AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1002660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1002660 MtrunA17_Chr7g0265101 92.308 507 37 2 1 507 1 505 0.0 965
Msa1002660 MtrunA17_Chr7g0265051 81.657 507 89 3 1 507 1 503 0.0 862
Msa1002660 MtrunA17_Chr4g0011051 79.633 491 97 2 1 490 1 489 0.0 814
Msa1002660 MtrunA17_Chr7g0265151 60.966 497 183 7 1 494 1 489 0.0 600
Msa1002660 MtrunA17_Chr7g0265041 57.114 492 199 7 9 495 11 495 0.0 558
Msa1002660 MtrunA17_Chr7g0275681 57.438 484 193 7 9 491 12 483 0.0 550
Msa1002660 MtrunA17_Chr5g0419761 50.304 493 236 6 1 490 1 487 3.69e-172 494
Msa1002660 MtrunA17_Chr1g0179901 47.262 493 248 6 3 490 10 495 2.46e-164 474
Msa1002660 MtrunA17_Chr5g0419771 46.407 487 250 6 8 490 35 514 5.00e-158 459
Msa1002660 MtrunA17_Chr7g0265111 49.695 491 234 7 8 493 38 520 2.40e-153 448
Msa1002660 MtrunA17_Chr7g0265141 47.862 491 245 7 1 487 1 484 9.23e-152 442
Msa1002660 MtrunA17_Chr8g0366391 39.798 495 273 12 1 488 1 477 1.97e-114 347
Msa1002660 MtrunA17_Chr4g0044501 39.794 485 270 10 8 488 9 475 7.79e-114 345
Msa1002660 MtrunA17_Chr4g0044511 38.306 496 283 12 1 492 32 508 2.64e-111 339
Msa1002660 MtrunA17_Chr7g0243931 38.878 499 281 10 7 495 15 499 2.91e-108 331
Msa1002660 MtrunA17_Chr5g0416741 37.967 482 288 7 8 488 12 483 1.45e-105 324
Msa1002660 MtrunA17_Chr5g0401851 37.526 485 293 7 6 488 7 483 2.54e-104 321
Msa1002660 MtrunA17_Chr4g0066151 37.751 498 266 13 4 488 13 479 5.08e-104 320
Msa1002660 MtrunA17_Chr4g0066221 36.821 497 286 11 2 490 6 482 9.55e-104 319
Msa1002660 MtrunA17_Chr6g0463891 38.540 493 272 11 8 488 11 484 3.53e-103 318
Msa1002660 MtrunA17_Chr7g0243631 37.349 498 290 9 7 495 11 495 7.87e-103 317
Msa1002660 MtrunA17_Chr7g0243951 37.275 499 288 11 7 495 9 492 3.04e-102 315
Msa1002660 MtrunA17_Chr7g0243681 35.872 499 291 11 7 495 9 488 3.14e-102 315
Msa1002660 MtrunA17_Chr7g0243861 37.959 490 282 9 7 488 12 487 2.81e-101 313
Msa1002660 MtrunA17_Chr4g0066261 37.271 491 279 13 7 488 11 481 3.06e-101 313
Msa1002660 MtrunA17_Chr7g0243871 36.454 502 275 12 1 488 1 472 3.55e-100 310
Msa1002660 MtrunA17_Chr8g0355221 37.255 510 296 11 2 507 8 497 8.97e-100 309
Msa1002660 MtrunA17_Chr4g0066131 35.857 502 281 14 4 494 8 479 3.24e-99 307
Msa1002660 MtrunA17_Chr4g0044521 37.320 485 270 14 7 486 9 464 5.86e-98 303
Msa1002660 MtrunA17_Chr7g0243771 37.298 496 277 13 5 488 2 475 1.05e-96 301
Msa1002660 MtrunA17_Chr4g0060511 35.503 507 290 15 7 495 9 496 1.11e-96 301
Msa1002660 MtrunA17_Chr7g0243781 35.583 489 300 6 1 488 1 475 4.07e-96 299
Msa1002660 MtrunA17_Chr7g0235051 36.289 485 264 11 7 487 9 452 1.52e-95 297
Msa1002660 MtrunA17_Chr4g0066281 36.308 493 271 13 7 491 12 469 5.35e-95 296
Msa1002660 MtrunA17_Chr4g0066171 34.809 497 284 14 2 490 14 478 6.15e-95 296
Msa1002660 MtrunA17_Chr7g0243801 37.400 500 277 14 1 488 1 476 5.41e-94 294
Msa1002660 MtrunA17_Chr4g0014061 34.560 489 296 10 1 485 1 469 1.17e-93 293
Msa1002660 MtrunA17_Chr6g0463861 34.337 498 290 13 2 490 6 475 4.22e-93 291
Msa1002660 MtrunA17_Chr4g0044481 40.141 426 213 8 1 424 19 404 1.75e-92 288
Msa1002660 MtrunA17_Chr1g0165701 36.253 491 294 11 2 488 8 483 4.53e-92 290
Msa1002660 MtrunA17_Chr2g0294931 35.984 503 292 13 2 495 6 487 8.74e-92 288
Msa1002660 MtrunA17_Chr7g0218311 36.800 500 287 13 2 494 11 488 3.35e-91 287
Msa1002660 MtrunA17_Chr4g0066201 34.545 495 285 13 2 488 11 474 2.28e-89 282
Msa1002660 MtrunA17_Chr8g0374971 33.266 493 298 12 8 490 11 482 4.16e-89 281
Msa1002660 MtrunA17_Chr6g0463851 35.000 500 289 13 2 488 6 482 1.22e-88 280
Msa1002660 MtrunA17_Chr8g0374931 35.388 503 295 13 2 495 6 487 1.29e-88 280
Msa1002660 MtrunA17_Chr5g0416821 36.345 498 273 13 3 488 8 473 4.70e-88 278
Msa1002660 MtrunA17_Chr7g0243761 35.446 505 273 12 3 498 6 466 1.03e-87 277
Msa1002660 MtrunA17_Chr2g0294921 35.484 496 291 13 2 488 155 630 6.87e-87 280
Msa1002660 MtrunA17_Chr5g0428081 34.834 511 276 13 2 490 6 481 7.67e-87 275
Msa1002660 MtrunA17_Chr5g0410941 34.476 496 292 12 2 488 18 489 1.83e-86 275
Msa1002660 MtrunA17_Chr8g0374901 33.333 495 293 13 7 490 12 480 5.85e-86 273
Msa1002660 MtrunA17_Chr7g0243851 34.949 495 264 13 7 495 9 451 4.87e-84 267
Msa1002660 MtrunA17_Chr8g0374941 33.871 496 298 14 7 494 949 1422 6.91e-82 277
Msa1002660 MtrunA17_Chr8g0374941 33.891 478 283 14 7 474 11 465 7.10e-79 269
Msa1002660 MtrunA17_Chr8g0374941 33.263 472 286 13 7 470 476 926 2.67e-72 249
Msa1002660 MtrunA17_Chr8g0350881 32.727 495 305 12 8 494 11 485 6.55e-79 255
Msa1002660 MtrunA17_Chr7g0243811 36.603 418 236 10 21 433 1 394 5.82e-74 239
Msa1002660 MtrunA17_Chr2g0294941 36.915 363 203 7 122 473 17 364 7.33e-71 230
Msa1002660 MtrunA17_Chr5g0420801 30.204 490 302 10 7 490 5 460 5.98e-68 225
Msa1002660 MtrunA17_Chr8g0369341 31.124 498 297 14 7 490 5 470 6.40e-68 226
Msa1002660 MtrunA17_Chr2g0307961 32.049 493 295 14 5 489 9 469 1.62e-64 216
Msa1002660 MtrunA17_Chr5g0440421 29.688 512 316 15 3 490 4 495 1.28e-62 212
Msa1002660 MtrunA17_Chr8g0361411 29.921 508 292 16 2 494 1 459 1.65e-57 197
Msa1002660 MtrunA17_Chr2g0329111 29.752 484 296 15 7 474 4 459 2.25e-56 195
Msa1002660 MtrunA17_Chr7g0243611 37.267 322 166 10 127 439 1 295 3.99e-56 189
Msa1002660 MtrunA17_Chr8g0336331 29.940 501 306 14 7 491 8 479 2.12e-54 190
Msa1002660 MtrunA17_Chr7g0243711 40.000 255 140 8 247 495 78 325 2.13e-54 186
Msa1002660 MtrunA17_Chr3g0078841 30.279 502 304 16 7 491 8 480 3.79e-54 189
Msa1002660 MtrunA17_Chr7g0231631 38.971 272 145 5 218 488 8 259 6.68e-54 182
Msa1002660 MtrunA17_Chr8g0373301 31.601 481 256 17 36 477 9 455 2.25e-53 187
Msa1002660 MtrunA17_Chr4g0050341 31.213 503 286 18 9 485 19 487 4.17e-53 187
Msa1002660 MtrunA17_Chr5g0431361 29.897 485 292 16 9 488 12 453 5.21e-52 183
Msa1002660 MtrunA17_Chr6g0454341 29.354 511 297 17 7 491 8 480 7.96e-52 183
Msa1002660 MtrunA17_Chr5g0431371 29.752 484 291 13 9 488 10 448 1.14e-51 182
Msa1002660 MtrunA17_Chr7g0275511 28.889 495 297 16 6 482 12 469 1.99e-51 182
Msa1002660 MtrunA17_Chr6g0464861 29.234 496 286 19 9 490 11 455 9.44e-51 179
Msa1002660 MtrunA17_Chr8g0377921 30.040 496 293 16 11 489 6 464 1.06e-50 179
Msa1002660 MtrunA17_Chr7g0217881 28.800 500 302 14 5 491 6 464 1.35e-50 179
Msa1002660 MtrunA17_Chr2g0278711 29.541 501 303 16 7 489 9 477 1.96e-50 179
Msa1002660 MtrunA17_Chr8g0335161 29.980 497 287 15 7 482 4 460 1.98e-50 179
Msa1002660 MtrunA17_Chr5g0431401 28.200 500 290 13 3 488 4 448 7.08e-50 177
Msa1002660 MtrunA17_Chr6g0454301 29.762 504 304 17 7 491 261 733 9.29e-50 182
Msa1002660 MtrunA17_Chr6g0454301 34.524 252 133 7 244 489 5 230 5.25e-32 130
Msa1002660 MtrunA17_Chr8g0339461 39.649 285 131 9 217 484 207 467 9.65e-50 177
Msa1002660 MtrunA17_Chr5g0431421 29.532 491 299 13 3 490 4 450 1.10e-49 176
Msa1002660 MtrunA17_Chr5g0448521 28.144 501 307 14 7 489 3 468 1.19e-49 177
Msa1002660 MtrunA17_Chr6g0453951 28.185 518 304 17 3 491 51 529 1.60e-49 178
Msa1002660 MtrunA17_Chr8g0336691 29.495 495 290 17 8 482 918 1373 1.63e-49 183
Msa1002660 MtrunA17_Chr8g0336691 28.144 501 285 18 5 477 9 462 2.69e-48 179
Msa1002660 MtrunA17_Chr8g0336691 28.776 490 262 18 8 477 479 901 1.17e-44 169
Msa1002660 MtrunA17_Chr5g0431441 27.655 499 301 13 9 493 18 470 1.95e-49 176
Msa1002660 MtrunA17_Chr8g0339451 32.982 379 209 11 118 477 100 452 2.09e-49 176
Msa1002660 MtrunA17_Chr6g0462531 28.398 493 284 16 10 477 5 453 2.37e-49 176
