AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1093430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1093430 MtrunA17_Chr7g0265101 91.913 507 39 2 1 507 1 505 0.0 960
Msa1093430 MtrunA17_Chr7g0265051 81.854 507 88 3 1 507 1 503 0.0 867
Msa1093430 MtrunA17_Chr4g0011051 79.837 491 96 2 1 490 1 489 0.0 816
Msa1093430 MtrunA17_Chr7g0265151 60.563 497 185 7 1 494 1 489 0.0 594
Msa1093430 MtrunA17_Chr7g0265041 57.114 492 199 7 9 495 11 495 0.0 556
Msa1093430 MtrunA17_Chr7g0275681 57.438 484 193 7 9 491 12 483 0.0 548
Msa1093430 MtrunA17_Chr5g0419761 50.507 493 235 6 1 490 1 487 1.21e-171 493
Msa1093430 MtrunA17_Chr1g0179901 47.465 493 247 6 3 490 10 495 3.72e-164 474
Msa1093430 MtrunA17_Chr5g0419771 46.612 487 249 6 8 490 35 514 5.94e-158 459
Msa1093430 MtrunA17_Chr7g0265111 49.898 491 233 7 8 493 38 520 4.46e-153 447
Msa1093430 MtrunA17_Chr7g0265141 47.862 491 245 7 1 487 1 484 2.89e-151 441
Msa1093430 MtrunA17_Chr8g0366391 39.798 495 273 12 1 488 1 477 1.00e-113 345
Msa1093430 MtrunA17_Chr4g0044501 39.794 485 270 10 8 488 9 475 5.67e-113 343
Msa1093430 MtrunA17_Chr4g0044511 37.903 496 285 11 1 492 32 508 5.56e-111 338
Msa1093430 MtrunA17_Chr7g0243931 38.878 499 281 10 7 495 15 499 5.37e-108 330
Msa1093430 MtrunA17_Chr5g0416741 38.382 482 286 7 8 488 12 483 4.22e-107 328
Msa1093430 MtrunA17_Chr4g0066151 37.751 498 266 13 4 488 13 479 1.37e-104 321
Msa1093430 MtrunA17_Chr4g0066221 37.022 497 285 11 2 490 6 482 5.17e-104 320
Msa1093430 MtrunA17_Chr5g0401851 37.526 485 293 7 6 488 7 483 5.38e-104 320
Msa1093430 MtrunA17_Chr7g0243631 37.649 502 283 11 7 495 11 495 2.44e-103 318
Msa1093430 MtrunA17_Chr6g0463891 38.540 493 272 11 8 488 11 484 2.48e-103 318
Msa1093430 MtrunA17_Chr7g0243681 36.072 499 290 11 7 495 9 488 7.36e-103 317
Msa1093430 MtrunA17_Chr7g0243951 37.275 499 288 11 7 495 9 492 1.08e-101 314
Msa1093430 MtrunA17_Chr4g0066261 37.271 491 279 13 7 488 11 481 2.10e-101 313
Msa1093430 MtrunA17_Chr7g0243861 37.959 490 282 9 7 488 12 487 1.26e-100 311
Msa1093430 MtrunA17_Chr8g0355221 37.451 510 295 11 2 507 8 497 1.97e-100 311
Msa1093430 MtrunA17_Chr4g0066131 36.056 502 280 14 4 494 8 479 2.05e-100 310
Msa1093430 MtrunA17_Chr7g0243871 36.454 502 275 12 1 488 1 472 8.46e-100 309
Msa1093430 MtrunA17_Chr4g0060511 35.178 506 293 13 7 495 9 496 1.58e-97 303
Msa1093430 MtrunA17_Chr7g0243771 38.000 500 268 15 5 488 2 475 2.66e-97 303
Msa1093430 MtrunA17_Chr4g0044521 38.241 489 260 15 7 486 9 464 2.81e-97 302
Msa1093430 MtrunA17_Chr7g0243781 35.845 491 296 8 1 488 1 475 3.01e-96 300
Msa1093430 MtrunA17_Chr4g0066171 35.010 497 283 14 2 490 14 478 6.47e-96 299
Msa1093430 MtrunA17_Chr4g0066281 36.511 493 270 13 7 491 12 469 2.69e-95 297
Msa1093430 MtrunA17_Chr7g0235051 36.289 485 264 11 7 487 9 452 2.81e-95 296
Msa1093430 MtrunA17_Chr4g0014061 34.969 489 294 10 1 485 1 469 4.79e-95 296
Msa1093430 MtrunA17_Chr7g0243801 37.600 500 276 14 1 488 1 476 2.91e-94 295
Msa1093430 MtrunA17_Chr6g0463861 34.538 498 289 13 2 490 6 475 1.24e-93 293
Msa1093430 MtrunA17_Chr4g0044481 40.376 426 212 8 1 424 19 404 1.23e-92 288
