + | chr4_1:45169885-45169904 | None:intergenic | 25.0% |
| ! | TAAAAATGCTCATAAAAACG+GGG | + | chr4_1:45169979-45169998 | None:intergenic | 25.0% |
| ! | TTAACAAGTTAGAAACTTTC+CGG | + | chr4_1:45170167-45170186 | None:intergenic | 25.0% |
| ! | AAGTTATGATGTGATTATCT+AGG | - | chr4_1:45170383-45170402 | Msa0549910:intron | 25.0% |
| TATTGTTGCATCAAGTTTGT+AGG | - | chr4_1:45169749-45169768 | Msa0549910:CDS | 30.0% | |
| !!! | TGTTTTGTTTTGTTACCCAT+AGG | - | chr4_1:45169889-45169908 | Msa0549910:intron | 30.0% |
| TTGAATAGGATTACCTTCAA+TGG | + | chr4_1:45169923-45169942 | None:intergenic | 30.0% | |
| ATTGAAGGTAATCCTATTCA+AGG | - | chr4_1:45169922-45169941 | Msa0549910:intron | 30.0% | |
| ! | ACTTTACACTGAATGTCTTT+TGG | - | chr4_1:45170088-45170107 | Msa0549910:intron | 30.0% |
| TAACTTAGAAAGAATGCCAA+AGG | + | chr4_1:45170369-45170388 | None:intergenic | 30.0% | |
| AGAAAGTTCAAAGAAGTTCT+AGG | - | chr4_1:45170513-45170532 | Msa0549910:intron | 30.0% | |
| GAGTAAACATAAAAAGGAAG+TGG | + | chr4_1:45170587-45170606 | None:intergenic | 30.0% | |
| ACACACAATGTTATAGTTTG+AGG | - | chr4_1:45170706-45170725 | Msa0549910:intron | 30.0% | |
| ! | AATGTTATAGTTTGAGGTGA+AGG | - | chr4_1:45170712-45170731 | Msa0549910:intron | 30.0% |
| TTTCAATATTGTTGCAGAGA+TGG | - | chr4_1:45170973-45170992 | Msa0549910:intron | 30.0% | |
| ATTAAAGAGAGAGAAAACAC+AGG | - | chr4_1:45171001-45171020 | Msa0549910:CDS | 30.0% | |
| TATTGTTGCATCAAGTTTGT+AGG | - | chr4_1:45169749-45169768 | Msa0549910:CDS | 30.0% | |
| !!! | TGTTTTGTTTTGTTACCCAT+AGG | - | chr4_1:45169889-45169908 | Msa0549910:intron | 30.0% |
| TTGAATAGGATTACCTTCAA+TGG | + | chr4_1:45169923-45169942 | None:intergenic | 30.0% | |
| ATTGAAGGTAATCCTATTCA+AGG | - | chr4_1:45169922-45169941 | Msa0549910:intron | 30.0% | |
| ! | ACTTTACACTGAATGTCTTT+TGG | - | chr4_1:45170088-45170107 | Msa0549910:intron | 30.0% |
| TAACTTAGAAAGAATGCCAA+AGG | + | chr4_1:45170369-45170388 | None:intergenic | 30.0% | |
| AGAAAGTTCAAAGAAGTTCT+AGG | - | chr4_1:45170513-45170532 | Msa0549910:intron | 30.0% | |
| GAGTAAACATAAAAAGGAAG+TGG | + | chr4_1:45170587-45170606 | None:intergenic | 30.0% | |
| ACACACAATGTTATAGTTTG+AGG | - | chr4_1:45170706-45170725 | Msa0549910:intron | 30.0% | |
| ! | AATGTTATAGTTTGAGGTGA+AGG | - | chr4_1:45170712-45170731 | Msa0549910:intron | 30.0% |
| TTTCAATATTGTTGCAGAGA+TGG | - | chr4_1:45170973-45170992 | Msa0549910:intron | 30.0% | |
| ATTAAAGAGAGAGAAAACAC+AGG | - | chr4_1:45171001-45171020 | Msa0549910:CDS | 30.0% | |
