Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1353550 | XP_039684051.1 | 96.875 | 224 | 7 | 0 | 1 | 224 | 1199 | 1422 | 4.29e-138 | 439 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1353550 | sp|F4JD14|BCHC1_ARATH | 72.430 | 214 | 58 | 1 | 1 | 213 | 778 | 991 | 5.05e-94 | 304 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1353550 | G7L1D4 | 96.875 | 224 | 7 | 0 | 1 | 224 | 1199 | 1422 | 2.39e-138 | 439 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0035320 | Msa1353550 | 0.859705 | 3.437816e-63 | -8.615850e-47 |
Msa0089980 | Msa1353550 | 0.808816 | 2.572013e-50 | -8.615850e-47 |
Msa0090010 | Msa1353550 | 0.801928 | 7.143337e-49 | -8.615850e-47 |
Msa0116270 | Msa1353550 | 0.854960 | 8.688829e-62 | -8.615850e-47 |
Msa1353550 | Msa1372790 | 0.808916 | 2.448581e-50 | -8.615850e-47 |
Msa1353550 | Msa1377810 | 0.852995 | 3.200600e-61 | -8.615850e-47 |
Msa1353550 | Msa1403710 | 0.806008 | 1.013323e-49 | -8.615850e-47 |
Msa1353550 | Msa1409500 | 0.820307 | 7.351283e-53 | -8.615850e-47 |
Msa1353550 | Msa1460580 | 0.801835 | 7.465291e-49 | -8.615850e-47 |
Msa1353550 | Msa1464370 | 0.836145 | 1.110979e-56 | -8.615850e-47 |
Msa1353550 | Msa1467000 | 0.821108 | 4.811577e-53 | -8.615850e-47 |
Msa0626270 | Msa1353550 | 0.827853 | 1.243494e-54 | -8.615850e-47 |
Msa0691340 | Msa1353550 | 0.813071 | 3.081769e-51 | -8.615850e-47 |
Msa0705500 | Msa1353550 | 0.800444 | 1.437475e-48 | -8.615850e-47 |
Msa0749400 | Msa1353550 | 0.808829 | 2.555283e-50 | -8.615850e-47 |
Msa0784220 | Msa1353550 | 0.804709 | 1.896246e-49 | -8.615850e-47 |
Msa1254620 | Msa1353550 | 0.808174 | 3.525751e-50 | -8.615850e-47 |
Msa1267040 | Msa1353550 | 0.805443 | 1.331644e-49 | -8.615850e-47 |
Msa1267170 | Msa1353550 | 0.800406 | 1.462748e-48 | -8.615850e-47 |
Msa1336030 | Msa1353550 | 0.821323 | 4.292781e-53 | -8.615850e-47 |
Msa1342270 | Msa1353550 | 0.803752 | 3.001086e-49 | -8.615850e-47 |
Msa0379610 | Msa1353550 | 0.807127 | 5.882465e-50 | -8.615850e-47 |
Msa0383950 | Msa1353550 | 0.802130 | 6.491434e-49 | -8.615850e-47 |
Msa0467310 | Msa1353550 | 0.800635 | 1.313780e-48 | -8.615850e-47 |
Msa0478230 | Msa1353550 | 0.810366 | 1.194831e-50 | -8.615850e-47 |
Msa1027780 | Msa1353550 | 0.801466 | 8.884314e-49 | -8.615850e-47 |
Msa1065430 | Msa1353550 | 0.801237 | 9.898502e-49 | -8.615850e-47 |
Msa1095790 | Msa1353550 | 0.833013 | 6.803610e-56 | -8.615850e-47 |
Msa0263680 | Msa1353550 | 0.822468 | 2.331192e-53 | -8.615850e-47 |
Msa0268110 | Msa1353550 | 0.800097 | 1.690827e-48 | -8.615850e-47 |
Msa0302890 | Msa1353550 | 0.824525 | 7.698064e-54 | -8.615850e-47 |
Msa0304100 | Msa1353550 | 0.806058 | 9.891916e-50 | -8.615850e-47 |
Msa0573110 | Msa1353550 | 0.801867 | 7.352741e-49 | -8.615850e-47 |
Msa0940050 | Msa1353550 | 0.810335 | 1.213084e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1353550 | MtrunA17_Chr7g0246241 | 96.875 | 224 | 7 | 0 | 1 | 224 | 1199 | 1422 | 4.60e-142 | 439 |
Msa1353550 | MtrunA17_Chr8g0351361 | 81.081 | 148 | 25 | 2 | 76 | 222 | 34 | 179 | 1.11e-63 | 214 |
Msa1353550 | MtrunA17_Chr8g0351351 | 78.667 | 75 | 16 | 0 | 1 | 75 | 556 | 630 | 2.90e-38 | 140 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1353550 | AT3G60920.1 | 72.430 | 214 | 58 | 1 | 1 | 213 | 778 | 991 | 5.14e-95 | 304 |
Msa1353550 | AT3G60920.2 | 72.430 | 214 | 58 | 1 | 1 | 213 | 829 | 1042 | 6.19e-95 | 304 |
Msa1353550 | AT2G45540.1 | 81.726 | 197 | 36 | 0 | 1 | 197 | 1209 | 1405 | 7.43e-95 | 304 |
Msa1353550 | AT2G45540.3 | 81.726 | 197 | 36 | 0 | 1 | 197 | 1209 | 1405 | 7.43e-95 | 304 |
Msa1353550 | AT2G45540.6 | 81.726 | 197 | 36 | 0 | 1 | 197 | 1209 | 1405 | 7.43e-95 | 304 |
Msa1353550 | AT2G45540.5 | 81.726 | 197 | 36 | 0 | 1 | 197 | 1209 | 1405 | 7.43e-95 | 304 |
