Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0940050 | A0A072UHB3 | 94.589 | 462 | 1 | 2 | 1 | 456 | 1 | 444 | 0.0 | 883 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035320 | Msa0940050 | 0.820882 | 5.423230e-53 | -8.615850e-47 |
| Msa0658950 | Msa0940050 | 0.814678 | 1.363356e-51 | -8.615850e-47 |
| Msa0685620 | Msa0940050 | 0.815388 | 9.484591e-52 | -8.615850e-47 |
| Msa0427030 | Msa0940050 | 0.813209 | 2.873369e-51 | -8.615850e-47 |
| Msa0467310 | Msa0940050 | 0.817866 | 2.639803e-52 | -8.615850e-47 |
| Msa0338960 | Msa0940050 | 0.812024 | 5.220993e-51 | -8.615850e-47 |
| Msa0554670 | Msa0940050 | 0.817292 | 3.557023e-52 | -8.615850e-47 |
| Msa0573110 | Msa0940050 | 0.812719 | 3.680482e-51 | -8.615850e-47 |
| Msa0940050 | Msa1027780 | 0.837365 | 5.425949e-57 | -8.615850e-47 |
| Msa0940050 | Msa1237720 | 0.831341 | 1.763750e-55 | -8.615850e-47 |
| Msa0940050 | Msa1317920 | 0.802156 | 6.411552e-49 | -8.615850e-47 |
| Msa0940050 | Msa1353550 | 0.810335 | 1.213084e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0940050 | MtrunA17_Chr6g0455891 | 94.589 | 462 | 1 | 2 | 1 | 456 | 1 | 444 | 0.0 | 883 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0940050 | AT5G15680.1 | 86.364 | 462 | 39 | 2 | 1 | 456 | 1 | 444 | 0.0 | 789 |
Find 124 sgRNAs with CRISPR-Local
Find 476 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTAATCCCATATTCGATTT+TGG | 0.103754 | 6_3:+12278754 | None:intergenic |
| TTTGGTTTGGATATATTTAA+AGG | 0.239675 | 6_3:-12278501 | None:intergenic |
| ATCAGGCCCAAAATCGAATA+TGG | 0.241788 | 6_3:-12278761 | Msa0940050:CDS |
| GAATCACCGTTTCATGGCTT+TGG | 0.269271 | 6_3:-12278832 | Msa0940050:CDS |
| TTGCCCACAAGTCAGTATTT+TGG | 0.276144 | 6_3:-12278519 | Msa0940050:CDS |
| TTATGAGGAGCACGGTTTAA+AGG | 0.280127 | 6_3:+12279386 | None:intergenic |
| TCCGGCCTATGAACAAGTTT+TGG | 0.291436 | 6_3:-12284956 | Msa0940050:CDS |
| ACCAATAACCTTTGCTTCAC+TGG | 0.293486 | 6_3:+12278569 | None:intergenic |
| AAAGGCCAGTGGCCACCTTC+TGG | 0.300086 | 6_3:-12279290 | Msa0940050:CDS |
| TGTCCACAAGAGGGGCTTAC+TGG | 0.307250 | 6_3:-12282220 | Msa0940050:intron |
| CTCAGCTTGCATCCGATTTG+TGG | 0.309545 | 6_3:-12282248 | Msa0940050:CDS |
| AAGAAGGTCTGATGAGGGTT+TGG | 0.314067 | 6_3:+12285356 | None:intergenic |
| AGCAGCTCTACAAACTTCTT+AGG | 0.315592 | 6_3:-12279009 | Msa0940050:CDS |
| ACTTAACAGAACAATCAAAA+TGG | 0.324801 | 6_3:+12279768 | None:intergenic |
| CCCAGTGAAGCAAAGGTTAT+TGG | 0.325792 | 6_3:-12278570 | Msa0940050:CDS |
| GAAGAAGAGGAGGATCTAAT+TGG | 0.328285 | 6_3:+12285395 | None:intergenic |
| TAGGGGCTTTATCCCGTATC+AGG | 0.331224 | 6_3:-12281034 | Msa0940050:intron |
| TTGTTGCAGGGTTGTTAGTC+AGG | 0.342000 | 6_3:-12281117 | Msa0940050:intron |
| GAATGCATCTGCTTCCTTTG+TGG | 0.343779 | 6_3:-12279420 | Msa0940050:CDS |
| GATGCATCATTTGCACCCTT+TGG | 0.344896 | 6_3:+12282472 | None:intergenic |
| GAGTGTCCACGCAGCTAATC+AGG | 0.356993 | 6_3:-12278778 | Msa0940050:CDS |
| GTAACTCTTCTTCTGTGTCT+TGG | 0.376845 | 6_3:-12279073 | Msa0940050:CDS |
| TACAACTTCTAGCAGTTCTA+AGG | 0.380872 | 6_3:-12278716 | Msa0940050:CDS |
| TTATACATACCCCAAGCTTC+AGG | 0.391104 | 6_3:+12279539 | None:intergenic |
| TATGAGGAGCACGGTTTAAA+GGG | 0.392445 | 6_3:+12279387 | None:intergenic |
| GCATGAGTTGAACTCTTATA+CGG | 0.395448 | 6_3:+12279228 | None:intergenic |
| GGATGCGCTACCTGAAGCTT+GGG | 0.401150 | 6_3:-12279549 | Msa0940050:CDS |
| AGAAGGTCTGATGAGGGTTT+GGG | 0.403477 | 6_3:+12285357 | None:intergenic |
| TTAGCAATTCTAGTATCATA+TGG | 0.405756 | 6_3:+12278604 | None:intergenic |
| TTCTAGTATCATATGGTTCA+TGG | 0.408303 | 6_3:+12278611 | None:intergenic |
| TAGAGCCTGCACTTACTTTG+TGG | 0.423803 | 6_3:-12279265 | Msa0940050:CDS |
| TGAATCCAAAACTTGTTCAT+AGG | 0.437933 | 6_3:+12284951 | None:intergenic |
| CCAATAACCTTTGCTTCACT+GGG | 0.450585 | 6_3:+12278570 | None:intergenic |
| GGATAAGAATCACCGTTTCA+TGG | 0.456038 | 6_3:-12278838 | Msa0940050:CDS |
| AAACCAAAATACTGACTTGT+GGG | 0.457474 | 6_3:+12278516 | None:intergenic |
| AAGTTATGGTGGAATATTTG+AGG | 0.465583 | 6_3:+12279046 | None:intergenic |
| AAAGCTTCAAGAAGTGGAAC+AGG | 0.467128 | 6_3:+12284904 | None:intergenic |
| TGGAATTGGAATTGAAATGA+AGG | 0.468753 | 6_3:-12285205 | Msa0940050:exon |
| ATTCAACAAGTTTATCATGT+TGG | 0.473748 | 6_3:+12278670 | None:intergenic |
| TAAACCGTGCTCCTCATAAA+CGG | 0.477104 | 6_3:-12279382 | Msa0940050:CDS |
| TATTGAAACCGCTCAAGCTC+AGG | 0.479630 | 6_3:-12285115 | Msa0940050:intron |
| GAAACACTTAGCATCATTAA+CGG | 0.480740 | 6_3:-12279571 | Msa0940050:CDS |
| TGCATCTACGTTCCAAAGAA+AGG | 0.489264 | 6_3:-12282455 | Msa0940050:intron |
| TCAGGCCCAAAATCGAATAT+GGG | 0.490648 | 6_3:-12278760 | Msa0940050:CDS |
| AGGGTTTGGGAGTTGAAGAG+TGG | 0.491345 | 6_3:+12285370 | None:intergenic |
| GCAGCTCTACAAACTTCTTA+GGG | 0.493027 | 6_3:-12279008 | Msa0940050:intron |
| GGGATGCGCTACCTGAAGCT+TGG | 0.493536 | 6_3:-12279550 | Msa0940050:CDS |
| TACGACGTCGTGCGAGAGGA+AGG | 0.494247 | 6_3:+12285136 | None:intergenic |
| AAGAGTGGAAGAAGAAGAGG+AGG | 0.494685 | 6_3:+12285385 | None:intergenic |
| GTGGACAACATTCCACAAAT+CGG | 0.496108 | 6_3:+12282236 | None:intergenic |
| TTGAAGAGTGGAAGAAGAAG+AGG | 0.499326 | 6_3:+12285382 | None:intergenic |
| TGAAATGAAATTGAAGAAGA+AGG | 0.506991 | 6_3:+12285340 | None:intergenic |
| TTGATTGTTCTGTTAAGTCA+TGG | 0.511408 | 6_3:-12279763 | Msa0940050:CDS |
| TGTTTCACTTCTAGCAGCAC+TGG | 0.513873 | 6_3:+12279588 | None:intergenic |
| CTCAACAAAGCTTCAAGAAG+TGG | 0.516197 | 6_3:+12284898 | None:intergenic |
| TCCAAAACTTGTTCATAGGC+CGG | 0.518591 | 6_3:+12284955 | None:intergenic |
| TATGGTTCATGGTAAAATCA+AGG | 0.520426 | 6_3:+12278622 | None:intergenic |
| GACAATCCAAAGCCATGAAA+CGG | 0.520736 | 6_3:+12278826 | None:intergenic |
| CTACACCAGAAGGTGGCCAC+TGG | 0.522937 | 6_3:+12279285 | None:intergenic |
| GTTTCCAATCATACCTGATA+CGG | 0.524927 | 6_3:+12281021 | None:intergenic |
| TAAGAGTTCAACTCATGCAT+TGG | 0.525784 | 6_3:-12279223 | Msa0940050:CDS |
| TCCCTCACTTGTTGATCTGA+GGG | 0.526094 | 6_3:-12281087 | Msa0940050:CDS |
| AAACACTTAGCATCATTAAC+GGG | 0.526691 | 6_3:-12279570 | Msa0940050:CDS |
| TGAAGAAGAAGGTCTGATGA+GGG | 0.530162 | 6_3:+12285351 | None:intergenic |
| GCTGCAGAGAAGCTATGGTC+TGG | 0.530399 | 6_3:-12282096 | Msa0940050:intron |
| ATTGGCTTATAAATGCTGAC+AGG | 0.530824 | 6_3:-12282053 | Msa0940050:intron |
| ATTGGAATTGAAATGAAGGC+AGG | 0.532263 | 6_3:-12285201 | Msa0940050:exon |
| AGATAGCCCCAGTGAAGCAA+AGG | 0.533260 | 6_3:-12278577 | Msa0940050:CDS |
| CCATGTGAGGACTTAAGTTA+TGG | 0.536125 | 6_3:+12279032 | None:intergenic |
| ATCCCTCACTTGTTGATCTG+AGG | 0.542849 | 6_3:-12281088 | Msa0940050:CDS |
| TCTATGCTGCAGAGAAGCTA+TGG | 0.545903 | 6_3:-12282101 | Msa0940050:intron |
| TGTCCAGGTTGGGTATCCGT+TGG | 0.547987 | 6_3:-12279095 | Msa0940050:intron |
| TGTTCATAGGCCGGATCAGA+TGG | 0.550275 | 6_3:+12284964 | None:intergenic |
| AGTTCAACTCATGCATTGGA+TGG | 0.553711 | 6_3:-12279219 | Msa0940050:CDS |
| CTTCTAGCAGTTCTAAGGAA+AGG | 0.558348 | 6_3:-12278711 | Msa0940050:CDS |
| CCTCACTTGTTGATCTGAGG+GGG | 0.563440 | 6_3:-12281085 | Msa0940050:CDS |
| CCTCTTGCAGATGGTGGGAA+AGG | 0.564330 | 6_3:-12279308 | Msa0940050:CDS |