Msa1093430 MtrunA17_Chr1g0165701 36.456 491 293 11 2 488 8 483 1.44e-92 291
Msa1093430 MtrunA17_Chr2g0294931 36.183 503 291 13 2 495 6 487 2.87e-92 290
Msa1093430 MtrunA17_Chr7g0218311 37.000 500 286 13 2 494 11 488 2.09e-91 287
Msa1093430 MtrunA17_Chr8g0374971 33.605 491 295 12 8 488 11 480 1.75e-89 282
Msa1093430 MtrunA17_Chr4g0066201 34.747 495 284 13 2 488 11 474 1.90e-89 282
Msa1093430 MtrunA17_Chr8g0374931 35.586 503 294 13 2 495 6 487 3.49e-89 281
Msa1093430 MtrunA17_Chr5g0416821 36.546 498 272 13 3 488 8 473 3.82e-89 281
Msa1093430 MtrunA17_Chr6g0463851 35.200 500 288 13 2 488 6 482 7.97e-89 281
Msa1093430 MtrunA17_Chr7g0243761 35.953 509 265 14 3 498 6 466 3.16e-88 278
Msa1093430 MtrunA17_Chr5g0428081 35.029 511 275 13 2 490 6 481 2.20e-87 277
Msa1093430 MtrunA17_Chr2g0294921 35.685 496 290 13 2 488 155 630 2.60e-87 281
Msa1093430 MtrunA17_Chr5g0410941 34.677 496 291 12 2 488 18 489 4.07e-87 276
Msa1093430 MtrunA17_Chr8g0374901 33.535 495 292 13 7 490 12 480 1.68e-86 275
Msa1093430 MtrunA17_Chr7g0243851 34.949 495 264 13 7 495 9 451 8.12e-84 266
Msa1093430 MtrunA17_Chr8g0374941 34.073 496 297 14 7 494 949 1422 4.06e-82 278
Msa1093430 MtrunA17_Chr8g0374941 34.100 478 282 14 7 474 11 465 4.65e-79 269
Msa1093430 MtrunA17_Chr8g0374941 33.475 472 285 13 7 470 476 926 1.41e-72 251
Msa1093430 MtrunA17_Chr8g0350881 32.929 495 304 12 8 494 11 485 2.66e-79 256
Msa1093430 MtrunA17_Chr7g0243811 36.603 418 236 10 21 433 1 394 9.81e-74 238
Msa1093430 MtrunA17_Chr2g0294941 36.639 363 204 7 122 473 17 364 1.53e-69 227
Msa1093430 MtrunA17_Chr8g0369341 31.124 498 297 14 7 490 5 470 2.21e-68 227
Msa1093430 MtrunA17_Chr5g0420801 30.408 490 301 11 7 490 5 460 8.47e-68 225
Msa1093430 MtrunA17_Chr2g0307961 32.049 493 295 14 5 489 9 469 1.49e-64 216
Msa1093430 MtrunA17_Chr5g0440421 30.350 514 310 16 3 490 4 495 1.76e-62 212
Msa1093430 MtrunA17_Chr8g0361411 29.921 508 292 16 2 494 1 459 5.16e-56 194
Msa1093430 MtrunA17_Chr2g0329111 29.752 484 296 15 7 474 4 459 1.59e-55 193
Msa1093430 MtrunA17_Chr7g0243611 36.957 322 167 10 127 439 1 295 6.56e-55 186
Msa1093430 MtrunA17_Chr4g0050341 31.076 502 288 16 9 485 19 487 1.97e-53 187
Msa1093430 MtrunA17_Chr7g0243711 39.608 255 141 8 247 495 78 325 2.93e-53 182
Msa1093430 MtrunA17_Chr7g0231631 38.603 272 146 5 218 488 8 259 5.76e-53 180
Msa1093430 MtrunA17_Chr8g0373301 31.470 483 254 18 36 477 9 455 7.70e-53 185
Msa1093430 MtrunA17_Chr8g0336331 29.600 500 309 13 7 491 8 479 3.03e-52 184
Msa1093430 MtrunA17_Chr3g0078841 29.447 506 303 15 7 491 8 480 3.68e-52 184
Msa1093430 MtrunA17_Chr5g0431361 29.278 485 295 15 9 488 12 453 1.03e-51 182
Msa1093430 MtrunA17_Chr6g0454341 29.159 511 298 16 7 491 8 480 2.41e-50 179
Msa1093430 MtrunA17_Chr7g0275511 28.773 497 295 16 6 482 12 469 3.62e-50 179
Msa1093430 MtrunA17_Chr5g0431371 29.339 484 293 13 9 488 10 448 3.82e-50 177
Msa1093430 MtrunA17_Chr5g0448521 27.745 501 309 14 7 489 3 468 9.99e-50 177
Msa1093430 MtrunA17_Chr8g0377921 29.839 496 294 16 11 489 6 464 1.27e-49 177