Msa1353550 | AT2G45540.4 | 81.726 | 197 | 36 | 0 | 1 | 197 | 1209 | 1405 | 7.43e-95 | 304 |
Msa1353550 | AT2G45540.2 | 81.726 | 197 | 36 | 0 | 1 | 197 | 1264 | 1460 | 8.77e-95 | 304 |
Find 56 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATCGTTGCCTATATTTAAA+AGG | 0.228601 | tig0013664:-3465 | Msa1353550:CDS |
GGAATGGCCTGAATGGATTT+TGG | 0.249701 | tig0013664:-5895 | Msa1353550:CDS |
GTTTGCTCTGCAACCGTAAA+TGG | 0.263129 | tig0013664:+2961 | Msa1353550:intergenic |
GACGTTGAGTGATCGCTTAT+TGG | 0.277918 | tig0013664:+2885 | Msa1353550:intergenic |
TGCCCAGTTGTCTGTGGCCT+TGG | 0.278942 | tig0013664:-3021 | Msa1353550:CDS |
TGCTTGTTGAAGACCATTTA+CGG | 0.300538 | tig0013664:-2974 | Msa1353550:CDS |
GCAGAGTGGCTTTCTATTGT+AGG | 0.306791 | tig0013664:-4753 | Msa1353550:CDS |
CTTTGCCGCTAGAGAATTGC+AGG | 0.327324 | tig0013664:-3419 | Msa1353550:CDS |
AGTGCTCTAGCATGATAATT+AGG | 0.336815 | tig0013664:+5636 | Msa1353550:intergenic |
ATATTTAAAAGGAGACTCTT+AGG | 0.339054 | tig0013664:-3454 | Msa1353550:CDS |
TAACCTTCCATCCATCCTTT+TGG | 0.352570 | tig0013664:+5606 | Msa1353550:intergenic |
CAACCAAGGCCACAGACAAC+TGG | 0.371483 | tig0013664:+3018 | Msa1353550:intergenic |
CGCTAGAGAATTGCAGGTTC+AGG | 0.376970 | tig0013664:-3413 | Msa1353550:intron |
GAGACTCTTAGGCAGCTTGT+TGG | 0.433547 | tig0013664:-3443 | Msa1353550:CDS |
AGGATTTCCAAAATCCATTC+AGG | 0.442759 | tig0013664:+5888 | Msa1353550:intergenic |
ATTATTGCTGCAGCTGCGGC+TGG | 0.452497 | tig0013664:-3098 | Msa1353550:CDS |
TAATTAGGAAGTTATGAATC+AGG | 0.453464 | tig0013664:+5651 | Msa1353550:intergenic |
TGCGGCTGGTGTTGCTGCTG+AGG | 0.457617 | tig0013664:-3084 | Msa1353550:CDS |
TTACCTCATAGCTTGAGATC+AGG | 0.458647 | tig0013664:+5868 | Msa1353550:intergenic |
GTTGAATCAGACAATTTGCT+TGG | 0.463930 | tig0013664:+5695 | Msa1353550:intergenic |
ACATGGAGGAATGGCCTGAA+TGG | 0.466037 | tig0013664:-5902 | Msa1353550:CDS |
GCCTCAGCCTTAGCATCTGT+TGG | 0.479947 | tig0013664:+3053 | Msa1353550:intergenic |
GCACAGGGGAACAGCGAGTA+AGG | 0.481282 | tig0013664:-4722 | Msa1353550:intron |
GCGGCTGGTGTTGCTGCTGA+GGG | 0.490555 | tig0013664:-3083 | Msa1353550:CDS |
AGAGCACTCAATGCGCCAAA+AGG | 0.490987 | tig0013664:-5621 | Msa1353550:CDS |
TACAAAGTAGTAAGTGGAGA+TGG | 0.494605 | tig0013664:+2909 | Msa1353550:intergenic |
AGGGTTTCCGCCTGAGCCAC+CGG | 0.498214 | tig0013664:+2807 | Msa1353550:intergenic |
CACTCAATGCGCCAAAAGGA+TGG | 0.504036 | tig0013664:-5617 | Msa1353550:CDS |
AGTTCACTATCCGGTGGCTC+AGG | 0.506905 | tig0013664:-2817 | Msa1353550:CDS |
GAGCCACCGGATAGTGAACT+TGG | 0.529126 | tig0013664:+2820 | Msa1353550:intergenic |
GAGTGGCTTTCTATTGTAGG+TGG | 0.534120 | tig0013664:-4750 | Msa1353550:CDS |
TCAAATTATTGCTGCAGCTG+CGG | 0.534498 | tig0013664:-3102 | Msa1353550:CDS |
ATTGTAGGTGGATCTAGCAC+AGG | 0.543333 | tig0013664:-4738 | Msa1353550:CDS |
AATCCTGATCTCAAGCTATG+AGG | 0.552318 | tig0013664:-5871 | Msa1353550:intron |
CAATGCGCCAAAAGGATGGA+TGG | 0.552448 | tig0013664:-5613 | Msa1353550:CDS |
ATTGGATACAAAGTAGTAAG+TGG | 0.553379 | tig0013664:+2903 | Msa1353550:intergenic |
ATTGTCTCCAACAGATGCTA+AGG | 0.558910 | tig0013664:-3060 | Msa1353550:CDS |
TCCAACAGATGCTAAGGCTG+AGG | 0.567281 | tig0013664:-3054 | Msa1353550:CDS |
TTGTCTGATTCAACAAGTGT+CGG | 0.570685 | tig0013664:-5686 | Msa1353550:CDS |
AACCAAGGCCACAGACAACT+GGG | 0.572160 | tig0013664:+3019 | Msa1353550:intergenic |
GTATGATAAACATGGAGGAA+TGG | 0.576034 | tig0013664:-5911 | Msa1353550:CDS |
TCACTATCCGGTGGCTCAGG+CGG | 0.576338 | tig0013664:-2814 | Msa1353550:CDS |
GGACAACCAAGTTCACTATC+CGG | 0.577476 | tig0013664:-2826 | Msa1353550:CDS |
GCGCCAAAAGGATGGATGGA+AGG | 0.601223 | tig0013664:-5609 | Msa1353550:intron |
