AlfalfaGEDB | Msa0943750

M. sativa cultivar zhongmu-4 / Msa0943750

KEGG: K13496
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006629 GO:0008150 GO:0008152 GO:0008194 GO:0008202 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009628 GO:0009636 GO:0009812 GO:0009813 GO:0010224 GO:0010817 GO:0016128 GO:0016131 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0042221 GO:0042440 GO:0042445 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044464 GO:0046148 GO:0046527 GO:0050403 GO:0050502 GO:0050896 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0071704 GO:0080043 GO:0080044 GO:0080046 GO:0098754 GO:1901360 GO:1901576 GO:1901615 GO:1901617
PFAM: PF00201.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0943750	XP_003625715.1	43.357	286	93	8	11	227	9	294	8.90e-52	199
Msa0943750	XP_003625715.1	94.036	503	30	0	225	727	1	503	0.0	995

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0943750	sp\|Q9ZQ99\|U73C1_ARATH	55.123	488	214	4	225	710	1	485	0.0	563
Msa0943750	sp\|Q9ZQ99\|U73C1_ARATH	39.223	283	106	4	11	227	10	292	1.39e-54	198

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0143210	Msa0943750	0.811584	6.508897e-51	-8.615850e-47
Msa0943750	Msa1002660	0.813599	2.359599e-51	-8.615850e-47
Msa0943750	Msa1093430	0.853931	1.724119e-61	-8.615850e-47
Msa0943750	Msa1124180	0.943865	5.554035e-103	-8.615850e-47
Msa0943750	Msa1125610	0.802051	6.739858e-49	-8.615850e-47
Msa0943750	Msa1164650	0.805552	1.263334e-49	-8.615850e-47
Msa0943750	Msa1167820	0.813747	2.188395e-51	-8.615850e-47
Msa0943750	Msa1386190	0.814874	1.233515e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0943750	MtrunA17_Chr7g0265051	94.036	503	30	0	225	727	1	503	0.0	995
Msa0943750	MtrunA17_Chr7g0265051	43.357	286	93	8	11	227	9	294	8.19e-56	199
Msa0943750	MtrunA17_Chr7g0265101	84.158	505	78	2	225	727	1	505	0.0	892
Msa0943750	MtrunA17_Chr7g0265101	43.056	288	93	9	11	227	9	296	2.81e-55	197
Msa0943750	MtrunA17_Chr4g0011051	78.702	493	101	3	225	713	1	493	0.0	812
Msa0943750	MtrunA17_Chr4g0011051	44.097	288	90	9	11	227	9	296	1.20e-57	204
Msa0943750	MtrunA17_Chr7g0265151	59.798	495	188	8	225	714	1	489	0.0	605
Msa0943750	MtrunA17_Chr7g0265151	41.549	284	98	8	11	227	9	291	2.40e-53	191
Msa0943750	MtrunA17_Chr7g0265041	58.367	490	194	7	232	715	10	495	0.0	574
Msa0943750	MtrunA17_Chr7g0265041	73.559	295	10	4	1	227	1	295	1.55e-132	401

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0943750	AT2G36750.1	55.123	488	214	4	225	710	1	485	0.0	563
Msa0943750	AT2G36750.1	39.223	283	106	4	11	227	10	292	1.42e-55	198
Msa0943750	AT2G36800.1	56.936	483	198	6	233	710	12	489	0.0	561
Msa0943750	AT2G36800.1	38.514	296	113	6	1	227	1	296	1.41e-51	187
Msa0943750	AT2G36760.1	54.938	486	210	7	230	711	11	491	0.0	550
Msa0943750	AT2G36760.1	38.811	286	104	7	11	227	14	297	4.89e-50	183
Msa0943750	AT2G36780.1	54.752	484	212	6	230	710	11	490	0.0	548
Msa0943750	AT2G36780.1	38.811	286	104	6	11	227	14	297	2.18e-51	187
Msa0943750	AT2G36790.1	56.057	487	204	7	229	710	8	489	0.0	539
Msa0943750	AT2G36790.1	39.437	284	105	7	11	227	13	296	4.14e-52	189

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Find 121 sgRNAs with CRISPR-Local

