AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1353550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1353550 MtrunA17_Chr7g0246241 96.875 224 7 0 1 224 1199 1422 4.60e-142 439
Msa1353550 MtrunA17_Chr8g0351361 81.081 148 25 2 76 222 34 179 1.11e-63 214
Msa1353550 MtrunA17_Chr8g0351351 78.667 75 16 0 1 75 556 630 2.90e-38 140
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1353550 AT3G60920.1 72.430 214 58 1 1 213 778 991 5.14e-95 304
Msa1353550 AT3G60920.2 72.430 214 58 1 1 213 829 1042 6.19e-95 304
Msa1353550 AT2G45540.1 81.726 197 36 0 1 197 1209 1405 7.43e-95 304
Msa1353550 AT2G45540.3 81.726 197 36 0 1 197 1209 1405 7.43e-95 304
Msa1353550 AT2G45540.6 81.726 197 36 0 1 197 1209 1405 7.43e-95 304
Msa1353550 AT2G45540.5 81.726 197 36 0 1 197 1209 1405 7.43e-95 304
Msa1353550 AT2G45540.4 81.726 197 36 0 1 197 1209 1405 7.43e-95 304
Msa1353550 AT2G45540.2 81.726 197 36 0 1 197 1264 1460 8.77e-95 304

Find 56 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCGTTGCCTATATTTAAA+AGG 0.228601 tig0013664:-3465 Msa1353550:CDS
GGAATGGCCTGAATGGATTT+TGG 0.249701 tig0013664:-5895 Msa1353550:CDS
GTTTGCTCTGCAACCGTAAA+TGG 0.263129 tig0013664:+2961 Msa1353550:intergenic
GACGTTGAGTGATCGCTTAT+TGG 0.277918 tig0013664:+2885 Msa1353550:intergenic
TGCCCAGTTGTCTGTGGCCT+TGG 0.278942 tig0013664:-3021 Msa1353550:CDS
TGCTTGTTGAAGACCATTTA+CGG 0.300538 tig0013664:-2974 Msa1353550:CDS
GCAGAGTGGCTTTCTATTGT+AGG 0.306791 tig0013664:-4753 Msa1353550:CDS
CTTTGCCGCTAGAGAATTGC+AGG 0.327324 tig0013664:-3419 Msa1353550:CDS
AGTGCTCTAGCATGATAATT+AGG 0.336815 tig0013664:+5636 Msa1353550:intergenic
ATATTTAAAAGGAGACTCTT+AGG 0.339054 tig0013664:-3454 Msa1353550:CDS
TAACCTTCCATCCATCCTTT+TGG 0.352570 tig0013664:+5606 Msa1353550:intergenic
CAACCAAGGCCACAGACAAC+TGG 0.371483 tig0013664:+3018 Msa1353550:intergenic
CGCTAGAGAATTGCAGGTTC+AGG 0.376970 tig0013664:-3413 Msa1353550:intron
GAGACTCTTAGGCAGCTTGT+TGG 0.433547 tig0013664:-3443 Msa1353550:CDS
AGGATTTCCAAAATCCATTC+AGG 0.442759 tig0013664:+5888 Msa1353550:intergenic
ATTATTGCTGCAGCTGCGGC+TGG 0.452497 tig0013664:-3098 Msa1353550:CDS
TAATTAGGAAGTTATGAATC+AGG 0.453464 tig0013664:+5651 Msa1353550:intergenic
TGCGGCTGGTGTTGCTGCTG+AGG 0.457617 tig0013664:-3084 Msa1353550:CDS
TTACCTCATAGCTTGAGATC+AGG 0.458647 tig0013664:+5868 Msa1353550:intergenic
GTTGAATCAGACAATTTGCT+TGG 0.463930 tig0013664:+5695 Msa1353550:intergenic
ACATGGAGGAATGGCCTGAA+TGG 0.466037 tig0013664:-5902 Msa1353550:CDS
GCCTCAGCCTTAGCATCTGT+TGG 0.479947 tig0013664:+3053 Msa1353550:intergenic
GCACAGGGGAACAGCGAGTA+AGG 0.481282 tig0013664:-4722 Msa1353550:intron
GCGGCTGGTGTTGCTGCTGA+GGG 0.490555 tig0013664:-3083 Msa1353550:CDS
AGAGCACTCAATGCGCCAAA+AGG 0.490987 tig0013664:-5621 Msa1353550:CDS
TACAAAGTAGTAAGTGGAGA+TGG 0.494605 tig0013664:+2909 Msa1353550:intergenic
AGGGTTTCCGCCTGAGCCAC+CGG 0.498214 tig0013664:+2807 Msa1353550:intergenic
CACTCAATGCGCCAAAAGGA+TGG 0.504036 tig0013664:-5617 Msa1353550:CDS
AGTTCACTATCCGGTGGCTC+AGG 0.506905 tig0013664:-2817 Msa1353550:CDS