TAATGCTGCCCAGTTGTCTG+TGG | 0.618368 | tig0013664:-3027 | Msa1353550:CDS |
CAACAATTCATTGTGCAGAG+TGG | 0.630196 | tig0013664:-4767 | Msa1353550:CDS |
ACTATAAGCATACATCTAGA+GGG | 0.631737 | tig0013664:+2788 | Msa1353550:intergenic |
TAGAAACAGTATGATAAACA+TGG | 0.641693 | tig0013664:-5919 | Msa1353550:CDS |
CACAATGGCATTCTCAACCA+AGG | 0.647176 | tig0013664:+3004 | Msa1353550:intergenic |
CTGAACCTGCAATTCTCTAG+CGG | 0.648901 | tig0013664:+3414 | Msa1353550:intergenic |
AACAAGCATAAGTATCACAA+TGG | 0.655607 | tig0013664:+2989 | Msa1353550:intergenic |
TTGTAGGTGGATCTAGCACA+GGG | 0.661961 | tig0013664:-4737 | Msa1353550:CDS |
CAACCAAGTTCACTATCCGG+TGG | 0.697535 | tig0013664:-2823 | Msa1353550:CDS |
CGAGTCAACAGAAGAAGTTG+CGG | 0.698024 | tig0013664:-2847 | Msa1353550:CDS |
AAACAGTATGATAAACATGG+AGG | 0.718345 | tig0013664:-5916 | Msa1353550:CDS |
TGTAGGTGGATCTAGCACAG+GGG | 0.834076 | tig0013664:-4736 | Msa1353550:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATATAATCATTCTTTTTT+TGG | - | tig0013664:5251-5270 | Msa1353550:intron | 10.0% |
!!! | TATATAATCATTCTTTTTTT+GGG | - | tig0013664:5252-5271 | Msa1353550:intron | 10.0% |
!! | ATTTCAAAACAAAAATAATT+TGG | + | tig0013664:5473-5492 | Msa1353550:intergenic | 10.0% |
!!! | TAAGTTTTTTTTTTATTCAC+CGG | - | tig0013664:3410-3429 | Msa1353550:intron | 15.0% |
!! | TAAAGAAAAAAGTAAAACTT+TGG | - | tig0013664:3514-3533 | Msa1353550:intron | 15.0% |
!! | AAAGAAAAAAGTAAAACTTT+GGG | - | tig0013664:3515-3534 | Msa1353550:intron | 15.0% |
!!! | GTTAGTTTTTTTTTTTTGAA+TGG | - | tig0013664:4357-4376 | Msa1353550:intron | 15.0% |
!! | ATTCTTCCAATACAATAAAA+GGG | + | tig0013664:3483-3502 | Msa1353550:intergenic | 20.0% |
!! | AATTCTTCCAATACAATAAA+AGG | + | tig0013664:3484-3503 | Msa1353550:intergenic | 20.0% |
!!! | GTTTTACTTTTTTCTTTACT+TGG | + | tig0013664:3512-3531 | Msa1353550:intergenic | 20.0% |
!! | AAGAAAAAAGTAAAACTTTG+GGG | - | tig0013664:3516-3535 | Msa1353550:intron | 20.0% |
!! | ATGTTATCAATATGACAATT+CGG | + | tig0013664:3628-3647 | Msa1353550:intergenic | 20.0% |
!! | ATTTACTAATCACATAATTG+TGG | - | tig0013664:3768-3787 | Msa1353550:intron | 20.0% |
!!! | CTTTTACTATCTTTTTAGTA+TGG | - | tig0013664:4177-4196 | Msa1353550:intron | 20.0% |
!!! | CAAATTTTAGTTGTTAATGT+TGG | - | tig0013664:4380-4399 | Msa1353550:intron | 20.0% |
!! | AAAAATATTCTGTCAAGTAA+TGG | + | tig0013664:4567-4586 | Msa1353550:intergenic | 20.0% |
!!! | TTTTCCTGTATATATTTTCT+TGG | + | tig0013664:4724-4743 | Msa1353550:intergenic | 20.0% |
!! | GTAAAACCATTATCAATAAA+AGG | + | tig0013664:4969-4988 | Msa1353550:intergenic | 20.0% |
!! | AAAAATTGTAAACTATTGCT+AGG | + | tig0013664:5228-5247 | Msa1353550:intergenic | 20.0% |
!!! | TAGCAATAGTTTACAATTTT+TGG | - | tig0013664:5227-5246 | Msa1353550:intron | 20.0% |
!! | AAGAAAGAATATCATTACAA+TGG | + | tig0013664:5432-5451 | Msa1353550:intergenic | 20.0% |
!! | TCAAAACAAAAATAATTTGG+TGG | + | tig0013664:5470-5489 | Msa1353550:intergenic | 20.0% |
!!! | TTTGAAATGTATATAACACT+TGG | - | tig0013664:5485-5504 | Msa1353550:intron | 20.0% |
!! | TTGAAATGTATATAACACTT+GGG | - | tig0013664:5486-5505 | Msa1353550:intron | 20.0% |
!!! | ATCATTTTAGCATATGATTT+TGG | + | tig0013664:5552-5571 | Msa1353550:intergenic | 20.0% |
!!! | ATCATACTGTTTCTATTTTC+AGG | + | tig0013664:2839-2858 | Msa0991390:intergenic | 25.0% |
! | TAGAAACAGTATGATAAACA+TGG | - | tig0013664:2844-2863 | Msa1353550:CDS | 25.0% |
! | ACAAATAACATACAAGAAGT+TGG | + | tig0013664:2982-3001 | Msa1353550:intergenic | 25.0% |
!! | ACTTCTTGTATGTTATTTGT+TGG | - | tig0013664:2982-3001 | Msa1353550:CDS | 25.0% |
!! | CTTCTTGTATGTTATTTGTT+GGG | - | tig0013664:2983-3002 | Msa1353550:CDS | 25.0% |
! | TAATTAGGAAGTTATGAATC+AGG | + | tig0013664:3115-3134 | Msa1353550:intergenic | 25.0% |