Msa1093430 MtrunA17_Chr5g0431441 27.879 495 305 13 9 493 18 470 1.79e-49 176
Msa1093430 MtrunA17_Chr7g0217881 28.827 503 298 16 5 491 6 464 2.82e-49 176
Msa1093430 MtrunA17_Chr8g0339461 39.298 285 132 9 217 484 207 467 3.23e-49 176
Msa1093430 MtrunA17_Chr2g0278711 28.994 507 310 17 1 489 3 477 3.98e-49 176
Msa1093430 MtrunA17_Chr8g0339601 39.350 277 127 8 217 476 66 318 7.12e-49 171
Msa1093430 MtrunA17_Chr5g0431401 28.000 500 291 13 3 488 4 448 7.99e-49 174
Msa1093430 MtrunA17_Chr8g0339451 32.718 379 210 11 118 477 100 452 8.26e-49 174
Msa1093430 MtrunA17_Chr8g0336691 28.629 496 293 17 8 482 918 1373 1.42e-48 180
Msa1093430 MtrunA17_Chr8g0336691 28.343 501 284 19 5 477 9 462 2.87e-47 176
Msa1093430 MtrunA17_Chr8g0336691 28.484 488 266 18 8 477 479 901 1.70e-43 165
Msa1093430 MtrunA17_Chr8g0339631 31.362 389 213 12 118 484 108 464 1.78e-48 174
Msa1093430 MtrunA17_Chr6g0464861 28.629 496 289 18 9 490 11 455 1.83e-48 173
Msa1093430 MtrunA17_Chr6g0462531 28.600 493 283 17 10 477 5 453 2.19e-48 173
Msa1093430 MtrunA17_Chr8g0347281 30.061 489 273 19 11 477 20 461 2.64e-48 173
Msa1093430 MtrunA17_Chr7g0232391 29.577 497 276 22 8 477 5 454 3.56e-48 173
Msa1093430 MtrunA17_Chr5g0431421 29.124 491 301 13 3 490 4 450 4.25e-48 172
Msa1093430 MtrunA17_Chr6g0464881 30.339 501 281 22 9 493 11 459 4.63e-48 172
Msa1093430 MtrunA17_Chr8g0335161 29.577 497 289 15 7 482 4 460 4.94e-48 172
Msa1093430 MtrunA17_Chr6g0464841 28.486 502 283 23 9 490 11 456 5.64e-48 172
Msa1093430 MtrunA17_Chr6g0454181 27.734 512 306 14 7 491 8 482 5.88e-48 172
Msa1093430 MtrunA17_Chr6g0454301 29.167 504 307 16 7 491 261 733 6.16e-48 176
Msa1093430 MtrunA17_Chr6g0454301 34.127 252 134 7 244 489 5 230 8.68e-31 126
Msa1093430 MtrunA17_Chr8g0336651 28.405 514 297 16 8 496 780 1247 6.54e-48 178
Msa1093430 MtrunA17_Chr8g0336651 33.219 292 146 8 190 477 517 763 6.55e-38 148
Msa1093430 MtrunA17_Chr8g0336651 26.283 487 304 13 8 477 5 453 7.11e-38 148
Msa1093430 MtrunA17_Chr5g0442541 28.291 509 298 20 7 491 3 468 6.92e-48 172
Msa1093430 MtrunA17_Chr6g0454321 29.757 494 283 16 7 474 8 463 1.16e-47 175
Msa1093430 MtrunA17_Chr7g0243911 39.810 211 122 3 264 472 7 214 1.64e-47 164
Msa1093430 MtrunA17_Chr6g0453951 27.606 518 307 16 3 491 51 529 2.16e-47 172
Msa1093430 MtrunA17_Chr6g0454141 28.767 511 302 15 7 491 8 482 2.37e-47 171
Msa1093430 MtrunA17_Chr1g0207971 27.811 507 302 18 2 493 1 458 2.51e-47 170
Msa1093430 MtrunA17_Chr6g0454401 28.488 516 298 16 7 491 8 483 3.71e-47 170
Msa1093430 MtrunA17_Chr1g0173121 27.545 501 290 16 11 490 16 464 7.51e-47 169
Msa1093430 MtrunA17_Chr6g0464871 28.398 493 295 19 9 490 23 468 8.43e-47 169
Msa1093430 MtrunA17_Chr8g0347271 30.041 486 277 20 11 477 21 462 1.22e-46 169
Msa1093430 MtrunA17_Chr8g0335141 29.545 484 285 16 12 477 12 457 1.22e-46 169
Msa1093430 MtrunA17_Chr6g0462571 27.823 496 280 17 10 477 5 450 1.23e-46 169
Msa1093430 MtrunA17_Chr6g0459311 29.495 495 280 18 7 477 11 460 3.13e-46 167
Msa1093430 MtrunA17_Chr6g0449931 28.400 500 292 17 7 482 4 461 4.33e-46 167
Msa1093430 MtrunA17_Chr6g0454261 28.261 506 317 15 4 491 5 482 5.29e-46 167