GAGCCACCGGATAGTGAACT+TGG 0.529126 tig0013664:+2820 Msa1353550:intergenic
GAGTGGCTTTCTATTGTAGG+TGG 0.534120 tig0013664:-4750 Msa1353550:CDS
TCAAATTATTGCTGCAGCTG+CGG 0.534498 tig0013664:-3102 Msa1353550:CDS
ATTGTAGGTGGATCTAGCAC+AGG 0.543333 tig0013664:-4738 Msa1353550:CDS
AATCCTGATCTCAAGCTATG+AGG 0.552318 tig0013664:-5871 Msa1353550:intron
CAATGCGCCAAAAGGATGGA+TGG 0.552448 tig0013664:-5613 Msa1353550:CDS
ATTGGATACAAAGTAGTAAG+TGG 0.553379 tig0013664:+2903 Msa1353550:intergenic
ATTGTCTCCAACAGATGCTA+AGG 0.558910 tig0013664:-3060 Msa1353550:CDS
TCCAACAGATGCTAAGGCTG+AGG 0.567281 tig0013664:-3054 Msa1353550:CDS
TTGTCTGATTCAACAAGTGT+CGG 0.570685 tig0013664:-5686 Msa1353550:CDS
AACCAAGGCCACAGACAACT+GGG 0.572160 tig0013664:+3019 Msa1353550:intergenic
GTATGATAAACATGGAGGAA+TGG 0.576034 tig0013664:-5911 Msa1353550:CDS
TCACTATCCGGTGGCTCAGG+CGG 0.576338 tig0013664:-2814 Msa1353550:CDS
GGACAACCAAGTTCACTATC+CGG 0.577476 tig0013664:-2826 Msa1353550:CDS
GCGCCAAAAGGATGGATGGA+AGG 0.601223 tig0013664:-5609 Msa1353550:intron
TAATGCTGCCCAGTTGTCTG+TGG 0.618368 tig0013664:-3027 Msa1353550:CDS
CAACAATTCATTGTGCAGAG+TGG 0.630196 tig0013664:-4767 Msa1353550:CDS
ACTATAAGCATACATCTAGA+GGG 0.631737 tig0013664:+2788 Msa1353550:intergenic
TAGAAACAGTATGATAAACA+TGG 0.641693 tig0013664:-5919 Msa1353550:CDS
CACAATGGCATTCTCAACCA+AGG 0.647176 tig0013664:+3004 Msa1353550:intergenic
CTGAACCTGCAATTCTCTAG+CGG 0.648901 tig0013664:+3414 Msa1353550:intergenic
AACAAGCATAAGTATCACAA+TGG 0.655607 tig0013664:+2989 Msa1353550:intergenic
TTGTAGGTGGATCTAGCACA+GGG 0.661961 tig0013664:-4737 Msa1353550:CDS
CAACCAAGTTCACTATCCGG+TGG 0.697535 tig0013664:-2823 Msa1353550:CDS
CGAGTCAACAGAAGAAGTTG+CGG 0.698024 tig0013664:-2847 Msa1353550:CDS
AAACAGTATGATAAACATGG+AGG 0.718345 tig0013664:-5916 Msa1353550:CDS
TGTAGGTGGATCTAGCACAG+GGG 0.834076 tig0013664:-4736 Msa1353550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATATAATCATTCTTTTTT+TGG - tig0013664:5251-5270 Msa1353550:intron 10.0%
!!! TATATAATCATTCTTTTTTT+GGG - tig0013664:5252-5271 Msa1353550:intron 10.0%
!! ATTTCAAAACAAAAATAATT+TGG + tig0013664:5473-5492 Msa1353550:intergenic 10.0%
!!! TAAGTTTTTTTTTTATTCAC+CGG - tig0013664:3410-3429 Msa1353550:intron 15.0%
!! TAAAGAAAAAAGTAAAACTT+TGG - tig0013664:3514-3533 Msa1353550:intron 15.0%
!! AAAGAAAAAAGTAAAACTTT+GGG - tig0013664:3515-3534 Msa1353550:intron 15.0%
!!! GTTAGTTTTTTTTTTTTGAA+TGG - tig0013664:4357-4376 Msa1353550:intron 15.0%
!! ATTCTTCCAATACAATAAAA+GGG + tig0013664:3483-3502 Msa1353550:intergenic 20.0%
!! AATTCTTCCAATACAATAAA+AGG + tig0013664:3484-3503 Msa1353550:intergenic 20.0%
!!! GTTTTACTTTTTTCTTTACT+TGG + tig0013664:3512-3531 Msa1353550:intergenic 20.0%
!! AAGAAAAAAGTAAAACTTTG+GGG - tig0013664:3516-3535 Msa1353550:intron 20.0%
!! ATGTTATCAATATGACAATT+CGG + tig0013664:3628-3647 Msa1353550:intergenic 20.0%
!! ATTTACTAATCACATAATTG+TGG - tig0013664:3768-3787 Msa1353550:intron 20.0%
!!! CTTTTACTATCTTTTTAGTA+TGG - tig0013664:4177-4196 Msa1353550:intron 20.0%
!!! CAAATTTTAGTTGTTAATGT+TGG - tig0013664:4380-4399 Msa1353550:intron 20.0%