! | ATGGAAGGTTAATATTTGTT+TGG | - | tig0013664:3169-3188 | Msa1353550:intron | 25.0% |
! | TTAATAGAGAAAACAGAAAG+CGG | + | tig0013664:3311-3330 | Msa1353550:intergenic | 25.0% |
! | AGAAAAAAGTAAAACTTTGG+GGG | - | tig0013664:3517-3536 | Msa1353550:intron | 25.0% |
! | AAAGAAACCAAATGAAATAC+TGG | - | tig0013664:3578-3597 | Msa1353550:intron | 25.0% |
!! | ATTGATTCCAGTATTTCATT+TGG | + | tig0013664:3588-3607 | Msa1353550:intergenic | 25.0% |
! | TGTTATCAATATGACAATTC+GGG | + | tig0013664:3627-3646 | Msa1353550:intergenic | 25.0% |
! | ACCAAAAAGAATAGAATACT+CGG | + | tig0013664:4120-4139 | Msa1353550:intergenic | 25.0% |
! | AATACTTCCTAAACAACTTA+GGG | + | tig0013664:4625-4644 | Msa1353550:intergenic | 25.0% |
! | TAATACTTCCTAAACAACTT+AGG | + | tig0013664:4626-4645 | Msa1353550:intergenic | 25.0% |
!!! | TTAGGAAGTATTAACTATTC+TGG | - | tig0013664:4633-4652 | Msa1353550:intron | 25.0% |
!! | TGGCTTCAAATTTTATAATC+TGG | + | tig0013664:4704-4723 | Msa1353550:intergenic | 25.0% |
!!! | ATATGTTTTACATTGGTTGA+TGG | - | tig0013664:4858-4877 | Msa1353550:intron | 25.0% |
! | ATCAAGACAAAAGAGTAATA+TGG | + | tig0013664:5197-5216 | Msa1353550:intergenic | 25.0% |
! | AATCGTTGCCTATATTTAAA+AGG | - | tig0013664:5298-5317 | Msa1353550:intron | 25.0% |
!! | AAGAGTCTCCTTTTAAATAT+AGG | + | tig0013664:5309-5328 | Msa1353550:intergenic | 25.0% |
! | ATATTTAAAAGGAGACTCTT+AGG | - | tig0013664:5309-5328 | Msa1353550:intron | 25.0% |
!! | AAACAAAAATAATTTGGTGG+AGG | + | tig0013664:5467-5486 | Msa1353550:intergenic | 25.0% |
!!! | TTTCTCATTTTTGTTAAGAG+TGG | - | tig0013664:5589-5608 | Msa1353550:intron | 25.0% |
AAACAGTATGATAAACATGG+AGG | - | tig0013664:2847-2866 | Msa1353550:CDS | 30.0% | |
! | CAAAGAGTATGCAATTAACA+CGG | + | tig0013664:3035-3054 | Msa1353550:intergenic | 30.0% |
ATTGCATACTCTTTGTTAAC+AGG | - | tig0013664:3040-3059 | Msa1353550:CDS | 30.0% | |
AAAGCAAAATGGACAAGAAT+TGG | + | tig0013664:3234-3253 | Msa1353550:intergenic | 30.0% | |
TGACTCATGAAAAAGCAAAA+TGG | + | tig0013664:3245-3264 | Msa1353550:intergenic | 30.0% | |
TAATAGAGAAAACAGAAAGC+GGG | + | tig0013664:3310-3329 | Msa1353550:intergenic | 30.0% | |
! | AAATCTTTGTCGTTTGTCTT+AGG | - | tig0013664:3329-3348 | Msa1353550:intron | 30.0% |
TTGAACGTCTAACATTAAAC+TGG | - | tig0013664:3361-3380 | Msa1353550:intron | 30.0% | |
TGAACGTCTAACATTAAACT+GGG | - | tig0013664:3362-3381 | Msa1353550:intron | 30.0% | |
TTCCAATACAATAAAAGGGA+GGG | + | tig0013664:3479-3498 | Msa1353550:intergenic | 30.0% | |
GAAAAAAGTAAAACTTTGGG+GGG | - | tig0013664:3518-3537 | Msa1353550:intron | 30.0% | |
ATGAAATACTGGAATCAATG+AGG | - | tig0013664:3589-3608 | Msa1353550:intron | 30.0% | |
! | TGCTTTAAACCAACAAGTAT+GGG | + | tig0013664:3694-3713 | Msa1353550:intergenic | 30.0% |
! | TTGCTTTAAACCAACAAGTA+TGG | + | tig0013664:3695-3714 | Msa1353550:intergenic | 30.0% |
AATATTTCAGCAGTCAATTG+TGG | + | tig0013664:3838-3857 | Msa1353550:intergenic | 30.0% | |
CTTATTAGTCATCATTCTGT+TGG | - | tig0013664:3864-3883 | Msa1353550:intron | 30.0% | |
AATGCTCAAAGAAATCATGA+TGG | + | tig0013664:4080-4099 | Msa1353550:intergenic | 30.0% | |
! | TCCGAGTATTCTATTCTTTT+TGG | - | tig0013664:4116-4135 | Msa1353550:intron | 30.0% |
TTAATGTTGGTATACTGTTG+TGG | - | tig0013664:4393-4412 | Msa1353550:intron | 30.0% | |
TAATGTTGGTATACTGTTGT+GGG | - | tig0013664:4394-4413 | Msa1353550:intron | 30.0% | |
AATATTCTGTCAAGTAATGG+AGG | + | tig0013664:4564-4583 | Msa1353550:intergenic | 30.0% | |
GAAGCCAAGAAAATATATAC+AGG | - | tig0013664:4717-4736 | Msa1353550:intron | 30.0% | |
! | CACACACCTTTTATTGATAA+TGG | - | tig0013664:4960-4979 | Msa1353550:intron | 30.0% |
GGAGTAATAGAAATCAATCT+AGG | - | tig0013664:5046-5065 | Msa1353550:intron | 30.0% | |