| CTAGCACCTCTTGCAGATGG+TGG | 0.565162 | 6_3:-12279314 | Msa0940050:CDS |
| ATTCACTTGCTATGGTTGCA+CGG | 0.568614 | 6_3:-12284933 | Msa0940050:CDS |
| CTATTGTAGTGAATCTCCAA+AGG | 0.571346 | 6_3:-12282488 | Msa0940050:intron |
| CCTTTCCCACCATCTGCAAG+AGG | 0.571626 | 6_3:+12279308 | None:intergenic |
| TCAATACGACGTCGTGCGAG+AGG | 0.573244 | 6_3:+12285132 | None:intergenic |
| TTTCCAATCATACCTGATAC+GGG | 0.575262 | 6_3:+12281022 | None:intergenic |
| TCATACCACAAAGTAAGTGC+AGG | 0.578184 | 6_3:+12279260 | None:intergenic |
| GTGGAATGTTGTCCACAAGA+GGG | 0.578595 | 6_3:-12282229 | Msa0940050:CDS |
| AAGGAAAGGATTGCTTACTC+AGG | 0.579214 | 6_3:-12278697 | Msa0940050:CDS |
| ATACCTGCGACCATCTGATC+CGG | 0.580554 | 6_3:-12284974 | Msa0940050:CDS |
| TTGAAGAAGAAGGTCTGATG+AGG | 0.581075 | 6_3:+12285350 | None:intergenic |
| CCATAACTTAAGTCCTCACA+TGG | 0.582037 | 6_3:-12279032 | Msa0940050:CDS |
| TGGAATGTTGTCCACAAGAG+GGG | 0.584695 | 6_3:-12282228 | Msa0940050:CDS |
| CCCCTCAGATCAACAAGTGA+GGG | 0.586613 | 6_3:+12281086 | None:intergenic |
| ATCCTAGCACCTCTTGCAGA+TGG | 0.589020 | 6_3:-12279317 | Msa0940050:CDS |
| CCTTCTCAGGTTAAAACTGA+GGG | 0.591801 | 6_3:-12279449 | Msa0940050:intron |
| GTTGTAGTGTTACACTGTCT+AGG | 0.592151 | 6_3:+12278733 | None:intergenic |
| TAGCACCTCTTGCAGATGGT+GGG | 0.592927 | 6_3:-12279313 | Msa0940050:CDS |
| TATTGTAGTGAATCTCCAAA+GGG | 0.593010 | 6_3:-12282487 | Msa0940050:intron |
| ACAACATATTGCATAGAGCA+TGG | 0.593522 | 6_3:+12279345 | None:intergenic |
| CAAACCAAAATACTGACTTG+TGG | 0.595073 | 6_3:+12278515 | None:intergenic |
| TCTGTTAAGTCATGGCCACA+AGG | 0.595421 | 6_3:-12279755 | Msa0940050:CDS |
| GTAACATACCTGAGCTTGAG+CGG | 0.596129 | 6_3:+12285107 | None:intergenic |
| CACCATCTGCAAGAGGTGCT+AGG | 0.599791 | 6_3:+12279315 | None:intergenic |
| TGTGGAATGTTGTCCACAAG+AGG | 0.600469 | 6_3:-12282230 | Msa0940050:CDS |
| CCCTCACTTGTTGATCTGAG+GGG | 0.600631 | 6_3:-12281086 | Msa0940050:CDS |
| ATCAAAATGGACAGAAGCAG+AGG | 0.603115 | 6_3:+12279781 | None:intergenic |
| TGTGAGGACTTAAGTTATGG+TGG | 0.603402 | 6_3:+12279035 | None:intergenic |
| TTGGAATTGAAATGAAGGCA+GGG | 0.612573 | 6_3:-12285200 | Msa0940050:exon |
| AGAGAAGCTATGGTCTGGAC+TGG | 0.613126 | 6_3:-12282091 | Msa0940050:CDS |
| ACTTTGTGGTATGAAGCTGT+TGG | 0.615178 | 6_3:-12279251 | Msa0940050:CDS |
| GCCTCAACTTCATACCCTTG+TGG | 0.628821 | 6_3:+12279740 | None:intergenic |
| CAGATGGTGGGAAAGGCCAG+TGG | 0.632256 | 6_3:-12279301 | Msa0940050:CDS |
| TCCTTCTCAGGTTAAAACTG+AGG | 0.633458 | 6_3:-12279450 | Msa0940050:intron |
| TTTGGGCCTGATTAGCTGCG+TGG | 0.634506 | 6_3:+12278772 | None:intergenic |
| GTGTGGAATTCAGCTTGCCG+TGG | 0.635970 | 6_3:-12282284 | Msa0940050:intron |
| AGTGCAGGCTCTACACCAGA+AGG | 0.637043 | 6_3:+12279275 | None:intergenic |
| TCAAGTAAAACCTTAAAACT+CGG | 0.643062 | 6_3:+12278799 | None:intergenic |
| TTGTAGAGCTGCTCCATGTG+AGG | 0.643645 | 6_3:+12279019 | None:intergenic |
| GGTTTAGTTCTGTTACTGAG+CGG | 0.656519 | 6_3:-12279645 | Msa0940050:CDS |
| AAACCAGTAAGCCCCTCTTG+TGG | 0.657287 | 6_3:+12282217 | None:intergenic |
| CACAGAAGAAGAGTTACCAA+CGG | 0.665674 | 6_3:+12279079 | None:intergenic |
| TCTCAGGTTAAAACTGAGGG+AGG | 0.679544 | 6_3:-12279446 | Msa0940050:intron |
| GCAGGCTCTACACCAGAAGG+TGG | 0.680386 | 6_3:+12279278 | None:intergenic |
| CTGTTAAGTCATGGCCACAA+GGG | 0.684402 | 6_3:-12279754 | Msa0940050:intron |
| GATGCGCTACCTGAAGCTTG+GGG | 0.700483 | 6_3:-12279548 | Msa0940050:intron |
| CAATAACCTTTGCTTCACTG+GGG | 0.750675 | 6_3:+12278571 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATTTTGTTAATCTAATT+AGG | - | chr6_3:12279177-12279196 | Msa0940050:intron | 10.0% |
| !!! | ATATTTTGTTAATCTAATTA+GGG | - | chr6_3:12279178-12279197 | Msa0940050:intron | 10.0% |
| !! | AACATAAAAATATCATAATA+TGG | + | chr6_3:12280608-12280627 | None:intergenic | 10.0% |
| !! | ATTTAAATTGAAAAAGTTAT+TGG | - | chr6_3:12282653-12282672 | Msa0940050:intron | 10.0% |
| !!! | GTTTTATAATTTATCATTAA+TGG | - | chr6_3:12283167-12283186 | Msa0940050:intron | 10.0% |
| !! | AATTAAAAATAAATCGAATG+AGG | - | chr6_3:12278649-12278668 | Msa0940050:CDS | 15.0% |
| !!! | ATAAAGTTTTTTGATTGAAT+TGG | - | chr6_3:12278686-12278705 | Msa0940050:CDS | 15.0% |
| !! | ATTGATTATTATTATTGTTG+CGG | - | chr6_3:12278895-12278914 | Msa0940050:intron | 15.0% |
| !! | AATTATTATAGTAGAAAAGA+TGG | - | chr6_3:12279421-12279440 | Msa0940050:CDS | 15.0% |
| !!! | AACATATTATGATTTTGTAT+TGG | - | chr6_3:12279815-12279834 | Msa0940050:intron | 15.0% |
| !!! | ACATATTATGATTTTGTATT+GGG | - | chr6_3:12279816-12279835 | Msa0940050:intron | 15.0% |
| !!! | CTTATTTTATGACATATATA+CGG | - | chr6_3:12280084-12280103 | Msa0940050:intron | 15.0% |
| !! | AGCTTAAAAATATCATAATA+TGG | + | chr6_3:12280452-12280471 | None:intergenic | 15.0% |
| !! | TATTATAGAAATAGCTTAAT+TGG | - | chr6_3:12281021-12281040 | Msa0940050:intron | 15.0% |
| !! | AAATGTTAATGTAGATAAAA+GGG | + | chr6_3:12281497-12281516 | None:intergenic | 15.0% |
| !! | ACCAAAATTAGAAAATTTAT+AGG | + | chr6_3:12281554-12281573 | None:intergenic | 15.0% |
| !! | AAATATGATATCATAAATCT+TGG | + | chr6_3:12281605-12281624 | None:intergenic | 15.0% |
| !! | AAATCTAGTATTAAAAATTG+CGG | + | chr6_3:12282995-12283014 | None:intergenic | 15.0% |
| !!! | ATTAAATTTTAAAACTGAAG+AGG | - | chr6_3:12284105-12284124 | Msa0940050:intron | 15.0% |
| !!! | TTTTTTGATTGAATTGGAAT+TGG | - | chr6_3:12278692-12278711 | Msa0940050:CDS | 20.0% |
| !! | TTGATTATTATTATTGTTGC+GGG | - | chr6_3:12278896-12278915 | Msa0940050:intron | 20.0% |
| !!! | AGTTACATTTGTTAGAATTT+AGG | - | chr6_3:12279334-12279353 | Msa0940050:CDS | 20.0% |
| !! | TAATGAGTTTGATCAAAATA+TGG | - | chr6_3:12279578-12279597 | Msa0940050:CDS | 20.0% |
| !! | TAATATACCAATAAAGCTAA+CGG | + | chr6_3:12280005-12280024 | None:intergenic | 20.0% |
| !!! | TAGCTTTATTGGTATATTAA+AGG | - | chr6_3:12280006-12280025 | Msa0940050:intron | 20.0% |
| !!! | AGCTTTATTGGTATATTAAA+GGG | - | chr6_3:12280007-12280026 | Msa0940050:intron | 20.0% |
| !! | CGTATATATGTCATAAAATA+AGG | + | chr6_3:12280086-12280105 | None:intergenic | 20.0% |
| !! | TTTGTTTATGACATCTATAA+TGG | - | chr6_3:12280553-12280572 | Msa0940050:intron | 20.0% |
| !!! | AGCTTATTTACATCATATTT+TGG | - | chr6_3:12280685-12280704 | Msa0940050:intron | 20.0% |
| !! | GGTTTATTTACATCATATTT+AGG | - | chr6_3:12280711-12280730 | Msa0940050:intron | 20.0% |
| !! | GAATTTGGTAAAAAAAATTG+AGG | - | chr6_3:12280911-12280930 | Msa0940050:intron | 20.0% |
| !!! | TGTTTTCATAAGTGAATAAA+AGG | + | chr6_3:12280959-12280978 | None:intergenic | 20.0% |
| !!! | ATAGTTTATGTTTTGAATCT+GGG | - | chr6_3:12281343-12281362 | Msa0940050:intron | 20.0% |
| !! | AAAAATATGTAACCTTTCTT+TGG | + | chr6_3:12281471-12281490 | None:intergenic | 20.0% |
| !! | CAAATGTTAATGTAGATAAA+AGG | + | chr6_3:12281498-12281517 | None:intergenic | 20.0% |
| !!! | GCCTATAAATTTTCTAATTT+TGG | - | chr6_3:12281550-12281569 | Msa0940050:intron | 20.0% |
| !! | AGAACAAATAACGATTATAA+GGG | + | chr6_3:12281793-12281812 | None:intergenic | 20.0% |
| !! | TAGAACAAATAACGATTATA+AGG | + | chr6_3:12281794-12281813 | None:intergenic | 20.0% |