!! AAAAATATTCTGTCAAGTAA+TGG + tig0013664:4567-4586 Msa1353550:intergenic 20.0%
!!! TTTTCCTGTATATATTTTCT+TGG + tig0013664:4724-4743 Msa1353550:intergenic 20.0%
!! GTAAAACCATTATCAATAAA+AGG + tig0013664:4969-4988 Msa1353550:intergenic 20.0%
!! AAAAATTGTAAACTATTGCT+AGG + tig0013664:5228-5247 Msa1353550:intergenic 20.0%
!!! TAGCAATAGTTTACAATTTT+TGG - tig0013664:5227-5246 Msa1353550:intron 20.0%
!! AAGAAAGAATATCATTACAA+TGG + tig0013664:5432-5451 Msa1353550:intergenic 20.0%
!! TCAAAACAAAAATAATTTGG+TGG + tig0013664:5470-5489 Msa1353550:intergenic 20.0%
!!! TTTGAAATGTATATAACACT+TGG - tig0013664:5485-5504 Msa1353550:intron 20.0%
!! TTGAAATGTATATAACACTT+GGG - tig0013664:5486-5505 Msa1353550:intron 20.0%
!!! ATCATTTTAGCATATGATTT+TGG + tig0013664:5552-5571 Msa1353550:intergenic 20.0%
!!! ATCATACTGTTTCTATTTTC+AGG + tig0013664:2839-2858 Msa0991390:intergenic 25.0%
! TAGAAACAGTATGATAAACA+TGG - tig0013664:2844-2863 Msa1353550:CDS 25.0%
! ACAAATAACATACAAGAAGT+TGG + tig0013664:2982-3001 Msa1353550:intergenic 25.0%
!! ACTTCTTGTATGTTATTTGT+TGG - tig0013664:2982-3001 Msa1353550:CDS 25.0%
!! CTTCTTGTATGTTATTTGTT+GGG - tig0013664:2983-3002 Msa1353550:CDS 25.0%
! TAATTAGGAAGTTATGAATC+AGG + tig0013664:3115-3134 Msa1353550:intergenic 25.0%
! ATGGAAGGTTAATATTTGTT+TGG - tig0013664:3169-3188 Msa1353550:intron 25.0%
! TTAATAGAGAAAACAGAAAG+CGG + tig0013664:3311-3330 Msa1353550:intergenic 25.0%
! AGAAAAAAGTAAAACTTTGG+GGG - tig0013664:3517-3536 Msa1353550:intron 25.0%
! AAAGAAACCAAATGAAATAC+TGG - tig0013664:3578-3597 Msa1353550:intron 25.0%
!! ATTGATTCCAGTATTTCATT+TGG + tig0013664:3588-3607 Msa1353550:intergenic 25.0%
! TGTTATCAATATGACAATTC+GGG + tig0013664:3627-3646 Msa1353550:intergenic 25.0%
! ACCAAAAAGAATAGAATACT+CGG + tig0013664:4120-4139 Msa1353550:intergenic 25.0%
! AATACTTCCTAAACAACTTA+GGG + tig0013664:4625-4644 Msa1353550:intergenic 25.0%
! TAATACTTCCTAAACAACTT+AGG + tig0013664:4626-4645 Msa1353550:intergenic 25.0%
!!! TTAGGAAGTATTAACTATTC+TGG - tig0013664:4633-4652 Msa1353550:intron 25.0%
!! TGGCTTCAAATTTTATAATC+TGG + tig0013664:4704-4723 Msa1353550:intergenic 25.0%
!!! ATATGTTTTACATTGGTTGA+TGG - tig0013664:4858-4877 Msa1353550:intron 25.0%
! ATCAAGACAAAAGAGTAATA+TGG + tig0013664:5197-5216 Msa1353550:intergenic 25.0%
! AATCGTTGCCTATATTTAAA+AGG - tig0013664:5298-5317 Msa1353550:intron 25.0%
!! AAGAGTCTCCTTTTAAATAT+AGG + tig0013664:5309-5328 Msa1353550:intergenic 25.0%
! ATATTTAAAAGGAGACTCTT+AGG - tig0013664:5309-5328 Msa1353550:intron 25.0%
!! AAACAAAAATAATTTGGTGG+AGG + tig0013664:5467-5486 Msa1353550:intergenic 25.0%
!!! TTTCTCATTTTTGTTAAGAG+TGG - tig0013664:5589-5608 Msa1353550:intron 25.0%
AAACAGTATGATAAACATGG+AGG - tig0013664:2847-2866 Msa1353550:CDS 30.0%
! CAAAGAGTATGCAATTAACA+CGG + tig0013664:3035-3054 Msa1353550:intergenic 30.0%
ATTGCATACTCTTTGTTAAC+AGG - tig0013664:3040-3059 Msa1353550:CDS 30.0%
AAAGCAAAATGGACAAGAAT+TGG + tig0013664:3234-3253 Msa1353550:intergenic 30.0%
TGACTCATGAAAAAGCAAAA+TGG + tig0013664:3245-3264 Msa1353550:intergenic 30.0%
