AlfalfaGEDB | Msa0338960

M. sativa cultivar zhongmu-4 / Msa0338960

KEGG: K11642|K11643|K20091
GO: GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006342 GO:0006344 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0040029 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0338960	XP_024632508.1	96.469	963	29	2	1	963	1	958	0.0	1887

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0338960	sp\|Q9M658\|MOM1_ARATH	31.529	942	509	30	38	945	30	869	2.14e-89	317

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0188850	Msa0338960	0.810353	1.202095e-50	-8.615850e-47
Msa0193530	Msa0338960	0.845041	5.198680e-59	-8.615850e-47
Msa0222160	Msa0338960	0.928384	3.114407e-92	-8.615850e-47
Msa0263680	Msa0338960	0.923920	1.404661e-89	-8.615850e-47
Msa0301590	Msa0338960	0.877134	8.016738e-69	-8.615850e-47
Msa0338960	Msa0383950	0.829491	4.997339e-55	-8.615850e-47
Msa0338960	Msa0427030	0.806283	8.868825e-50	-8.615850e-47
Msa0338960	Msa0467310	0.835704	1.437034e-56	-8.615850e-47
Msa0338960	Msa0470630	0.826514	2.602546e-54	-8.615850e-47
Msa0338960	Msa0554670	0.813920	2.004497e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0338960	MtrunA17_Chr2g0327001	89.689	708	21	2	1	658	1	706	0.0	1249
Msa0338960	MtrunA17_Chr2g0326991	93.538	325	17	2	643	963	12	336	0.0	635
Msa0338960	MtrunA17_Chr7g0264371	40.749	454	240	5	495	944	457	885	1.66e-93	325
Msa0338960	MtrunA17_Chr4g0052341	31.198	359	210	9	513	857	949	1284	5.26e-37	152
Msa0338960	MtrunA17_Chr3g0137091	27.715	267	163	7	526	787	515	756	7.94e-23	105
Msa0338960	MtrunA17_Chr4g0066741	29.897	291	162	11	515	796	384	641	1.03e-22	105
Msa0338960	MtrunA17_Chr5g0442141	27.642	246	160	4	542	787	851	1078	1.10e-22	105
Msa0338960	MtrunA17_Chr3g0095091	28.862	246	157	5	542	787	805	1032	2.36e-22	104
Msa0338960	MtrunA17_Chr1g0205891	29.412	221	128	5	580	800	650	842	9.35e-21	98.6
Msa0338960	MtrunA17_Chr5g0394201	28.054	221	130	5	580	800	637	828	3.98e-20	96.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0338960	AT1G08060.1	31.529	942	509	30	38	945	30	869	2.18e-90	317
Msa0338960	AT1G08060.2	31.529	942	509	30	38	945	30	869	2.18e-90	317
Msa0338960	AT1G08060.3	31.495	943	509	31	38	945	30	870	1.69e-89	314
Msa0338960	AT5G44800.1	32.166	314	182	8	507	812	887	1177	1.24e-37	154
Msa0338960	AT2G25170.1	28.195	266	163	7	526	787	499	740	2.64e-24	110
Msa0338960	AT2G25170.4	28.195	266	163	7	526	787	499	740	2.64e-24	110
Msa0338960	AT2G25170.2	28.195	266	163	7	526	787	516	757	3.52e-24	110
Msa0338960	AT2G25170.3	28.195	266	163	7	526	787	525	766	4.48e-24	110
Msa0338960	AT4G31900.1	28.731	268	162	6	548	812	456	697	1.69e-23	108
Msa0338960	AT4G31900.3	28.731	268	162	6	548	812	456	697	1.76e-23	108

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Find 216 sgRNAs with CRISPR-Local