Msa1002660 MtrunA17_Chr8g0339631 31.620 389 212 12 118 484 108 464 2.45e-49 176
Msa1002660 MtrunA17_Chr8g0339601 39.711 277 126 8 217 476 66 318 2.47e-49 172
Msa1002660 MtrunA17_Chr6g0464841 29.920 498 281 23 9 490 11 456 3.48e-49 175
Msa1002660 MtrunA17_Chr6g0464881 30.539 501 280 22 9 493 11 459 3.69e-49 175
Msa1002660 MtrunA17_Chr7g0232391 29.779 497 275 22 8 477 5 454 4.03e-49 175
Msa1002660 MtrunA17_Chr8g0336651 28.655 513 297 16 8 496 780 1247 4.15e-49 182
Msa1002660 MtrunA17_Chr8g0336651 26.899 487 301 13 8 477 5 453 1.67e-38 150
Msa1002660 MtrunA17_Chr8g0336651 33.562 292 145 8 190 477 517 763 2.22e-38 150
Msa1002660 MtrunA17_Chr6g0454181 27.930 512 305 15 7 491 8 482 5.34e-49 175
Msa1002660 MtrunA17_Chr7g0243911 40.284 211 121 3 264 472 7 214 8.14e-49 167
Msa1002660 MtrunA17_Chr8g0335141 29.959 484 283 16 12 477 12 457 9.13e-49 174
Msa1002660 MtrunA17_Chr6g0459311 29.899 495 278 18 7 477 11 460 1.17e-48 174
Msa1002660 MtrunA17_Chr8g0347281 30.408 490 270 20 11 477 20 461 1.25e-48 174
Msa1002660 MtrunA17_Chr6g0454261 28.854 506 314 16 4 491 5 482 1.99e-48 174
Msa1002660 MtrunA17_Chr5g0442541 28.346 508 299 19 7 491 3 468 2.47e-48 173
Msa1002660 MtrunA17_Chr1g0173121 27.944 501 288 16 11 490 16 464 2.72e-48 173
Msa1002660 MtrunA17_Chr6g0454401 28.295 516 299 15 7 491 8 483 3.02e-48 173
Msa1002660 MtrunA17_Chr6g0464871 29.209 493 291 21 9 490 23 468 5.42e-48 172
Msa1002660 MtrunA17_Chr6g0454321 29.960 494 282 17 7 474 8 463 7.22e-48 175
Msa1002660 MtrunA17_Chr1g0207971 27.273 506 306 17 2 493 1 458 9.59e-48 171
Msa1002660 MtrunA17_Chr6g0454331 29.468 526 287 21 4 491 2 481 1.17e-47 172
Msa1002660 MtrunA17_Chr6g0462571 28.195 493 282 15 10 477 5 450 1.53e-47 171
Msa1002660 MtrunA17_Chr6g0454291 28.599 521 296 19 4 491 2 479 3.28e-47 170
Msa1002660 MtrunA17_Chr6g0454151 29.480 519 294 21 4 492 5 481 4.04e-47 170
Msa1002660 MtrunA17_Chr8g0347271 30.658 486 272 21 12 477 22 462 5.18e-47 170
Msa1002660 MtrunA17_Chr7g0232401 28.745 494 286 17 8 477 5 456 5.91e-47 169
Msa1002660 MtrunA17_Chr6g0449931 28.600 500 291 17 7 482 4 461 6.27e-47 169
Msa1002660 MtrunA17_Chr8g0357361 43.137 204 105 5 217 419 61 254 9.36e-47 164
Msa1002660 MtrunA17_Chr6g0454361 29.688 512 296 18 7 491 9 483 1.00e-46 169
Msa1002660 MtrunA17_Chr5g0442561 26.834 518 301 20 7 491 3 475 1.33e-46 169
Msa1002660 MtrunA17_Chr6g0454141 28.571 511 303 16 7 491 8 482 1.69e-46 169
Msa1002660 MtrunA17_Chr5g0426431 29.980 507 293 20 9 491 12 480 2.04e-46 168
Msa1002660 MtrunA17_Chr7g0232411 28.571 504 282 20 8 482 5 459 2.60e-46 168
Msa1002660 MtrunA17_Chr1g0159551 27.291 491 295 14 14 490 19 461 5.84e-46 167
Msa1002660 MtrunA17_Chr6g0454201 30.633 395 219 11 119 491 122 483 9.75e-46 166
Msa1002660 MtrunA17_Chr5g0442491 27.767 515 302 17 7 491 3 477 1.09e-45 166
Msa1002660 MtrunA17_Chr3g0112761 29.225 503 274 17 9 489 8 450 1.58e-45 165
Msa1002660 MtrunA17_Chr1g0161351 28.684 509 303 18 1 488 28 497 1.67e-45 166
Msa1002660 MtrunA17_Chr6g0486251 29.158 487 282 18 12 477 9 453 1.71e-45 166
Msa1002660 MtrunA17_Chr6g0486201 29.158 487 282 18 12 477 9 453 1.71e-45 166
Msa1002660 MtrunA17_Chr8g0334861 29.719 498 274 18 7 477 4 452 1.92e-45 166
Msa1002660 MtrunA17_Chr8g0377941 30.311 386 229 11 117 492 110 465 2.48e-45 165
Msa1002660 MtrunA17_Chr6g0454191 27.103 535 289 16 3 491 4 483 2.50e-45 165
Msa1002660 MtrunA17_Chr5g0414321 27.593 511 291 18 3 493 5 456 2.96e-45 165
Msa1002660 MtrunA17_Chr8g0361371 27.545 501 293 15 4 477 2 459 3.78e-45 165
Msa1002660 MtrunA17_Chr6g0462551 27.733 494 286 18 10 477 5 453 4.36e-45 165
Msa1002660 MtrunA17_Chr6g0462521 28.542 480 286 14 10 477 5 439 4.61e-45 164
Msa1002660 MtrunA17_Chr1g0207831 27.647 510 308 19 1 492 1 467 8.05e-45 164
Msa1002660 MtrunA17_Chr5g0414331 28.247 485 295 15 8 485 12 450 8.13e-45 164
Msa1002660 MtrunA17_Chr7g0232341 28.745 494 283 19 9 477 6 455 8.36e-45 164
Msa1002660 MtrunA17_Chr1g0207951 29.225 503 293 17 1 488 116 570 1.09e-44 169
Msa1002660 MtrunA17_Chr1g0207951 26.389 504 318 17 1 491 648 1111 3.79e-40 155
Msa1002660 MtrunA17_Chr4g0053501 28.094 509 300 18 8 496 10 472 1.39e-44 164
Msa1002660 MtrunA17_Chr3g0118671 28.125 512 304 19 5 490 2 475 1.60e-44 163
Msa1002660 MtrunA17_Chr6g0464921 29.124 491 291 16 9 488 11 455 1.76e-44 162
Msa1002660 MtrunA17_Chr7g0250001 28.317 505 282 22 7 490 4 449 2.07e-44 162
Msa1002660 MtrunA17_Chr2g0302991 28.008 507 297 21 7 490 3 464 2.09e-44 162
Msa1002660 MtrunA17_Chr3g0098111 27.866 506 316 16 1 491 1 472 2.37e-44 162
Msa1002660 MtrunA17_Chr6g0454121 30.155 388 238 10 115 491 116 481 2.50e-44 162
Msa1002660 MtrunA17_Chr5g0429711 27.455 499 293 19 10 488 12 461 3.47e-44 162
Msa1002660 MtrunA17_Chr8g0370941 25.794 535 320 16 9 505 8 503 3.51e-44 163
Msa1002660 MtrunA17_Chr5g0442601 28.291 509 309 18 7 491 402 878 3.65e-44 167
Msa1002660 MtrunA17_Chr5g0442601 29.545 308 166 11 121 414 63 333 8.73e-25 108
Msa1002660 MtrunA17_Chr3g0092641 28.767 511 290 22 9 489 12 478 3.90e-44 162
Msa1002660 MtrunA17_Chr6g0454351 27.853 517 294 18 1 491 4 467 6.31e-44 161
Msa1002660 MtrunA17_Chr5g0442521 26.654 514 310 16 7 491 3 478 6.94e-44 161
Msa1002660 MtrunA17_Chr3g0079731 34.932 292 145 9 217 486 210 478 9.80e-44 161
Msa1002660 MtrunA17_Chr8g0382021 27.328 494 300 17 14 490 39 490 1.53e-43 160
Msa1002660 MtrunA17_Chr7g0232331 28.252 492 288 18 9 477 6 455 1.69e-43 160
Msa1002660 MtrunA17_Chr3g0118691 27.435 503 323 14 2 490 10 484 1.76e-43 160
Msa1002660 MtrunA17_Chr5g0442511 27.647 510 288 18 2 488 42 493 1.78e-43 160
Msa1002660 MtrunA17_Chr4g0066141 45.614 171 79 5 325 488 188 351 1.79e-43 157
Msa1002660 MtrunA17_Chr4g0066141 29.167 192 115 5 39 229 9 180 1.66e-16 81.3
Msa1002660 MtrunA17_Chr3g0118701 27.344 512 316 18 2 492 10 486 2.24e-43 160
Msa1002660 MtrunA17_Chr3g0122001 26.824 507 304 16 9 488 486 952 2.36e-43 164
Msa1002660 MtrunA17_Chr3g0122001 29.351 385 241 11 119 488 105 473 4.42e-43 164
Msa1002660 MtrunA17_Chr3g0118771 28.205 507 312 16 3 490 17 490 2.88e-43 160
Msa1002660 MtrunA17_Chr1g0207861 28.543 501 303 17 9 491 8 471 2.88e-43 160
Msa1002660 MtrunA17_Chr1g0153451 26.613 496 300 19 8 482 5 457 3.07e-43 159
Msa1002660 MtrunA17_Chr8g0359821 27.168 519 298 19 7 491 8 480 5.03e-43 159
Msa1002660 MtrunA17_Chr6g0454131 27.416 507 313 16 7 491 8 481 5.54e-43 159
Msa1002660 MtrunA17_Chr8g0336741 27.327 505 312 16 7 496 11 475 7.66e-43 158
Msa1002660 MtrunA17_Chr3g0118711 27.432 514 305 17 7 492 11 484 8.34e-43 159
Msa1002660 MtrunA17_Chr2g0302961 27.000 500 314 19 7 490 3 467 8.58e-43 158
Msa1002660 MtrunA17_Chr6g0453961 27.668 506 317 17 6 491 16 492 8.86e-43 159
Msa1002660 MtrunA17_Chr3g0112771 27.105 487 299 15 11 489 14 452 1.14e-42 157
Msa1002660 MtrunA17_Chr5g0429681 26.327 490 299 18 7 477 42 488 1.30e-42 158
Msa1002660 MtrunA17_Chr3g0106231 27.756 508 283 18 4 490 9 453 1.66e-42 157
Msa1002660 MtrunA17_Chr6g0462541 25.749 501 286 15 10 477 5 452 3.33e-42 157
Msa1002660 MtrunA17_Chr8g0336731 28.398 493 296 17 11 485 34 487 3.36e-42 157
Msa1002660 MtrunA17_Chr5g0442581 28.046 517 308 19 7 495 3 483 4.38e-42 157
Msa1002660 MtrunA17_Chr8g0365811 27.327 505 312 16 7 493 495 962 9.21e-42 160
Msa1002660 MtrunA17_Chr8g0365811 27.273 429 270 12 8 417 8 413 3.87e-35 140
Msa1002660 MtrunA17_Chr3g0121991 27.921 505 301 18 9 488 79 545 1.21e-41 156