| GGCTCAAGAATAGAATTGAA+AGG | - | chr4_1:45169591-45169610 | Msa0549910:CDS | 35.0% | |
| AAAGGAAATCATCCTATCTG+TGG | - | chr4_1:45169609-45169628 | Msa0549910:CDS | 35.0% | |
| TAAAAAGATACACCTTCGCT+GGG | + | chr4_1:45169827-45169846 | None:intergenic | 35.0% | |
| ! | GTGTATCTTTTTACCCTTCA+GGG | - | chr4_1:45169834-45169853 | Msa0549910:intron | 35.0% |
| AATAGAGGCAAATGAGATGT+TGG | + | chr4_1:45169870-45169889 | None:intergenic | 35.0% | |
| ATATGCTCAATGCTATGCTA+TGG | - | chr4_1:45170117-45170136 | Msa0549910:intron | 35.0% | |
| TATGCTCAATGCTATGCTAT+GGG | - | chr4_1:45170118-45170137 | Msa0549910:intron | 35.0% | |
| GAATAATATGCTTGTCCTGT+TGG | - | chr4_1:45170194-45170213 | Msa0549910:intron | 35.0% | |
| GATATGACATGGTTCTTAAG+TGG | - | chr4_1:45170219-45170238 | Msa0549910:intron | 35.0% | |
| GGACTTAGTGTATCCTATTA+TGG | - | chr4_1:45170471-45170490 | Msa0549910:intron | 35.0% | |
| GTGCTCAAAGCAATGATATT+TGG | - | chr4_1:45170660-45170679 | Msa0549910:intron | 35.0% | |
| TGTGTGTAACAATATCACTC+AGG | + | chr4_1:45170693-45170712 | None:intergenic | 35.0% | |
| ATTTGAAAATGACACCAAGG+AGG | - | chr4_1:45170899-45170918 | Msa0549910:intron | 35.0% | |
| TTGAAAAAAAACCTGACTGC+TGG | + | chr4_1:45170959-45170978 | None:intergenic | 35.0% | |
| GGCTCAAGAATAGAATTGAA+AGG | - | chr4_1:45169591-45169610 | Msa0549910:CDS | 35.0% | |
| AAAGGAAATCATCCTATCTG+TGG | - | chr4_1:45169609-45169628 | Msa0549910:CDS | 35.0% | |
| TAAAAAGATACACCTTCGCT+GGG | + | chr4_1:45169827-45169846 | None:intergenic | 35.0% | |
| ! | GTGTATCTTTTTACCCTTCA+GGG | - | chr4_1:45169834-45169853 | Msa0549910:intron | 35.0% |
| AATAGAGGCAAATGAGATGT+TGG | + | chr4_1:45169870-45169889 | None:intergenic | 35.0% | |
| ATATGCTCAATGCTATGCTA+TGG | - | chr4_1:45170117-45170136 | Msa0549910:intron | 35.0% | |
| TATGCTCAATGCTATGCTAT+GGG | - | chr4_1:45170118-45170137 | Msa0549910:intron | 35.0% | |
| GAATAATATGCTTGTCCTGT+TGG | - | chr4_1:45170194-45170213 | Msa0549910:intron | 35.0% | |
| GATATGACATGGTTCTTAAG+TGG | - | chr4_1:45170219-45170238 | Msa0549910:intron | 35.0% | |
| GGACTTAGTGTATCCTATTA+TGG | - | chr4_1:45170471-45170490 | Msa0549910:intron | 35.0% | |
| GTGCTCAAAGCAATGATATT+TGG | - | chr4_1:45170660-45170679 | Msa0549910:intron | 35.0% | |
| TGTGTGTAACAATATCACTC+AGG | + | chr4_1:45170693-45170712 | None:intergenic | 35.0% | |
| ATTTGAAAATGACACCAAGG+AGG | - | chr4_1:45170899-45170918 | Msa0549910:intron | 35.0% | |
| TTGAAAAAAAACCTGACTGC+TGG | + | chr4_1:45170959-45170978 | None:intergenic | 35.0% | |