Find 602 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCACATCCCAATGTAT+CGG	0.555771	2_4:-59692076	Msa0338960:CDS
AAACCAGAAGAAAGTCTGTA+AGG	0.485038	2_4:-59691942	Msa0338960:CDS
AAAGAGAGACCGATACATCA+GGG	0.640898	2_4:+59691684	None:intergenic
AAAGTTACCCAATGGAATCA+AGG	0.551364	2_4:-59684960	Msa0338960:CDS
AAATGACCGCCCTGATGTAT+CGG	0.537626	2_4:-59691693	Msa0338960:CDS
AACAAAGAAGTATCGAAGAA+CGG	0.629825	2_4:-59691231	Msa0338960:CDS
AACAATGCTGGTCTTGGTGG+GGG	0.523275	2_4:-59690652	Msa0338960:CDS
AACACCAAAGTACCTTTCTT+TGG	0.302134	2_4:+59691655	None:intergenic
AACCAGAAGAAAGTCTGTAA+GGG	0.606060	2_4:-59691941	Msa0338960:CDS
AACTGTCAATCTTCAAGTCG+GGG	0.588085	2_4:-59685457	Msa0338960:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTTCGAAGCAAAACGAATA+CGG	+	chr2_4:59685186-59685205	None:intergenic	30.0%
AAGGATTCATGTAATTAGGT+TGG	-	chr2_4:59685950-59685969	Msa0338960:intron	30.0%
TAATATTATCAGAATGCCCA+AGG	+	chr2_4:59687223-59687242	None:intergenic	30.0%
TAATATTAGCAAGCCAAATC+AGG	-	chr2_4:59687235-59687254	Msa0338960:intron	30.0%
TTTAGATAACTCGTCAATCT+TGG	+	chr2_4:59687282-59687301	None:intergenic	30.0%
AAGATTGACGAGTTATCTAA+AGG	-	chr2_4:59687281-59687300	Msa0338960:intron	30.0%
TTTAGACAACTCATCAATCT+TGG	+	chr2_4:59687441-59687460	None:intergenic	30.0%
AAGATTGATGAGTTGTCTAA+AGG	-	chr2_4:59687440-59687459	Msa0338960:intron	30.0%
TTAGATGGTATAAATGAACC+AGG	+	chr2_4:59687755-59687774	None:intergenic	30.0%
TGTTGTTAAATGGCAGTAAA+TGG	-	chr2_4:59688077-59688096	Msa0338960:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	59684913	59693657	59684913	ID=Msa0338960;Name=Msa0338960
chr2_4	mRNA	59684913	59693657	59684913	ID=Msa0338960-mRNA-1;Parent=Msa0338960;Name=Msa0338960-mRNA-1;_AED=0.03;_eAED=0.03;_QI=155\|1\|1\|1\|0.85\|0.75\|8\|39\|963
chr2_4	exon	59684913	59685869	59684913	ID=Msa0338960-mRNA-1:exon:18558;Parent=Msa0338960-mRNA-1
chr2_4	exon	59686949	59687152	59686949	ID=Msa0338960-mRNA-1:exon:18557;Parent=Msa0338960-mRNA-1
chr2_4	exon	59688641	59688907	59688641	ID=Msa0338960-mRNA-1:exon:18556;Parent=Msa0338960-mRNA-1
chr2_4	exon	59688993	59689067	59688993	ID=Msa0338960-mRNA-1:exon:18555;Parent=Msa0338960-mRNA-1
chr2_4	exon	59689330	59689381	59689330	ID=Msa0338960-mRNA-1:exon:18554;Parent=Msa0338960-mRNA-1
chr2_4	exon	59690499	59691354	59690499	ID=Msa0338960-mRNA-1:exon:18553;Parent=Msa0338960-mRNA-1
chr2_4	exon	59691668	59692218	59691668	ID=Msa0338960-mRNA-1:exon:18552;Parent=Msa0338960-mRNA-1
chr2_4	exon	59693534	59693657	59693534	ID=Msa0338960-mRNA-1:exon:18551;Parent=Msa0338960-mRNA-1
chr2_4	five_prime_UTR	59693534	59693657	59693534	ID=Msa0338960-mRNA-1:five_prime_utr;Parent=Msa0338960-mRNA-1
chr2_4	five_prime_UTR	59692188	59692218	59692188	ID=Msa0338960-mRNA-1:five_prime_utr;Parent=Msa0338960-mRNA-1
chr2_4	CDS	59691668	59692187	59691668	ID=Msa0338960-mRNA-1:cds;Parent=Msa0338960-mRNA-1
chr2_4	CDS	59690499	59691354	59690499	ID=Msa0338960-mRNA-1:cds;Parent=Msa0338960-mRNA-1
chr2_4	CDS	59689330	59689381	59689330	ID=Msa0338960-mRNA-1:cds;Parent=Msa0338960-mRNA-1
chr2_4	CDS	59688993	59689067	59688993	ID=Msa0338960-mRNA-1:cds;Parent=Msa0338960-mRNA-1
chr2_4	CDS	59688641	59688907	59688641	ID=Msa0338960-mRNA-1:cds;Parent=Msa0338960-mRNA-1
chr2_4	CDS	59686949	59687152	59686949	ID=Msa0338960-mRNA-1:cds;Parent=Msa0338960-mRNA-1
chr2_4	CDS	59684952	59685869	59684952	ID=Msa0338960-mRNA-1:cds;Parent=Msa0338960-mRNA-1
chr2_4	three_prime_UTR	59684913	59684951	59684913	ID=Msa0338960-mRNA-1:three_prime_utr;Parent=Msa0338960-mRNA-1