Msa1002660 MtrunA17_Chr6g0452771 28.994 507 306 18 7 491 8 482 1.45e-41 155
Msa1002660 MtrunA17_Chr5g0412101 28.657 499 305 18 9 492 12 474 2.05e-41 154
Msa1002660 MtrunA17_Chr6g0454211 28.433 517 302 18 4 491 292 769 3.12e-41 157
Msa1002660 MtrunA17_Chr6g0454211 31.383 188 90 6 205 391 87 236 4.11e-19 90.9
Msa1002660 MtrunA17_Chr8g0339441 43.192 213 95 5 279 477 218 418 3.31e-41 153
Msa1002660 MtrunA17_Chr5g0412131 29.102 512 285 20 9 492 12 473 4.32e-41 154
Msa1002660 MtrunA17_Chr7g0249931 26.733 505 290 17 8 490 39 485 4.84e-41 154
Msa1002660 MtrunA17_Chr8g0334851 37.011 281 137 10 219 484 210 465 7.38e-41 153
Msa1002660 MtrunA17_Chr8g0380531 28.398 493 297 18 8 488 9 457 8.68e-41 152
Msa1002660 MtrunA17_Chr4g0053321 27.435 503 317 18 1 492 18 483 2.33e-40 152
Msa1002660 MtrunA17_Chr5g0423981 27.586 493 298 19 6 491 7 447 2.42e-40 151
Msa1002660 MtrunA17_Chr8g0334831 26.824 507 292 17 7 477 4 467 3.78e-40 151
Msa1002660 MtrunA17_Chr6g0454221 37.037 243 130 6 247 487 8 229 5.15e-40 146
Msa1002660 MtrunA17_Chr7g0218791 26.978 493 283 19 9 481 5 440 6.27e-40 150
Msa1002660 MtrunA17_Chr7g0232311 26.441 503 284 18 7 477 4 452 4.64e-39 148
Msa1002660 MtrunA17_Chr5g0409591 27.626 438 237 13 105 491 76 484 6.44e-39 148
Msa1002660 MtrunA17_Chr7g0218841 27.366 486 290 17 9 485 6 437 8.23e-39 147
Msa1002660 MtrunA17_Chr5g0403641 27.379 515 280 19 1 487 53 501 8.27e-39 148
Msa1002660 MtrunA17_Chr7g0218831 27.629 485 289 16 9 485 6 436 1.71e-38 145
Msa1002660 MtrunA17_Chr1g0207981 27.362 508 325 17 1 494 1 478 1.82e-38 146
Msa1002660 MtrunA17_Chr7g0249981 27.789 493 298 21 7 489 23 467 2.77e-38 146
Msa1002660 MtrunA17_Chr5g0432731 31.985 272 159 6 220 490 52 298 2.78e-38 142
Msa1002660 MtrunA17_Chr8g0367221 29.274 427 241 17 4 406 7 396 3.59e-38 149
Msa1002660 MtrunA17_Chr8g0367221 26.598 485 293 16 2 466 1281 1722 6.07e-36 143
Msa1002660 MtrunA17_Chr8g0367221 29.147 422 249 14 4 406 793 1183 9.87e-35 139
Msa1002660 MtrunA17_Chr1g0207931 26.139 505 264 15 1 488 85 497 1.78e-37 144
Msa1002660 MtrunA17_Chr5g0412111 27.364 497 312 16 9 492 5 465 3.10e-37 142
Msa1002660 MtrunA17_Chr7g0241781 27.957 465 268 21 7 467 7 408 4.13e-37 142
Msa1002660 MtrunA17_Chr5g0401721 28.512 484 307 18 17 489 16 471 1.06e-36 141
Msa1002660 MtrunA17_Chr6g0454271 35.341 249 133 7 247 491 65 289 1.81e-36 136
Msa1002660 MtrunA17_Chr7g0241801 27.813 471 264 22 5 466 4 407 2.90e-36 139
Msa1002660 MtrunA17_Chr1g0153461 37.118 229 117 7 279 496 4 216 3.01e-36 134
Msa1002660 MtrunA17_Chr4g0072761 33.208 265 142 7 222 486 221 450 6.96e-36 139
Msa1002660 MtrunA17_Chr3g0118751 26.036 507 292 17 5 490 2 446 2.27e-35 137
Msa1002660 MtrunA17_Chr2g0278721 28.953 487 269 18 8 465 516 954 2.58e-35 140
Msa1002660 MtrunA17_Chr2g0278721 27.234 470 292 15 8 466 14 444 2.33e-31 129
Msa1002660 MtrunA17_Chr4g0032331 27.122 483 283 19 10 476 9 438 3.54e-35 137
Msa1002660 MtrunA17_Chr4g0072771 27.328 494 292 18 7 486 23 463 1.18e-34 135
Msa1002660 MtrunA17_Chr6g0454371 39.267 191 98 4 301 491 1 173 1.72e-34 127
Msa1002660 MtrunA17_Chr6g0466831 26.667 465 298 15 8 467 17 443 5.01e-34 134
Msa1002660 MtrunA17_Chr4g0040691 27.048 525 284 22 1 491 1 460 1.36e-33 132
Msa1002660 MtrunA17_Chr6g0454171 32.677 254 123 8 244 491 101 312 1.56e-33 129
Msa1002660 MtrunA17_Chr3g0106251 30.515 272 160 7 220 490 52 295 1.82e-33 129
Msa1002660 MtrunA17_Chr5g0426401 32.847 274 159 9 219 489 60 311 2.13e-33 129
Msa1002660 MtrunA17_Chr3g0118721 30.882 272 168 7 220 490 39 291 2.84e-33 128
Msa1002660 MtrunA17_Chr6g0464091 28.571 413 254 13 2 401 11 395 1.55e-32 129
Msa1002660 MtrunA17_Chr7g0232351 28.049 410 233 17 8 391 5 378 2.42e-32 127
Msa1002660 MtrunA17_Chr6g0466841 25.806 465 302 15 8 467 17 443 2.55e-32 129
Msa1002660 MtrunA17_Chr7g0218811 25.257 487 284 16 9 477 15 439 3.21e-32 128
Msa1002660 MtrunA17_Chr6g0454251 29.078 423 235 18 4 391 2 394 4.60e-32 127
Msa1002660 MtrunA17_Chr3g0118661 25.536 513 317 14 1 487 5 478 5.73e-32 128
Msa1002660 MtrunA17_Chr7g0218821 37.000 200 105 5 279 477 261 440 7.73e-32 127
Msa1002660 MtrunA17_Chr5g0393591 23.904 502 295 16 9 497 17 444 1.07e-31 127
Msa1002660 MtrunA17_Chr8g0336251 26.036 507 310 15 8 492 6 469 1.08e-31 127
Msa1002660 MtrunA17_Chr8g0336321 26.036 507 310 15 8 492 6 469 1.39e-31 127
Msa1002660 MtrunA17_Chr4g0042891 26.758 512 314 21 5 498 3 471 1.54e-31 127
Msa1002660 MtrunA17_Chr5g0448551 26.488 521 297 24 1 499 1 457 1.57e-31 126
Msa1002660 MtrunA17_Chr4g0069611 27.682 466 290 18 8 466 14 439 2.45e-31 126
Msa1002660 MtrunA17_Chr4g0040711 26.515 528 281 21 1 490 1 459 3.19e-31 125
Msa1002660 MtrunA17_Chr2g0278741 29.087 471 282 20 8 466 96 526 1.64e-30 125
Msa1002660 MtrunA17_Chr3g0079711 35.052 194 104 4 305 486 3 186 1.85e-30 117
Msa1002660 MtrunA17_Chr8g0355011 27.621 391 194 12 119 491 45 364 7.36e-30 120
Msa1002660 MtrunA17_Chr4g0042931 25.391 512 319 21 5 498 3 469 2.22e-29 120
Msa1002660 MtrunA17_Chr8g0336261 41.667 156 72 4 301 456 1 137 2.91e-28 109
Msa1002660 MtrunA17_Chr1g0196851 25.996 477 290 14 1 462 41 469 4.11e-28 117
Msa1002660 MtrunA17_Chr6g0482061 25.553 497 301 19 9 476 11 467 1.14e-27 115
Msa1002660 MtrunA17_Chr2g0302851 26.955 486 268 22 8 466 15 440 2.35e-27 114
Msa1002660 MtrunA17_Chr7g0249961 30.986 213 124 5 279 489 69 260 1.93e-26 108
Msa1002660 MtrunA17_Chr2g0283041 24.118 510 311 17 8 498 6 458 2.91e-26 111
Msa1002660 MtrunA17_Chr8g0337381 39.041 146 73 3 351 493 1 133 9.89e-26 102
Msa1002660 MtrunA17_Chr5g0427571 35.644 202 121 4 220 419 45 239 3.03e-24 102
Msa1002660 MtrunA17_Chr4g0029151 24.468 470 291 16 7 462 18 437 3.87e-24 105
Msa1002660 MtrunA17_Chr4g0029131 24.353 464 299 17 7 462 10 429 5.39e-24 105
Msa1002660 MtrunA17_Chr6g0454231 27.839 273 137 7 219 490 7 220 6.39e-24 104
Msa1002660 MtrunA17_Chr7g0243731 54.930 71 32 0 349 419 6 76 8.08e-24 95.1
Msa1002660 MtrunA17_Chr3g0092031 33.862 189 104 6 281 466 6 176 1.24e-23 98.6
Msa1002660 MtrunA17_Chr7g0243921 34.783 184 107 5 7 188 38 210 2.80e-23 98.6
Msa1002660 MtrunA17_Chr5g0431431 30.263 228 111 5 220 441 156 341 2.52e-22 98.6
Msa1002660 MtrunA17_Chr7g0272701 36.301 146 85 3 85 226 11 152 4.58e-22 92.8
Msa1002660 MtrunA17_Chr4g0039881 24.941 425 213 15 19 401 2 362 7.24e-22 98.2
Msa1002660 MtrunA17_Chr1g0207881 36.111 144 78 5 350 491 256 387 7.51e-21 94.7
Msa1002660 MtrunA17_Chr2g0319801 25.918 463 277 15 8 452 7 421 8.87e-21 95.1
Msa1002660 MtrunA17_Chr2g0319761 24.842 475 300 15 6 466 5 436 7.49e-20 92.0
Msa1002660 MtrunA17_Chr2g0319751 25.328 458 290 17 6 452 482 898 1.42e-19 92.4
Msa1002660 MtrunA17_Chr2g0319751 24.176 455 271 18 8 452 7 397 1.29e-16 83.2
Msa1002660 MtrunA17_Chr2g0319791 24.672 458 293 15 6 452 5 421 3.54e-19 90.1
Msa1002660 MtrunA17_Chr2g0319731 24.835 455 292 14 8 452 24 438 1.03e-17 85.9
Msa1002660 MtrunA17_Chr7g0231651 32.642 193 111 6 8 192 13 194 4.68e-16 77.0
Msa1002660 MtrunA17_Chr7g0243721 41.667 120 58 5 210 324 23 135 5.42e-16 75.1
Msa1002660 MtrunA17_Chr2g0321331 33.333 171 87 4 282 452 87 230 3.03e-15 75.9
Msa1002660 MtrunA17_Chr5g0442501 23.100 329 217 7 7 326 3 304 1.75e-13 71.2
Msa1002660 MtrunA17_Chr6g0454391 38.095 84 38 1 368 451 13 82 1.81e-13 67.4
Msa1002660 MtrunA17_Chr7g0265071 54.098 61 27 1 432 491 1 61 1.35e-12 63.2
Msa1002660 MtrunA17_Chr4g0066231 35.897 78 49 1 390 467 1 77 1.81e-12 62.8