| !!! | TGGAAAATTTTGTTTTTGAT+TGG | - | chr6_3:12281840-12281859 | Msa0940050:intron | 20.0% |
| !! | TCAGACATATAAAAATCAAA+GGG | + | chr6_3:12281972-12281991 | None:intergenic | 20.0% |
| !! | TTCAGACATATAAAAATCAA+AGG | + | chr6_3:12281973-12281992 | None:intergenic | 20.0% |
| !! | AATCTGAATAATATAGCATA+GGG | - | chr6_3:12281991-12282010 | Msa0940050:intron | 20.0% |
| !!! | AGTTCAGATTTTGATATATA+AGG | - | chr6_3:12282052-12282071 | Msa0940050:intron | 20.0% |
| !!! | AGATTTTGATATATAAGGTT+AGG | - | chr6_3:12282057-12282076 | Msa0940050:CDS | 20.0% |
| !! | TAAATAGAAGAAACAATTAG+AGG | - | chr6_3:12282203-12282222 | Msa0940050:intron | 20.0% |
| !! | AAATAGAAGAAACAATTAGA+GGG | - | chr6_3:12282204-12282223 | Msa0940050:intron | 20.0% |
| !! | TATAGAAGCTCTTAAAATTT+GGG | + | chr6_3:12282621-12282640 | None:intergenic | 20.0% |
| !! | TTATAGAAGCTCTTAAAATT+TGG | + | chr6_3:12282622-12282641 | None:intergenic | 20.0% |
| !!! | GATTCATGATAAATTTTCAT+TGG | - | chr6_3:12282716-12282735 | Msa0940050:intron | 20.0% |
| !! | ATTTCGTATAAGAAAGAATA+AGG | + | chr6_3:12282751-12282770 | None:intergenic | 20.0% |
| !!! | TTCTTTCTTATACGAAATTT+TGG | - | chr6_3:12282753-12282772 | Msa0940050:intron | 20.0% |
| !!! | TTTTTAACATTTTTAAGGGT+AGG | - | chr6_3:12283094-12283113 | Msa0940050:intron | 20.0% |
| !! | TACACAATTCAATTATTTGT+AGG | - | chr6_3:12283872-12283891 | Msa0940050:intron | 20.0% |
| !! | ATTCATATATGTATCAGTAT+GGG | + | chr6_3:12284005-12284024 | None:intergenic | 20.0% |
| !! | TATGTAAAATAACAAAGCTT+CGG | + | chr6_3:12284057-12284076 | None:intergenic | 20.0% |
| !! | TAAACCTACAAATATAAGAT+TGG | + | chr6_3:12284252-12284271 | None:intergenic | 20.0% |
| !! | TTACATTACATTAAATGTTG+TGG | - | chr6_3:12284398-12284417 | Msa0940050:intron | 20.0% |
| !! | TATACAATTACAAAACAAAG+CGG | + | chr6_3:12285025-12285044 | None:intergenic | 20.0% |
| ! | TGAAATGAAATTGAAGAAGA+AGG | + | chr6_3:12278574-12278593 | None:intergenic | 25.0% |
| ! | TGTATTGTATTGTGTGTATT+AGG | + | chr6_3:12279315-12279334 | None:intergenic | 25.0% |
| ! | CTAACTCAATATTACAAAAC+CGG | - | chr6_3:12279363-12279382 | Msa0940050:CDS | 25.0% |
| ! | TATTATAGTAGAAAAGATGG+TGG | - | chr6_3:12279424-12279443 | Msa0940050:CDS | 25.0% |
| ! | AGGTAGAAAAACTAACTATT+AGG | - | chr6_3:12279541-12279560 | Msa0940050:intron | 25.0% |
| ! | CATTTATAAGCTTATGTTCA+GGG | - | chr6_3:12279885-12279904 | Msa0940050:intron | 25.0% |
| ! | AAATTGAAGTGATTTCACAT+TGG | + | chr6_3:12279921-12279940 | None:intergenic | 25.0% |
| ! | ATACATTAAATACAACACCA+CGG | + | chr6_3:12279958-12279977 | None:intergenic | 25.0% |
| ! | TATATACGGATTTAAGTGTT+TGG | - | chr6_3:12280098-12280117 | Msa0940050:intron | 25.0% |
| ! | ATATACGGATTTAAGTGTTT+GGG | - | chr6_3:12280099-12280118 | Msa0940050:intron | 25.0% |
| !!! | TTATTGAAAGAGCATTGTAT+AGG | - | chr6_3:12280129-12280148 | Msa0940050:intron | 25.0% |
| !!! | TATTGAAAGAGCATTGTATA+GGG | - | chr6_3:12280130-12280149 | Msa0940050:intron | 25.0% |
| !!! | ATTCCTTTTTGTTGATTGTT+AGG | - | chr6_3:12280281-12280300 | Msa0940050:intron | 25.0% |
| ! | ATTCCTAACAATCAACAAAA+AGG | + | chr6_3:12280287-12280306 | None:intergenic | 25.0% |
| !! | TTTGTTGATTGTTAGGAATT+TGG | - | chr6_3:12280288-12280307 | Msa0940050:intron | 25.0% |
| ! | GAGAAAGATATATCACAATA+CGG | - | chr6_3:12280379-12280398 | Msa0940050:intron | 25.0% |
| ! | TAAACAAAGCCTAAATATGA+TGG | + | chr6_3:12280541-12280560 | None:intergenic | 25.0% |
| !!! | ATTTACATCATATTTTGGCT+TGG | - | chr6_3:12280690-12280709 | Msa0940050:intron | 25.0% |
| !!! | TACGAAAGCAACTTTTTTTA+CGG | - | chr6_3:12280842-12280861 | Msa0940050:intron | 25.0% |
| ! | TACATTTCCTCAATGATAAA+AGG | - | chr6_3:12280874-12280893 | Msa0940050:intron | 25.0% |
| !! | ATAAAAGGTGCAATATATGT+TGG | - | chr6_3:12280889-12280908 | Msa0940050:intron | 25.0% |
| ! | TTTCATAAGTGAATAAAAGG+TGG | + | chr6_3:12280956-12280975 | None:intergenic | 25.0% |
| ! | CTATAATAAAAAAGTGAGTG+TGG | + | chr6_3:12281009-12281028 | None:intergenic | 25.0% |
| ! | AAATAGCTTAATTGGCATAT+AGG | - | chr6_3:12281029-12281048 | Msa0940050:intron | 25.0% |
| ! | AATAGCTTAATTGGCATATA+GGG | - | chr6_3:12281030-12281049 | Msa0940050:intron | 25.0% |
| ! | ATAAGCACTTCAGTTTATTT+GGG | + | chr6_3:12281193-12281212 | None:intergenic | 25.0% |
| ! | CAGATTCAAAACATAAACTA+TGG | + | chr6_3:12281344-12281363 | None:intergenic | 25.0% |
| !!! | CATAGTTTATGTTTTGAATC+TGG | - | chr6_3:12281342-12281361 | Msa0940050:intron | 25.0% |
| ! | TATGATATCATATTTGTGTG+TGG | - | chr6_3:12281610-12281629 | Msa0940050:intron | 25.0% |
| ! | GAACAAATAACGATTATAAG+GGG | + | chr6_3:12281792-12281811 | None:intergenic | 25.0% |
| ! | GAATCTGAATAATATAGCAT+AGG | - | chr6_3:12281990-12282009 | Msa0940050:intron | 25.0% |
| ! | TCAAAATCTGAACTGTAAAA+AGG | + | chr6_3:12282046-12282065 | None:intergenic | 25.0% |
| ! | TAGAGAATAAGTTAAGTTAG+AGG | - | chr6_3:12282168-12282187 | Msa0940050:intron | 25.0% |
| ! | AGAGAATAAGTTAAGTTAGA+GGG | - | chr6_3:12282169-12282188 | Msa0940050:intron | 25.0% |
| ! | CTTTGTGAATAAAAATCCTT+GGG | - | chr6_3:12282269-12282288 | Msa0940050:CDS | 25.0% |
| ! | TCAAAAACTAAGCAAAAGAT+GGG | + | chr6_3:12282306-12282325 | None:intergenic | 25.0% |
| ! | TTCAAAAACTAAGCAAAAGA+TGG | + | chr6_3:12282307-12282326 | None:intergenic | 25.0% |
| !! | AGATTAGATCCCAAATTTTA+AGG | - | chr6_3:12282451-12282470 | Msa0940050:intron | 25.0% |
| ! | TGCATTCATAATTGGTATTA+AGG | + | chr6_3:12283282-12283301 | None:intergenic | 25.0% |
| ! | ACCAATTATGAATGCAAAAA+TGG | - | chr6_3:12283286-12283305 | Msa0940050:intron | 25.0% |
| !!! | ACCATTTTTGCATTCATAAT+TGG | + | chr6_3:12283290-12283309 | None:intergenic | 25.0% |
| ! | TATAGTAGAAAGAACTTTGA+TGG | - | chr6_3:12283387-12283406 | Msa0940050:intron | 25.0% |
| !!! | TGTGTTTTTGAGGAATATAA+GGG | - | chr6_3:12283428-12283447 | Msa0940050:intron | 25.0% |
| ! | GTTTACTTAAACTTTCAGTA+AGG | - | chr6_3:12283849-12283868 | Msa0940050:intron | 25.0% |
| ! | TTAACCAACATAACAGAATA+TGG | - | chr6_3:12283934-12283953 | Msa0940050:intron | 25.0% |
| ! | GGTATATTTATGTGATTATC+CGG | + | chr6_3:12283982-12284001 | None:intergenic | 25.0% |
| ! | TTCATATATGTATCAGTATG+GGG | + | chr6_3:12284004-12284023 | None:intergenic | 25.0% |
| ! | CATTCATATATGTATCAGTA+TGG | + | chr6_3:12284006-12284025 | None:intergenic | 25.0% |
| ! | ACTTAACAGAACAATCAAAA+TGG | + | chr6_3:12284146-12284165 | None:intergenic | 25.0% |
| ! | CATTCCAATCTTATATTTGT+AGG | - | chr6_3:12284245-12284264 | Msa0940050:intron | 25.0% |
| ! | TTATCATACTTGACATTAGT+AGG | + | chr6_3:12284778-12284797 | None:intergenic | 25.0% |
| ! | AAGTTTAGATTCATTTCACA+TGG | - | chr6_3:12284927-12284946 | Msa0940050:CDS | 25.0% |
| ! | TCAAGTAAAACCTTAAAACT+CGG | + | chr6_3:12285115-12285134 | None:intergenic | 25.0% |
| ! | ATTCAACAAGTTTATCATGT+TGG | + | chr6_3:12285244-12285263 | None:intergenic | 25.0% |
| ! | TTAGCAATTCTAGTATCATA+TGG | + | chr6_3:12285310-12285329 | None:intergenic | 25.0% |
| TGGAATTGGAATTGAAATGA+AGG | - | chr6_3:12278706-12278725 | Msa0940050:CDS | 30.0% | |
| ! | TGAATCCAAAACTTGTTCAT+AGG | + | chr6_3:12278963-12278982 | None:intergenic | 30.0% |