Gene Sequence

>Msa0338960

ATGGTAAAAAGTACTCGTTCTAGTCAAAAGGCCAAGGATGAAGAAAATAATAATGGGAGGGTGACCCGAAGCAGCGAGAAAGCAAAAATAAAAGCACATCCCAATGTATCGGATACAGCTGGTATTAGAAAGTCTTCTAGAGAAAAACCATCAAAGATAATTGCAACCTCTTCAAGTACTCAGAAGTCTGAGCAAGTAGAGAAGGGAACACTGCCAGCTCCTGAAACCAGAAGAAAGTCTGTAAGGGTCGAGAAAATGAAAACACCAACGCCAAGTCCTTTGACGAGATCTGGCAAAACTAGGAATCATTCTTTTTCTGGTCCTTCAGATTCTAAAAGTGCAGGTTCTCTTGGTTCAATTTCGAGACAGAAGCTACAAAAAGAGAAGAGTGTGAAGCAATTGACATTTGAAGCCAAGGAAGTGAATGAAAATGAGGAACACAACGTGGAAAGTTCCCAGGTGAAAAGAAAGAAAATGACCGCCCTGATGTATCGGTCTCTCTTTACACAACCAAAGAAAGATTGCCTTGGGCATTCTGATAATATTAGCAAGCCAAATCAGGAAGGTGACAACAGTAGTGGAGCCAAGATTGACGAGTTATCTAAAGGAAGTTGTTCAGATAACAAAGAAGTATCGAAGAACGGTACACTGCCATCGGAAGATGCCACAGCAAAAGAGACCACAGTTGACTCTAGGATTGGCGATAAAAGGTGCCAAAGCAAAGGTGACAATAGTAGTGGAGCCAAGATTGATGAGTTGTCTAAAGGAAGTTGTTCAGACAATGAAGAAGTCTCGAAGAATGGTACACTTCCATTCGAAGATGGGAAAGCAAAAGAAACCAGAGTTGACTCTAGGACCGACGAGCCAAGGTGCCAAAGCAAAGCTGACAACAGTATTGGAGCCAAGATTGATGAGTTATCTAAAGGAAGTTGTTCAGATAATAAAGAAGTCTCAAAGAATGGTACACTGACATCTGAAGATGCCAAAGCAAAAGAGACCAGAGTTAACTCTAGGTTGAGTGGGCCTATGACAGATTTAGCAGAAAATTGTGCGACTCCTGGTTCATTTATACCATCTAACACCCCAACTTATGAGACTAGTGTGGTGCCCAGAAGAGGACAGCCTGATTGCTGCGAAGAGGAGACATTACGAACATTAGTGTCAGGAGATTCTGTATTCGATGATGATGACTTGGTCAGTAACAATGCTGGTCTTGGTGGGGGTGAAAAATTAGCACCTTCTAAGAGAAAGGCAATCACTGTGGACATTGATTCAAATGTTCCTTCCTCATTATCTAAAGGAGACAGAAGCAACTTGATCCCTGATGCTCTCCCTTCAAAACTAGGTGGCAACGAGTCATGTTCCAAACGAATAAGGTTGGATTTTAATCCTACAGCCGAGGAGTCGCGTAACCCATGTGCAACTGAGGACATAGATGTCATTGAGGAAACCGTGCAGCAGAAGGATAAGAGCGACCACGCAAGTGGAACTGGACACCTTAAGGGTAGCACTGTGGAAGACAAAAATATTCATGCTCTTCTTGATGGTCAAAGTGTTGTTCATCCGAAGGAGAAAGTGTCAAGTGATATTGCAAACAGATGCAAGTCGGACTCCTATAAGTTGGTTGAGTATTGGGTTCCTGTACAGATATCTAATGTGCAGCTTGAGCAGTATTGTAATACTTTACTTTCAAATGCTTCATTTCTTTGCTCGTCGCCAAAGATTGATAGTGTTGGGGCCATTCGTGATGTCCTTATTTCAATCCGGAAGTGTTGTAATCATCCCTATATTATTGAAGAATCCCTGCAACCTTTACTACTAAAGGGCCTTGAAGAAGTTGAGTATCCGAGTCAAAAAGAAAAAGCCGTTGCATATCTGAATGTTGGAATAAAAGCAAGTGGCAAGCTTCAACTACTTGATTCAATGCTCACAGAGTTGAGAAAAAATAAATTAAGGGCACTCATACTTTTTCAGCCAATTGGAGTTTCTGGAAAGACTTCAATAGTAGATATTTTGGATGACTTCCTGCGACAAAGATTTGGCGAAGATTCGTATGAAAGAATTGATAATTGTCTTACGGCTTCCAAGAAGCAAGCTGCCACGAAGATATTTAACGACAAGAATAACAAGCGATTTTTCTTTTTGATGGAAACAAGTGCCTGCCATCCTAGCATAAAATTGTCATCAATTGACGCTATTATTATATTTGACAGTGACTGGAACCCGATGAATGATATAAGATCCCTTCAGAAGTTGACACTTGATTCACAGTTTGAATCGATCAAAACATTCCGTTTATATTCACCTTTCACTGTTGAAGAGAAAGCTTTGATTCTCTCTAGGCAAGGTAAGACCCTGGACATCAACTGTCAATCTTCAAGTCGGGGTCTCAGTCATACTCTCTTGATGTGGGGCGCAGTTCATCTTTTTGACGAGTTGAGAGTTTTCCATGACGGTGCAACTTCCACGTCAAATCTAAAACCACTGCTGGAAGAAACAGTTTCACAGTTCTCATCCTGTCTAGCTGATGTTGGTGAAGATTCTGACACAAGCAACTGCTCAATTTTATTGAAAGTCCAGCAACATGGAGGAGCCTACCTTGCAAATTCTCCTTTGTTTGGTGAGCAGGAATTTAGGTCGCCGGATGAAGAGGTACCACAAACGTTTTGGAATAATCTGTTGGTGGGGAGACAGTTTCAATGGAAGTACTCATGTGGTTCATCTCAGCGGAGCCGGAGGAGAGTTCAGCCTTTTAATAATTTGGCAGGTGGGACCGACCATGTGAATGAAGGCACAGCAAAGAAGCGCTTGAAAGTAAGCAACACTAATGTTGATCAGCCTTCATCAAAATCTGTAGGTGAAAAGTTACCCAATGGAATCAAGGCAGGTTAG