ATGTTCAACAAACATAGACT+GGG | + | tig0013664:5128-5147 | Msa1353550:intergenic | 30.0% | |
TATGTTCAACAAACATAGAC+TGG | + | tig0013664:5129-5148 | Msa1353550:intergenic | 30.0% | |
!! | TTTTGGGTCAATTTCCTTAT+AGG | - | tig0013664:5268-5287 | Msa1353550:intron | 30.0% |
AGAATATCATTACAATGGCA+TGG | + | tig0013664:5427-5446 | Msa1353550:intergenic | 30.0% | |
AACAAGCATAAGTATCACAA+TGG | + | tig0013664:5777-5796 | Msa1353550:intergenic | 30.0% | |
ATTGGATACAAAGTAGTAAG+TGG | + | tig0013664:5863-5882 | Msa1353550:intergenic | 30.0% | |
GTATGATAAACATGGAGGAA+TGG | - | tig0013664:2852-2871 | Msa1353550:CDS | 35.0% | |
AGGATTTCCAAAATCCATTC+AGG | + | tig0013664:2878-2897 | Msa1353550:intergenic | 35.0% | |
!!! | CATGTGTGCGTAGTTTTTTT+TGG | - | tig0013664:2921-2940 | Msa1353550:CDS | 35.0% |
! | GTCTCTTTTACAAAGTTCAC+AGG | - | tig0013664:2943-2962 | Msa1353550:CDS | 35.0% |
! | TGTATGTTATTTGTTGGGTG+TGG | - | tig0013664:2988-3007 | Msa1353550:CDS | 35.0% |
CATACTCTTTGTTAACAGGT+GGG | - | tig0013664:3044-3063 | Msa1353550:CDS | 35.0% | |
! | GTTGAATCAGACAATTTGCT+TGG | + | tig0013664:3071-3090 | Msa1353550:intergenic | 35.0% |
TTGTCTGATTCAACAAGTGT+CGG | - | tig0013664:3077-3096 | Msa1353550:CDS | 35.0% | |
AGTGCTCTAGCATGATAATT+AGG | + | tig0013664:3130-3149 | Msa1353550:intergenic | 35.0% | |
TCCAATACAATAAAAGGGAG+GGG | + | tig0013664:3478-3497 | Msa1353550:intergenic | 35.0% | |
CTTCCAATACAATAAAAGGG+AGG | + | tig0013664:3480-3499 | Msa1353550:intergenic | 35.0% | |
TAGATCTTTCCCATACTTGT+TGG | - | tig0013664:3682-3701 | Msa1353550:intron | 35.0% | |
! | AAGCAATGACTTGTCTACAA+AGG | - | tig0013664:3709-3728 | Msa1353550:intron | 35.0% |
TCACATAATTGTGGTCATCA+AGG | - | tig0013664:3777-3796 | Msa1353550:intron | 35.0% | |
CACATAATTGTGGTCATCAA+GGG | - | tig0013664:3778-3797 | Msa1353550:intron | 35.0% | |
ACATAATTGTGGTCATCAAG+GGG | - | tig0013664:3779-3798 | Msa1353550:intron | 35.0% | |
!!! | GCATTAGTTCTGGTTTTATG+AGG | - | tig0013664:3926-3945 | Msa1353550:intron | 35.0% |
TAATGTTACTCCTTCTGTTC+AGG | - | tig0013664:3964-3983 | Msa1353550:intron | 35.0% | |
TGGTTTACTTTGATGCTGTT+TGG | - | tig0013664:4136-4155 | Msa1353550:intron | 35.0% | |
CTTATATCTCCCTTGAGTTA+GGG | - | tig0013664:4476-4495 | Msa1353550:intron | 35.0% | |
TTATATCTCCCTTGAGTTAG+GGG | - | tig0013664:4477-4496 | Msa1353550:intron | 35.0% | |
AACAAAAACCCCTAACTCAA+GGG | + | tig0013664:4488-4507 | Msa1353550:intergenic | 35.0% | |
TAACAAAAACCCCTAACTCA+AGG | + | tig0013664:4489-4508 | Msa1353550:intergenic | 35.0% | |
AGGTCAACTAAAAGCTTAAG+TGG | + | tig0013664:4544-4563 | Msa1353550:intergenic | 35.0% | |
TAAACAACTTAGGGAAAAGG+AGG | + | tig0013664:4616-4635 | Msa1353550:intergenic | 35.0% | |
! | TCCTTTTCCCTAAGTTGTTT+AGG | - | tig0013664:4615-4634 | Msa1353550:intron | 35.0% |
TCCTAAACAACTTAGGGAAA+AGG | + | tig0013664:4619-4638 | Msa1353550:intergenic | 35.0% | |
TTAACTATTCTGGTGTGATG+TGG | - | tig0013664:4643-4662 | Msa1353550:intron | 35.0% | |
CTGATTCAATCAAACTCAAG+TGG | + | tig0013664:4758-4777 | Msa1353550:intergenic | 35.0% | |
TGAACCTTGTAAACTTGATG+AGG | - | tig0013664:4812-4831 | Msa1353550:intron | 35.0% | |
ATTGCCTCATCAAGTTTACA+AGG | + | tig0013664:4819-4838 | Msa1353550:intergenic | 35.0% | |
! | TGCGGGTATATGTTTTACAT+TGG | - | tig0013664:4851-4870 | Msa1353550:intron | 35.0% |
!! | TGGTTGATGGTAATTCAAAG+AGG | - | tig0013664:4871-4890 | Msa1353550:intron | 35.0% |
CTAGGAAGTTGTACGATTAA+AGG | - | tig0013664:5064-5083 | Msa1353550:intron | 35.0% | |
ACAAACATAGACTGGGATTA+TGG | + | tig0013664:5121-5140 | Msa1353550:intergenic | 35.0% | |
! | CAAAAATAATTTGGTGGAGG+AGG | + | tig0013664:5464-5483 | Msa1353550:intergenic | 35.0% |