| GACAATTAAATAAACGACGA+AGG | + | chr6_3:12279071-12279090 | None:intergenic | 30.0% | |
| TTATTGACACTTCTGATTGA+AGG | - | chr6_3:12279247-12279266 | Msa0940050:CDS | 30.0% | |
| !! | TAGAAAAGATGGTGGAAAAT+AGG | - | chr6_3:12279432-12279451 | Msa0940050:CDS | 30.0% |
| AAAATAGGCTTAAGTGGTTT+GGG | - | chr6_3:12279447-12279466 | Msa0940050:intron | 30.0% | |
| ! | GACGTGTAGATTTTGTAATA+AGG | - | chr6_3:12279483-12279502 | Msa0940050:intron | 30.0% |
| AATAAGGAGAGTAGATTAGA+TGG | - | chr6_3:12279499-12279518 | Msa0940050:intron | 30.0% | |
| TCGTAATTTGATCTATGTAG+TGG | - | chr6_3:12279620-12279639 | Msa0940050:CDS | 30.0% | |
| GAACATAAGCTTATAAATGG+AGG | + | chr6_3:12279884-12279903 | None:intergenic | 30.0% | |
| CCTGAACATAAGCTTATAAA+TGG | + | chr6_3:12279887-12279906 | None:intergenic | 30.0% | |
| CCATTTATAAGCTTATGTTC+AGG | - | chr6_3:12279884-12279903 | Msa0940050:intron | 30.0% | |
| ! | TTTTATCAAATTAGTACCCG+TGG | - | chr6_3:12279938-12279957 | Msa0940050:intron | 30.0% |
| TACATTAAATACAACACCAC+GGG | + | chr6_3:12279957-12279976 | None:intergenic | 30.0% | |
| GAGAAAACAACTTATTGAAG+TGG | - | chr6_3:12280037-12280056 | Msa0940050:intron | 30.0% | |
| ! | ATAGGGATAGATAAGCTTTT+CGG | - | chr6_3:12280147-12280166 | Msa0940050:intron | 30.0% |
| CATAATCCCTTCTAAGTATT+GGG | + | chr6_3:12280188-12280207 | None:intergenic | 30.0% | |
| TCATAATCCCTTCTAAGTAT+TGG | + | chr6_3:12280189-12280208 | None:intergenic | 30.0% | |
| TGATTGTTAGGAATTTGGTT+AGG | - | chr6_3:12280293-12280312 | Msa0940050:intron | 30.0% | |
| TTGTGATATATCTTTCTCCT+AGG | + | chr6_3:12280377-12280396 | None:intergenic | 30.0% | |
| !!! | ACGGCATAATTTTTGACTTA+TGG | - | chr6_3:12280398-12280417 | Msa0940050:intron | 30.0% |
| !!! | CGGCATAATTTTTGACTTAT+GGG | - | chr6_3:12280399-12280418 | Msa0940050:intron | 30.0% |
| AGCATACTTCCATCATATTT+AGG | - | chr6_3:12280529-12280548 | Msa0940050:intron | 30.0% | |
| TAGCTTATTGTATGTGCAAT+TGG | - | chr6_3:12280503-12280522 | Msa0940050:intron | 30.0% | |
| ! | TATGACATATATAAGCACTG+AGG | - | chr6_3:12280741-12280760 | Msa0940050:intron | 30.0% |
| ! | ACTGGTAACTATTTGAAACA+AGG | + | chr6_3:12280815-12280834 | None:intergenic | 30.0% |
| ! | TATTGCACCTTTTATCATTG+AGG | + | chr6_3:12280884-12280903 | None:intergenic | 30.0% |
| GTGCAATATATGTTGGAATT+TGG | - | chr6_3:12280896-12280915 | Msa0940050:intron | 30.0% | |
| !! | TTGAGGATTAGTCATATAGA+TGG | - | chr6_3:12280928-12280947 | Msa0940050:intron | 30.0% |
| GATAAGCACTTCAGTTTATT+TGG | + | chr6_3:12281194-12281213 | None:intergenic | 30.0% | |
| !! | GCTATTTCTGTAATCAAAGA+AGG | - | chr6_3:12281234-12281253 | Msa0940050:intron | 30.0% |
| GTAACTATTTCACTACAATG+AGG | + | chr6_3:12281381-12281400 | None:intergenic | 30.0% | |
| TATTGTAGTGAATCTCCAAA+GGG | - | chr6_3:12281424-12281443 | Msa0940050:intron | 30.0% | |
| TATAATCTGTCCTAGAGAAA+TGG | - | chr6_3:12281944-12281963 | Msa0940050:intron | 30.0% | |
| ATAATCTGTCCTAGAGAAAT+GGG | - | chr6_3:12281945-12281964 | Msa0940050:intron | 30.0% | |
| !! | TTCTTCTCAGTTTGACTTTT+AGG | - | chr6_3:12282102-12282121 | Msa0940050:intron | 30.0% |
| !! | TCTTCTCAGTTTGACTTTTA+GGG | - | chr6_3:12282103-12282122 | Msa0940050:intron | 30.0% |
| !!! | ACATTGGATATGGTTTTGTT+AGG | - | chr6_3:12282132-12282151 | Msa0940050:intron | 30.0% |
| ! | CCAAGGATTTTTATTCACAA+AGG | + | chr6_3:12282271-12282290 | None:intergenic | 30.0% |
| CCTTTGTGAATAAAAATCCT+TGG | - | chr6_3:12282268-12282287 | Msa0940050:CDS | 30.0% | |
| CAACTTTATAAGGAATACTC+TGG | + | chr6_3:12282390-12282409 | None:intergenic | 30.0% | |
| ! | CAGAGTATTCCTTATAAAGT+TGG | - | chr6_3:12282388-12282407 | Msa0940050:intron | 30.0% |
| !! | TTAGATCCCAAATTTTAAGG+TGG | - | chr6_3:12282454-12282473 | Msa0940050:intron | 30.0% |
| TCGTATAAGAAAGAATAAGG+AGG | + | chr6_3:12282748-12282767 | None:intergenic | 30.0% | |
| ! | ACTTAGTTGCTCAACTTTTA+GGG | - | chr6_3:12282859-12282878 | Msa0940050:intron | 30.0% |
| AGTGTTCACGGTATATTTAT+TGG | - | chr6_3:12283233-12283252 | Msa0940050:intron | 30.0% | |
| AATCTGTGCAAAAAAGAAAC+AGG | - | chr6_3:12283315-12283334 | Msa0940050:intron | 30.0% | |
| ATCTGTGCAAAAAAGAAACA+GGG | - | chr6_3:12283316-12283335 | Msa0940050:intron | 30.0% | |
| !! | GTGTGTTTTTGAGGAATATA+AGG | - | chr6_3:12283427-12283446 | Msa0940050:intron | 30.0% |
| ! | AATATAAGGGTACAGAAGTA+GGG | - | chr6_3:12283441-12283460 | Msa0940050:intron | 30.0% |
| GAGAAGAAAACAACTAAATG+TGG | - | chr6_3:12283483-12283502 | Msa0940050:intron | 30.0% | |
| GTTGAGTGAAATTGATGAAA+TGG | - | chr6_3:12283827-12283846 | Msa0940050:intron | 30.0% | |
| CTGGTATTACAGTTATTAAC+CGG | - | chr6_3:12283960-12283979 | Msa0940050:intron | 30.0% | |
| TCATATATGTATCAGTATGG+GGG | + | chr6_3:12284003-12284022 | None:intergenic | 30.0% | |
| TTGATTGTTCTGTTAAGTCA+TGG | - | chr6_3:12284148-12284167 | Msa0940050:intron | 30.0% | |
| GAAACACTTAGCATCATTAA+CGG | - | chr6_3:12284340-12284359 | Msa0940050:intron | 30.0% | |
| AAACACTTAGCATCATTAAC+GGG | - | chr6_3:12284341-12284360 | Msa0940050:intron | 30.0% | |
| ACATTAAATGTTGTGGTTAC+TGG | - | chr6_3:12284405-12284424 | Msa0940050:intron | 30.0% | |
| ATAATTATAAGCTCCTTCTC+AGG | - | chr6_3:12284449-12284468 | Msa0940050:intron | 30.0% | |
| TTTATTTCATGTTGTTGTCC+AGG | - | chr6_3:12284801-12284820 | Msa0940050:intron | 30.0% | |
| ! | AAGTTATGGTGGAATATTTG+AGG | + | chr6_3:12284868-12284887 | None:intergenic | 30.0% |
| TTGTATAAAGATTCTATCCC+TGG | - | chr6_3:12285038-12285057 | Msa0940050:intron | 30.0% | |
| ! | GTAATCCCATATTCGATTTT+GGG | + | chr6_3:12285159-12285178 | None:intergenic | 30.0% |
| TATGGTTCATGGTAAAATCA+AGG | + | chr6_3:12285292-12285311 | None:intergenic | 30.0% | |
| TTCTAGTATCATATGGTTCA+TGG | + | chr6_3:12285303-12285322 | None:intergenic | 30.0% | |
| !! | AAACCAAAATACTGACTTGT+GGG | + | chr6_3:12285398-12285417 | None:intergenic | 30.0% |
| ATTGGAATTGAAATGAAGGC+AGG | - | chr6_3:12278710-12278729 | Msa0940050:CDS | 35.0% | |
| TTGGAATTGAAATGAAGGCA+GGG | - | chr6_3:12278711-12278730 | Msa0940050:CDS | 35.0% | |
| !!! | AGTTTTGGATTCACTTGCTA+TGG | - | chr6_3:12278970-12278989 | Msa0940050:intron | 35.0% |
| !! | TTCTTGAAGCTTTGTTGAGA+TGG | - | chr6_3:12279017-12279036 | Msa0940050:CDS | 35.0% |
| !! | TATTACAAAACCGGCTTGTA+AGG | - | chr6_3:12279372-12279391 | Msa0940050:CDS | 35.0% |
| GAAAATAGGCTTAAGTGGTT+TGG | - | chr6_3:12279446-12279465 | Msa0940050:intron | 35.0% | |
| ATGGAGGATAGTCAAATTAC+AGG | - | chr6_3:12279518-12279537 | Msa0940050:intron | 35.0% | |
| CAAAGCCTATTCAAATCAGT+TGG | + | chr6_3:12279793-12279812 | None:intergenic | 35.0% | |
| GTAACTCATCCTTACATAAC+TGG | - | chr6_3:12279840-12279859 | Msa0940050:intron | 35.0% | |
| CATTACAAGCCAGTTATGTA+AGG | + | chr6_3:12279852-12279871 | None:intergenic | 35.0% | |
| !! | CATAACTGGCTTGTAATGTA+AGG | - | chr6_3:12279854-12279873 | Msa0940050:intron | 35.0% |
| !! | GATTGTACCGTTAGCTTTAT+TGG | - | chr6_3:12279995-12280014 | Msa0940050:intron | 35.0% |
| ATTGGAACCCAATACTTAGA+AGG | - | chr6_3:12280178-12280197 | Msa0940050:intron | 35.0% | |
| TTGGAACCCAATACTTAGAA+GGG | - | chr6_3:12280179-12280198 | Msa0940050:intron | 35.0% | |