| TGTACAAGTATCCTATCTGC+AGG | - | chr4_1:45169641-45169660 | Msa0549910:CDS | 40.0% | |
| GCAATTTCAAATCCAGAACC+AGG | + | chr4_1:45169674-45169693 | None:intergenic | 40.0% | |
| GTAAAAAGATACACCTTCGC+TGG | + | chr4_1:45169828-45169847 | None:intergenic | 40.0% | |
| ! | GGTGTATCTTTTTACCCTTC+AGG | - | chr4_1:45169833-45169852 | Msa0549910:intron | 40.0% |
| ! | CTTTTTACCCTTCAGGGTAT+AGG | - | chr4_1:45169840-45169859 | Msa0549910:intron | 40.0% |
| TGGTTTACCTATACCCTGAA+GGG | + | chr4_1:45169850-45169869 | None:intergenic | 40.0% | |
| TTGGTTTACCTATACCCTGA+AGG | + | chr4_1:45169851-45169870 | None:intergenic | 40.0% | |
| TCAATGGATGAAGCTCCTAT+GGG | + | chr4_1:45169907-45169926 | None:intergenic | 40.0% | |
| TTCAATGGATGAAGCTCCTA+TGG | + | chr4_1:45169908-45169927 | None:intergenic | 40.0% | |
| ATAGGAGCTTCATCCATTGA+AGG | - | chr4_1:45169907-45169926 | Msa0549910:intron | 40.0% | |
| CGATGTCAGACACTGAATAT+GGG | - | chr4_1:45169945-45169964 | Msa0549910:intron | 40.0% | |
| GGGTCTATACGTTGAATTCT+TGG | - | chr4_1:45170138-45170157 | Msa0549910:intron | 40.0% | |
| ACAAGTTAGAAACTTTCCGG+TGG | + | chr4_1:45170164-45170183 | None:intergenic | 40.0% | |
| TAATATGCTTGTCCTGTTGG+TGG | - | chr4_1:45170197-45170216 | Msa0549910:intron | 40.0% | |
| GGTAAAGCTTCACTTTCCTT+TGG | - | chr4_1:45170350-45170369 | Msa0549910:intron | 40.0% | |
| ATCCTATTATGGCCAAACAG+AGG | - | chr4_1:45170482-45170501 | Msa0549910:intron | 40.0% | |
| TTCTTTGAGTAGCCTCTGTT+TGG | + | chr4_1:45170497-45170516 | None:intergenic | 40.0% | |
| ATAAGCAACAACGACCGTAA+GGG | + | chr4_1:45170542-45170561 | None:intergenic | 40.0% | |
| TTCTAGCATGCATATGTCAC+AGG | - | chr4_1:45170735-45170754 | Msa0549910:intron | 40.0% | |
| ATATGACTGCTTGAAGCTGA+AGG | + | chr4_1:45170766-45170785 | None:intergenic | 40.0% | |
| ATATCAGGAGAAGCTAGTGA+AGG | - | chr4_1:45170875-45170894 | Msa0549910:intron | 40.0% | |
| GGCATTTGAAAATGACACCA+AGG | - | chr4_1:45170896-45170915 | Msa0549910:intron | 40.0% | |
| TGGAGATACATGTGGTTGTT+GGG | + | chr4_1:45170939-45170958 | None:intergenic | 40.0% | |
| TGTACAAGTATCCTATCTGC+AGG | - | chr4_1:45169641-45169660 | Msa0549910:CDS | 40.0% | |
| GCAATTTCAAATCCAGAACC+AGG | + | chr4_1:45169674-45169693 | None:intergenic | 40.0% | |
| GTAAAAAGATACACCTTCGC+TGG | + | chr4_1:45169828-45169847 | None:intergenic | 40.0% | |
| ! | GGTGTATCTTTTTACCCTTC+AGG | - | chr4_1:45169833-45169852 | Msa0549910:intron | 40.0% |
| ! | CTTTTTACCCTTCAGGGTAT+AGG | - | chr4_1:45169840-45169859 | Msa0549910:intron | 40.0% |