TAATAGAGAAAACAGAAAGC+GGG + tig0013664:3310-3329 Msa1353550:intergenic 30.0%
! AAATCTTTGTCGTTTGTCTT+AGG - tig0013664:3329-3348 Msa1353550:intron 30.0%
TTGAACGTCTAACATTAAAC+TGG - tig0013664:3361-3380 Msa1353550:intron 30.0%
TGAACGTCTAACATTAAACT+GGG - tig0013664:3362-3381 Msa1353550:intron 30.0%
TTCCAATACAATAAAAGGGA+GGG + tig0013664:3479-3498 Msa1353550:intergenic 30.0%
GAAAAAAGTAAAACTTTGGG+GGG - tig0013664:3518-3537 Msa1353550:intron 30.0%
ATGAAATACTGGAATCAATG+AGG - tig0013664:3589-3608 Msa1353550:intron 30.0%
! TGCTTTAAACCAACAAGTAT+GGG + tig0013664:3694-3713 Msa1353550:intergenic 30.0%
! TTGCTTTAAACCAACAAGTA+TGG + tig0013664:3695-3714 Msa1353550:intergenic 30.0%
AATATTTCAGCAGTCAATTG+TGG + tig0013664:3838-3857 Msa1353550:intergenic 30.0%
CTTATTAGTCATCATTCTGT+TGG - tig0013664:3864-3883 Msa1353550:intron 30.0%
AATGCTCAAAGAAATCATGA+TGG + tig0013664:4080-4099 Msa1353550:intergenic 30.0%
! TCCGAGTATTCTATTCTTTT+TGG - tig0013664:4116-4135 Msa1353550:intron 30.0%
TTAATGTTGGTATACTGTTG+TGG - tig0013664:4393-4412 Msa1353550:intron 30.0%
TAATGTTGGTATACTGTTGT+GGG - tig0013664:4394-4413 Msa1353550:intron 30.0%
AATATTCTGTCAAGTAATGG+AGG + tig0013664:4564-4583 Msa1353550:intergenic 30.0%
GAAGCCAAGAAAATATATAC+AGG - tig0013664:4717-4736 Msa1353550:intron 30.0%
! CACACACCTTTTATTGATAA+TGG - tig0013664:4960-4979 Msa1353550:intron 30.0%
GGAGTAATAGAAATCAATCT+AGG - tig0013664:5046-5065 Msa1353550:intron 30.0%
ATGTTCAACAAACATAGACT+GGG + tig0013664:5128-5147 Msa1353550:intergenic 30.0%
TATGTTCAACAAACATAGAC+TGG + tig0013664:5129-5148 Msa1353550:intergenic 30.0%
!! TTTTGGGTCAATTTCCTTAT+AGG - tig0013664:5268-5287 Msa1353550:intron 30.0%
AGAATATCATTACAATGGCA+TGG + tig0013664:5427-5446 Msa1353550:intergenic 30.0%
AACAAGCATAAGTATCACAA+TGG + tig0013664:5777-5796 Msa1353550:intergenic 30.0%
ATTGGATACAAAGTAGTAAG+TGG + tig0013664:5863-5882 Msa1353550:intergenic 30.0%
GTATGATAAACATGGAGGAA+TGG - tig0013664:2852-2871 Msa1353550:CDS 35.0%
AGGATTTCCAAAATCCATTC+AGG + tig0013664:2878-2897 Msa1353550:intergenic 35.0%
!!! CATGTGTGCGTAGTTTTTTT+TGG - tig0013664:2921-2940 Msa1353550:CDS 35.0%
! GTCTCTTTTACAAAGTTCAC+AGG - tig0013664:2943-2962 Msa1353550:CDS 35.0%
! TGTATGTTATTTGTTGGGTG+TGG - tig0013664:2988-3007 Msa1353550:CDS 35.0%
CATACTCTTTGTTAACAGGT+GGG - tig0013664:3044-3063 Msa1353550:CDS 35.0%
! GTTGAATCAGACAATTTGCT+TGG + tig0013664:3071-3090 Msa1353550:intergenic 35.0%
TTGTCTGATTCAACAAGTGT+CGG - tig0013664:3077-3096 Msa1353550:CDS 35.0%
AGTGCTCTAGCATGATAATT+AGG + tig0013664:3130-3149 Msa1353550:intergenic 35.0%
TCCAATACAATAAAAGGGAG+GGG + tig0013664:3478-3497 Msa1353550:intergenic 35.0%
CTTCCAATACAATAAAAGGG+AGG + tig0013664:3480-3499 Msa1353550:intergenic 35.0%
TAGATCTTTCCCATACTTGT+TGG - tig0013664:3682-3701 Msa1353550:intron 35.0%
! AAGCAATGACTTGTCTACAA+AGG - tig0013664:3709-3728 Msa1353550:intron 35.0%
TCACATAATTGTGGTCATCA+AGG - tig0013664:3777-3796 Msa1353550:intron 35.0%
CACATAATTGTGGTCATCAA+GGG - tig0013664:3778-3797 Msa1353550:intron 35.0%
ACATAATTGTGGTCATCAAG+GGG - tig0013664:3779-3798 Msa1353550:intron 35.0%