| ! | TTTTTGTTCATGTAGAGCCT+AGG | - | chr6_3:12280357-12280376 | Msa0940050:intron | 35.0% |
| ! | AGCTTGTTTAGATAAGTTCC+TGG | - | chr6_3:12280634-12280653 | Msa0940050:intron | 35.0% |
| TTGCTTTCGTAAGTTATCAC+TGG | + | chr6_3:12280833-12280852 | None:intergenic | 35.0% | |
| CTCAATTAAGTTCTTCCTGA+TGG | - | chr6_3:12281070-12281089 | Msa0940050:CDS | 35.0% | |
| !! | AGCTATTTTCATAAGCCATC+AGG | + | chr6_3:12281088-12281107 | None:intergenic | 35.0% |
| CTATCATTGAAGTGTGAGTA+TGG | + | chr6_3:12281135-12281154 | None:intergenic | 35.0% | |
| ACTATTTCACTACAATGAGG+AGG | + | chr6_3:12281378-12281397 | None:intergenic | 35.0% | |
| CTATTGTAGTGAATCTCCAA+AGG | - | chr6_3:12281423-12281442 | Msa0940050:intron | 35.0% | |
| ! | TTGGTTTGATCACAAAACTG+CGG | - | chr6_3:12281569-12281588 | Msa0940050:intron | 35.0% |
| TGAGCAAAAAATGCATTCCA+CGG | + | chr6_3:12281647-12281666 | None:intergenic | 35.0% | |
| ! | ATTGGCTTATAAATGCTGAC+AGG | - | chr6_3:12281858-12281877 | Msa0940050:intron | 35.0% |
| TAAGCTGTTGTAGATGCTAT+TGG | - | chr6_3:12281886-12281905 | Msa0940050:intron | 35.0% | |
| !! | GGACAGATTATAGCTTTTTC+AGG | + | chr6_3:12281936-12281955 | None:intergenic | 35.0% |
| !!! | ACTTTTAGGGTGCTTAACAT+TGG | - | chr6_3:12282116-12282135 | Msa0940050:intron | 35.0% |
| !!! | ATATGGTTTTGTTAGGAGAC+AGG | - | chr6_3:12282139-12282158 | Msa0940050:intron | 35.0% |
| !!! | TATGGTTTTGTTAGGAGACA+GGG | - | chr6_3:12282140-12282159 | Msa0940050:intron | 35.0% |
| AAACGAATTGTCCAAGAAGT+GGG | + | chr6_3:12282420-12282439 | None:intergenic | 35.0% | |
| ! | TGGACAATTCGTTTGAGTTT+AGG | - | chr6_3:12282426-12282445 | Msa0940050:intron | 35.0% |
| !!! | TCCCAAATTTTAAGGTGGTA+TGG | - | chr6_3:12282459-12282478 | Msa0940050:CDS | 35.0% |
| CCCATACCACCTTAAAATTT+GGG | + | chr6_3:12282463-12282482 | None:intergenic | 35.0% | |
| !!! | CCCAAATTTTAAGGTGGTAT+GGG | - | chr6_3:12282460-12282479 | Msa0940050:CDS | 35.0% |
| TCCCATACCACCTTAAAATT+TGG | + | chr6_3:12282464-12282483 | None:intergenic | 35.0% | |
| !!! | AAATTTTAAGGTGGTATGGG+AGG | - | chr6_3:12282463-12282482 | Msa0940050:CDS | 35.0% |
| ATAGACAAATGCAACTGCAA+TGG | + | chr6_3:12282508-12282527 | None:intergenic | 35.0% | |
| ! | CTAGCTTAAGAAGTGTAGAT+TGG | + | chr6_3:12282572-12282591 | None:intergenic | 35.0% |
| !!! | ACACTTCTTAAGCTAGCTTT+TGG | - | chr6_3:12282576-12282595 | Msa0940050:intron | 35.0% |
| !!! | CACTTCTTAAGCTAGCTTTT+GGG | - | chr6_3:12282577-12282596 | Msa0940050:intron | 35.0% |
| !!! | ACTTCTTAAGCTAGCTTTTG+GGG | - | chr6_3:12282578-12282597 | Msa0940050:intron | 35.0% |
| ! | GACTTAGTTGCTCAACTTTT+AGG | - | chr6_3:12282858-12282877 | Msa0940050:intron | 35.0% |
| ! | CTTAGTTGCTCAACTTTTAG+GGG | - | chr6_3:12282860-12282879 | Msa0940050:intron | 35.0% |
| TTTCCAATCATACCTGATAC+GGG | + | chr6_3:12282892-12282911 | None:intergenic | 35.0% | |
| GTTTCCAATCATACCTGATA+CGG | + | chr6_3:12282893-12282912 | None:intergenic | 35.0% | |
| AATCTGCCTTAACATCGTAA+TGG | + | chr6_3:12282923-12282942 | None:intergenic | 35.0% | |
| ATGTAATCTACTGCTTCTAG+AGG | - | chr6_3:12283133-12283152 | Msa0940050:intron | 35.0% | |
| TGTAATCTACTGCTTCTAGA+GGG | - | chr6_3:12283134-12283153 | Msa0940050:intron | 35.0% | |
| GGAATTGTAATGCAGACATT+TGG | - | chr6_3:12283188-12283207 | Msa0940050:intron | 35.0% | |
| TTTGTACTGTTCAGTGTTCA+CGG | - | chr6_3:12283221-12283240 | Msa0940050:intron | 35.0% | |
| TCACAATAGTTTAGACAACC+AGG | + | chr6_3:12283359-12283378 | None:intergenic | 35.0% | |
| ! | GAATATAAGGGTACAGAAGT+AGG | - | chr6_3:12283440-12283459 | Msa0940050:intron | 35.0% |
| ! | ATATAAGGGTACAGAAGTAG+GGG | - | chr6_3:12283442-12283461 | Msa0940050:intron | 35.0% |
| AAGTAGGGGAATCTGTTATA+AGG | - | chr6_3:12283456-12283475 | Msa0940050:intron | 35.0% | |
| AGTAGGGGAATCTGTTATAA+GGG | - | chr6_3:12283457-12283476 | Msa0940050:intron | 35.0% | |
| AGAAAACAACTAAATGTGGC+TGG | - | chr6_3:12283487-12283506 | Msa0940050:intron | 35.0% | |
| TGGGAGTCAGAATATAAGTA+AGG | - | chr6_3:12283558-12283577 | Msa0940050:intron | 35.0% | |
| GGGAGTCAGAATATAAGTAA+GGG | - | chr6_3:12283559-12283578 | Msa0940050:intron | 35.0% | |
| GGAGTCAGAATATAAGTAAG+GGG | - | chr6_3:12283560-12283579 | Msa0940050:intron | 35.0% | |
| TATGTACCAACCTAAGACAA+AGG | + | chr6_3:12283635-12283654 | None:intergenic | 35.0% | |
| GAATAACTTCACAACAGAAC+TGG | + | chr6_3:12283709-12283728 | None:intergenic | 35.0% | |
| GAGACCATATTCTGTTATGT+TGG | + | chr6_3:12283941-12283960 | None:intergenic | 35.0% | |
| ACATAACAGAATATGGTCTC+TGG | - | chr6_3:12283941-12283960 | Msa0940050:intron | 35.0% | |
| TAACAAAGCTTCGGTATTCA+GGG | + | chr6_3:12284048-12284067 | None:intergenic | 35.0% | |
| ATAACAAAGCTTCGGTATTC+AGG | + | chr6_3:12284049-12284068 | None:intergenic | 35.0% | |
| TGGATAGCATTATCTGATGT+TGG | - | chr6_3:12284425-12284444 | Msa0940050:intron | 35.0% | |
| !! | AGTTCACTTTTCCGTTTATG+AGG | + | chr6_3:12284543-12284562 | None:intergenic | 35.0% |
| ACAACATATTGCATAGAGCA+TGG | + | chr6_3:12284569-12284588 | None:intergenic | 35.0% | |
| ! | GCATGAGTTGAACTCTTATA+CGG | + | chr6_3:12284686-12284705 | None:intergenic | 35.0% |
| TAAGAGTTCAACTCATGCAT+TGG | - | chr6_3:12284688-12284707 | Msa0940050:intron | 35.0% | |
| TACTTGACATTAGTAGGCAT+AGG | + | chr6_3:12284772-12284791 | None:intergenic | 35.0% | |
| ATAAAGATTCTATCCCTGGT+TGG | - | chr6_3:12285042-12285061 | Msa0940050:intron | 35.0% | |
| ! | ATTGTCTTCACCGAGTTTTA+AGG | - | chr6_3:12285102-12285121 | Msa0940050:intron | 35.0% |
| ! | GGTAATCCCATATTCGATTT+TGG | + | chr6_3:12285160-12285179 | None:intergenic | 35.0% |
| TACAACTTCTAGCAGTTCTA+AGG | - | chr6_3:12285195-12285214 | Msa0940050:exon | 35.0% | |
| !! | CAAACCAAAATACTGACTTG+TGG | + | chr6_3:12285399-12285418 | None:intergenic | 35.0% |
| !!! | CACAAGTCAGTATTTTGGTT+TGG | - | chr6_3:12285397-12285416 | Msa0940050:five_prime_UTR | 35.0% |
| GAAGAAGAGGAGGATCTAAT+TGG | + | chr6_3:12278519-12278538 | None:intergenic | 40.0% | |
| TTGAAGAGTGGAAGAAGAAG+AGG | + | chr6_3:12278532-12278551 | None:intergenic | 40.0% | |
| TGAAGAAGAAGGTCTGATGA+GGG | + | chr6_3:12278563-12278582 | None:intergenic | 40.0% | |
| TTGAAGAAGAAGGTCTGATG+AGG | + | chr6_3:12278564-12278583 | None:intergenic | 40.0% | |
| ! | TCCAAAACTTGTTCATAGGC+CGG | + | chr6_3:12278959-12278978 | None:intergenic | 40.0% |
| !! | ATTCACTTGCTATGGTTGCA+CGG | - | chr6_3:12278978-12278997 | Msa0940050:intron | 40.0% |
| AAAGCTTCAAGAAGTGGAAC+AGG | + | chr6_3:12279010-12279029 | None:intergenic | 40.0% | |
| CTCAACAAAGCTTCAAGAAG+TGG | + | chr6_3:12279016-12279035 | None:intergenic | 40.0% | |
| CTTGTGTCTAGTGTGAATGT+TGG | - | chr6_3:12279201-12279220 | Msa0940050:CDS | 40.0% | |
| TGGTGGAAAATAGGCTTAAG+TGG | - | chr6_3:12279441-12279460 | Msa0940050:CDS | 40.0% | |
| AAGGAGAGTAGATTAGATGG+AGG | - | chr6_3:12279502-12279521 | Msa0940050:intron | 40.0% | |
| GAGGATAGTCAAATTACAGG+AGG | - | chr6_3:12279521-12279540 | Msa0940050:intron | 40.0% | |
| TGTCTAGTCATGGACATGAT+GGG | + | chr6_3:12279719-12279738 | None:intergenic | 40.0% | |
| ATGTCTAGTCATGGACATGA+TGG | + | chr6_3:12279720-12279739 | None:intergenic | 40.0% | |
| !! | GTGGTCCAACTGATTTGAAT+AGG | - | chr6_3:12279785-12279804 | Msa0940050:CDS | 40.0% |