Msa1002660 MtrunA17_Chr6g0453981 28.249 177 112 5 177 352 67 229 6.21e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1002660 AT2G36750.1 53.814 485 218 3 6 490 7 485 0.0 545
Msa1002660 AT2G36800.1 54.637 496 212 6 1 490 1 489 0.0 538
Msa1002660 AT2G36760.1 52.469 486 226 2 6 491 11 491 0.0 534
Msa1002660 AT2G36780.1 52.977 487 220 4 6 490 11 490 0.0 531
Msa1002660 AT2G36770.1 52.653 490 223 4 6 493 11 493 0.0 525
Msa1002660 AT2G36790.1 54.227 485 213 4 8 490 12 489 0.0 520
Msa1002660 AT3G53160.1 51.313 495 233 5 1 494 1 488 0.0 518
Msa1002660 AT3G53150.1 49.206 504 238 7 1 491 14 512 2.01e-168 486
Msa1002660 AT2G15480.2 39.279 499 270 10 7 488 8 490 5.89e-119 359
Msa1002660 AT2G15490.3 40.568 493 262 11 7 488 5 477 9.55e-119 358
Msa1002660 AT2G15480.1 39.592 490 271 10 7 488 8 480 2.80e-118 357
Msa1002660 AT4G34131.1 40.845 497 266 13 2 488 1 479 9.33e-118 355
Msa1002660 AT2G15490.1 40.726 496 260 13 7 488 5 480 3.25e-117 354
Msa1002660 AT4G34138.1 42.062 485 241 15 7 477 9 467 7.85e-112 340
Msa1002660 AT4G34135.1 39.024 492 271 12 7 488 9 481 4.28e-101 312
Msa1002660 AT5G14860.1 32.939 507 278 17 9 490 8 477 4.69e-75 245
Msa1002660 AT2G16890.2 32.934 501 284 20 9 494 9 472 1.36e-74 243
Msa1002660 AT1G73880.1 30.957 491 298 12 7 490 12 468 8.49e-73 239
Msa1002660 AT2G16890.3 33.333 420 242 15 9 416 9 402 2.28e-67 223
Msa1002660 AT1G10400.1 31.377 494 289 18 7 487 5 461 4.51e-66 221
Msa1002660 AT5G03490.1 31.440 493 274 16 9 487 19 461 2.19e-59 203
Msa1002660 AT5G12890.1 28.876 516 310 17 1 491 1 484 1.45e-58 201
Msa1002660 AT4G34135.2 36.637 333 194 7 7 331 9 332 1.58e-57 194
Msa1002660 AT2G29740.1 30.539 501 301 15 4 488 5 474 2.30e-54 190
Msa1002660 AT1G51210.1 31.010 416 245 14 7 416 18 397 9.54e-54 187
Msa1002660 AT1G22400.1 30.724 511 305 20 3 494 9 489 5.17e-52 184
Msa1002660 AT1G07250.1 32.447 376 226 10 120 490 122 474 6.72e-51 181
Msa1002660 AT1G78270.1 29.492 512 299 16 3 489 7 481 1.59e-50 180
Msa1002660 AT4G15550.1 28.628 503 300 17 6 489 12 474 2.24e-50 179
Msa1002660 AT1G22360.1 29.020 510 296 19 7 489 8 478 2.94e-50 179
Msa1002660 AT3G21760.1 28.320 512 308 15 7 490 2 482 3.25e-50 179
Msa1002660 AT1G06000.1 28.974 497 267 17 7 488 8 433 5.61e-50 177
Msa1002660 AT3G11340.1 27.723 505 291 13 1 490 1 446 2.87e-49 176
Msa1002660 AT2G29730.1 31.452 372 222 12 123 489 120 463 4.27e-49 176
Msa1002660 AT2G30150.2 29.860 499 276 18 9 490 13 454 1.77e-48 174
Msa1002660 AT3G21800.1 28.764 518 288 21 8 490 6 477 3.76e-48 173
Msa1002660 AT2G43820.1 32.275 378 219 12 119 491 104 449 6.70e-48 172
Msa1002660 AT1G22380.1 30.309 518 289 20 2 489 6 481 1.40e-47 172
Msa1002660 AT2G29750.1 28.911 505 305 16 4 489 5 474 1.50e-47 172
Msa1002660 AT2G30150.1 29.757 494 273 18 14 490 2 438 2.29e-47 170
Msa1002660 AT4G01070.1 28.571 497 291 14 9 483 8 462 3.23e-47 171
Msa1002660 AT1G01420.1 30.266 489 280 17 9 477 8 455 3.40e-47 171
Msa1002660 AT1G01420.2 30.266 489 280 17 9 477 11 458 3.70e-47 171
Msa1002660 AT2G29710.1 26.096 502 305 16 10 489 6 463 5.06e-47 170
Msa1002660 AT2G31750.1 30.020 503 281 18 7 490 6 456 6.34e-47 169
Msa1002660 AT5G05860.1 28.131 487 299 14 8 489 8 448 9.38e-47 169
Msa1002660 AT2G31750.2 30.020 503 281 18 7 490 6 456 1.07e-46 169
Msa1002660 AT3G16520.3 33.692 279 148 7 217 487 209 458 1.78e-46 168
Msa1002660 AT1G05560.1 29.681 502 284 22 9 492 5 455 2.14e-46 168
Msa1002660 AT4G15280.1 29.941 511 294 20 7 490 2 475 2.27e-46 168
Msa1002660 AT4G15280.2 29.961 514 296 20 4 490 31 507 3.04e-46 169
Msa1002660 AT1G05560.2 29.681 502 284 22 9 492 55 505 3.87e-46 169
Msa1002660 AT1G22360.2 28.320 512 285 20 7 489 8 466 3.87e-46 167
Msa1002660 AT1G01390.1 30.093 432 245 13 9 416 8 406 9.63e-45 164
Msa1002660 AT3G02100.1 28.231 503 276 18 9 485 13 456 1.39e-44 163
Msa1002660 AT1G01390.2 30.093 432 245 13 9 416 25 423 1.43e-44 164
Msa1002660 AT1G07260.1 32.000 375 221 13 123 489 124 472 1.58e-44 163
Msa1002660 AT4G14090.1 29.243 489 289 19 9 487 13 454 1.84e-44 163
Msa1002660 AT1G05530.1 25.703 498 306 15 9 489 5 455 2.06e-44 162
Msa1002660 AT4G15260.1 37.102 283 147 8 219 490 94 356 2.07e-44 160
Msa1002660 AT5G05870.1 27.699 491 296 16 11 488 10 454 3.40e-44 162
Msa1002660 AT1G24100.1 29.000 500 301 17 1 488 1 458 4.33e-44 162
Msa1002660 AT2G31790.1 26.587 504 299 18 2 485 1 453 4.35e-44 162
Msa1002660 AT1G22340.1 27.038 503 326 15 1 488 5 481 6.18e-44 162
Msa1002660 AT1G07240.1 31.421 366 215 13 135 489 136 476 1.66e-43 160
Msa1002660 AT5G05880.1 27.733 494 292 18 8 488 7 448 5.42e-43 159
Msa1002660 AT2G30140.1 27.181 493 292 16 9 488 13 451 6.65e-43 159
Msa1002660 AT2G18570.1 26.531 490 308 13 9 481 5 459 7.03e-43 159
Msa1002660 AT2G30140.2 27.033 492 293 15 9 488 13 450 9.79e-43 158
Msa1002660 AT3G16520.2 33.333 264 142 7 217 472 209 446 1.27e-42 157
Msa1002660 AT3G16520.1 38.462 208 105 5 217 416 209 401 1.94e-42 157
Msa1002660 AT1G22370.2 28.317 505 311 20 2 489 6 476 1.09e-41 155
Msa1002660 AT2G23260.1 27.551 490 311 13 3 488 4 453 4.86e-41 153
Msa1002660 AT3G21780.1 27.853 517 292 17 7 490 2 470 5.45e-41 154
Msa1002660 AT5G59590.1 26.061 495 306 16 4 488 5 449 6.12e-41 153
Msa1002660 AT2G43840.2 25.767 489 311 13 9 491 7 449 2.35e-40 151
Msa1002660 AT3G21790.1 35.616 292 152 11 219 497 216 484 2.62e-40 152
Msa1002660 AT5G59580.1 27.033 492 298 17 7 488 7 447 2.65e-40 151
Msa1002660 AT2G43840.1 25.767 489 311 13 9 491 7 449 3.88e-40 150
Msa1002660 AT3G50740.1 26.214 515 289 19 7 482 5 467 4.09e-40 151
Msa1002660 AT5G26310.1 26.367 512 284 20 7 481 5 460 4.41e-40 151
Msa1002660 AT5G66690.1 27.273 517 273 20 7 481 5 460 1.55e-39 150
Msa1002660 AT2G36970.1 25.595 504 318 15 7 491 8 473 1.66e-39 150
Msa1002660 AT4G15480.1 27.400 500 320 19 8 494 18 487 3.50e-39 149
Msa1002660 AT3G46670.1 27.254 488 291 19 11 486 11 446 7.33e-39 147
Msa1002660 AT2G18560.1 33.813 278 148 7 217 481 115 369 3.33e-38 144
Msa1002660 AT4G15490.1 26.389 504 308 19 9 491 8 469 3.34e-38 146
Msa1002660 AT5G49690.1 28.448 464 273 15 8 458 9 426 3.49e-38 145
Msa1002660 AT2G23250.1 28.690 481 281 18 18 488 7 435 4.17e-38 145
Msa1002660 AT1G05675.1 26.978 493 295 18 9 485 6 449 6.72e-38 145
Msa1002660 AT5G05900.1 26.477 491 301 15 8 488 7 447 2.50e-37 143
Msa1002660 AT3G55700.1 27.092 502 285 20 11 490 10 452 2.93e-37 143
Msa1002660 AT4G36770.1 26.562 512 284 18 7 482 2 457 3.88e-37 142
Msa1002660 AT5G65550.1 28.090 445 252 16 1 421 1 401 5.53e-37 142
Msa1002660 AT5G05890.1 27.129 505 299 17 8 499 7 455 7.68e-37 142
Msa1002660 AT1G05680.1 26.327 490 302 15 9 485 6 449 1.91e-36 140
Msa1002660 AT3G46660.1 27.495 491 292 19 11 488 16 455 2.21e-36 140
Msa1002660 AT5G17050.1 26.380 489 303 17 3 481 8 449 7.58e-36 139
Msa1002660 AT3G21750.1 24.903 514 309 16 7 489 2 469 1.49e-35 138
Msa1002660 AT5G17030.1 30.769 273 158 6 217 489 215 456 3.24e-35 137
Msa1002660 AT3G21560.1 26.547 501 317 21 6 491 11 475 1.35e-34 136
Msa1002660 AT2G16890.4 29.688 320 195 12 9 317 9 309 1.82e-34 132
Msa1002660 AT2G16890.1 29.688 320 195 12 9 317 9 309 1.82e-34 132
Msa1002660 AT5G17040.2 32.342 269 151 7 222 490 102 339 1.92e-34 132
Msa1002660 AT3G46650.1 25.205 488 292 16 5 484 6 428 5.19e-34 133
Msa1002660 AT5G17040.1 32.342 269 151 7 222 490 204 441 5.27e-34 134
Msa1002660 AT5G38010.1 25.882 510 292 17 4 488 5 453 5.97e-33 130
Msa1002660 AT2G28080.1 27.416 507 284 21 14 491 23 474 6.87e-33 131