Find 475 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGGCCATGTAACCAT+TGG	0.565009	6_3:+19710341	None:intergenic
AAACAAGTTGGATTACCAGA+TGG	0.606732	6_3:-19717963	Msa0943750:CDS
AAAGAGTCTGGATTACCAGA+AGG	0.592502	6_3:-19711274	Msa0943750:CDS
AAAGTGGGGCTTTGGATCTT+GGG	0.379422	6_3:+19711489	None:intergenic
AAATGGGGTGAAGAAGAGGA+TGG	0.662496	6_3:-19710239	Msa0943750:CDS
AAATGTTGGTGTGAAAATTG+GGG	0.617684	6_3:-19710276	Msa0943750:CDS
AACAACACAAAGTGGGGCTT+TGG	0.362259	6_3:+19711481	None:intergenic
AACATTGCACAGACAGGAAT+AGG	0.368421	6_3:-19710932	Msa0943750:CDS
AAGAAGGAAGATATTGAAAG+AGG	0.502783	6_3:-19710206	Msa0943750:CDS
AAGAGGAATAGAGAGGTTAA+TGG	0.329634	6_3:-19710189	Msa0943750:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTATTTCCCTTAATAGCACA+AGG	-	chr6_3:19710046-19710065	Msa0943750:CDS	30.0%
AAATCAGAGATAATGCAACT+TGG	+	chr6_3:19710379-19710398	None:intergenic	30.0%
GAAGCTGAAATGAAATCATA+TGG	-	chr6_3:19710646-19710665	Msa0943750:CDS	30.0%
AGGTAAGAAATGATAAGGTT+TGG	-	chr6_3:19710725-19710744	Msa0943750:CDS	30.0%
CAACAAAGATGGTTTAGATA+AGG	-	chr6_3:19710771-19710790	Msa0943750:CDS	30.0%
TCCTTCACAACTTATTGAAT+TGG	-	chr6_3:19710906-19710925	Msa0943750:CDS	30.0%
TCCCTAATAACCCAAATAAA+TGG	+	chr6_3:19710958-19710977	None:intergenic	30.0%
AAAGTGAAGAGTTGGAAAAA+TGG	-	chr6_3:19710989-19711008	Msa0943750:CDS	30.0%
GATTAGTGATGAAAAGTTTG+AGG	-	chr6_3:19711011-19711030	Msa0943750:CDS	30.0%
AAGTTTGAGGAAAGGAATAA+AGG	-	chr6_3:19711024-19711043	Msa0943750:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	19710007	19718210	19710007	ID=Msa0943750;Name=Msa0943750
chr6_3	mRNA	19710007	19718210	19710007	ID=Msa0943750-mRNA-1;Parent=Msa0943750;Name=Msa0943750-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0\|0\|0\|1\|0\|0\|5\|0\|727
chr6_3	exon	19718060	19718210	19718060	ID=Msa0943750-mRNA-1:exon:5930;Parent=Msa0943750-mRNA-1
chr6_3	exon	19717896	19718047	19717896	ID=Msa0943750-mRNA-1:exon:5929;Parent=Msa0943750-mRNA-1
chr6_3	exon	19717509	19717721	19717509	ID=Msa0943750-mRNA-1:exon:5928;Parent=Msa0943750-mRNA-1
chr6_3	exon	19717341	19717490	19717341	ID=Msa0943750-mRNA-1:exon:5927;Parent=Msa0943750-mRNA-1
chr6_3	exon	19710007	19711524	19710007	ID=Msa0943750-mRNA-1:exon:5926;Parent=Msa0943750-mRNA-1
chr6_3	CDS	19718060	19718210	19718060	ID=Msa0943750-mRNA-1:cds;Parent=Msa0943750-mRNA-1
chr6_3	CDS	19717896	19718047	19717896	ID=Msa0943750-mRNA-1:cds;Parent=Msa0943750-mRNA-1
chr6_3	CDS	19717509	19717721	19717509	ID=Msa0943750-mRNA-1:cds;Parent=Msa0943750-mRNA-1
chr6_3	CDS	19717341	19717490	19717341	ID=Msa0943750-mRNA-1:cds;Parent=Msa0943750-mRNA-1
chr6_3	CDS	19710007	19711524	19710007	ID=Msa0943750-mRNA-1:cds;Parent=Msa0943750-mRNA-1