| TGGTTTACCTATACCCTGAA+GGG | + | chr4_1:45169850-45169869 | None:intergenic | 40.0% | |
| TTGGTTTACCTATACCCTGA+AGG | + | chr4_1:45169851-45169870 | None:intergenic | 40.0% | |
| TCAATGGATGAAGCTCCTAT+GGG | + | chr4_1:45169907-45169926 | None:intergenic | 40.0% | |
| TTCAATGGATGAAGCTCCTA+TGG | + | chr4_1:45169908-45169927 | None:intergenic | 40.0% | |
| ATAGGAGCTTCATCCATTGA+AGG | - | chr4_1:45169907-45169926 | Msa0549910:intron | 40.0% | |
| CGATGTCAGACACTGAATAT+GGG | - | chr4_1:45169945-45169964 | Msa0549910:intron | 40.0% | |
| GGGTCTATACGTTGAATTCT+TGG | - | chr4_1:45170138-45170157 | Msa0549910:intron | 40.0% | |
| ACAAGTTAGAAACTTTCCGG+TGG | + | chr4_1:45170164-45170183 | None:intergenic | 40.0% | |
| TAATATGCTTGTCCTGTTGG+TGG | - | chr4_1:45170197-45170216 | Msa0549910:intron | 40.0% | |
| GGTAAAGCTTCACTTTCCTT+TGG | - | chr4_1:45170350-45170369 | Msa0549910:intron | 40.0% | |
| ATCCTATTATGGCCAAACAG+AGG | - | chr4_1:45170482-45170501 | Msa0549910:intron | 40.0% | |
| TTCTTTGAGTAGCCTCTGTT+TGG | + | chr4_1:45170497-45170516 | None:intergenic | 40.0% | |
| ATAAGCAACAACGACCGTAA+GGG | + | chr4_1:45170542-45170561 | None:intergenic | 40.0% | |
| TTCTAGCATGCATATGTCAC+AGG | - | chr4_1:45170735-45170754 | Msa0549910:intron | 40.0% | |
| ATATGACTGCTTGAAGCTGA+AGG | + | chr4_1:45170766-45170785 | None:intergenic | 40.0% | |
| ATATCAGGAGAAGCTAGTGA+AGG | - | chr4_1:45170875-45170894 | Msa0549910:intron | 40.0% | |
| GGCATTTGAAAATGACACCA+AGG | - | chr4_1:45170896-45170915 | Msa0549910:intron | 40.0% | |
| TGGAGATACATGTGGTTGTT+GGG | + | chr4_1:45170939-45170958 | None:intergenic | 40.0% | |
| TGTCTGACATCGCCTTGAAT+AGG | + | chr4_1:45169937-45169956 | None:intergenic | 45.0% | |
| GCGATGTCAGACACTGAATA+TGG | - | chr4_1:45169944-45169963 | Msa0549910:intron | 45.0% | |
| TGCTCATAAAAACGGGGATG+AGG | + | chr4_1:45169973-45169992 | None:intergenic | 45.0% | |
| TACGTTGAATTCTTGGCCAC+CGG | - | chr4_1:45170145-45170164 | Msa0549910:intron | 45.0% | |
| ! | TCCTGTTGGTGGATATGACA+TGG | - | chr4_1:45170208-45170227 | Msa0549910:intron | 45.0% |
| ACCATGTCATATCCACCAAC+AGG | + | chr4_1:45170212-45170231 | None:intergenic | 45.0% | |
| AGCCTCTGTTTGGCCATAAT+AGG | + | chr4_1:45170487-45170506 | None:intergenic | 45.0% | |
| !! | GAAGTTCTAGGATGCCCTTA+CGG | - | chr4_1:45170525-45170544 | Msa0549910:intron | 45.0% |
| CATAAGCAACAACGACCGTA+AGG | + | chr4_1:45170543-45170562 | None:intergenic | 45.0% | |
| TCGTGAGCAGGAAACATATC+AGG | - | chr4_1:45170860-45170879 | Msa0549910:intron | 45.0% | |