Msa1002660 AT3G46680.1 25.301 498 295 18 1 479 1 440 1.54e-32 129
Msa1002660 AT1G30530.1 25.859 495 295 18 10 490 16 452 2.20e-32 129
Msa1002660 AT3G46690.1 24.797 492 293 17 7 479 7 440 3.54e-32 129
Msa1002660 AT3G55710.1 26.923 416 266 15 11 416 10 397 1.25e-31 127
Msa1002660 AT1G22370.1 31.868 273 164 8 219 489 54 306 1.77e-31 124
Msa1002660 AT3G46700.1 24.335 489 290 16 7 477 7 433 2.83e-31 126
Msa1002660 AT3G46720.1 25.866 491 280 19 7 479 7 431 3.00e-31 126
Msa1002660 AT4G15500.1 25.444 507 314 20 1 489 3 463 5.64e-31 125
Msa1002660 AT3G22250.1 26.945 527 276 27 2 488 3 460 8.95e-31 125
Msa1002660 AT2G26480.1 24.899 494 303 13 11 491 10 448 9.36e-31 124
Msa1002660 AT1G64910.1 24.444 450 285 13 8 452 5 404 6.93e-28 116
Msa1002660 AT5G38040.1 32.719 217 115 6 279 488 257 449 8.57e-28 116
Msa1002660 AT2G15490.2 33.505 194 109 6 7 188 5 190 2.27e-26 108
Msa1002660 AT4G27570.1 24.775 444 290 13 7 442 5 412 2.81e-25 108
Msa1002660 AT3G29630.1 24.832 447 292 13 7 452 4 407 1.08e-24 107
Msa1002660 AT4G27560.1 25.000 444 289 14 7 442 5 412 4.33e-24 105
Msa1002660 AT5G53990.1 23.111 450 291 12 8 452 5 404 1.15e-22 100
Msa1002660 AT2G22590.1 33.505 194 117 4 271 463 263 445 2.08e-22 100
Msa1002660 AT5G54010.1 23.965 459 304 14 7 461 4 421 9.12e-22 98.6
Msa1002660 AT1G50580.1 24.009 454 299 13 7 459 4 412 3.33e-21 96.7
Msa1002660 AT3G29630.2 33.333 183 110 3 270 452 211 381 1.40e-20 94.4
Msa1002660 AT1G64920.1 23.799 458 298 14 7 459 4 415 2.41e-20 94.0
Msa1002660 AT4G09500.2 23.400 453 292 13 5 452 2 404 5.56e-20 92.8
Msa1002660 AT5G37950.2 27.273 297 175 10 103 391 74 337 1.09e-19 90.9
Msa1002660 AT5G54060.1 24.038 416 267 13 8 407 12 394 5.29e-19 90.1
Msa1002660 AT4G09500.1 23.385 449 272 14 5 452 2 379 1.38e-18 88.6
Msa1002660 AT5G37950.1 31.844 179 98 5 219 391 183 343 2.07e-18 87.0
Msa1002660 AT2G22930.1 22.737 453 295 12 5 452 2 404 2.01e-17 85.1
Msa1002660 AT4G01070.2 27.052 329 197 11 9 325 8 305 5.05e-16 80.1

Find 90 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAATGTTGGTGTGAAAAT+TGG 0.221494 6_4:+88479287 Msa1002660:CDS
TGGTAGAGGCCTAGTGATTA+AGG 0.260649 6_4:+88479100 Msa1002660:CDS
ACTCCAAGAAAAGAAATTCT+TGG 0.289078 6_4:-88478483 None:intergenic
AATTAGGGAGCTTGGTAAAA+TGG 0.291320 6_4:+88479436 Msa1002660:CDS
AACAACACAAAGTGTAGTTT+TGG 0.293786 6_4:-88478075 None:intergenic
AACAGGACTAGGAGAATTAA+AGG 0.318916 6_4:+88478635 Msa1002660:CDS
TTCTTTATTAGCCATGATTT+CGG 0.324496 6_4:-88478556 None:intergenic
TCTCTTAAAACCCAAATAAA+AGG 0.326741 6_4:-88479014 None:intergenic
GCTTGGTAAAATGGCTAAAA+AGG 0.328408 6_4:+88479445 Msa1002660:CDS
TAAATGTTGGTGTGAAAATT+GGG 0.334829 6_4:+88479288 Msa1002660:CDS
CTAGCTACATGAAATGTATA+TGG 0.338578 6_4:-88478447 None:intergenic
AATGATAAAGTTTGGTGTAT+TGG 0.348119 6_4:+88478780 Msa1002660:CDS
AGGTAATAATAATATTAATA+AGG 0.349413 6_4:+88478848 Msa1002660:CDS
TCTTCCTCACCCCATTTCAT+AGG 0.349665 6_4:-88479320 None:intergenic
AAGAGGAATAGAAATGTTAA+TGG 0.353560 6_4:+88479379 Msa1002660:CDS
ACTTAGTAACACGGATTACT+TGG 0.359179 6_4:+88478812 Msa1002660:CDS
ATATGCAAGGGATTATAAAA+AGG 0.364687 6_4:+88478752 Msa1002660:CDS
AGAGCTTGGTTTAGCATTAG+AGG 0.368487 6_4:+88478980 Msa1002660:CDS
TCAAGATTCCCACACCCTTC+TGG 0.369860 6_4:-88478297 None:intergenic
CTTTGTGTTGTTTCCAATGA+TGG 0.396641 6_4:+88478086 Msa1002660:CDS
GAATTTCCATGTAAAGAGTC+TGG 0.397254 6_4:+88478270 Msa1002660:CDS
GAAGCTGAAACGGGTAGTTA+TGG 0.406971 6_4:+88478693 Msa1002660:CDS
GGGTGAAGAGTCCTATGAAA+TGG 0.408750 6_4:+88479309 Msa1002660:CDS
AGTGTTATCTATGCATGCTT+TGG 0.411358 6_4:+88478924 Msa1002660:CDS
GTTGTACAAATATTAAATGT+TGG 0.418685 6_4:+88479275 Msa1002660:CDS
AGGTAAGAAATGATAAAGTT+TGG 0.421595 6_4:+88478772 Msa1002660:CDS
ATATTGTCACATCAAGCAAT+TGG 0.426271 6_4:+88479143 Msa1002660:CDS
AAGCTGAAACGGGTAGTTAT+GGG 0.431787 6_4:+88478694 Msa1002660:CDS
TTATAATCCCTTGCATATGT+TGG 0.442755 6_4:-88478747 None:intergenic
CAATAATATGGCCGAAATCA+TGG 0.446915 6_4:+88478545 Msa1002660:CDS
GAGAATTAAAGGGCGAAGCT+TGG 0.449179 6_4:+88478646 Msa1002660:CDS
TAAGGATTCAAATGATGAAT+GGG 0.449668 6_4:+88478866 Msa1002660:CDS
CAATGCATTGAGGAAGTTTG+AGG 0.452176 6_4:-88478343 None:intergenic
AGGCCTAGTGATTAAGGGTT+GGG 0.460003 6_4:+88479106 Msa1002660:CDS
ATAAGGATTCAAATGATGAA+TGG 0.460628 6_4:+88478865 Msa1002660:CDS
TCAGAGATGATACAAGTTGC+TGG 0.461033 6_4:-88478414 None:intergenic
CTTTACATGGAAATTCAAGT+TGG 0.470893 6_4:-88478263 None:intergenic
TAACACGGATTACTTGGATA+AGG 0.475459 6_4:+88478818 Msa1002660:CDS
TCTGAATACTTTGAATTGCC+TGG 0.477717 6_4:+88478579 Msa1002660:CDS
GGATTTGAGGGAAGAATCAA+TGG 0.478326 6_4:+88479080 Msa1002660:CDS
GGTGAAGAGTCCTATGAAAT+GGG 0.478362 6_4:+88479310 Msa1002660:CDS
CCACCACAGTTGATAGAGCT+TGG 0.479609 6_4:+88478966 Msa1002660:CDS
GAAATGACAATAGCACAAAC+AGG 0.482540 6_4:+88478618 Msa1002660:CDS
GACTTGCTTGAAGCTGAAAC+GGG 0.486016 6_4:+88478684 Msa1002660:CDS
CTTGAGGTGAGTGGATTTGA+GGG 0.487333 6_4:+88479068 Msa1002660:CDS
ATGAATGGGATCACTTGAAA+TGG 0.487806 6_4:+88478880 Msa1002660:CDS
TGACTTGCTTGAAGCTGAAA+CGG 0.493725 6_4:+88478683 Msa1002660:CDS
AAGAAAGAAGATGTTGAAAG+AGG 0.498045 6_4:+88479362 Msa1002660:CDS
GCTTCTTAACACACTGCGGT+TGG 0.503265 6_4:+88479168 Msa1002660:CDS
CTGGTGTGCCAATGGTTACA+TGG 0.505452 6_4:+88479216 Msa1002660:CDS
GCTTGAGGTGAGTGGATTTG+AGG 0.505611 6_4:+88479067 Msa1002660:CDS
ATGTGGCCTTGTGCCATCAT+TGG 0.505701 6_4:-88478099 None:intergenic
GGTAGAGGCCTAGTGATTAA+GGG 0.506430 6_4:+88479101 Msa1002660:CDS
TCCGTGTTACTAAGTGATAC+AGG 0.506827 6_4:-88478804 None:intergenic
CTTGACATGCTACCTGCACT+TGG 0.511668 6_4:+88478315 Msa1002660:CDS
GGTAATCCAGACTCTTTACA+TGG 0.514181 6_4:-88478276 None:intergenic
AATTATGCATATTGAAGAGA+TGG 0.518442 6_4:-88478515 None:intergenic
TTTGAGGCCATGCCAAGTGC+AGG 0.543958 6_4:-88478327 None:intergenic
CATGCTACCTGCACTTGGCA+TGG 0.544149 6_4:+88478320 Msa1002660:CDS
ACTCTAGAAGCAATATGTGC+TGG 0.546599 6_4:+88479197 Msa1002660:CDS
TTGTCACATCAAGCAATTGG+AGG 0.555966 6_4:+88479146 Msa1002660:CDS
TCTGGATTACCAGAAGGGTG+TGG 0.559392 6_4:+88478288 Msa1002660:CDS
AAAAGTGGCCATGTAACCAT+TGG 0.565009 6_4:-88479224 None:intergenic
GAGGGAAGAATCAATGGTAG+AGG 0.568339 6_4:+88479086 Msa1002660:CDS
GAGGCCTAGTGATTAAGGGT+TGG 0.570136 6_4:+88479105 Msa1002660:CDS
GAGCCCAACCCTTAATCACT+AGG 0.571445 6_4:-88479109 None:intergenic
ACAATAGCACAAACAGGACT+AGG 0.572414 6_4:+88478624 Msa1002660:CDS
ACAGGACTAGGAGAATTAAA+GGG 0.574718 6_4:+88478636 Msa1002660:CDS
TGGCTTGATTCTCAGAAACA+AGG 0.577535 6_4:+88478900 Msa1002660:CDS
CTGGATTACCAGAAGGGTGT+GGG 0.577643 6_4:+88478289 Msa1002660:CDS
GGAGAAACTTCAATGCATTG+AGG 0.579276 6_4:-88478353 None:intergenic
AGGCCACATGATCCCCATGA+TGG 0.587737 6_4:+88478113 Msa1002660:CDS
GGAAGAAGAAAGTGACGTGT+TGG 0.587928 6_4:+88479337 Msa1002660:CDS
GAGTCCTATGAAATGGGGTG+AGG 0.588467 6_4:+88479316 Msa1002660:CDS
AAAGAGTCTGGATTACCAGA+AGG 0.592502 6_4:+88478282 Msa1002660:CDS
AGTTAGAGCCAACATATGCA+AGG 0.605309 6_4:+88478739 Msa1002660:CDS
TGTCCATCATGGGGATCATG+TGG 0.608604 6_4:-88478116 None:intergenic
TCCTGTATCACTTAGTAACA+CGG 0.612903 6_4:+88478803 Msa1002660:CDS
AAGAGTCTGGATTACCAGAA+GGG 0.616408 6_4:+88478283 Msa1002660:CDS
AAATGTTGGTGTGAAAATTG+GGG 0.617684 6_4:+88479289 Msa1002660:CDS
GGCTTGATTCTCAGAAACAA+GGG 0.618577 6_4:+88478901 Msa1002660:CDS
GTTAGAGCCAACATATGCAA+GGG 0.628142 6_4:+88478740 Msa1002660:CDS
TACTTGGATAAGGTTCAAAG+AGG 0.628427 6_4:+88478828 Msa1002660:CDS