| AACCGTAATCCCTGAAATCA+CGG | + | chr6_3:12280230-12280249 | None:intergenic | 40.0% | |
| TCAGGGATTACGGTTATTTG+AGG | - | chr6_3:12280235-12280254 | Msa0940050:intron | 40.0% | |
| CAGGGATTACGGTTATTTGA+GGG | - | chr6_3:12280236-12280255 | Msa0940050:intron | 40.0% | |
| GCTCTCTCAGTCACTTATAT+TGG | - | chr6_3:12281275-12281294 | Msa0940050:intron | 40.0% | |
| TGCATCTACGTTCCAAAGAA+AGG | - | chr6_3:12281456-12281475 | Msa0940050:intron | 40.0% | |
| GTGGACAACATTCCACAAAT+CGG | + | chr6_3:12281678-12281697 | None:intergenic | 40.0% | |
| CACTGTTCAACTTCAAACAC+TGG | - | chr6_3:12282016-12282035 | Msa0940050:intron | 40.0% | |
| ! | AGGGTGCTTAACATTGGATA+TGG | - | chr6_3:12282122-12282141 | Msa0940050:intron | 40.0% |
| ATGGGAATAGAATTCTCCCA+AGG | + | chr6_3:12282288-12282307 | None:intergenic | 40.0% | |
| CAATGTGGGATCTCAACATA+AGG | + | chr6_3:12282354-12282373 | None:intergenic | 40.0% | |
| ! | TCCCACATTGACTAGAGATA+TGG | - | chr6_3:12282364-12282383 | Msa0940050:intron | 40.0% |
| GCCATATCTCTAGTCAATGT+GGG | + | chr6_3:12282368-12282387 | None:intergenic | 40.0% | |
| CAAACGAATTGTCCAAGAAG+TGG | + | chr6_3:12282421-12282440 | None:intergenic | 40.0% | |
| ACTACATTGAACGTCTGGAT+TGG | + | chr6_3:12282534-12282553 | None:intergenic | 40.0% | |
| ACATAGTGAACTCTTGTTGC+AGG | - | chr6_3:12282781-12282800 | Msa0940050:intron | 40.0% | |
| CATAGTGAACTCTTGTTGCA+GGG | - | chr6_3:12282782-12282801 | Msa0940050:intron | 40.0% | |
| TATCCCGTATCAGGTATGAT+TGG | - | chr6_3:12282886-12282905 | Msa0940050:intron | 40.0% | |
| GCTTGACCATTACGATGTTA+AGG | - | chr6_3:12282914-12282933 | Msa0940050:intron | 40.0% | |
| ! | GTAATCTACTGCTTCTAGAG+GGG | - | chr6_3:12283135-12283154 | Msa0940050:intron | 40.0% |
| ! | TAATCTACTGCTTCTAGAGG+GGG | - | chr6_3:12283136-12283155 | Msa0940050:intron | 40.0% |
| AAGAAACAGGGTTACTAGCA+AGG | - | chr6_3:12283328-12283347 | Msa0940050:intron | 40.0% | |
| ! | TTTGATGGCCTAACAACATG+AGG | - | chr6_3:12283402-12283421 | Msa0940050:intron | 40.0% |
| AAACAACTAAATGTGGCTGG+TGG | - | chr6_3:12283490-12283509 | Msa0940050:intron | 40.0% | |
| CTGGTGGCATATGATGATTT+GGG | - | chr6_3:12283506-12283525 | Msa0940050:intron | 40.0% | |
| ! | TGGCATATGATGATTTGGGT+GGG | - | chr6_3:12283510-12283529 | Msa0940050:intron | 40.0% |
| GTCAGAATATAAGTAAGGGG+AGG | - | chr6_3:12283563-12283582 | Msa0940050:intron | 40.0% | |
| ! | GGGAATGGTAAATTTTGCAG+AGG | - | chr6_3:12283600-12283619 | Msa0940050:intron | 40.0% |
| ! | GGTAAATTTTGCAGAGGTTG+AGG | - | chr6_3:12283606-12283625 | Msa0940050:intron | 40.0% |
| CAACAGAGACTCTTAGGTTT+CGG | + | chr6_3:12283811-12283830 | None:intergenic | 40.0% | |
| TTCACTCAACAGAGACTCTT+AGG | + | chr6_3:12283817-12283836 | None:intergenic | 40.0% | |
| ATCAAAATGGACAGAAGCAG+AGG | + | chr6_3:12284133-12284152 | None:intergenic | 40.0% | |
| !! | GGTTTAGTTCTGTTACTGAG+CGG | - | chr6_3:12284266-12284285 | Msa0940050:intron | 40.0% |
| ! | TGTTACTGAGCGGTTTTTCA+TGG | - | chr6_3:12284276-12284295 | Msa0940050:intron | 40.0% |
| TTATACATACCCCAAGCTTC+AGG | + | chr6_3:12284375-12284394 | None:intergenic | 40.0% | |
| TCCTTCTCAGGTTAAAACTG+AGG | - | chr6_3:12284461-12284480 | Msa0940050:intron | 40.0% | |
| CCTTCTCAGGTTAAAACTGA+GGG | - | chr6_3:12284462-12284481 | Msa0940050:intron | 40.0% | |
| ! | TATGAGGAGCACGGTTTAAA+GGG | + | chr6_3:12284527-12284546 | None:intergenic | 40.0% |
| ! | TTATGAGGAGCACGGTTTAA+AGG | + | chr6_3:12284528-12284547 | None:intergenic | 40.0% |
| TAAACCGTGCTCCTCATAAA+CGG | - | chr6_3:12284529-12284548 | Msa0940050:intron | 40.0% | |
| ! | TTTTCCGTTTATGAGGAGCA+CGG | + | chr6_3:12284536-12284555 | None:intergenic | 40.0% |
| TCATACCACAAAGTAAGTGC+AGG | + | chr6_3:12284654-12284673 | None:intergenic | 40.0% | |
| ACTTTGTGGTATGAAGCTGT+TGG | - | chr6_3:12284660-12284679 | Msa0940050:intron | 40.0% | |
| AGTTCAACTCATGCATTGGA+TGG | - | chr6_3:12284692-12284711 | Msa0940050:intron | 40.0% | |
| AGCAAACATCTTGCAGTAAG+TGG | - | chr6_3:12284723-12284742 | Msa0940050:intron | 40.0% | |
| GCAAACATCTTGCAGTAAGT+GGG | - | chr6_3:12284724-12284743 | Msa0940050:intron | 40.0% | |
| TTTCATGTTGTTGTCCAGGT+TGG | - | chr6_3:12284805-12284824 | Msa0940050:intron | 40.0% | |
| TTCATGTTGTTGTCCAGGTT+GGG | - | chr6_3:12284806-12284825 | Msa0940050:intron | 40.0% | |
| CACAGAAGAAGAGTTACCAA+CGG | + | chr6_3:12284835-12284854 | None:intergenic | 40.0% | |
| GTAACTCTTCTTCTGTGTCT+TGG | - | chr6_3:12284838-12284857 | Msa0940050:intron | 40.0% | |
| TGTGAGGACTTAAGTTATGG+TGG | + | chr6_3:12284879-12284898 | None:intergenic | 40.0% | |
| CCATGTGAGGACTTAAGTTA+TGG | + | chr6_3:12284882-12284901 | None:intergenic | 40.0% | |
| CCATAACTTAAGTCCTCACA+TGG | - | chr6_3:12284879-12284898 | Msa0940050:intron | 40.0% | |
| AGCAGCTCTACAAACTTCTT+AGG | - | chr6_3:12284902-12284921 | Msa0940050:intron | 40.0% | |
| GCAGCTCTACAAACTTCTTA+GGG | - | chr6_3:12284903-12284922 | Msa0940050:intron | 40.0% | |
| GGATAAGAATCACCGTTTCA+TGG | - | chr6_3:12285073-12285092 | Msa0940050:intron | 40.0% | |
| GACAATCCAAAGCCATGAAA+CGG | + | chr6_3:12285088-12285107 | None:intergenic | 40.0% | |
| ATCAGGCCCAAAATCGAATA+TGG | - | chr6_3:12285150-12285169 | Msa0940050:CDS | 40.0% | |
| TCAGGCCCAAAATCGAATAT+GGG | - | chr6_3:12285151-12285170 | Msa0940050:CDS | 40.0% | |
| GTTGTAGTGTTACACTGTCT+AGG | + | chr6_3:12285181-12285200 | None:intergenic | 40.0% | |
| !! | CTTCTAGCAGTTCTAAGGAA+AGG | - | chr6_3:12285200-12285219 | Msa0940050:exon | 40.0% |
| AAGGAAAGGATTGCTTACTC+AGG | - | chr6_3:12285214-12285233 | Msa0940050:five_prime_UTR | 40.0% | |
| CAATAACCTTTGCTTCACTG+GGG | + | chr6_3:12285343-12285362 | None:intergenic | 40.0% | |
| CCAATAACCTTTGCTTCACT+GGG | + | chr6_3:12285344-12285363 | None:intergenic | 40.0% | |
| ACCAATAACCTTTGCTTCAC+TGG | + | chr6_3:12285345-12285364 | None:intergenic | 40.0% | |
| ! | TTGCCCACAAGTCAGTATTT+TGG | - | chr6_3:12285392-12285411 | Msa0940050:five_prime_UTR | 40.0% |
| AAGAGTGGAAGAAGAAGAGG+AGG | + | chr6_3:12278529-12278548 | None:intergenic | 45.0% | |
| AGAAGGTCTGATGAGGGTTT+GGG | + | chr6_3:12278557-12278576 | None:intergenic | 45.0% | |
| AAGAAGGTCTGATGAGGGTT+TGG | + | chr6_3:12278558-12278577 | None:intergenic | 45.0% | |
| TATTGAAACCGCTCAAGCTC+AGG | - | chr6_3:12278796-12278815 | Msa0940050:CDS | 45.0% | |
| GTAACATACCTGAGCTTGAG+CGG | + | chr6_3:12278807-12278826 | None:intergenic | 45.0% | |
| TATTGTTGCGGGTGTACGAT+AGG | - | chr6_3:12278907-12278926 | Msa0940050:intron | 45.0% | |
| ! | TCCGGCCTATGAACAAGTTT+TGG | - | chr6_3:12278955-12278974 | Msa0940050:intron | 45.0% |
| CTTTGTTGAGATGGAGAGAG+AGG | - | chr6_3:12279026-12279045 | Msa0940050:CDS | 45.0% | |
| GCAGTAATCACCTTACAAGC+CGG | + | chr6_3:12279385-12279404 | None:intergenic | 45.0% | |
| !! | ATGTAGTGGACCACACTTAG+TGG | - | chr6_3:12279634-12279653 | Msa0940050:CDS | 45.0% |
| !! | TGTAGTGGACCACACTTAGT+GGG | - | chr6_3:12279635-12279654 | Msa0940050:CDS | 45.0% |
| ! | AAGCCTTATCCCACTAAGTG+TGG | + | chr6_3:12279647-12279666 | None:intergenic | 45.0% |
| ! | AAGCCTTATCGCATCCAATG+TGG | - | chr6_3:12279681-12279700 | Msa0940050:intron | 45.0% |