Msa1093430 MtrunA17_Chr5g0426431 28.571 504 304 15 9 491 12 480 5.37e-46 167
Msa1093430 MtrunA17_Chr7g0232401 28.543 494 287 17 8 477 5 456 7.83e-46 166
Msa1093430 MtrunA17_Chr5g0442561 26.577 523 296 19 7 491 3 475 1.07e-45 166
Msa1093430 MtrunA17_Chr6g0454151 29.032 527 286 21 4 492 5 481 1.41e-45 166
Msa1093430 MtrunA17_Chr8g0357361 42.647 204 106 5 217 419 61 254 1.60e-45 160
Msa1093430 MtrunA17_Chr6g0454331 28.681 523 295 19 4 491 2 481 2.48e-45 165
Msa1093430 MtrunA17_Chr7g0232411 28.373 504 283 20 8 482 5 459 2.92e-45 165
Msa1093430 MtrunA17_Chr6g0454201 30.556 396 218 12 119 491 122 483 5.91e-45 164
Msa1093430 MtrunA17_Chr6g0454191 27.135 527 299 16 3 491 4 483 6.10e-45 164
Msa1093430 MtrunA17_Chr6g0454291 28.215 521 298 18 4 491 2 479 6.65e-45 164
Msa1093430 MtrunA17_Chr6g0454361 29.102 512 299 17 7 491 9 483 7.10e-45 164
Msa1093430 MtrunA17_Chr5g0442491 27.573 515 303 17 7 491 3 477 8.50e-45 164
Msa1093430 MtrunA17_Chr6g0462551 27.530 494 287 18 10 477 5 453 9.89e-45 164
Msa1093430 MtrunA17_Chr3g0112761 28.968 504 276 17 9 490 8 451 1.05e-44 163
Msa1093430 MtrunA17_Chr3g0118671 28.180 511 305 18 5 490 2 475 1.23e-44 163
Msa1093430 MtrunA17_Chr1g0159551 26.884 491 297 14 14 490 19 461 1.27e-44 163
Msa1093430 MtrunA17_Chr5g0442601 28.291 509 309 18 7 491 402 878 2.48e-44 167
Msa1093430 MtrunA17_Chr5g0442601 29.221 308 167 11 121 414 63 333 4.68e-24 106
Msa1093430 MtrunA17_Chr4g0053501 27.898 509 301 18 8 496 10 472 3.54e-44 162
Msa1093430 MtrunA17_Chr3g0118691 27.092 502 326 13 2 490 10 484 4.20e-44 162
Msa1093430 MtrunA17_Chr6g0462521 28.333 480 287 14 10 477 5 439 4.70e-44 161
Msa1093430 MtrunA17_Chr8g0377941 30.052 386 230 11 117 492 110 465 4.86e-44 162
Msa1093430 MtrunA17_Chr8g0334861 29.459 499 274 18 7 477 4 452 5.83e-44 161
Msa1093430 MtrunA17_Chr7g0232341 28.543 494 284 19 9 477 6 455 6.93e-44 161
Msa1093430 MtrunA17_Chr3g0092641 27.539 512 295 17 9 489 12 478 1.01e-43 161
Msa1093430 MtrunA17_Chr6g0486251 28.542 487 285 17 12 477 9 453 1.02e-43 160
Msa1093430 MtrunA17_Chr6g0486201 28.542 487 285 17 12 477 9 453 1.02e-43 160
Msa1093430 MtrunA17_Chr6g0464921 29.234 496 284 16 9 488 11 455 1.12e-43 160
Msa1093430 MtrunA17_Chr3g0098111 27.647 510 312 17 1 491 1 472 1.88e-43 160
Msa1093430 MtrunA17_Chr1g0161351 28.656 506 307 18 1 488 28 497 1.98e-43 160
Msa1093430 MtrunA17_Chr2g0302991 27.613 507 299 21 7 490 3 464 2.28e-43 159
Msa1093430 MtrunA17_Chr3g0118701 27.148 512 317 18 2 492 10 486 2.38e-43 160
Msa1093430 MtrunA17_Chr3g0122001 26.824 507 304 16 9 488 486 952 2.47e-43 164
Msa1093430 MtrunA17_Chr3g0122001 29.351 385 241 11 119 488 105 473 9.42e-43 162
Msa1093430 MtrunA17_Chr5g0429711 27.655 499 292 19 10 488 12 461 2.57e-43 159
Msa1093430 MtrunA17_Chr5g0442521 26.459 514 311 16 7 491 3 478 3.38e-43 159
Msa1093430 MtrunA17_Chr5g0414321 27.397 511 292 19 3 493 5 456 3.42e-43 159
Msa1093430 MtrunA17_Chr7g0250001 28.119 505 283 21 7 490 4 449 3.49e-43 159
Msa1093430 MtrunA17_Chr6g0454121 29.897 388 239 10 115 491 116 481 4.08e-43 159