CCAAGCTCTATCAACTGTGG+TGG 0.630706 6_4:-88478966 None:intergenic
AATATGTGCTGGTGTGCCAA+TGG 0.637264 6_4:+88479208 Msa1002660:CDS
TTGTTTCCAATGATGGCACA+AGG 0.685173 6_4:+88478093 Msa1002660:CDS
GGAGGCTTCTTAACACACTG+CGG 0.693423 6_4:+88479164 Msa1002660:CDS
TGTGACAATATCAATAACTG+AGG 0.695207 6_4:-88479131 None:intergenic
GTGAAGAGTCCTATGAAATG+GGG 0.698046 6_4:+88479311 Msa1002660:CDS
AAACCAAGCTCTATCAACTG+TGG 0.705010 6_4:-88478969 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGGTAATAATAATATTAATA+AGG + chr6_4:88478848-88478867 Msa1002660:CDS 10.0%
!! AGGTAATAATAATATTAATA+AGG + chr6_4:88478848-88478867 Msa1002660:CDS 10.0%
!!! TAATTTTCATGTCAATAATA+TGG + chr6_4:88478533-88478552 Msa1002660:CDS 15.0%
!!! TAATTTTCATGTCAATAATA+TGG + chr6_4:88478533-88478552 Msa1002660:CDS 15.0%
!!! AACAAAAAGACCTTTTATTT+GGG + chr6_4:88479004-88479023 Msa1002660:CDS 20.0%
!! CTAAACTTTCATTCAAAAAT+TGG - chr6_4:88479256-88479275 None:intergenic 20.0%
!! GTTGTACAAATATTAAATGT+TGG + chr6_4:88479275-88479294 Msa1002660:CDS 20.0%
!! AAGAAAGAAGAAAAAGAATT+AGG + chr6_4:88479420-88479439 Msa1002660:CDS 20.0%
!! AGAAAGAAGAAAAAGAATTA+GGG + chr6_4:88479421-88479440 Msa1002660:CDS 20.0%
!!! TTTTGAATTGGTATTTTCAT+TGG - chr6_4:88479561-88479580 None:intergenic 20.0%
!!! AACAAAAAGACCTTTTATTT+GGG + chr6_4:88479004-88479023 Msa1002660:CDS 20.0%
!! CTAAACTTTCATTCAAAAAT+TGG - chr6_4:88479256-88479275 None:intergenic 20.0%
!! GTTGTACAAATATTAAATGT+TGG + chr6_4:88479275-88479294 Msa1002660:CDS 20.0%
!! AAGAAAGAAGAAAAAGAATT+AGG + chr6_4:88479420-88479439 Msa1002660:CDS 20.0%
!! AGAAAGAAGAAAAAGAATTA+GGG + chr6_4:88479421-88479440 Msa1002660:CDS 20.0%
!!! TTTTGAATTGGTATTTTCAT+TGG - chr6_4:88479561-88479580 None:intergenic 20.0%
!! ATTCCAAGAATTTCTTTTCT+TGG + chr6_4:88478480-88478499 Msa1002660:CDS 25.0%
! AATTATGCATATTGAAGAGA+TGG - chr6_4:88478518-88478537 None:intergenic 25.0%
! TTCTTTATTAGCCATGATTT+CGG - chr6_4:88478559-88478578 None:intergenic 25.0%
!!! TTGTCATTTCAATTTTGTCA+GGG - chr6_4:88478608-88478627 None:intergenic 25.0%
!!! ATTGTCATTTCAATTTTGTC+AGG - chr6_4:88478609-88478628 None:intergenic 25.0%
! ATATGCAAGGGATTATAAAA+AGG + chr6_4:88478752-88478771 Msa1002660:CDS 25.0%
! AGGTAAGAAATGATAAAGTT+TGG + chr6_4:88478772-88478791 Msa1002660:CDS 25.0%
!!! AATGATAAAGTTTGGTGTAT+TGG + chr6_4:88478780-88478799 Msa1002660:CDS 25.0%
! ATAAGGATTCAAATGATGAA+TGG + chr6_4:88478865-88478884 Msa1002660:CDS 25.0%
! TAAGGATTCAAATGATGAAT+GGG + chr6_4:88478866-88478885 Msa1002660:CDS 25.0%
!! CAACAAAAAGACCTTTTATT+TGG + chr6_4:88479003-88479022 Msa1002660:CDS 25.0%
! TCTCTTAAAACCCAAATAAA+AGG - chr6_4:88479017-88479036 None:intergenic 25.0%
!!! TTTTATTTGGGTTTTAAGAG+AGG + chr6_4:88479016-88479035 Msa1002660:CDS 25.0%
!!! TTTATTTGGGTTTTAAGAGA+GGG + chr6_4:88479017-88479036 Msa1002660:CDS 25.0%
! AGTTAGAAGAGTTGAAAAAA+TGG + chr6_4:88479045-88479064 Msa1002660:CDS 25.0%
! TTAAATGTTGGTGTGAAAAT+TGG + chr6_4:88479287-88479306 Msa1002660:CDS 25.0%
! TAAATGTTGGTGTGAAAATT+GGG + chr6_4:88479288-88479307 Msa1002660:CDS 25.0%
! AAGAGGAATAGAAATGTTAA+TGG + chr6_4:88479379-88479398 Msa1002660:CDS 25.0%
!!! TACTTTTTTGCATGATATCT+TGG - chr6_4:88479517-88479536 None:intergenic 25.0%
! AGATATCATGCAAAAAAGTA+AGG + chr6_4:88479517-88479536 Msa1002660:CDS 25.0%
!! ATTCCAAGAATTTCTTTTCT+TGG + chr6_4:88478480-88478499 Msa1002660:CDS 25.0%
! AATTATGCATATTGAAGAGA+TGG - chr6_4:88478518-88478537 None:intergenic 25.0%
! TTCTTTATTAGCCATGATTT+CGG - chr6_4:88478559-88478578 None:intergenic 25.0%
!!! TTGTCATTTCAATTTTGTCA+GGG - chr6_4:88478608-88478627 None:intergenic 25.0%
!!! ATTGTCATTTCAATTTTGTC+AGG - chr6_4:88478609-88478628 None:intergenic 25.0%
! ATATGCAAGGGATTATAAAA+AGG + chr6_4:88478752-88478771 Msa1002660:CDS 25.0%
! AGGTAAGAAATGATAAAGTT+TGG + chr6_4:88478772-88478791 Msa1002660:CDS 25.0%
!!! AATGATAAAGTTTGGTGTAT+TGG + chr6_4:88478780-88478799 Msa1002660:CDS 25.0%
! ATAAGGATTCAAATGATGAA+TGG + chr6_4:88478865-88478884 Msa1002660:CDS 25.0%
! TAAGGATTCAAATGATGAAT+GGG + chr6_4:88478866-88478885 Msa1002660:CDS 25.0%
!! CAACAAAAAGACCTTTTATT+TGG + chr6_4:88479003-88479022 Msa1002660:CDS 25.0%
! TCTCTTAAAACCCAAATAAA+AGG - chr6_4:88479017-88479036 None:intergenic 25.0%
!!! TTTTATTTGGGTTTTAAGAG+AGG + chr6_4:88479016-88479035 Msa1002660:CDS 25.0%
!!! TTTATTTGGGTTTTAAGAGA+GGG + chr6_4:88479017-88479036 Msa1002660:CDS 25.0%
! AGTTAGAAGAGTTGAAAAAA+TGG + chr6_4:88479045-88479064 Msa1002660:CDS 25.0%
! TTAAATGTTGGTGTGAAAAT+TGG + chr6_4:88479287-88479306 Msa1002660:CDS 25.0%
! TAAATGTTGGTGTGAAAATT+GGG + chr6_4:88479288-88479307 Msa1002660:CDS 25.0%
! AAGAGGAATAGAAATGTTAA+TGG + chr6_4:88479379-88479398 Msa1002660:CDS 25.0%
!!! TACTTTTTTGCATGATATCT+TGG - chr6_4:88479517-88479536 None:intergenic 25.0%
! AGATATCATGCAAAAAAGTA+AGG + chr6_4:88479517-88479536 Msa1002660:CDS 25.0%
! ACAACACAAAGTGTAGTTTT+GGG - chr6_4:88478077-88478096 None:intergenic 30.0%
! AACAACACAAAGTGTAGTTT+TGG - chr6_4:88478078-88478097 None:intergenic 30.0%
! ATTTTTGCAATGTCCATCAT+GGG - chr6_4:88478129-88478148 None:intergenic 30.0%
!! TATTTTTGCAATGTCCATCA+TGG - chr6_4:88478130-88478149 None:intergenic 30.0%
GATGGACATTGCAAAAATAT+TGG + chr6_4:88478131-88478150 Msa1002660:CDS 30.0%
!!! TGAAACGAGATGCATTTTTT+GGG - chr6_4:88478194-88478213 None:intergenic 30.0%
CTTTACATGGAAATTCAAGT+TGG - chr6_4:88478266-88478285 None:intergenic 30.0%
CTAGCTACATGAAATGTATA+TGG - chr6_4:88478450-88478469 None:intergenic 30.0%
ACTCCAAGAAAAGAAATTCT+TGG - chr6_4:88478486-88478505 None:intergenic 30.0%
TTATAATCCCTTGCATATGT+TGG - chr6_4:88478750-88478769 None:intergenic 30.0%
TGTGACAATATCAATAACTG+AGG - chr6_4:88479134-88479153 None:intergenic 30.0%
ATATTGTCACATCAAGCAAT+TGG + chr6_4:88479143-88479162 Msa1002660:CDS 30.0%
AAATGTTGGTGTGAAAATTG+GGG + chr6_4:88479289-88479308 Msa1002660:CDS 30.0%
AAGAAAGAAGATGTTGAAAG+AGG + chr6_4:88479362-88479381 Msa1002660:CDS 30.0%
CATGCAAAAAAGTAAGGATA+TGG + chr6_4:88479523-88479542 Msa1002660:CDS 30.0%
! ACAACACAAAGTGTAGTTTT+GGG - chr6_4:88478077-88478096 None:intergenic 30.0%
! AACAACACAAAGTGTAGTTT+TGG - chr6_4:88478078-88478097 None:intergenic 30.0%
! ATTTTTGCAATGTCCATCAT+GGG - chr6_4:88478129-88478148 None:intergenic 30.0%
!! TATTTTTGCAATGTCCATCA+TGG - chr6_4:88478130-88478149 None:intergenic 30.0%
GATGGACATTGCAAAAATAT+TGG + chr6_4:88478131-88478150 Msa1002660:CDS 30.0%
!!! TGAAACGAGATGCATTTTTT+GGG - chr6_4:88478194-88478213 None:intergenic 30.0%
CTTTACATGGAAATTCAAGT+TGG - chr6_4:88478266-88478285 None:intergenic 30.0%
CTAGCTACATGAAATGTATA+TGG - chr6_4:88478450-88478469 None:intergenic 30.0%
ACTCCAAGAAAAGAAATTCT+TGG - chr6_4:88478486-88478505 None:intergenic 30.0%
TTATAATCCCTTGCATATGT+TGG - chr6_4:88478750-88478769 None:intergenic 30.0%
TGTGACAATATCAATAACTG+AGG - chr6_4:88479134-88479153 None:intergenic 30.0%
ATATTGTCACATCAAGCAAT+TGG + chr6_4:88479143-88479162 Msa1002660:CDS 30.0%
AAATGTTGGTGTGAAAATTG+GGG + chr6_4:88479289-88479308 Msa1002660:CDS 30.0%
AAGAAAGAAGATGTTGAAAG+AGG + chr6_4:88479362-88479381 Msa1002660:CDS 30.0%
CATGCAAAAAAGTAAGGATA+TGG + chr6_4:88479523-88479542 Msa1002660:CDS 30.0%
!!! AAAGTGTAGTTTTGGGTCTT+GGG - chr6_4:88478070-88478089 None:intergenic 35.0%
!! CTTTGTGTTGTTTCCAATGA+TGG + chr6_4:88478086-88478105 Msa1002660:CDS 35.0%
! TTTTTGCAATGTCCATCATG+GGG - chr6_4:88478128-88478147 None:intergenic 35.0%
!!! GAAACGAGATGCATTTTTTG+GGG - chr6_4:88478193-88478212 None:intergenic 35.0%