| GTTCCACATTGGATGCGATA+AGG | + | chr6_3:12279687-12279706 | None:intergenic | 45.0% | |
| GTCTAGTCATGGACATGATG+GGG | + | chr6_3:12279718-12279737 | None:intergenic | 45.0% | |
| ACGCTCTACATGTCTAGTCA+TGG | + | chr6_3:12279729-12279748 | None:intergenic | 45.0% | |
| CATGTAGAGCGTAACTTGAG+TGG | - | chr6_3:12279737-12279756 | Msa0940050:intron | 45.0% | |
| ! | AGCTTTTCGGCTCAAAGCAT+TGG | - | chr6_3:12280160-12280179 | Msa0940050:intron | 45.0% |
| TGACATGCACCGTGATTTCA+GGG | - | chr6_3:12280218-12280237 | Msa0940050:intron | 45.0% | |
| CACCGTGATTTCAGGGATTA+CGG | - | chr6_3:12280225-12280244 | Msa0940050:intron | 45.0% | |
| AGGGAGAGATAGTTGTGTAG+AGG | - | chr6_3:12280255-12280274 | Msa0940050:intron | 45.0% | |
| CACATACAATAAGCTACGCC+AGG | + | chr6_3:12280655-12280674 | None:intergenic | 45.0% | |
| GATGCATCATTTGCACCCTT+TGG | + | chr6_3:12281442-12281461 | None:intergenic | 45.0% | |
| TGTGGAATGTTGTCCACAAG+AGG | - | chr6_3:12281681-12281700 | Msa0940050:intron | 45.0% | |
| GTGGAATGTTGTCCACAAGA+GGG | - | chr6_3:12281682-12281701 | Msa0940050:intron | 45.0% | |
| TGGAATGTTGTCCACAAGAG+GGG | - | chr6_3:12281683-12281702 | Msa0940050:intron | 45.0% | |
| TCTATGCTGCAGAGAAGCTA+TGG | - | chr6_3:12281810-12281829 | Msa0940050:intron | 45.0% | |
| TCAAAGGGACCCATTTCTCT+AGG | + | chr6_3:12281957-12281976 | None:intergenic | 45.0% | |
| CTGAGAAGAAGAGTTGCTTG+AGG | + | chr6_3:12282092-12282111 | None:intergenic | 45.0% | |
| GGCCATATCTCTAGTCAATG+TGG | + | chr6_3:12282369-12282388 | None:intergenic | 45.0% | |
| GGGCATGGACCAACTTTATA+AGG | + | chr6_3:12282400-12282419 | None:intergenic | 45.0% | |
| AATTGTCCAAGAAGTGGGCA+TGG | + | chr6_3:12282415-12282434 | None:intergenic | 45.0% | |
| AAGGGACTACATTGAACGTC+TGG | + | chr6_3:12282539-12282558 | None:intergenic | 45.0% | |
| CGTTCAATGTAGTCCCTTTG+AGG | - | chr6_3:12282541-12282560 | Msa0940050:intron | 45.0% | |
| !! | AATGTAGTCCCTTTGAGGCT+TGG | - | chr6_3:12282546-12282565 | Msa0940050:intron | 45.0% |
| ! | TAGATTGGCCAAGCCTCAAA+GGG | + | chr6_3:12282557-12282576 | None:intergenic | 45.0% |
| TTGTTGCAGGGTTGTTAGTC+AGG | - | chr6_3:12282794-12282813 | Msa0940050:intron | 45.0% | |
| ! | ATCCCTCACTTGTTGATCTG+AGG | - | chr6_3:12282823-12282842 | Msa0940050:intron | 45.0% |
| ! | TCCCTCACTTGTTGATCTGA+GGG | - | chr6_3:12282824-12282843 | Msa0940050:intron | 45.0% |
| ACACACAGCCTCATGTTGTT+AGG | + | chr6_3:12283413-12283432 | None:intergenic | 45.0% | |
| !! | CATGAGGCTGTGTGTTTTTG+AGG | - | chr6_3:12283418-12283437 | Msa0940050:intron | 45.0% |
| GCTGGTGGCATATGATGATT+TGG | - | chr6_3:12283505-12283524 | Msa0940050:intron | 45.0% | |
| ! | GTGGCATATGATGATTTGGG+TGG | - | chr6_3:12283509-12283528 | Msa0940050:intron | 45.0% |
| ! | TGATGATTTGGGTGGGAGAT+TGG | - | chr6_3:12283517-12283536 | Msa0940050:intron | 45.0% |
| TTGGGTGGGAGATTGGAAAA+TGG | - | chr6_3:12283524-12283543 | Msa0940050:intron | 45.0% | |
| TGGGTGGGAGATTGGAAAAT+GGG | - | chr6_3:12283525-12283544 | Msa0940050:intron | 45.0% | |
| GAAAATGGGGGGATGAACAT+GGG | - | chr6_3:12283539-12283558 | Msa0940050:intron | 45.0% | |
| GCAAAATTTACCATTCCCCC+TGG | + | chr6_3:12283598-12283617 | None:intergenic | 45.0% | |
| GTTGAGGTTGCCTTTGTCTT+AGG | - | chr6_3:12283622-12283641 | Msa0940050:intron | 45.0% | |
| AGGTTGCCTTTGTCTTAGGT+TGG | - | chr6_3:12283626-12283645 | Msa0940050:intron | 45.0% | |
| TTTATCCCAGTCTTCCAGCT+AGG | - | chr6_3:12283733-12283752 | Msa0940050:intron | 45.0% | |
| ! | CTAGGTTGAGAGAACGTGAA+GGG | - | chr6_3:12283751-12283770 | Msa0940050:intron | 45.0% |
| ! | GAGAACGTGAAGGGAAGTAT+AGG | - | chr6_3:12283760-12283779 | Msa0940050:intron | 45.0% |
| AGACTCTTAGGTTTCGGTCT+TGG | + | chr6_3:12283805-12283824 | None:intergenic | 45.0% | |
| ! | CTTCGGTATTCAGGGAGTAT+TGG | + | chr6_3:12284040-12284059 | None:intergenic | 45.0% |
| TCTGTTAAGTCATGGCCACA+AGG | - | chr6_3:12284156-12284175 | Msa0940050:intron | 45.0% | |
| CTGTTAAGTCATGGCCACAA+GGG | - | chr6_3:12284157-12284176 | Msa0940050:intron | 45.0% | |
| TGTTTCACTTCTAGCAGCAC+TGG | + | chr6_3:12284326-12284345 | None:intergenic | 45.0% | |
| !! | CCCTCAGTTTTAACCTGAGA+AGG | + | chr6_3:12284465-12284484 | None:intergenic | 45.0% |
| TCTCAGGTTAAAACTGAGGG+AGG | - | chr6_3:12284465-12284484 | Msa0940050:intron | 45.0% | |
| GAATGCATCTGCTTCCTTTG+TGG | - | chr6_3:12284491-12284510 | Msa0940050:intron | 45.0% | |
| !! | AGGGTTTGCTTTTGCCACAA+AGG | + | chr6_3:12284508-12284527 | None:intergenic | 45.0% |
| TAGAGCCTGCACTTACTTTG+TGG | - | chr6_3:12284646-12284665 | Msa0940050:intron | 45.0% | |
| TATCCTGCATGATCCAACCA+GGG | + | chr6_3:12285058-12285077 | None:intergenic | 45.0% | |
| TTATCCTGCATGATCCAACC+AGG | + | chr6_3:12285059-12285078 | None:intergenic | 45.0% | |
| GAATCACCGTTTCATGGCTT+TGG | - | chr6_3:12285079-12285098 | Msa0940050:intron | 45.0% | |
| CCCAGTGAAGCAAAGGTTAT+TGG | - | chr6_3:12285341-12285360 | Msa0940050:five_prime_UTR | 45.0% | |
| !! | ATAATAATTAATTGTATAAA+TGG | + | chr6_3:12279410-12279429 | None:intergenic | 5.0% |
| !!! | ATTTTTTTTTAACATTTTTA+AGG | - | chr6_3:12283089-12283108 | Msa0940050:intron | 5.0% |
| !!! | TTTTTTTTTAACATTTTTAA+GGG | - | chr6_3:12283090-12283109 | Msa0940050:intron | 5.0% |
| AGGGTTTGGGAGTTGAAGAG+TGG | + | chr6_3:12278544-12278563 | None:intergenic | 50.0% | |
| TTGCGGGTGTACGATAGGAT+GGG | - | chr6_3:12278912-12278931 | Msa0940050:intron | 50.0% | |
| ATACCTGCGACCATCTGATC+CGG | - | chr6_3:12278937-12278956 | Msa0940050:intron | 50.0% | |
| TGTTCATAGGCCGGATCAGA+TGG | + | chr6_3:12278950-12278969 | None:intergenic | 50.0% | |
| GGACCACACTTAGTGGGATA+AGG | - | chr6_3:12279641-12279660 | Msa0940050:CDS | 50.0% | |
| GGGTGGTTAGAGTTCCACAT+TGG | + | chr6_3:12279698-12279717 | None:intergenic | 50.0% | |
| ! | TAGTCATGGACATGATGGGG+TGG | + | chr6_3:12279715-12279734 | None:intergenic | 50.0% |
| GTGACATGCACCGTGATTTC+AGG | - | chr6_3:12280217-12280236 | Msa0940050:intron | 50.0% | |
| !! | GGTTAGGAGAGTACTCTCTC+TGG | - | chr6_3:12280309-12280328 | Msa0940050:intron | 50.0% |
| ! | CTCAGCTTGCATCCGATTTG+TGG | - | chr6_3:12281663-12281682 | Msa0940050:intron | 50.0% |
| AAACCAGTAAGCCCCTCTTG+TGG | + | chr6_3:12281697-12281716 | None:intergenic | 50.0% | |
| AGAGAAGCTATGGTCTGGAC+TGG | - | chr6_3:12281820-12281839 | Msa0940050:intron | 50.0% | |
| ! | GTAGATTGGCCAAGCCTCAA+AGG | + | chr6_3:12282558-12282577 | None:intergenic | 50.0% |
| CCCCTCAGATCAACAAGTGA+GGG | + | chr6_3:12282828-12282847 | None:intergenic | 50.0% | |
| ! | CCCTCACTTGTTGATCTGAG+GGG | - | chr6_3:12282825-12282844 | Msa0940050:intron | 50.0% |
| ! | CCTCACTTGTTGATCTGAGG+GGG | - | chr6_3:12282826-12282845 | Msa0940050:intron | 50.0% |
| ! | TAGGGGCTTTATCCCGTATC+AGG | - | chr6_3:12282877-12282896 | Msa0940050:intron | 50.0% |
| GTTACTAGCAAGGTCACACC+TGG | - | chr6_3:12283338-12283357 | Msa0940050:intron | 50.0% | |
| GGGTGGGAGATTGGAAAATG+GGG | - | chr6_3:12283526-12283545 | Msa0940050:intron | 50.0% | |
| GGTGGGAGATTGGAAAATGG+GGG | - | chr6_3:12283527-12283546 | Msa0940050:intron | 50.0% | |
| GTGGGAGATTGGAAAATGGG+GGG | - | chr6_3:12283528-12283547 | Msa0940050:intron | 50.0% | |