TTTGGTATCTATGTGTGCTT+CGG | + | tig0013664:5534-5553 | Msa1353550:intergenic | 35.0% | |
ATAATTTGAGTCTGCAGCAA+GGG | + | tig0013664:5650-5669 | Msa1353550:intergenic | 35.0% | |
AATAATTTGAGTCTGCAGCA+AGG | + | tig0013664:5651-5670 | Msa1353550:intergenic | 35.0% | |
! | TGCTTGTTGAAGACCATTTA+CGG | - | tig0013664:5789-5808 | Msa1353550:intron | 35.0% |
TACAAAGTAGTAAGTGGAGA+TGG | + | tig0013664:5857-5876 | Msa1353550:intergenic | 35.0% | |
AATCCTGATCTCAAGCTATG+AGG | - | tig0013664:2892-2911 | Msa1353550:CDS | 40.0% | |
TTACCTCATAGCTTGAGATC+AGG | + | tig0013664:2898-2917 | Msa1353550:intergenic | 40.0% | |
! | TTTGTTGGGTGTGGTTTTTG+TGG | - | tig0013664:2997-3016 | Msa1353550:CDS | 40.0% |
! | TTGTTGGGTGTGGTTTTTGT+GGG | - | tig0013664:2998-3017 | Msa1353550:CDS | 40.0% |
GCATACTCTTTGTTAACAGG+TGG | - | tig0013664:3043-3062 | Msa1353550:CDS | 40.0% | |
! | TAACCTTCCATCCATCCTTT+TGG | + | tig0013664:3160-3179 | Msa1353550:intergenic | 40.0% |
TTATTCACCGGAGTTTCCTT+AGG | - | tig0013664:3422-3441 | Msa1353550:CDS | 40.0% | |
CCAATACAATAAAAGGGAGG+GGG | + | tig0013664:3477-3496 | Msa1353550:intergenic | 40.0% | |
! | AAAAGTAAAACTTTGGGGGG+TGG | - | tig0013664:3521-3540 | Msa1353550:intron | 40.0% |
! | AAAGTAAAACTTTGGGGGGT+GGG | - | tig0013664:3522-3541 | Msa1353550:intron | 40.0% |
CTAATGCGAGCAAACAGATA+TGG | + | tig0013664:3913-3932 | Msa1353550:intergenic | 40.0% | |
!!! | TGGTTTTATGAGGCTGATTC+AGG | - | tig0013664:3936-3955 | Msa1353550:intron | 40.0% |
GCTTCTATATCCTGAACAGA+AGG | + | tig0013664:3977-3996 | Msa1353550:intergenic | 40.0% | |
CAACAATTCATTGTGCAGAG+TGG | - | tig0013664:3996-4015 | Msa1353550:intron | 40.0% | |
TCCTAACCACTTGATCATAG+AGG | + | tig0013664:4263-4282 | Msa1353550:intergenic | 40.0% | |
AATTCTAACTGCCCAGCATA+AGG | - | tig0013664:4287-4306 | Msa1353550:intron | 40.0% | |
AAGGGAGATATAAGGTGGTT+GGG | + | tig0013664:4470-4489 | Msa1353550:intergenic | 40.0% | |
AACTCAAGGGAGATATAAGG+TGG | + | tig0013664:4475-4494 | Msa1353550:intergenic | 40.0% | |
CCTAACTCAAGGGAGATATA+AGG | + | tig0013664:4478-4497 | Msa1353550:intergenic | 40.0% | |
CCTTATATCTCCCTTGAGTT+AGG | - | tig0013664:4475-4494 | Msa1353550:intron | 40.0% | |
CCTCAGAAGTTGTATACTCT+CGG | - | tig0013664:5025-5044 | Msa1353550:intron | 40.0% | |
AACGATTCTTCACGCCTATA+AGG | + | tig0013664:5285-5304 | Msa1353550:intergenic | 40.0% | |
TCAAATTATTGCTGCAGCTG+CGG | - | tig0013664:5661-5680 | Msa1353550:CDS | 40.0% | |
ATTGTCTCCAACAGATGCTA+AGG | - | tig0013664:5703-5722 | Msa1353550:CDS | 40.0% | |
!! | GGAATGGCCTGAATGGATTT+TGG | - | tig0013664:2868-2887 | Msa1353550:CDS | 45.0% |
TCTTCACATCTGCAAGCCTA+AGG | + | tig0013664:3441-3460 | Msa1353550:intergenic | 45.0% | |
TAGGCTTGCAGATGTGAAGA+AGG | - | tig0013664:3441-3460 | Msa1353550:CDS | 45.0% | |
! | CCCCCTCCCTTTTATTGTAT+TGG | - | tig0013664:3474-3493 | Msa1353550:CDS | 45.0% |
! | AAGTAAAACTTTGGGGGGTG+GGG | - | tig0013664:3523-3542 | Msa1353550:intron | 45.0% |
TGGCTTCACATACAAACTGC+AGG | + | tig0013664:3818-3837 | Msa1353550:intergenic | 45.0% | |
CTGTTTGCTCGCATTAGTTC+TGG | - | tig0013664:3916-3935 | Msa1353550:intron | 45.0% | |
GCAGAGTGGCTTTCTATTGT+AGG | - | tig0013664:4010-4029 | Msa1353550:intron | 45.0% | |
GAGTGGCTTTCTATTGTAGG+TGG | - | tig0013664:4013-4032 | Msa1353550:intron | 45.0% | |
ATTGTAGGTGGATCTAGCAC+AGG | - | tig0013664:4025-4044 | Msa1353550:intron | 45.0% | |
TTGTAGGTGGATCTAGCACA+GGG | - | tig0013664:4026-4045 | Msa1353550:intron | 45.0% | |
GCCTCTATGATCAAGTGGTT+AGG | - | tig0013664:4259-4278 | Msa1353550:intron | 45.0% | |
TAACTGCCCAGCATAAGGTT+TGG | - | tig0013664:4292-4311 | Msa1353550:intron | 45.0% | |
TGAAGCATGGACAGTGGAAT+GGG | + | tig0013664:4321-4340 | Msa1353550:intergenic | 45.0% | |