!!! GTGAAACGAGATGCATTTTT+TGG - chr6_4:88478195-88478214 None:intergenic 35.0%
GAATTTCCATGTAAAGAGTC+TGG + chr6_4:88478270-88478289 Msa1002660:CDS 35.0%
! ACAGCTTTTCAACTTCTTGT+TGG - chr6_4:88478377-88478396 None:intergenic 35.0%
CAATAATATGGCCGAAATCA+TGG + chr6_4:88478545-88478564 Msa1002660:CDS 35.0%
TCTGAATACTTTGAATTGCC+TGG + chr6_4:88478579-88478598 Msa1002660:CDS 35.0%
GAAATGACAATAGCACAAAC+AGG + chr6_4:88478618-88478637 Msa1002660:CDS 35.0%
AACAGGACTAGGAGAATTAA+AGG + chr6_4:88478635-88478654 Msa1002660:CDS 35.0%
ACAGGACTAGGAGAATTAAA+GGG + chr6_4:88478636-88478655 Msa1002660:CDS 35.0%
TCCTGTATCACTTAGTAACA+CGG + chr6_4:88478803-88478822 Msa1002660:CDS 35.0%
! ACTTAGTAACACGGATTACT+TGG + chr6_4:88478812-88478831 Msa1002660:CDS 35.0%
! TAACACGGATTACTTGGATA+AGG + chr6_4:88478818-88478837 Msa1002660:CDS 35.0%
TACTTGGATAAGGTTCAAAG+AGG + chr6_4:88478828-88478847 Msa1002660:CDS 35.0%
ATGAATGGGATCACTTGAAA+TGG + chr6_4:88478880-88478899 Msa1002660:CDS 35.0%
AGTGTTATCTATGCATGCTT+TGG + chr6_4:88478924-88478943 Msa1002660:CDS 35.0%
AGAGTTGAAAAAATGGCTTG+AGG + chr6_4:88479052-88479071 Msa1002660:CDS 35.0%
AAAAATTGGTCCGCAAAAAG+TGG - chr6_4:88479242-88479261 None:intergenic 35.0%
AGAAAAAGAATTAGGGAGCT+TGG + chr6_4:88479428-88479447 Msa1002660:CDS 35.0%
AATTAGGGAGCTTGGTAAAA+TGG + chr6_4:88479436-88479455 Msa1002660:CDS 35.0%
GCTTGGTAAAATGGCTAAAA+AGG + chr6_4:88479445-88479464 Msa1002660:CDS 35.0%
!!! AAAGTGTAGTTTTGGGTCTT+GGG - chr6_4:88478070-88478089 None:intergenic 35.0%
!! CTTTGTGTTGTTTCCAATGA+TGG + chr6_4:88478086-88478105 Msa1002660:CDS 35.0%
! TTTTTGCAATGTCCATCATG+GGG - chr6_4:88478128-88478147 None:intergenic 35.0%
!!! GAAACGAGATGCATTTTTTG+GGG - chr6_4:88478193-88478212 None:intergenic 35.0%
!!! GTGAAACGAGATGCATTTTT+TGG - chr6_4:88478195-88478214 None:intergenic 35.0%
GAATTTCCATGTAAAGAGTC+TGG + chr6_4:88478270-88478289 Msa1002660:CDS 35.0%
! ACAGCTTTTCAACTTCTTGT+TGG - chr6_4:88478377-88478396 None:intergenic 35.0%
CAATAATATGGCCGAAATCA+TGG + chr6_4:88478545-88478564 Msa1002660:CDS 35.0%
TCTGAATACTTTGAATTGCC+TGG + chr6_4:88478579-88478598 Msa1002660:CDS 35.0%
GAAATGACAATAGCACAAAC+AGG + chr6_4:88478618-88478637 Msa1002660:CDS 35.0%
AACAGGACTAGGAGAATTAA+AGG + chr6_4:88478635-88478654 Msa1002660:CDS 35.0%
ACAGGACTAGGAGAATTAAA+GGG + chr6_4:88478636-88478655 Msa1002660:CDS 35.0%
TCCTGTATCACTTAGTAACA+CGG + chr6_4:88478803-88478822 Msa1002660:CDS 35.0%
! ACTTAGTAACACGGATTACT+TGG + chr6_4:88478812-88478831 Msa1002660:CDS 35.0%
! TAACACGGATTACTTGGATA+AGG + chr6_4:88478818-88478837 Msa1002660:CDS 35.0%
TACTTGGATAAGGTTCAAAG+AGG + chr6_4:88478828-88478847 Msa1002660:CDS 35.0%
ATGAATGGGATCACTTGAAA+TGG + chr6_4:88478880-88478899 Msa1002660:CDS 35.0%
AGTGTTATCTATGCATGCTT+TGG + chr6_4:88478924-88478943 Msa1002660:CDS 35.0%
AGAGTTGAAAAAATGGCTTG+AGG + chr6_4:88479052-88479071 Msa1002660:CDS 35.0%
AAAAATTGGTCCGCAAAAAG+TGG - chr6_4:88479242-88479261 None:intergenic 35.0%
AGAAAAAGAATTAGGGAGCT+TGG + chr6_4:88479428-88479447 Msa1002660:CDS 35.0%
AATTAGGGAGCTTGGTAAAA+TGG + chr6_4:88479436-88479455 Msa1002660:CDS 35.0%
GCTTGGTAAAATGGCTAAAA+AGG + chr6_4:88479445-88479464 Msa1002660:CDS 35.0%
!!! CAAAGTGTAGTTTTGGGTCT+TGG - chr6_4:88478071-88478090 None:intergenic 40.0%
TTGTTTCCAATGATGGCACA+AGG + chr6_4:88478093-88478112 Msa1002660:CDS 40.0%
GGTAATCCAGACTCTTTACA+TGG - chr6_4:88478279-88478298 None:intergenic 40.0%
AAAGAGTCTGGATTACCAGA+AGG + chr6_4:88478282-88478301 Msa1002660:CDS 40.0%
AAGAGTCTGGATTACCAGAA+GGG + chr6_4:88478283-88478302 Msa1002660:CDS 40.0%
CAATGCATTGAGGAAGTTTG+AGG - chr6_4:88478346-88478365 None:intergenic 40.0%
GGAGAAACTTCAATGCATTG+AGG - chr6_4:88478356-88478375 None:intergenic 40.0%
TCAGAGATGATACAAGTTGC+TGG - chr6_4:88478417-88478436 None:intergenic 40.0%
! TCAATTTTGTCAGGGATACC+AGG - chr6_4:88478600-88478619 None:intergenic 40.0%
ACAATAGCACAAACAGGACT+AGG + chr6_4:88478624-88478643 Msa1002660:CDS 40.0%
!! TGACTTGCTTGAAGCTGAAA+CGG + chr6_4:88478683-88478702 Msa1002660:CDS 40.0%
AAGCTGAAACGGGTAGTTAT+GGG + chr6_4:88478694-88478713 Msa1002660:CDS 40.0%
AGTTAGAGCCAACATATGCA+AGG + chr6_4:88478739-88478758 Msa1002660:CDS 40.0%
GTTAGAGCCAACATATGCAA+GGG + chr6_4:88478740-88478759 Msa1002660:CDS 40.0%
! TCCGTGTTACTAAGTGATAC+AGG - chr6_4:88478807-88478826 None:intergenic 40.0%
TGGCTTGATTCTCAGAAACA+AGG + chr6_4:88478900-88478919 Msa1002660:CDS 40.0%
GGCTTGATTCTCAGAAACAA+GGG + chr6_4:88478901-88478920 Msa1002660:CDS 40.0%
AAACCAAGCTCTATCAACTG+TGG - chr6_4:88478972-88478991 None:intergenic 40.0%
AGAGCTTGGTTTAGCATTAG+AGG + chr6_4:88478980-88478999 Msa1002660:CDS 40.0%
AAAAAATGGCTTGAGGTGAG+TGG + chr6_4:88479059-88479078 Msa1002660:CDS 40.0%
GGATTTGAGGGAAGAATCAA+TGG + chr6_4:88479080-88479099 Msa1002660:CDS 40.0%
TTGTCACATCAAGCAATTGG+AGG + chr6_4:88479146-88479165 Msa1002660:CDS 40.0%
! ACTCTAGAAGCAATATGTGC+TGG + chr6_4:88479197-88479216 Msa1002660:CDS 40.0%
AAAAGTGGCCATGTAACCAT+TGG - chr6_4:88479227-88479246 None:intergenic 40.0%
GGTGAAGAGTCCTATGAAAT+GGG + chr6_4:88479310-88479329 Msa1002660:CDS 40.0%
GTGAAGAGTCCTATGAAATG+GGG + chr6_4:88479311-88479330 Msa1002660:CDS 40.0%
GCTAAAAAGGCTGTAGAAAG+AGG + chr6_4:88479458-88479477 Msa1002660:CDS 40.0%
AAAAAGGCTGTAGAAAGAGG+CGG + chr6_4:88479461-88479480 Msa1002660:CDS 40.0%
!!! CAAAGTGTAGTTTTGGGTCT+TGG - chr6_4:88478071-88478090 None:intergenic 40.0%
TTGTTTCCAATGATGGCACA+AGG + chr6_4:88478093-88478112 Msa1002660:CDS 40.0%
GGTAATCCAGACTCTTTACA+TGG - chr6_4:88478279-88478298 None:intergenic 40.0%
AAAGAGTCTGGATTACCAGA+AGG + chr6_4:88478282-88478301 Msa1002660:CDS 40.0%
AAGAGTCTGGATTACCAGAA+GGG + chr6_4:88478283-88478302 Msa1002660:CDS 40.0%
CAATGCATTGAGGAAGTTTG+AGG - chr6_4:88478346-88478365 None:intergenic 40.0%
GGAGAAACTTCAATGCATTG+AGG - chr6_4:88478356-88478375 None:intergenic 40.0%
TCAGAGATGATACAAGTTGC+TGG - chr6_4:88478417-88478436 None:intergenic 40.0%
! TCAATTTTGTCAGGGATACC+AGG - chr6_4:88478600-88478619 None:intergenic 40.0%
ACAATAGCACAAACAGGACT+AGG + chr6_4:88478624-88478643 Msa1002660:CDS 40.0%
!! TGACTTGCTTGAAGCTGAAA+CGG + chr6_4:88478683-88478702 Msa1002660:CDS 40.0%
AAGCTGAAACGGGTAGTTAT+GGG + chr6_4:88478694-88478713 Msa1002660:CDS 40.0%
AGTTAGAGCCAACATATGCA+AGG + chr6_4:88478739-88478758 Msa1002660:CDS 40.0%
GTTAGAGCCAACATATGCAA+GGG + chr6_4:88478740-88478759 Msa1002660:CDS 40.0%
! TCCGTGTTACTAAGTGATAC+AGG - chr6_4:88478807-88478826 None:intergenic 40.0%
TGGCTTGATTCTCAGAAACA+AGG + chr6_4:88478900-88478919 Msa1002660:CDS 40.0%
GGCTTGATTCTCAGAAACAA+GGG + chr6_4:88478901-88478920 Msa1002660:CDS 40.0%
AAACCAAGCTCTATCAACTG+TGG - chr6_4:88478972-88478991 None:intergenic 40.0%
AGAGCTTGGTTTAGCATTAG+AGG + chr6_4:88478980-88478999 Msa1002660:CDS 40.0%
AAAAAATGGCTTGAGGTGAG+TGG + chr6_4:88479059-88479078 Msa1002660:CDS 40.0%
GGATTTGAGGGAAGAATCAA+TGG + chr6_4:88479080-88479099 Msa1002660:CDS 40.0%
TTGTCACATCAAGCAATTGG+AGG + chr6_4:88479146-88479165 Msa1002660:CDS 40.0%
! ACTCTAGAAGCAATATGTGC+TGG + chr6_4:88479197-88479216 Msa1002660:CDS 40.0%
AAAAGTGGCCATGTAACCAT+TGG - chr6_4:88479227-88479246 None:intergenic 40.0%
GGTGAAGAGTCCTATGAAAT+GGG + chr6_4:88479310-88479329 Msa1002660:CDS 40.0%
GTGAAGAGTCCTATGAAATG+GGG + chr6_4:88479311-88479330 Msa1002660:CDS 40.0%
GCTAAAAAGGCTGTAGAAAG+AGG + chr6_4:88479458-88479477 Msa1002660:CDS 40.0%
AAAAAGGCTGTAGAAAGAGG+CGG + chr6_4:88479461-88479480 Msa1002660:CDS 40.0%