Msa1093430 MtrunA17_Chr1g0207831 27.308 509 311 19 1 492 1 467 4.54e-43 159
Msa1093430 MtrunA17_Chr8g0361371 26.931 505 291 15 4 477 2 459 5.02e-43 159
Msa1093430 MtrunA17_Chr8g0370941 25.607 535 321 16 9 505 8 503 5.48e-43 159
Msa1093430 MtrunA17_Chr1g0207951 27.976 504 298 17 1 488 116 570 7.61e-43 163
Msa1093430 MtrunA17_Chr1g0207951 25.641 507 318 17 1 491 648 1111 4.90e-39 152
Msa1093430 MtrunA17_Chr5g0414331 27.835 485 297 15 8 485 12 450 1.11e-42 158
Msa1093430 MtrunA17_Chr8g0359821 26.892 502 321 15 7 491 8 480 1.14e-42 158
Msa1093430 MtrunA17_Chr8g0382021 27.126 494 301 17 14 490 39 490 1.20e-42 158
Msa1093430 MtrunA17_Chr3g0118771 27.811 507 314 16 3 490 17 490 1.49e-42 158
Msa1093430 MtrunA17_Chr3g0079731 34.589 292 146 9 217 486 210 478 2.03e-42 157
Msa1093430 MtrunA17_Chr7g0232331 28.049 492 289 18 9 477 6 455 2.07e-42 157
Msa1093430 MtrunA17_Chr5g0442511 27.451 510 289 18 2 488 42 493 2.16e-42 157
Msa1093430 MtrunA17_Chr1g0153451 26.613 496 300 19 8 482 5 457 2.22e-42 157
Msa1093430 MtrunA17_Chr5g0429681 26.531 490 298 18 7 477 42 488 2.82e-42 157
Msa1093430 MtrunA17_Chr3g0118711 27.237 514 306 17 7 492 11 484 3.11e-42 157
Msa1093430 MtrunA17_Chr6g0454351 27.466 517 296 17 1 491 4 467 3.57e-42 156
Msa1093430 MtrunA17_Chr5g0442581 27.938 519 306 19 7 495 3 483 3.63e-42 157
Msa1093430 MtrunA17_Chr3g0106231 27.756 508 283 18 4 490 9 453 4.83e-42 156
Msa1093430 MtrunA17_Chr4g0066141 45.029 171 80 5 325 488 188 351 5.67e-42 153
Msa1093430 MtrunA17_Chr4g0066141 29.688 192 114 5 39 229 9 180 6.91e-18 85.1
Msa1093430 MtrunA17_Chr1g0207861 28.056 499 308 16 9 491 8 471 9.40e-42 155
Msa1093430 MtrunA17_Chr8g0336741 27.129 505 313 16 7 496 11 475 1.06e-41 155
Msa1093430 MtrunA17_Chr6g0454131 27.219 507 314 16 7 491 8 481 1.68e-41 155
Msa1093430 MtrunA17_Chr3g0121991 27.888 502 305 16 9 488 79 545 1.76e-41 156
Msa1093430 MtrunA17_Chr6g0453961 27.075 506 320 15 6 491 16 492 1.88e-41 155
Msa1093430 MtrunA17_Chr2g0302961 26.600 500 316 19 7 490 3 467 2.04e-41 154
Msa1093430 MtrunA17_Chr8g0336731 28.195 493 297 17 11 485 34 487 3.09e-41 154
Msa1093430 MtrunA17_Chr3g0112771 27.310 487 298 16 11 489 14 452 4.19e-41 153
Msa1093430 MtrunA17_Chr6g0462541 25.948 501 285 15 10 477 5 452 4.94e-41 154
Msa1093430 MtrunA17_Chr8g0339441 42.723 213 96 5 279 477 218 418 1.56e-40 151
Msa1093430 MtrunA17_Chr6g0452771 28.599 514 299 20 7 491 8 482 1.94e-40 152
Msa1093430 MtrunA17_Chr5g0412101 28.138 494 314 16 9 492 12 474 3.70e-40 151
Msa1093430 MtrunA17_Chr7g0249931 26.139 505 293 16 8 490 39 485 7.90e-40 150
Msa1093430 MtrunA17_Chr5g0412131 28.600 507 294 18 9 492 12 473 8.08e-40 150
Msa1093430 MtrunA17_Chr8g0380531 28.195 493 298 18 8 488 9 457 8.87e-40 149
Msa1093430 MtrunA17_Chr8g0365811 27.327 505 312 16 7 493 495 962 9.06e-40 154
Msa1093430 MtrunA17_Chr8g0365811 27.378 431 267 13 8 417 8 413 8.91e-34 136
Msa1093430 MtrunA17_Chr1g0207981 27.290 513 319 16 1 494 1 478 1.47e-39 149
Msa1093430 MtrunA17_Chr6g0454211 28.046 517 304 17 4 491 292 769 1.66e-39 152