!!! GCATTAGTTCTGGTTTTATG+AGG - tig0013664:3926-3945 Msa1353550:intron 35.0%
TAATGTTACTCCTTCTGTTC+AGG - tig0013664:3964-3983 Msa1353550:intron 35.0%
TGGTTTACTTTGATGCTGTT+TGG - tig0013664:4136-4155 Msa1353550:intron 35.0%
CTTATATCTCCCTTGAGTTA+GGG - tig0013664:4476-4495 Msa1353550:intron 35.0%
TTATATCTCCCTTGAGTTAG+GGG - tig0013664:4477-4496 Msa1353550:intron 35.0%
AACAAAAACCCCTAACTCAA+GGG + tig0013664:4488-4507 Msa1353550:intergenic 35.0%
TAACAAAAACCCCTAACTCA+AGG + tig0013664:4489-4508 Msa1353550:intergenic 35.0%
AGGTCAACTAAAAGCTTAAG+TGG + tig0013664:4544-4563 Msa1353550:intergenic 35.0%
TAAACAACTTAGGGAAAAGG+AGG + tig0013664:4616-4635 Msa1353550:intergenic 35.0%
! TCCTTTTCCCTAAGTTGTTT+AGG - tig0013664:4615-4634 Msa1353550:intron 35.0%
TCCTAAACAACTTAGGGAAA+AGG + tig0013664:4619-4638 Msa1353550:intergenic 35.0%
TTAACTATTCTGGTGTGATG+TGG - tig0013664:4643-4662 Msa1353550:intron 35.0%
CTGATTCAATCAAACTCAAG+TGG + tig0013664:4758-4777 Msa1353550:intergenic 35.0%
TGAACCTTGTAAACTTGATG+AGG - tig0013664:4812-4831 Msa1353550:intron 35.0%
ATTGCCTCATCAAGTTTACA+AGG + tig0013664:4819-4838 Msa1353550:intergenic 35.0%
! TGCGGGTATATGTTTTACAT+TGG - tig0013664:4851-4870 Msa1353550:intron 35.0%
!! TGGTTGATGGTAATTCAAAG+AGG - tig0013664:4871-4890 Msa1353550:intron 35.0%
CTAGGAAGTTGTACGATTAA+AGG - tig0013664:5064-5083 Msa1353550:intron 35.0%
ACAAACATAGACTGGGATTA+TGG + tig0013664:5121-5140 Msa1353550:intergenic 35.0%
! CAAAAATAATTTGGTGGAGG+AGG + tig0013664:5464-5483 Msa1353550:intergenic 35.0%
TTTGGTATCTATGTGTGCTT+CGG + tig0013664:5534-5553 Msa1353550:intergenic 35.0%
ATAATTTGAGTCTGCAGCAA+GGG + tig0013664:5650-5669 Msa1353550:intergenic 35.0%
AATAATTTGAGTCTGCAGCA+AGG + tig0013664:5651-5670 Msa1353550:intergenic 35.0%
! TGCTTGTTGAAGACCATTTA+CGG - tig0013664:5789-5808 Msa1353550:intron 35.0%
TACAAAGTAGTAAGTGGAGA+TGG + tig0013664:5857-5876 Msa1353550:intergenic 35.0%
AATCCTGATCTCAAGCTATG+AGG - tig0013664:2892-2911 Msa1353550:CDS 40.0%
TTACCTCATAGCTTGAGATC+AGG + tig0013664:2898-2917 Msa1353550:intergenic 40.0%
! TTTGTTGGGTGTGGTTTTTG+TGG - tig0013664:2997-3016 Msa1353550:CDS 40.0%
! TTGTTGGGTGTGGTTTTTGT+GGG - tig0013664:2998-3017 Msa1353550:CDS 40.0%
GCATACTCTTTGTTAACAGG+TGG - tig0013664:3043-3062 Msa1353550:CDS 40.0%
! TAACCTTCCATCCATCCTTT+TGG + tig0013664:3160-3179 Msa1353550:intergenic 40.0%
TTATTCACCGGAGTTTCCTT+AGG - tig0013664:3422-3441 Msa1353550:CDS 40.0%
CCAATACAATAAAAGGGAGG+GGG + tig0013664:3477-3496 Msa1353550:intergenic 40.0%
! AAAAGTAAAACTTTGGGGGG+TGG - tig0013664:3521-3540 Msa1353550:intron 40.0%
! AAAGTAAAACTTTGGGGGGT+GGG - tig0013664:3522-3541 Msa1353550:intron 40.0%
CTAATGCGAGCAAACAGATA+TGG + tig0013664:3913-3932 Msa1353550:intergenic 40.0%
!!! TGGTTTTATGAGGCTGATTC+AGG - tig0013664:3936-3955 Msa1353550:intron 40.0%
GCTTCTATATCCTGAACAGA+AGG + tig0013664:3977-3996 Msa1353550:intergenic 40.0%
CAACAATTCATTGTGCAGAG+TGG - tig0013664:3996-4015 Msa1353550:intron 40.0%
TCCTAACCACTTGATCATAG+AGG + tig0013664:4263-4282 Msa1353550:intergenic 40.0%