TTGAAGCATGGACAGTGGAA+TGG | + | tig0013664:4322-4341 | Msa1353550:intergenic | 45.0% | |
ATTCCACTGTCCATGCTTCA+AGG | - | tig0013664:4321-4340 | Msa1353550:intron | 45.0% | |
TGTCCATGCTTCAAGGTCTA+AGG | - | tig0013664:4328-4347 | Msa1353550:intron | 45.0% | |
GTCCATGCTTCAAGGTCTAA+GGG | - | tig0013664:4329-4348 | Msa1353550:intron | 45.0% | |
TGTTGGTATACTGTTGTGGG+TGG | - | tig0013664:4397-4416 | Msa1353550:intron | 45.0% | |
GTTGGTATACTGTTGTGGGT+GGG | - | tig0013664:4398-4417 | Msa1353550:intron | 45.0% | |
TTGGTATACTGTTGTGGGTG+GGG | - | tig0013664:4399-4418 | Msa1353550:intron | 45.0% | |
AGATATAAGGTGGTTGGGCT+GGG | + | tig0013664:4465-4484 | Msa1353550:intergenic | 45.0% | |
CAAGGGAGATATAAGGTGGT+TGG | + | tig0013664:4471-4490 | Msa1353550:intergenic | 45.0% | |
GGCAATATGAAGAAGCTGTG+CGG | - | tig0013664:4833-4852 | Msa1353550:intron | 45.0% | |
GCAATATGAAGAAGCTGTGC+GGG | - | tig0013664:4834-4853 | Msa1353550:intron | 45.0% | |
! | CCGAGAGTATACAACTTCTG+AGG | + | tig0013664:5028-5047 | Msa1353550:intergenic | 45.0% |
CTGAACCTGCAATTCTCTAG+CGG | + | tig0013664:5352-5371 | Msa1353550:intergenic | 45.0% | |
ATGGCATGGCATATCAAGCA+CGG | + | tig0013664:5413-5432 | Msa1353550:intergenic | 45.0% | |
CACAATGGCATTCTCAACCA+AGG | + | tig0013664:5762-5781 | Msa1353550:intergenic | 45.0% | |
GTTTGCTCTGCAACCGTAAA+TGG | + | tig0013664:5805-5824 | Msa1353550:intergenic | 45.0% | |
GACGTTGAGTGATCGCTTAT+TGG | + | tig0013664:5881-5900 | Msa1353550:intergenic | 45.0% | |
CGAGTCAACAGAAGAAGTTG+CGG | - | tig0013664:5916-5935 | Msa1353550:CDS | 45.0% | |
GGACAACCAAGTTCACTATC+CGG | - | tig0013664:5937-5956 | Msa1353550:CDS | 45.0% | |
ACATGGAGGAATGGCCTGAA+TGG | - | tig0013664:2861-2880 | Msa1353550:CDS | 50.0% | |
! | AGAGCACTCAATGCGCCAAA+AGG | - | tig0013664:3142-3161 | Msa1353550:intron | 50.0% |
CACTCAATGCGCCAAAAGGA+TGG | - | tig0013664:3146-3165 | Msa1353550:intron | 50.0% | |
CAATGCGCCAAAAGGATGGA+TGG | - | tig0013664:3150-3169 | Msa1353550:intron | 50.0% | |
CTGCAAGCCTAAGGAAACTC+CGG | + | tig0013664:3432-3451 | Msa1353550:intergenic | 50.0% | |
TGTAGGTGGATCTAGCACAG+GGG | - | tig0013664:4027-4046 | Msa1353550:intron | 50.0% | |
GTCAAGGACTACACGCTGTT+AGG | + | tig0013664:4228-4247 | Msa1353550:intergenic | 50.0% | |
CCACTTGATCATAGAGGCTC+TGG | + | tig0013664:4257-4276 | Msa1353550:intergenic | 50.0% | |
CCAGAGCCTCTATGATCAAG+TGG | - | tig0013664:4254-4273 | Msa1353550:intron | 50.0% | |
AGACCTTGAAGCATGGACAG+TGG | + | tig0013664:4327-4346 | Msa1353550:intergenic | 50.0% | |
AGCCCTTAGACCTTGAAGCA+TGG | + | tig0013664:4334-4353 | Msa1353550:intergenic | 50.0% | |
AGTTAAGGACTGGGGGGATA+AGG | + | tig0013664:4440-4459 | Msa1353550:intergenic | 50.0% | |
! | ATATAAGGTGGTTGGGCTGG+GGG | + | tig0013664:4463-4482 | Msa1353550:intergenic | 50.0% |
GATATAAGGTGGTTGGGCTG+GGG | + | tig0013664:4464-4483 | Msa1353550:intergenic | 50.0% | |
GAGATATAAGGTGGTTGGGC+TGG | + | tig0013664:4466-4485 | Msa1353550:intergenic | 50.0% | |
GAGACTCTTAGGCAGCTTGT+TGG | - | tig0013664:5320-5339 | Msa1353550:intron | 50.0% | |
CTTTGCCGCTAGAGAATTGC+AGG | - | tig0013664:5344-5363 | Msa1353550:intron | 50.0% | |
CGCTAGAGAATTGCAGGTTC+AGG | - | tig0013664:5350-5369 | Msa1353550:intron | 50.0% | |
TCCAACAGATGCTAAGGCTG+AGG | - | tig0013664:5709-5728 | Msa1353550:intron | 50.0% | |
TAATGCTGCCCAGTTGTCTG+TGG | - | tig0013664:5736-5755 | Msa1353550:intron | 50.0% | |
AACCAAGGCCACAGACAACT+GGG | + | tig0013664:5747-5766 | Msa1353550:intergenic | 50.0% | |
CAACCAAGTTCACTATCCGG+TGG | - | tig0013664:5940-5959 | Msa1353550:CDS | 50.0% | |
GCGCCAAAAGGATGGATGGA+AGG | - | tig0013664:3154-3173 | Msa1353550:intron | 55.0% | |
! | AAAACTTTGGGGGGTGGGGA+AGG | - | tig0013664:3527-3546 | Msa1353550:intron | 55.0% |