Msa1093430 MtrunA17_Chr6g0454211 30.851 188 91 6 205 391 87 236 2.90e-18 88.2
Msa1093430 MtrunA17_Chr4g0053321 27.237 503 318 18 1 492 18 483 1.70e-39 149
Msa1093430 MtrunA17_Chr8g0334851 36.655 281 138 10 219 484 210 465 1.71e-39 149
Msa1093430 MtrunA17_Chr7g0218791 27.181 493 282 19 9 481 5 440 2.38e-39 148
Msa1093430 MtrunA17_Chr6g0454221 36.626 243 131 6 247 487 8 229 7.79e-39 143
Msa1093430 MtrunA17_Chr5g0423981 26.978 493 301 17 6 491 7 447 1.24e-38 146
Msa1093430 MtrunA17_Chr7g0218841 27.347 490 285 17 9 485 6 437 2.19e-38 145
Msa1093430 MtrunA17_Chr8g0367221 29.314 423 238 17 4 402 7 392 4.87e-38 149
Msa1093430 MtrunA17_Chr8g0367221 26.598 485 293 17 2 466 1281 1722 8.70e-36 142
Msa1093430 MtrunA17_Chr8g0367221 29.187 418 246 14 4 402 793 1179 2.57e-34 138
Msa1093430 MtrunA17_Chr7g0218831 26.994 489 287 16 9 485 6 436 5.45e-38 144
Msa1093430 MtrunA17_Chr8g0334831 26.430 507 294 17 7 477 4 467 6.35e-38 145
Msa1093430 MtrunA17_Chr7g0232311 29.539 369 194 13 135 477 124 452 6.94e-38 144
Msa1093430 MtrunA17_Chr5g0409591 27.397 438 238 13 105 491 76 484 8.89e-38 144
Msa1093430 MtrunA17_Chr5g0403641 28.180 511 281 18 1 487 53 501 1.43e-37 144
Msa1093430 MtrunA17_Chr7g0249981 27.016 496 298 20 7 489 23 467 1.89e-37 144
Msa1093430 MtrunA17_Chr7g0241781 28.172 465 267 21 7 467 7 408 2.77e-37 142
Msa1093430 MtrunA17_Chr5g0432731 31.502 273 159 5 220 490 52 298 4.88e-37 138
Msa1093430 MtrunA17_Chr5g0412111 26.923 494 318 15 9 492 5 465 2.65e-36 140
Msa1093430 MtrunA17_Chr3g0118751 25.692 506 295 16 5 490 2 446 3.48e-36 139
Msa1093430 MtrunA17_Chr1g0207931 26.411 496 274 16 1 488 85 497 5.20e-36 140
Msa1093430 MtrunA17_Chr7g0241801 27.623 467 270 20 5 466 4 407 5.97e-36 138
Msa1093430 MtrunA17_Chr5g0401721 28.306 484 308 18 17 489 16 471 7.42e-36 139
Msa1093430 MtrunA17_Chr1g0153461 36.681 229 118 7 279 496 4 216 1.75e-35 132
Msa1093430 MtrunA17_Chr6g0454271 34.940 249 134 7 247 491 65 289 2.67e-35 133
Msa1093430 MtrunA17_Chr4g0072761 32.830 265 143 7 222 486 221 450 2.99e-35 137
Msa1093430 MtrunA17_Chr6g0466831 27.097 465 296 16 8 467 17 443 4.34e-35 137
Msa1093430 MtrunA17_Chr2g0278721 28.747 487 270 18 8 465 516 954 3.72e-34 137
Msa1093430 MtrunA17_Chr2g0278721 27.601 471 289 17 8 466 14 444 2.18e-31 129
Msa1093430 MtrunA17_Chr4g0032331 26.061 495 273 18 10 476 9 438 7.20e-34 133
Msa1093430 MtrunA17_Chr6g0466841 26.237 465 300 16 8 467 17 443 1.94e-33 132
Msa1093430 MtrunA17_Chr6g0454371 38.743 191 99 4 301 491 1 173 3.86e-33 124
Msa1093430 MtrunA17_Chr3g0106251 30.515 272 160 7 220 490 52 295 5.71e-33 127
Msa1093430 MtrunA17_Chr4g0040691 27.048 525 284 22 1 491 1 460 7.21e-33 130
Msa1093430 MtrunA17_Chr4g0072771 26.923 494 294 18 7 486 23 463 9.90e-33 130
Msa1093430 MtrunA17_Chr6g0464091 27.406 478 295 17 2 466 11 449 1.40e-32 130
Msa1093430 MtrunA17_Chr6g0454171 32.283 254 124 8 244 491 101 312 3.10e-32 125
Msa1093430 MtrunA17_Chr3g0118721 30.515 272 169 7 220 490 39 291 3.27e-32 125
Msa1093430 MtrunA17_Chr5g0426401 32.482 274 160 9 219 489 60 311 4.67e-32 125
Msa1093430 MtrunA17_Chr4g0069611 27.872 470 284 20 8 466 14 439 4.70e-32 128