| TACATGTGGTTGTTGGGTCA+AGG | + | chr4_1:45170933-45170952 | None:intergenic | 45.0% | |
| CTGGAGATACATGTGGTTGT+TGG | + | chr4_1:45170940-45170959 | None:intergenic | 45.0% | |
| AGAGAGAGAAAACACAGGAG+AGG | - | chr4_1:45171006-45171025 | Msa0549910:CDS | 45.0% | |
| TGTCTGACATCGCCTTGAAT+AGG | + | chr4_1:45169937-45169956 | None:intergenic | 45.0% | |
| GCGATGTCAGACACTGAATA+TGG | - | chr4_1:45169944-45169963 | Msa0549910:intron | 45.0% | |
| TGCTCATAAAAACGGGGATG+AGG | + | chr4_1:45169973-45169992 | None:intergenic | 45.0% | |
| TACGTTGAATTCTTGGCCAC+CGG | - | chr4_1:45170145-45170164 | Msa0549910:intron | 45.0% | |
| ! | TCCTGTTGGTGGATATGACA+TGG | - | chr4_1:45170208-45170227 | Msa0549910:intron | 45.0% |
| ACCATGTCATATCCACCAAC+AGG | + | chr4_1:45170212-45170231 | None:intergenic | 45.0% | |
| AGCCTCTGTTTGGCCATAAT+AGG | + | chr4_1:45170487-45170506 | None:intergenic | 45.0% | |
| !! | GAAGTTCTAGGATGCCCTTA+CGG | - | chr4_1:45170525-45170544 | Msa0549910:intron | 45.0% |
| CATAAGCAACAACGACCGTA+AGG | + | chr4_1:45170543-45170562 | None:intergenic | 45.0% | |
| TCGTGAGCAGGAAACATATC+AGG | - | chr4_1:45170860-45170879 | Msa0549910:intron | 45.0% | |
| TACATGTGGTTGTTGGGTCA+AGG | + | chr4_1:45170933-45170952 | None:intergenic | 45.0% | |
| CTGGAGATACATGTGGTTGT+TGG | + | chr4_1:45170940-45170959 | None:intergenic | 45.0% | |
| AGAGAGAGAAAACACAGGAG+AGG | - | chr4_1:45171006-45171025 | Msa0549910:CDS | 45.0% | |
| CATCCTATCTGTGGAGCTAG+AGG | - | chr4_1:45169618-45169637 | Msa0549910:CDS | 50.0% | |
| ! | ACACCTCTAGCTCCACAGAT+AGG | + | chr4_1:45169624-45169643 | None:intergenic | 50.0% |
| AAAGATACACCTTCGCTGGG+AGG | + | chr4_1:45169824-45169843 | None:intergenic | 50.0% | |
| TGACTGCTTGAAGCTGAAGG+AGG | + | chr4_1:45170763-45170782 | None:intergenic | 50.0% | |
| TGCATTGTTCTCTCGTGAGC+AGG | - | chr4_1:45170848-45170867 | Msa0549910:intron | 50.0% | |
| TCAAGGAGGATCAACCTCCT+TGG | + | chr4_1:45170916-45170935 | None:intergenic | 50.0% | |
| ATGTGGTTGTTGGGTCAAGG+AGG | + | chr4_1:45170930-45170949 | None:intergenic | 50.0% | |
| CTGACTGCTGGAGATACATG+TGG | + | chr4_1:45170947-45170966 | None:intergenic | 50.0% | |
| CACATGTATCTCCAGCAGTC+AGG | - | chr4_1:45170945-45170964 | Msa0549910:intron | 50.0% | |
| GCTCGAGCGCACTAATGATT+TGG | - | chr4_1:45171034-45171053 | Msa0549910:CDS | 50.0% | |
| TTCTTGAGCCCAAGATGCTC+TGG | + | chr4_1:45169581-45169600 | None:intergenic | 50.0% | |
| CATCCTATCTGTGGAGCTAG+AGG | - | chr4_1:45169618-45169637 | Msa0549910:CDS | 50.0% | |