! | AAACTTTGGGGGGTGGGGAA+GGG | - | tig0013664:3528-3547 | Msa1353550:intron | 55.0% |
! | GAGGCTCTGGTAGCATGTCA+AGG | + | tig0013664:4244-4263 | Msa1353550:intergenic | 55.0% |
CTGCCCAGCATAAGGTTTGG+TGG | - | tig0013664:4295-4314 | Msa1353550:intron | 55.0% | |
GGGCCACCAAACCTTATGCT+GGG | + | tig0013664:4301-4320 | Msa1353550:intergenic | 55.0% | |
TGGGCCACCAAACCTTATGC+TGG | + | tig0013664:4302-4321 | Msa1353550:intergenic | 55.0% | |
TGGGGGGATAAGGAGGTTGT+GGG | + | tig0013664:4430-4449 | Msa1353550:intergenic | 55.0% | |
TAAGGACTGGGGGGATAAGG+AGG | + | tig0013664:4437-4456 | Msa1353550:intergenic | 55.0% | |
ATTATTGCTGCAGCTGCGGC+TGG | - | tig0013664:5665-5684 | Msa1353550:CDS | 55.0% | |
GCCTCAGCCTTAGCATCTGT+TGG | + | tig0013664:5713-5732 | Msa1353550:intergenic | 55.0% | |
CAACCAAGGCCACAGACAAC+TGG | + | tig0013664:5748-5767 | Msa1353550:intergenic | 55.0% | |
GAGCCACCGGATAGTGAACT+TGG | + | tig0013664:5946-5965 | Msa1353550:intergenic | 55.0% | |
AGTTCACTATCCGGTGGCTC+AGG | - | tig0013664:5946-5965 | Msa1353550:CDS | 55.0% | |
! | AACTTTGGGGGGTGGGGAAG+GGG | - | tig0013664:3529-3548 | Msa1353550:intron | 60.0% |
GCACAGGGGAACAGCGAGTA+AGG | - | tig0013664:4041-4060 | Msa1353550:intron | 60.0% | |
CTGGGGGGATAAGGAGGTTG+TGG | + | tig0013664:4431-4450 | Msa1353550:intergenic | 60.0% | |
TGGGGGAGTTAAGGACTGGG+GGG | + | tig0013664:4446-4465 | Msa1353550:intergenic | 60.0% | |
CTGGGGGAGTTAAGGACTGG+GGG | + | tig0013664:4447-4466 | Msa1353550:intergenic | 60.0% | |
GCTGGGGGAGTTAAGGACTG+GGG | + | tig0013664:4448-4467 | Msa1353550:intergenic | 60.0% | |
GGCTGGGGGAGTTAAGGACT+GGG | + | tig0013664:4449-4468 | Msa1353550:intergenic | 60.0% | |
! | TGGTTGGGCTGGGGGAGTTA+AGG | + | tig0013664:4455-4474 | Msa1353550:intergenic | 60.0% |
TGCCCAGTTGTCTGTGGCCT+TGG | - | tig0013664:5742-5761 | Msa1353550:intron | 60.0% | |
TCACTATCCGGTGGCTCAGG+CGG | - | tig0013664:5949-5968 | Msa1353550:CDS | 60.0% | |
! | ACTTTGGGGGGTGGGGAAGG+GGG | - | tig0013664:3530-3549 | Msa1353550:intron | 65.0% |
GGGCTGGGGGAGTTAAGGAC+TGG | + | tig0013664:4450-4469 | Msa1353550:intergenic | 65.0% | |
!! | TGCGGCTGGTGTTGCTGCTG+AGG | - | tig0013664:5679-5698 | Msa1353550:CDS | 65.0% |
!! | GCGGCTGGTGTTGCTGCTGA+GGG | - | tig0013664:5680-5699 | Msa1353550:CDS | 65.0% |
AGGGTTTCCGCCTGAGCCAC+CGG | + | tig0013664:5959-5978 | Msa1353550:intergenic | 65.0% | |
GGGGGGTGGGGAAGGGGGTT+AGG | - | tig0013664:3535-3554 | Msa1353550:intron | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0013664 | gene | 2803 | 5982 | 2803 | ID=Msa1353550;Name=Msa1353550 |
tig0013664 | mRNA | 2803 | 5982 | 2803 | ID=Msa1353550-mRNA-1;Parent=Msa1353550;Name=Msa1353550-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0.8|1|1|1|5|0|235 |
tig0013664 | exon | 2803 | 3126 | 2803 | ID=Msa1353550-mRNA-1:exon:8729;Parent=Msa1353550-mRNA-1 |
tig0013664 | exon | 3414 | 3495 | 3414 | ID=Msa1353550-mRNA-1:exon:8728;Parent=Msa1353550-mRNA-1 |
tig0013664 | exon | 4723 | 4799 | 4723 | ID=Msa1353550-mRNA-1:exon:8727;Parent=Msa1353550-mRNA-1 |
tig0013664 | exon | 5610 | 5723 | 5610 | ID=Msa1353550-mRNA-1:exon:8726;Parent=Msa1353550-mRNA-1 |
tig0013664 | exon | 5872 | 5982 | 5872 | ID=Msa1353550-mRNA-1:exon:8725;Parent=Msa1353550-mRNA-1 |
tig0013664 | CDS | 5872 | 5982 | 5872 | ID=Msa1353550-mRNA-1:cds;Parent=Msa1353550-mRNA-1 |
tig0013664 | CDS | 5610 | 5723 | 5610 | ID=Msa1353550-mRNA-1:cds;Parent=Msa1353550-mRNA-1 |
tig0013664 | CDS | 4723 | 4799 | 4723 | ID=Msa1353550-mRNA-1:cds;Parent=Msa1353550-mRNA-1 |
tig0013664 | CDS | 3414 | 3495 | 3414 | ID=Msa1353550-mRNA-1:cds;Parent=Msa1353550-mRNA-1 |
tig0013664 | CDS | 2803 | 3126 | 2803 | ID=Msa1353550-mRNA-1:cds;Parent=Msa1353550-mRNA-1 |
Gene Sequence |
Protein sequence |