!!! ACGAGATGCATTTTTTGGGG+TGG - chr6_4:88478190-88478209 None:intergenic 45.0%
GAGAATTAAAGGGCGAAGCT+TGG + chr6_4:88478646-88478665 Msa1002660:CDS 45.0%
! GACTTGCTTGAAGCTGAAAC+GGG + chr6_4:88478684-88478703 Msa1002660:CDS 45.0%
GAAGCTGAAACGGGTAGTTA+TGG + chr6_4:88478693-88478712 Msa1002660:CDS 45.0%
! CTTGAGGTGAGTGGATTTGA+GGG + chr6_4:88479068-88479087 Msa1002660:CDS 45.0%
GAGGGAAGAATCAATGGTAG+AGG + chr6_4:88479086-88479105 Msa1002660:CDS 45.0%
TGGTAGAGGCCTAGTGATTA+AGG + chr6_4:88479100-88479119 Msa1002660:CDS 45.0%
GGTAGAGGCCTAGTGATTAA+GGG + chr6_4:88479101-88479120 Msa1002660:CDS 45.0%
AGGCCTAGTGATTAAGGGTT+GGG + chr6_4:88479106-88479125 Msa1002660:CDS 45.0%
! AATATGTGCTGGTGTGCCAA+TGG + chr6_4:88479208-88479227 Msa1002660:CDS 45.0%
!!! GGTTACATGGCCACTTTTTG+CGG + chr6_4:88479229-88479248 Msa1002660:CDS 45.0%
GGGTGAAGAGTCCTATGAAA+TGG + chr6_4:88479309-88479328 Msa1002660:CDS 45.0%
TCTTCCTCACCCCATTTCAT+AGG - chr6_4:88479323-88479342 None:intergenic 45.0%
GGAAGAAGAAAGTGACGTGT+TGG + chr6_4:88479337-88479356 Msa1002660:CDS 45.0%
!!! ACGAGATGCATTTTTTGGGG+TGG - chr6_4:88478190-88478209 None:intergenic 45.0%
GAGAATTAAAGGGCGAAGCT+TGG + chr6_4:88478646-88478665 Msa1002660:CDS 45.0%
! GACTTGCTTGAAGCTGAAAC+GGG + chr6_4:88478684-88478703 Msa1002660:CDS 45.0%
GAAGCTGAAACGGGTAGTTA+TGG + chr6_4:88478693-88478712 Msa1002660:CDS 45.0%
! CTTGAGGTGAGTGGATTTGA+GGG + chr6_4:88479068-88479087 Msa1002660:CDS 45.0%
GAGGGAAGAATCAATGGTAG+AGG + chr6_4:88479086-88479105 Msa1002660:CDS 45.0%
TGGTAGAGGCCTAGTGATTA+AGG + chr6_4:88479100-88479119 Msa1002660:CDS 45.0%
GGTAGAGGCCTAGTGATTAA+GGG + chr6_4:88479101-88479120 Msa1002660:CDS 45.0%
AGGCCTAGTGATTAAGGGTT+GGG + chr6_4:88479106-88479125 Msa1002660:CDS 45.0%
! AATATGTGCTGGTGTGCCAA+TGG + chr6_4:88479208-88479227 Msa1002660:CDS 45.0%
!!! GGTTACATGGCCACTTTTTG+CGG + chr6_4:88479229-88479248 Msa1002660:CDS 45.0%
GGGTGAAGAGTCCTATGAAA+TGG + chr6_4:88479309-88479328 Msa1002660:CDS 45.0%
TCTTCCTCACCCCATTTCAT+AGG - chr6_4:88479323-88479342 None:intergenic 45.0%
GGAAGAAGAAAGTGACGTGT+TGG + chr6_4:88479337-88479356 Msa1002660:CDS 45.0%
!! ATGTGGCCTTGTGCCATCAT+TGG - chr6_4:88478102-88478121 None:intergenic 50.0%
TGTCCATCATGGGGATCATG+TGG - chr6_4:88478119-88478138 None:intergenic 50.0%
TCTGGATTACCAGAAGGGTG+TGG + chr6_4:88478288-88478307 Msa1002660:CDS 50.0%
! CTGGATTACCAGAAGGGTGT+GGG + chr6_4:88478289-88478308 Msa1002660:CDS 50.0%
TCAAGATTCCCACACCCTTC+TGG - chr6_4:88478300-88478319 None:intergenic 50.0%
CTTGACATGCTACCTGCACT+TGG + chr6_4:88478315-88478334 Msa1002660:CDS 50.0%
CCAAGCTCTATCAACTGTGG+TGG - chr6_4:88478969-88478988 None:intergenic 50.0%
!! CCACCACAGTTGATAGAGCT+TGG + chr6_4:88478966-88478985 Msa1002660:CDS 50.0%
! GCTTGAGGTGAGTGGATTTG+AGG + chr6_4:88479067-88479086 Msa1002660:CDS 50.0%
GAGGCCTAGTGATTAAGGGT+TGG + chr6_4:88479105-88479124 Msa1002660:CDS 50.0%
GAGCCCAACCCTTAATCACT+AGG - chr6_4:88479112-88479131 None:intergenic 50.0%
GGAGGCTTCTTAACACACTG+CGG + chr6_4:88479164-88479183 Msa1002660:CDS 50.0%
GCTTCTTAACACACTGCGGT+TGG + chr6_4:88479168-88479187 Msa1002660:CDS 50.0%
CTGGTGTGCCAATGGTTACA+TGG + chr6_4:88479216-88479235 Msa1002660:CDS 50.0%
GAGTCCTATGAAATGGGGTG+AGG + chr6_4:88479316-88479335 Msa1002660:CDS 50.0%
!! ATGTGGCCTTGTGCCATCAT+TGG - chr6_4:88478102-88478121 None:intergenic 50.0%
TGTCCATCATGGGGATCATG+TGG - chr6_4:88478119-88478138 None:intergenic 50.0%
TCTGGATTACCAGAAGGGTG+TGG + chr6_4:88478288-88478307 Msa1002660:CDS 50.0%
! CTGGATTACCAGAAGGGTGT+GGG + chr6_4:88478289-88478308 Msa1002660:CDS 50.0%
TCAAGATTCCCACACCCTTC+TGG - chr6_4:88478300-88478319 None:intergenic 50.0%
CTTGACATGCTACCTGCACT+TGG + chr6_4:88478315-88478334 Msa1002660:CDS 50.0%
CCAAGCTCTATCAACTGTGG+TGG - chr6_4:88478969-88478988 None:intergenic 50.0%
!! CCACCACAGTTGATAGAGCT+TGG + chr6_4:88478966-88478985 Msa1002660:CDS 50.0%
! GCTTGAGGTGAGTGGATTTG+AGG + chr6_4:88479067-88479086 Msa1002660:CDS 50.0%
GAGGCCTAGTGATTAAGGGT+TGG + chr6_4:88479105-88479124 Msa1002660:CDS 50.0%
GAGCCCAACCCTTAATCACT+AGG - chr6_4:88479112-88479131 None:intergenic 50.0%
GGAGGCTTCTTAACACACTG+CGG + chr6_4:88479164-88479183 Msa1002660:CDS 50.0%
GCTTCTTAACACACTGCGGT+TGG + chr6_4:88479168-88479187 Msa1002660:CDS 50.0%
CTGGTGTGCCAATGGTTACA+TGG + chr6_4:88479216-88479235 Msa1002660:CDS 50.0%
GAGTCCTATGAAATGGGGTG+AGG + chr6_4:88479316-88479335 Msa1002660:CDS 50.0%
AGGCCACATGATCCCCATGA+TGG + chr6_4:88478113-88478132 Msa1002660:CDS 55.0%
CATGCTACCTGCACTTGGCA+TGG + chr6_4:88478320-88478339 Msa1002660:CDS 55.0%
! TTTGAGGCCATGCCAAGTGC+AGG - chr6_4:88478330-88478349 None:intergenic 55.0%
AGGCCACATGATCCCCATGA+TGG + chr6_4:88478113-88478132 Msa1002660:CDS 55.0%
CATGCTACCTGCACTTGGCA+TGG + chr6_4:88478320-88478339 Msa1002660:CDS 55.0%
! TTTGAGGCCATGCCAAGTGC+AGG - chr6_4:88478330-88478349 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 88478060 88479583 88478060 ID=Msa1002660;Name=Msa1002660
chr6_4 mRNA 88478060 88479583 88478060 ID=Msa1002660-mRNA-1;Parent=Msa1002660;Name=Msa1002660-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|-1|0|1|-1|1|1|0|507
chr6_4 exon 88478060 88479583 88478060 ID=Msa1002660-mRNA-1:exon:17299;Parent=Msa1002660-mRNA-1
chr6_4 CDS 88478060 88479583 88478060 ID=Msa1002660-mRNA-1:cds;Parent=Msa1002660-mRNA-1
Gene Sequence

>Msa1002660

ATGGTATCCCAAGACCCAAAACTACACTTTGTGTTGTTTCCAATGATGGCACAAGGCCACATGATCCCCATGATGGACATTGCAAAAATATTGGCACAACATCAAAATGTTATTGTTACAATAGTAACCACCCCAAAAAATGCATCTCGTTTCACATCAATTGTAGCACGTTATGTTGAATATGCTCTTCACATTCAATTAGTCCAACTTGAATTTCCATGTAAAGAGTCTGGATTACCAGAAGGGTGTGGGAATCTTGACATGCTACCTGCACTTGGCATGGCCTCAAACTTCCTCAATGCATTGAAGTTTCTCCAACAAGAAGTTGAAAAGCTGTTTGAAGAGTTCACAACACCAGCAACTTGTATCATCTCTGATATGTGTTTGCCATATACATTTCATGTAGCTAGAAAGTTCAATATTCCAAGAATTTCTTTTCTTGGAGTAAGTTGCTTCCATCTCTTCAATATGCATAATTTTCATGTCAATAATATGGCCGAAATCATGGCTAATAAAGAATCTGAATACTTTGAATTGCCTGGTATCCCTGACAAAATTGAAATGACAATAGCACAAACAGGACTAGGAGAATTAAAGGGCGAAGCTTGGAAACAATTTAATGATGACTTGCTTGAAGCTGAAACGGGTAGTTATGGGATGCTCGTGAATTCTTTTGAAGAGTTAGAGCCAACATATGCAAGGGATTATAAAAAGGTAAGAAATGATAAAGTTTGGTGTATTGGTCCTGTATCACTTAGTAACACGGATTACTTGGATAAGGTTCAAAGAGGTAATAATAATATTAATAAGGATTCAAATGATGAATGGGATCACTTGAAATGGCTTGATTCTCAGAAACAAGGGAGTGTTATCTATGCATGCTTTGGAAGTTTATGCAATTTAACACCACCACAGTTGATAGAGCTTGGTTTAGCATTAGAGGCAACAAAAAGACCTTTTATTTGGGTTTTAAGAGAGGGAAATCAGTTAGAAGAGTTGAAAAAATGGCTTGAGGTGAGTGGATTTGAGGGAAGAATCAATGGTAGAGGCCTAGTGATTAAGGGTTGGGCTCCTCAGTTATTGATATTGTCACATCAAGCAATTGGAGGCTTCTTAACACACTGCGGTTGGAATTCTACTCTAGAAGCAATATGTGCTGGTGTGCCAATGGTTACATGGCCACTTTTTGCGGACCAATTTTTGAATGAAAGTTTAGTTGTACAAATATTAAATGTTGGTGTGAAAATTGGGGTGAAGAGTCCTATGAAATGGGGTGAGGAAGAAGAAAGTGACGTGTTGGTCAAGAAAGAAGATGTTGAAAGAGGAATAGAAATGTTAATGGATGATACAAGTGAAAGTGAAGAAAGAAGAAAAAGAATTAGGGAGCTTGGTAAAATGGCTAAAAAGGCTGTAGAAAGAGGCGGATCTTCTCACTCTAATTTTACATTGTTTATCCAAGATATCATGCAAAAAAGTAAGGATATGGTGTCATCATTTGCCAATGAAAATACCAATTCAAAATGA
Protein sequence

>Msa1002660

MVSQDPKLHFVLFPMMAQGHMIPMMDIAKILAQHQNVIVTIVTTPKNASRFTSIVARYVEYALHIQLVQLEFPCKESGLPEGCGNLDMLPALGMASNFLNALKFLQQEVEKLFEEFTTPATCIISDMCLPYTFHVARKFNIPRISFLGVSCFHLFNMHNFHVNNMAEIMANKESEYFELPGIPDKIEMTIAQTGLGELKGEAWKQFNDDLLEAETGSYGMLVNSFEELEPTYARDYKKVRNDKVWCIGPVSLSNTDYLDKVQRGNNNINKDSNDEWDHLKWLDSQKQGSVIYACFGSLCNLTPPQLIELGLALEATKRPFIWVLREGNQLEELKKWLEVSGFEGRINGRGLVIKGWAPQLLILSHQAIGGFLTHCGWNSTLEAICAGVPMVTWPLFADQFLNESLVVQILNVGVKIGVKSPMKWGEEEESDVLVKKEDVERGIEMLMDDTSESEERRKRIRELGKMAKKAVERGGSSHSNFTLFIQDIMQKSKDMVSSFANENTNSK*