| ! | ACACCTCTAGCTCCACAGAT+AGG | + | chr4_1:45169624-45169643 | None:intergenic | 50.0% |
| AAAGATACACCTTCGCTGGG+AGG | + | chr4_1:45169824-45169843 | None:intergenic | 50.0% | |
| TGACTGCTTGAAGCTGAAGG+AGG | + | chr4_1:45170763-45170782 | None:intergenic | 50.0% | |
| TGCATTGTTCTCTCGTGAGC+AGG | - | chr4_1:45170848-45170867 | Msa0549910:intron | 50.0% | |
| TCAAGGAGGATCAACCTCCT+TGG | + | chr4_1:45170916-45170935 | None:intergenic | 50.0% | |
| ATGTGGTTGTTGGGTCAAGG+AGG | + | chr4_1:45170930-45170949 | None:intergenic | 50.0% | |
| CTGACTGCTGGAGATACATG+TGG | + | chr4_1:45170947-45170966 | None:intergenic | 50.0% | |
| CACATGTATCTCCAGCAGTC+AGG | - | chr4_1:45170945-45170964 | Msa0549910:intron | 50.0% | |
| GCTCGAGCGCACTAATGATT+TGG | - | chr4_1:45171034-45171053 | Msa0549910:CDS | 50.0% | |
| TCTGGAAATCCTCCCAGCGA+AGG | - | chr4_1:45169812-45169831 | Msa0549910:intron | 55.0% | |
| TCTGGAAATCCTCCCAGCGA+AGG | - | chr4_1:45169812-45169831 | Msa0549910:intron | 55.0% | |
| CAGGTCGAGCTCCTGCAGAT+AGG | + | chr4_1:45169655-45169674 | None:intergenic | 60.0% | |
| CTATCTGCAGGAGCTCGACC+TGG | - | chr4_1:45169653-45169672 | Msa0549910:intron | 60.0% | |
| CAGGTCGAGCTCCTGCAGAT+AGG | + | chr4_1:45169655-45169674 | None:intergenic | 60.0% | |
| CTATCTGCAGGAGCTCGACC+TGG | - | chr4_1:45169653-45169672 | Msa0549910:intron | 60.0% | |
| GCAGGAGCTCGACCTGGTTC+TGG | - | chr4_1:45169659-45169678 | Msa0549910:intron | 65.0% | |
| GCAGGAGCTCGACCTGGTTC+TGG | - | chr4_1:45169659-45169678 | Msa0549910:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 45169579 | 45171076 | 45169579 | ID=Msa0549910;Name=Msa0549910 |
| chr4_1 | mRNA | 45169579 | 45171076 | 45169579 | ID=Msa0549910-mRNA-1;Parent=Msa0549910;Name=Msa0549910-mRNA-1;_AED=0.44;_eAED=0.67;_QI=0|0|0|1|0.5|0.33|3|0|78 |
| chr4_1 | exon | 45170981 | 45171076 | 45170981 | ID=Msa0549910-mRNA-1:exon:11887;Parent=Msa0549910-mRNA-1 |
| chr4_1 | exon | 45169735 | 45169785 | 45169735 | ID=Msa0549910-mRNA-1:exon:11886;Parent=Msa0549910-mRNA-1 |
| chr4_1 | exon | 45169579 | 45169665 | 45169579 | ID=Msa0549910-mRNA-1:exon:11885;Parent=Msa0549910-mRNA-1 |
| chr4_1 | CDS | 45170981 | 45171076 | 45170981 | ID=Msa0549910-mRNA-1:cds;Parent=Msa0549910-mRNA-1 |
| chr4_1 | CDS | 45169735 | 45169785 | 45169735 | ID=Msa0549910-mRNA-1:cds;Parent=Msa0549910-mRNA-1 |
| chr4_1 | CDS | 45169579 | 45169665 | 45169579 | ID=Msa0549910-mRNA-1:cds;Parent=Msa0549910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