Protein sequence

>Msa0338960

MVKSTRSSQKAKDEENNNGRVTRSSEKAKIKAHPNVSDTAGIRKSSREKPSKIIATSSSTQKSEQVEKGTLPAPETRRKSVRVEKMKTPTPSPLTRSGKTRNHSFSGPSDSKSAGSLGSISRQKLQKEKSVKQLTFEAKEVNENEEHNVESSQVKRKKMTALMYRSLFTQPKKDCLGHSDNISKPNQEGDNSSGAKIDELSKGSCSDNKEVSKNGTLPSEDATAKETTVDSRIGDKRCQSKGDNSSGAKIDELSKGSCSDNEEVSKNGTLPFEDGKAKETRVDSRTDEPRCQSKADNSIGAKIDELSKGSCSDNKEVSKNGTLTSEDAKAKETRVNSRLSGPMTDLAENCATPGSFIPSNTPTYETSVVPRRGQPDCCEEETLRTLVSGDSVFDDDDLVSNNAGLGGGEKLAPSKRKAITVDIDSNVPSSLSKGDRSNLIPDALPSKLGGNESCSKRIRLDFNPTAEESRNPCATEDIDVIEETVQQKDKSDHASGTGHLKGSTVEDKNIHALLDGQSVVHPKEKVSSDIANRCKSDSYKLVEYWVPVQISNVQLEQYCNTLLSNASFLCSSPKIDSVGAIRDVLISIRKCCNHPYIIEESLQPLLLKGLEEVEYPSQKEKAVAYLNVGIKASGKLQLLDSMLTELRKNKLRALILFQPIGVSGKTSIVDILDDFLRQRFGEDSYERIDNCLTASKKQAATKIFNDKNNKRFFFLMETSACHPSIKLSSIDAIIIFDSDWNPMNDIRSLQKLTLDSQFESIKTFRLYSPFTVEEKALILSRQGKTLDINCQSSSRGLSHTLLMWGAVHLFDELRVFHDGATSTSNLKPLLEETVSQFSSCLADVGEDSDTSNCSILLKVQQHGGAYLANSPLFGEQEFRSPDEEVPQTFWNNLLVGRQFQWKYSCGSSQRSRRRVQPFNNLAGGTDHVNEGTAKKRLKVSNTNVDQPSSKSVGEKLPNGIKAG*