Msa1093430 MtrunA17_Chr5g0448551 27.021 470 265 19 1 450 1 412 5.83e-32 127
Msa1093430 MtrunA17_Chr3g0118661 26.190 504 325 13 1 487 5 478 5.84e-32 128
Msa1093430 MtrunA17_Chr7g0218811 25.051 487 285 16 9 477 15 439 8.49e-32 127
Msa1093430 MtrunA17_Chr7g0218821 36.500 200 106 5 279 477 261 440 2.29e-31 126
Msa1093430 MtrunA17_Chr8g0336251 26.036 507 310 15 8 492 6 469 2.68e-31 126
Msa1093430 MtrunA17_Chr8g0336321 26.036 507 310 15 8 492 6 469 3.31e-31 125
Msa1093430 MtrunA17_Chr7g0232351 27.805 410 234 17 8 391 5 378 3.66e-31 124
Msa1093430 MtrunA17_Chr2g0278741 29.512 471 280 21 8 466 96 526 4.26e-31 126
Msa1093430 MtrunA17_Chr4g0040711 26.515 528 281 21 1 490 1 459 1.59e-30 124
Msa1093430 MtrunA17_Chr6g0454251 28.605 423 237 17 4 391 2 394 1.59e-30 122
Msa1093430 MtrunA17_Chr4g0042891 26.654 514 312 21 5 498 3 471 3.21e-30 123
Msa1093430 MtrunA17_Chr8g0355011 27.877 391 193 12 119 491 45 364 4.74e-30 120
Msa1093430 MtrunA17_Chr5g0393591 23.092 498 304 15 9 497 17 444 8.30e-30 121
Msa1093430 MtrunA17_Chr3g0079711 34.536 194 105 4 305 486 3 186 2.66e-29 114
Msa1093430 MtrunA17_Chr4g0042931 24.951 509 325 19 5 498 3 469 1.35e-28 118
Msa1093430 MtrunA17_Chr2g0302851 27.848 474 279 22 8 466 15 440 4.66e-28 116
Msa1093430 MtrunA17_Chr2g0283041 24.314 510 310 17 8 498 6 458 6.15e-27 113
Msa1093430 MtrunA17_Chr6g0482061 25.352 497 302 19 9 476 11 467 6.71e-27 113
Msa1093430 MtrunA17_Chr1g0196851 25.786 477 291 14 1 462 41 469 1.06e-26 113
Msa1093430 MtrunA17_Chr8g0336261 40.789 152 73 3 301 452 1 135 1.18e-26 105
Msa1093430 MtrunA17_Chr7g0249961 31.925 213 122 7 279 489 69 260 1.25e-26 108
Msa1093430 MtrunA17_Chr8g0337381 39.041 146 73 3 351 493 1 133 4.12e-26 103
Msa1093430 MtrunA17_Chr7g0243921 34.615 182 110 3 7 188 38 210 8.78e-25 102
Msa1093430 MtrunA17_Chr3g0092031 34.392 189 103 7 281 466 6 176 5.71e-24 99.8
Msa1093430 MtrunA17_Chr5g0427571 35.897 195 116 4 227 419 52 239 3.99e-23 99.8
Msa1093430 MtrunA17_Chr4g0029151 24.576 472 288 17 7 462 18 437 5.40e-23 101
Msa1093430 MtrunA17_Chr6g0454231 27.473 273 138 7 219 490 7 220 7.49e-23 101
Msa1093430 MtrunA17_Chr7g0243731 53.521 71 33 0 349 419 6 76 1.56e-22 91.7
Msa1093430 MtrunA17_Chr4g0039881 23.654 520 282 20 19 501 2 443 4.96e-22 98.6
Msa1093430 MtrunA17_Chr5g0431431 30.263 228 111 5 220 441 156 341 5.01e-22 97.4
Msa1093430 MtrunA17_Chr7g0272701 36.301 146 85 3 85 226 11 152 6.78e-22 92.0
Msa1093430 MtrunA17_Chr4g0029131 23.922 464 301 17 7 462 10 429 1.41e-21 98.6
Msa1093430 MtrunA17_Chr2g0319801 26.509 464 273 17 8 452 7 421 1.35e-20 94.4
Msa1093430 MtrunA17_Chr1g0207881 34.559 136 80 3 356 491 261 387 1.02e-19 91.3
Msa1093430 MtrunA17_Chr2g0319761 25.745 470 302 17 6 466 5 436 1.54e-19 91.3
Msa1093430 MtrunA17_Chr2g0319751 25.270 463 284 18 6 452 482 898 2.01e-19 92.0
Msa1093430 MtrunA17_Chr2g0319751 24.130 460 265 19 8 452 7 397 1.79e-16 82.8
Msa1093430 MtrunA17_Chr2g0319791 24.672 458 293 15 6 452 5 421 9.57e-19 89.0
Msa1093430 MtrunA17_Chr7g0231651 33.679 193 109 6 8 192 13 194 5.74e-18 82.8