AATTCTAACTGCCCAGCATA+AGG - tig0013664:4287-4306 Msa1353550:intron 40.0%
AAGGGAGATATAAGGTGGTT+GGG + tig0013664:4470-4489 Msa1353550:intergenic 40.0%
AACTCAAGGGAGATATAAGG+TGG + tig0013664:4475-4494 Msa1353550:intergenic 40.0%
CCTAACTCAAGGGAGATATA+AGG + tig0013664:4478-4497 Msa1353550:intergenic 40.0%
CCTTATATCTCCCTTGAGTT+AGG - tig0013664:4475-4494 Msa1353550:intron 40.0%
CCTCAGAAGTTGTATACTCT+CGG - tig0013664:5025-5044 Msa1353550:intron 40.0%
AACGATTCTTCACGCCTATA+AGG + tig0013664:5285-5304 Msa1353550:intergenic 40.0%
TCAAATTATTGCTGCAGCTG+CGG - tig0013664:5661-5680 Msa1353550:CDS 40.0%
ATTGTCTCCAACAGATGCTA+AGG - tig0013664:5703-5722 Msa1353550:CDS 40.0%
!! GGAATGGCCTGAATGGATTT+TGG - tig0013664:2868-2887 Msa1353550:CDS 45.0%
TCTTCACATCTGCAAGCCTA+AGG + tig0013664:3441-3460 Msa1353550:intergenic 45.0%
TAGGCTTGCAGATGTGAAGA+AGG - tig0013664:3441-3460 Msa1353550:CDS 45.0%
! CCCCCTCCCTTTTATTGTAT+TGG - tig0013664:3474-3493 Msa1353550:CDS 45.0%
! AAGTAAAACTTTGGGGGGTG+GGG - tig0013664:3523-3542 Msa1353550:intron 45.0%
TGGCTTCACATACAAACTGC+AGG + tig0013664:3818-3837 Msa1353550:intergenic 45.0%
CTGTTTGCTCGCATTAGTTC+TGG - tig0013664:3916-3935 Msa1353550:intron 45.0%
GCAGAGTGGCTTTCTATTGT+AGG - tig0013664:4010-4029 Msa1353550:intron 45.0%
GAGTGGCTTTCTATTGTAGG+TGG - tig0013664:4013-4032 Msa1353550:intron 45.0%
ATTGTAGGTGGATCTAGCAC+AGG - tig0013664:4025-4044 Msa1353550:intron 45.0%
TTGTAGGTGGATCTAGCACA+GGG - tig0013664:4026-4045 Msa1353550:intron 45.0%
GCCTCTATGATCAAGTGGTT+AGG - tig0013664:4259-4278 Msa1353550:intron 45.0%
TAACTGCCCAGCATAAGGTT+TGG - tig0013664:4292-4311 Msa1353550:intron 45.0%
TGAAGCATGGACAGTGGAAT+GGG + tig0013664:4321-4340 Msa1353550:intergenic 45.0%
TTGAAGCATGGACAGTGGAA+TGG + tig0013664:4322-4341 Msa1353550:intergenic 45.0%
ATTCCACTGTCCATGCTTCA+AGG - tig0013664:4321-4340 Msa1353550:intron 45.0%
TGTCCATGCTTCAAGGTCTA+AGG - tig0013664:4328-4347 Msa1353550:intron 45.0%
GTCCATGCTTCAAGGTCTAA+GGG - tig0013664:4329-4348 Msa1353550:intron 45.0%
TGTTGGTATACTGTTGTGGG+TGG - tig0013664:4397-4416 Msa1353550:intron 45.0%
GTTGGTATACTGTTGTGGGT+GGG - tig0013664:4398-4417 Msa1353550:intron 45.0%
TTGGTATACTGTTGTGGGTG+GGG - tig0013664:4399-4418 Msa1353550:intron 45.0%
AGATATAAGGTGGTTGGGCT+GGG + tig0013664:4465-4484 Msa1353550:intergenic 45.0%
CAAGGGAGATATAAGGTGGT+TGG + tig0013664:4471-4490 Msa1353550:intergenic 45.0%
GGCAATATGAAGAAGCTGTG+CGG - tig0013664:4833-4852 Msa1353550:intron 45.0%
GCAATATGAAGAAGCTGTGC+GGG - tig0013664:4834-4853 Msa1353550:intron 45.0%
! CCGAGAGTATACAACTTCTG+AGG + tig0013664:5028-5047 Msa1353550:intergenic 45.0%
CTGAACCTGCAATTCTCTAG+CGG + tig0013664:5352-5371 Msa1353550:intergenic 45.0%
ATGGCATGGCATATCAAGCA+CGG + tig0013664:5413-5432 Msa1353550:intergenic 45.0%
CACAATGGCATTCTCAACCA+AGG + tig0013664:5762-5781 Msa1353550:intergenic 45.0%
GTTTGCTCTGCAACCGTAAA+TGG + tig0013664:5805-5824 Msa1353550:intergenic 45.0%
GACGTTGAGTGATCGCTTAT+TGG + tig0013664:5881-5900 Msa1353550:intergenic 45.0%
CGAGTCAACAGAAGAAGTTG+CGG - tig0013664:5916-5935 Msa1353550:CDS 45.0%