| GGAAAATGGGGGGATGAACA+TGG | - | chr6_3:12283538-12283557 | Msa0940050:intron | 50.0% | |
| CTCAACCTAGCTGGAAGACT+GGG | + | chr6_3:12283741-12283760 | None:intergenic | 50.0% | |
| TCTCAACCTAGCTGGAAGAC+TGG | + | chr6_3:12283742-12283761 | None:intergenic | 50.0% | |
| TCACGTTCTCTCAACCTAGC+TGG | + | chr6_3:12283750-12283769 | None:intergenic | 50.0% | |
| ! | GCTAGGTTGAGAGAACGTGA+AGG | - | chr6_3:12283750-12283769 | Msa0940050:intron | 50.0% |
| ! | GCCACAAGGGTATGAAGTTG+AGG | - | chr6_3:12284170-12284189 | Msa0940050:intron | 50.0% |
| GCCTCAACTTCATACCCTTG+TGG | + | chr6_3:12284174-12284193 | None:intergenic | 50.0% | |
| ATCCTAGCACCTCTTGCAGA+TGG | - | chr6_3:12284594-12284613 | Msa0940050:intron | 50.0% | |
| TAGCACCTCTTGCAGATGGT+GGG | - | chr6_3:12284598-12284617 | Msa0940050:intron | 50.0% | |
| TTACCAACGGATACCCAACC+TGG | + | chr6_3:12284822-12284841 | None:intergenic | 50.0% | |
| TTGTAGAGCTGCTCCATGTG+AGG | + | chr6_3:12284895-12284914 | None:intergenic | 50.0% | |
| TATCCCTGGTTGGATCATGC+AGG | - | chr6_3:12285052-12285071 | Msa0940050:intron | 50.0% | |
| AGATAGCCCCAGTGAAGCAA+AGG | - | chr6_3:12285334-12285353 | Msa0940050:five_prime_UTR | 50.0% | |
| TCAATACGACGTCGTGCGAG+AGG | + | chr6_3:12278782-12278801 | None:intergenic | 55.0% | |
| GTTGCGGGTGTACGATAGGA+TGG | - | chr6_3:12278911-12278930 | Msa0940050:intron | 55.0% | |
| GTCAGACACGAAGACGTGTG+CGG | - | chr6_3:12279146-12279165 | Msa0940050:intron | 55.0% | |
| !! | AGCGTTGACCTGATAGCGTG+TGG | - | chr6_3:12279766-12279785 | Msa0940050:CDS | 55.0% |
| CAGTTGGACCACACGCTATC+AGG | + | chr6_3:12279777-12279796 | None:intergenic | 55.0% | |
| !! | AGGAGAGTACTCTCTCTGGC+AGG | - | chr6_3:12280313-12280332 | Msa0940050:intron | 55.0% |
| CTGGCAGGTGTCTTTGACTC+TGG | - | chr6_3:12280328-12280347 | Msa0940050:intron | 55.0% | |
| GTGTGGAATTCAGCTTGCCG+TGG | - | chr6_3:12281627-12281646 | Msa0940050:intron | 55.0% | |
| TGTCCACAAGAGGGGCTTAC+TGG | - | chr6_3:12281691-12281710 | Msa0940050:intron | 55.0% | |
| GCTGCAGAGAAGCTATGGTC+TGG | - | chr6_3:12281815-12281834 | Msa0940050:intron | 55.0% | |
| GTTGGTCCATGCCCACTTCT+TGG | - | chr6_3:12282406-12282425 | Msa0940050:intron | 55.0% | |
| CCCCCTCAGATCAACAAGTG+AGG | + | chr6_3:12282829-12282848 | None:intergenic | 55.0% | |
| TGATCTGAGGGGGCTTCTTC+TGG | - | chr6_3:12282836-12282855 | Msa0940050:intron | 55.0% | |
| AAGGGGAGGAGAACAGTACC+AGG | - | chr6_3:12283577-12283596 | Msa0940050:intron | 55.0% | |
| AGGGGAGGAGAACAGTACCA+GGG | - | chr6_3:12283578-12283597 | Msa0940050:intron | 55.0% | |
| GAGAACAGTACCAGGGGGAA+TGG | - | chr6_3:12283585-12283604 | Msa0940050:intron | 55.0% | |
| GGATGCGCTACCTGAAGCTT+GGG | - | chr6_3:12284362-12284381 | Msa0940050:intron | 55.0% | |
| GATGCGCTACCTGAAGCTTG+GGG | - | chr6_3:12284363-12284382 | Msa0940050:intron | 55.0% | |
| !! | CACCATCTGCAAGAGGTGCT+AGG | + | chr6_3:12284599-12284618 | None:intergenic | 55.0% |
| CTAGCACCTCTTGCAGATGG+TGG | - | chr6_3:12284597-12284616 | Msa0940050:intron | 55.0% | |
| CCTTTCCCACCATCTGCAAG+AGG | + | chr6_3:12284606-12284625 | None:intergenic | 55.0% | |
| !! | CCTCTTGCAGATGGTGGGAA+AGG | - | chr6_3:12284603-12284622 | Msa0940050:intron | 55.0% |
| AGTGCAGGCTCTACACCAGA+AGG | + | chr6_3:12284639-12284658 | None:intergenic | 55.0% | |
| ! | TGTCCAGGTTGGGTATCCGT+TGG | - | chr6_3:12284816-12284835 | Msa0940050:intron | 55.0% |
| GAGTGTCCACGCAGCTAATC+AGG | - | chr6_3:12285133-12285152 | Msa0940050:CDS | 55.0% | |
| ! | TTTGGGCCTGATTAGCTGCG+TGG | + | chr6_3:12285142-12285161 | None:intergenic | 55.0% |
| TACGACGTCGTGCGAGAGGA+AGG | + | chr6_3:12278778-12278797 | None:intergenic | 60.0% | |
| GGGGAGGAGAACAGTACCAG+GGG | - | chr6_3:12283579-12283598 | Msa0940050:intron | 60.0% | |
| GGGAGGAGAACAGTACCAGG+GGG | - | chr6_3:12283580-12283599 | Msa0940050:intron | 60.0% | |
| GGGATGCGCTACCTGAAGCT+TGG | - | chr6_3:12284361-12284380 | Msa0940050:intron | 60.0% | |
| !! | CAGATGGTGGGAAAGGCCAG+TGG | - | chr6_3:12284610-12284629 | Msa0940050:intron | 60.0% |
| AAAGGCCAGTGGCCACCTTC+TGG | - | chr6_3:12284621-12284640 | Msa0940050:intron | 60.0% | |
| CTACACCAGAAGGTGGCCAC+TGG | + | chr6_3:12284629-12284648 | None:intergenic | 60.0% | |
| GCAGGCTCTACACCAGAAGG+TGG | + | chr6_3:12284636-12284655 | None:intergenic | 60.0% | |
| AGGCCGGATCAGATGGTCGC+AGG | + | chr6_3:12278943-12278962 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 12278503 | 12285430 | 12278503 | ID=Msa0940050;Name=Msa0940050 |
| chr6_3 | mRNA | 12278503 | 12285430 | 12278503 | ID=Msa0940050-mRNA-1;Parent=Msa0940050;Name=Msa0940050-mRNA-1;_AED=0.03;_eAED=0.03;_QI=219|0.7|0.72|0.90|1|0.90|11|0|456 |
| chr6_3 | exon | 12278503 | 12278859 | 12278503 | ID=Msa0940050-mRNA-1:exon:4042;Parent=Msa0940050-mRNA-1 |
| chr6_3 | exon | 12279009 | 12279110 | 12279009 | ID=Msa0940050-mRNA-1:exon:4041;Parent=Msa0940050-mRNA-1 |
| chr6_3 | exon | 12279196 | 12279462 | 12279196 | ID=Msa0940050-mRNA-1:exon:4040;Parent=Msa0940050-mRNA-1 |
| chr6_3 | exon | 12279549 | 12279666 | 12279549 | ID=Msa0940050-mRNA-1:exon:4039;Parent=Msa0940050-mRNA-1 |
| chr6_3 | exon | 12279755 | 12279808 | 12279755 | ID=Msa0940050-mRNA-1:exon:4038;Parent=Msa0940050-mRNA-1 |
| chr6_3 | exon | 12281035 | 12281130 | 12281035 | ID=Msa0940050-mRNA-1:exon:4037;Parent=Msa0940050-mRNA-1 |
| chr6_3 | exon | 12282054 | 12282111 | 12282054 | ID=Msa0940050-mRNA-1:exon:4036;Parent=Msa0940050-mRNA-1 |
| chr6_3 | exon | 12282221 | 12282293 | 12282221 | ID=Msa0940050-mRNA-1:exon:4035;Parent=Msa0940050-mRNA-1 |
| chr6_3 | exon | 12282456 | 12282501 | 12282456 | ID=Msa0940050-mRNA-1:exon:4034;Parent=Msa0940050-mRNA-1 |
| chr6_3 | exon | 12284904 | 12285004 | 12284904 | ID=Msa0940050-mRNA-1:exon:4033;Parent=Msa0940050-mRNA-1 |
| chr6_3 | exon | 12285116 | 12285430 | 12285116 | ID=Msa0940050-mRNA-1:exon:4032;Parent=Msa0940050-mRNA-1 |
| chr6_3 | five_prime_UTR | 12285212 | 12285430 | 12285212 | ID=Msa0940050-mRNA-1:five_prime_utr;Parent=Msa0940050-mRNA-1 |
| chr6_3 | CDS | 12285116 | 12285211 | 12285116 | ID=Msa0940050-mRNA-1:cds;Parent=Msa0940050-mRNA-1 |
| chr6_3 | CDS | 12284904 | 12285004 | 12284904 | ID=Msa0940050-mRNA-1:cds;Parent=Msa0940050-mRNA-1 |
| chr6_3 | CDS | 12282456 | 12282501 | 12282456 | ID=Msa0940050-mRNA-1:cds;Parent=Msa0940050-mRNA-1 |
| chr6_3 | CDS | 12282221 | 12282293 | 12282221 | ID=Msa0940050-mRNA-1:cds;Parent=Msa0940050-mRNA-1 |
| chr6_3 | CDS | 12282054 | 12282111 | 12282054 | ID=Msa0940050-mRNA-1:cds;Parent=Msa0940050-mRNA-1 |
| chr6_3 | CDS | 12281035 | 12281130 | 12281035 | ID=Msa0940050-mRNA-1:cds;Parent=Msa0940050-mRNA-1 |
| chr6_3 | CDS | 12279755 | 12279808 | 12279755 | ID=Msa0940050-mRNA-1:cds;Parent=Msa0940050-mRNA-1 |
| chr6_3 | CDS | 12279549 | 12279666 | 12279549 | ID=Msa0940050-mRNA-1:cds;Parent=Msa0940050-mRNA-1 |
| chr6_3 | CDS | 12279196 | 12279462 | 12279196 | ID=Msa0940050-mRNA-1:cds;Parent=Msa0940050-mRNA-1 |
| chr6_3 | CDS | 12279009 | 12279110 | 12279009 | ID=Msa0940050-mRNA-1:cds;Parent=Msa0940050-mRNA-1 |
| chr6_3 | CDS | 12278503 | 12278859 | 12278503 | ID=Msa0940050-mRNA-1:cds;Parent=Msa0940050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