Gene Sequence

>Msa0943750

ATGGTTTTGCAAGCAAACATTAATGCTCCACACTTTGTGTTATTTCCCTTAATAGCACAAGGCCACATTATCCCAATGATAGACATAGCAAAACTCTTAGCACAACGTGGTGTTATTGTTACCATATTCACTACACCAAAAAATGCATCACTTCTTTCTCGTGCTGTTTCTTCTGGCCTTCAAATCAAACTTGTAACCCTAAATTTTCCATCAAAACAAGTTGGATTACCAGATGGTTGCGAGAATTTCGACATGGTTAACATTTCAAAAGACATGAATATGATGTACAATCTATTCCATGCAGTACACACTTCAAATATTCTTGAAAGCATCAATTCAGAAACAGAGTTTTTCTCTATTCCTGGCATACCTGACAAAATTCAAGTCACAAAAGAACAGATACCAGGAACAGTGAAAGAGGAAAAGATGAAGGGGTTTGCTGAGAAAATGCAAGAAGCTGAAATGAAATCATATGGTGTAATCATAAACAGTTTTGAGGAGTTAGAGAAAGAATATGTAAGAAATGATAAGGTTTGGTGTGTTGGTCCTGTTGCACTTTGCAACAAAGATGGTTTAGATAAGGCTCAAAGAGGTAACATTGCTTCAATAAGTGAACATAATTGTTTAAAGTTTCTAGATTTGCATAAACCAAAATCTGTTGTTTATGAACATATGGCATCCCAAGATCCAAAGCCCCACTTTGTGTTGTTTCCAATGATGGCACAAGGTCACATGATCCCAATGATGGACATAGCCAAAATATTGGCACAAAATCACAATGTTATTGTTACAATAGTAACCACCCCACACAATGCATCTCGTTACACATCAATCCTAGCACGTTATGTTGAATCTGGTCTTCATATTCAATTAGTTCAACTTCAATTTCCATGTAAAGAGTCTGGATTACCAGAAGGGTGTGAGAATCTTGACATGCTACCTTCACTTGGTGCAGCCACAAATTTCTTCAATTCATCAAAATTTCTACAACAAGAAGTTGAAAAGTTATTTGAAGAGTTAACACCACCACCAACTTGCATTATCTCTGATATGTGTTTGCCATATACAATTCACGTAGCTAGAAAGTTCAATATTCCAAGAATTTCTTTTGGTGGAATAAATTGCTTCTATCTTTTGTGCATGCATAATGCACATGTCAATAATATTAAAGAAACCATGGCTAATAATGAATTTGAATACTTTGATGTGCCTGGTATTCCTGATAAAATTGAAATTAACATTGCACAGACAGGAATAGGATTAAAGGGTGAAGCTTGGGAACAATTTAGTAGTGATTTGGCTCAAGCTGAAATGGGTACTTATGGTGTAATCATGAATTCTTTTGAAGAGTTAGAGCCAGCATATGCAAAGGAATATAAAAAGATAAAAAATGACAAAGTTTGGTGTATTGGTCCTGTATCCCTTAGTAACACTGATTACTTGGATAAGATTCAAAGAGGTAATAATAATAAAGTTTCAATTGATGAATGGGAGCACTTGAAGTGGCTTGATTCTCAGAAACAAGGGAGTGTTCTCTATGCATGCCTTGGAAGTTTATGCAATATAACACCACTACAGTTGATAGAGCTTGGTTTAGCATTAGAAGCAACAAAAAGACCTTTTATTTGGGTTTTAAGAGAAGGAAATGAATTAGAAGAATTCAAAAAATGGATTGATGAAAGTGGATTTGAGGAAAGAATCAATGATAGAGGCCTAGTGATTAAGGGTTGGGCTCCTCAGTTATTGATATTGTCGCATTATGCAATTGGAGGATTCTTAACACATTGTGGTTGGAATTCTACTCTTGAAGCAATATGTGCTGGTGTGCCAATGGTTACATGGCCACTTTTTGCGGACCAATTTTTGAATGAATGTTTAGTTGTACAAATATTAAATGTTGGTGTGAAAATTGGGGTGAAGAGTCCAATGAAATGGGGTGAAGAAGAGGATGGTGTGTTGGTAAAGAAGGAAGATATTGAAAGAGGAATAGAGAGGTTAATGGATGAGACAAGTGAATGTAAAGAAAGAAGAAAAAGGATTAGAGAGCTTGCTATGATGGCTAAAAAGGCTGTAGAAAAAGGTGGATCTTCTCACTCTAATGTTTCTTTGTTCATCCAAGATATCATGAAGAAAAATAAAGATATGATGTCATCATTTGCCAATGGAAATGCCAATTCAAAATGA

Protein sequence

>Msa0943750

MVLQANINAPHFVLFPLIAQGHIIPMIDIAKLLAQRGVIVTIFTTPKNASLLSRAVSSGLQIKLVTLNFPSKQVGLPDGCENFDMVNISKDMNMMYNLFHAVHTSNILESINSETEFFSIPGIPDKIQVTKEQIPGTVKEEKMKGFAEKMQEAEMKSYGVIINSFEELEKEYVRNDKVWCVGPVALCNKDGLDKAQRGNIASISEHNCLKFLDLHKPKSVVYEHMASQDPKPHFVLFPMMAQGHMIPMMDIAKILAQNHNVIVTIVTTPHNASRYTSILARYVESGLHIQLVQLQFPCKESGLPEGCENLDMLPSLGAATNFFNSSKFLQQEVEKLFEELTPPPTCIISDMCLPYTIHVARKFNIPRISFGGINCFYLLCMHNAHVNNIKETMANNEFEYFDVPGIPDKIEINIAQTGIGLKGEAWEQFSSDLAQAEMGTYGVIMNSFEELEPAYAKEYKKIKNDKVWCIGPVSLSNTDYLDKIQRGNNNKVSIDEWEHLKWLDSQKQGSVLYACLGSLCNITPLQLIELGLALEATKRPFIWVLREGNELEEFKKWIDESGFEERINDRGLVIKGWAPQLLILSHYAIGGFLTHCGWNSTLEAICAGVPMVTWPLFADQFLNECLVVQILNVGVKIGVKSPMKWGEEEDGVLVKKEDIERGIERLMDETSECKERRKRIRELAMMAKKAVEKGGSSHSNVSLFIQDIMKKNKDMMSSFANGNANSK*