GGACAACCAAGTTCACTATC+CGG - tig0013664:5937-5956 Msa1353550:CDS 45.0%
ACATGGAGGAATGGCCTGAA+TGG - tig0013664:2861-2880 Msa1353550:CDS 50.0%
! AGAGCACTCAATGCGCCAAA+AGG - tig0013664:3142-3161 Msa1353550:intron 50.0%
CACTCAATGCGCCAAAAGGA+TGG - tig0013664:3146-3165 Msa1353550:intron 50.0%
CAATGCGCCAAAAGGATGGA+TGG - tig0013664:3150-3169 Msa1353550:intron 50.0%
CTGCAAGCCTAAGGAAACTC+CGG + tig0013664:3432-3451 Msa1353550:intergenic 50.0%
TGTAGGTGGATCTAGCACAG+GGG - tig0013664:4027-4046 Msa1353550:intron 50.0%
GTCAAGGACTACACGCTGTT+AGG + tig0013664:4228-4247 Msa1353550:intergenic 50.0%
CCACTTGATCATAGAGGCTC+TGG + tig0013664:4257-4276 Msa1353550:intergenic 50.0%
CCAGAGCCTCTATGATCAAG+TGG - tig0013664:4254-4273 Msa1353550:intron 50.0%
AGACCTTGAAGCATGGACAG+TGG + tig0013664:4327-4346 Msa1353550:intergenic 50.0%
AGCCCTTAGACCTTGAAGCA+TGG + tig0013664:4334-4353 Msa1353550:intergenic 50.0%
AGTTAAGGACTGGGGGGATA+AGG + tig0013664:4440-4459 Msa1353550:intergenic 50.0%
! ATATAAGGTGGTTGGGCTGG+GGG + tig0013664:4463-4482 Msa1353550:intergenic 50.0%
GATATAAGGTGGTTGGGCTG+GGG + tig0013664:4464-4483 Msa1353550:intergenic 50.0%
GAGATATAAGGTGGTTGGGC+TGG + tig0013664:4466-4485 Msa1353550:intergenic 50.0%
GAGACTCTTAGGCAGCTTGT+TGG - tig0013664:5320-5339 Msa1353550:intron 50.0%
CTTTGCCGCTAGAGAATTGC+AGG - tig0013664:5344-5363 Msa1353550:intron 50.0%
CGCTAGAGAATTGCAGGTTC+AGG - tig0013664:5350-5369 Msa1353550:intron 50.0%
TCCAACAGATGCTAAGGCTG+AGG - tig0013664:5709-5728 Msa1353550:intron 50.0%
TAATGCTGCCCAGTTGTCTG+TGG - tig0013664:5736-5755 Msa1353550:intron 50.0%
AACCAAGGCCACAGACAACT+GGG + tig0013664:5747-5766 Msa1353550:intergenic 50.0%
CAACCAAGTTCACTATCCGG+TGG - tig0013664:5940-5959 Msa1353550:CDS 50.0%
GCGCCAAAAGGATGGATGGA+AGG - tig0013664:3154-3173 Msa1353550:intron 55.0%
! AAAACTTTGGGGGGTGGGGA+AGG - tig0013664:3527-3546 Msa1353550:intron 55.0%
! AAACTTTGGGGGGTGGGGAA+GGG - tig0013664:3528-3547 Msa1353550:intron 55.0%
! GAGGCTCTGGTAGCATGTCA+AGG + tig0013664:4244-4263 Msa1353550:intergenic 55.0%
CTGCCCAGCATAAGGTTTGG+TGG - tig0013664:4295-4314 Msa1353550:intron 55.0%
GGGCCACCAAACCTTATGCT+GGG + tig0013664:4301-4320 Msa1353550:intergenic 55.0%
TGGGCCACCAAACCTTATGC+TGG + tig0013664:4302-4321 Msa1353550:intergenic 55.0%
TGGGGGGATAAGGAGGTTGT+GGG + tig0013664:4430-4449 Msa1353550:intergenic 55.0%
TAAGGACTGGGGGGATAAGG+AGG + tig0013664:4437-4456 Msa1353550:intergenic 55.0%
ATTATTGCTGCAGCTGCGGC+TGG - tig0013664:5665-5684 Msa1353550:CDS 55.0%
GCCTCAGCCTTAGCATCTGT+TGG + tig0013664:5713-5732 Msa1353550:intergenic 55.0%
CAACCAAGGCCACAGACAAC+TGG + tig0013664:5748-5767 Msa1353550:intergenic 55.0%
GAGCCACCGGATAGTGAACT+TGG + tig0013664:5946-5965 Msa1353550:intergenic 55.0%
AGTTCACTATCCGGTGGCTC+AGG - tig0013664:5946-5965 Msa1353550:CDS 55.0%
! AACTTTGGGGGGTGGGGAAG+GGG - tig0013664:3529-3548 Msa1353550:intron 60.0%
GCACAGGGGAACAGCGAGTA+AGG - tig0013664:4041-4060 Msa1353550:intron 60.0%
CTGGGGGGATAAGGAGGTTG+TGG + tig0013664:4431-4450 Msa1353550:intergenic 60.0%
TGGGGGAGTTAAGGACTGGG+GGG + tig0013664:4446-4465 Msa1353550:intergenic 60.0%
CTGGGGGAGTTAAGGACTGG+GGG + tig0013664:4447-4466 Msa1353550:intergenic 60.0%
GCTGGGGGAGTTAAGGACTG+GGG + tig0013664:4448-4467 Msa1353550:intergenic 60.0%
GGCTGGGGGAGTTAAGGACT+GGG + tig0013664:4449-4468 Msa1353550:intergenic 60.0%
! TGGTTGGGCTGGGGGAGTTA+AGG + tig0013664:4455-4474 Msa1353550:intergenic 60.0%
TGCCCAGTTGTCTGTGGCCT+TGG - tig0013664:5742-5761 Msa1353550:intron 60.0%
TCACTATCCGGTGGCTCAGG+CGG - tig0013664:5949-5968 Msa1353550:CDS 60.0%
! ACTTTGGGGGGTGGGGAAGG+GGG - tig0013664:3530-3549 Msa1353550:intron 65.0%
GGGCTGGGGGAGTTAAGGAC+TGG + tig0013664:4450-4469 Msa1353550:intergenic 65.0%
!! TGCGGCTGGTGTTGCTGCTG+AGG - tig0013664:5679-5698 Msa1353550:CDS 65.0%
!! GCGGCTGGTGTTGCTGCTGA+GGG - tig0013664:5680-5699 Msa1353550:CDS 65.0%
AGGGTTTCCGCCTGAGCCAC+CGG + tig0013664:5959-5978 Msa1353550:intergenic 65.0%
GGGGGGTGGGGAAGGGGGTT+AGG - tig0013664:3535-3554 Msa1353550:intron 75.0%
Chromosome Type Strat End Strand Name
tig0013664 gene 2803 5982 2803 ID=Msa1353550;Name=Msa1353550
tig0013664 mRNA 2803 5982 2803 ID=Msa1353550-mRNA-1;Parent=Msa1353550;Name=Msa1353550-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0.8|1|1|1|5|0|235
tig0013664 exon 2803 3126 2803 ID=Msa1353550-mRNA-1:exon:8729;Parent=Msa1353550-mRNA-1
tig0013664 exon 3414 3495 3414 ID=Msa1353550-mRNA-1:exon:8728;Parent=Msa1353550-mRNA-1
tig0013664 exon 4723 4799 4723 ID=Msa1353550-mRNA-1:exon:8727;Parent=Msa1353550-mRNA-1
tig0013664 exon 5610 5723 5610 ID=Msa1353550-mRNA-1:exon:8726;Parent=Msa1353550-mRNA-1
tig0013664 exon 5872 5982 5872 ID=Msa1353550-mRNA-1:exon:8725;Parent=Msa1353550-mRNA-1
tig0013664 CDS 5872 5982 5872 ID=Msa1353550-mRNA-1:cds;Parent=Msa1353550-mRNA-1
tig0013664 CDS 5610 5723 5610 ID=Msa1353550-mRNA-1:cds;Parent=Msa1353550-mRNA-1
tig0013664 CDS 4723 4799 4723 ID=Msa1353550-mRNA-1:cds;Parent=Msa1353550-mRNA-1
tig0013664 CDS 3414 3495 3414 ID=Msa1353550-mRNA-1:cds;Parent=Msa1353550-mRNA-1
tig0013664 CDS 2803 3126 2803 ID=Msa1353550-mRNA-1:cds;Parent=Msa1353550-mRNA-1
Gene Sequence

>Msa1353550

TTTCAGGATCTTCTATTCTTGGCTTGCAGTCATCCTGAAAATAGAAACAGTATGATAAACATGGAGGAATGGCCTGAATGGATTTTGGAAATCCTGATCTCAAGCTATGAGGTGGGTCCAAGCAAATTGTCTGATTCAACAAGTGTCGGAGACGTAGAAGACCTGATTCATAACTTCCTAATTATCATGCTAGAGCACTCAATGCGCCAAAAGGATGGATGGAAGGATATAGAAGCAACAATTCATTGTGCAGAGTGGCTTTCTATTGTAGGTGGATCTAGCACAGGGGAACAGCGAGTAAGGCGTGAAGAATCGTTGCCTATATTTAAAAGGAGACTCTTAGGCAGCTTGTTGGACTTTGCCGCTAGAGAATTGCAGGTTCAGACTCAAATTATTGCTGCAGCTGCGGCTGGTGTTGCTGCTGAGGGATTGTCTCCAACAGATGCTAAGGCTGAGGCTGATAATGCTGCCCAGTTGTCTGTGGCCTTGGTTGAGAATGCCATTGTGATACTTATGCTTGTTGAAGACCATTTACGGTTGCAGAGCAAACAATCTTCTTCACGCACTGCAGATATATCTCCATCTCCACTTACTACTTTGTATCCAATAAGCGATCACTCAACGTCATTGTCAACAATTGACGAGTCAACAGAAGAAGTTGCGGACAACCAAGTTCACTATCCGGTGGCTCAGGCGGAAACCCTCTAG

Protein sequence

>Msa1353550

FQDLLFLACSHPENRNSMINMEEWPEWILEILISSYEVGPSKLSDSTSVGDVEDLIHNFLIIMLEHSMRQKDGWKDIEATIHCAEWLSIVGGSSTGEQRVRREESLPIFKRRLLGSLLDFAARELQVQTQIIAAAAAGVAAEGLSPTDAKAEADNAAQLSVALVENAIVILMLVEDHLRLQSKQSSSRTADISPSPLTTLYPISDHSTSLSTIDESTEEVADNQVHYPVAQAETL*