Msa1093430 MtrunA17_Chr2g0319731 25.439 456 288 15 8 452 24 438 1.86e-17 85.1
Msa1093430 MtrunA17_Chr7g0243721 41.667 120 58 5 210 324 23 135 5.75e-16 75.1
Msa1093430 MtrunA17_Chr2g0321331 33.333 171 87 5 282 452 87 230 2.98e-15 76.3
Msa1093430 MtrunA17_Chr6g0454391 40.230 87 32 3 368 451 13 82 7.84e-13 65.5
Msa1093430 MtrunA17_Chr5g0442501 23.242 327 219 8 7 326 3 304 1.07e-12 68.9
Msa1093430 MtrunA17_Chr7g0265071 54.098 61 27 1 432 491 1 61 1.25e-12 63.2
Msa1093430 MtrunA17_Chr4g0066231 35.897 78 49 1 390 467 1 77 4.96e-12 61.6
Msa1093430 MtrunA17_Chr6g0453981 27.684 177 113 5 177 352 67 229 4.94e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1093430 AT2G36750.1 54.021 485 217 3 6 490 7 485 0.0 546
Msa1093430 AT2G36800.1 54.839 496 211 6 1 490 1 489 0.0 539
Msa1093430 AT2G36760.1 53.086 486 223 2 6 491 11 491 0.0 537
Msa1093430 AT2G36780.1 53.183 487 219 4 6 490 11 490 0.0 530
Msa1093430 AT2G36770.1 52.857 490 222 4 6 493 11 493 0.0 524
Msa1093430 AT2G36790.1 54.433 485 212 4 8 490 12 489 0.0 520
Msa1093430 AT3G53160.1 51.111 495 234 5 1 494 1 488 1.09e-180 516
Msa1093430 AT3G53150.1 49.405 504 237 7 1 491 14 512 2.64e-168 486
Msa1093430 AT2G15480.2 39.679 499 268 11 7 488 8 490 1.35e-119 360
Msa1093430 AT2G15490.3 40.443 497 257 12 7 488 5 477 3.77e-119 359
Msa1093430 AT2G15480.1 39.592 490 271 10 7 488 8 480 1.48e-118 357
Msa1093430 AT2G15490.1 40.600 500 255 14 7 488 5 480 1.84e-117 355
Msa1093430 AT4G34131.1 40.845 497 266 13 2 488 1 479 4.62e-117 353
Msa1093430 AT4G34138.1 42.443 483 242 15 7 477 9 467 3.01e-112 341
Msa1093430 AT4G34135.1 39.024 492 271 12 7 488 9 481 5.42e-101 312
Msa1093430 AT5G14860.1 33.661 508 269 18 9 488 8 475 2.50e-74 243
Msa1093430 AT2G16890.2 33.134 501 283 20 9 494 9 472 7.54e-74 241
Msa1093430 AT1G73880.1 30.754 491 299 12 7 490 12 468 8.52e-72 236
Msa1093430 AT1G10400.1 31.579 494 288 18 7 487 5 461 1.23e-67 225
Msa1093430 AT2G16890.3 33.571 420 241 15 9 416 9 402 2.81e-66 220
Msa1093430 AT5G03490.1 31.633 490 277 17 9 487 19 461 1.70e-59 203
Msa1093430 AT4G34135.2 36.937 333 193 7 7 331 9 332 1.02e-58 197
Msa1093430 AT5G12890.1 28.682 516 311 17 1 491 1 484 1.68e-57 199
Msa1093430 AT1G51210.1 31.010 416 245 14 7 416 18 397 7.28e-54 187
Msa1093430 AT2G29740.1 29.741 501 305 14 4 488 5 474 1.48e-53 188
Msa1093430 AT1G22400.1 31.456 515 296 22 3 494 9 489 1.75e-53 188
Msa1093430 AT1G22360.1 29.077 509 297 18 7 489 8 478 1.78e-51 182
Msa1093430 AT1G07250.1 32.181 376 227 10 120 490 122 474 3.85e-50 179
Msa1093430 AT3G21760.1 28.185 518 301 15 7 490 2 482 1.02e-49 177
Msa1093430 AT1G06000.1 28.974 497 267 17 7 488 8 433 1.05e-49 176
Msa1093430 AT4G15550.1 28.628 503 300 17 6 489 12 474 1.31e-49 177
Msa1093430 AT1G78270.1 28.906 512 302 15 3 489 7 481 2.08e-49 177
Msa1093430 AT1G22380.1 30.309 518 289 19 2 489 6 481 6.35e-49 176
Msa1093430 AT2G30150.2 30.060 499 275 18 9 490 13 454 1.41e-48 174
Msa1093430 AT3G11340.1 28.571 504 288 14 1 490 1 446 1.79e-48 173
Msa1093430 AT2G29730.1 31.183 372 223 12 123 489 120 463 3.27e-48 173
Msa1093430 AT2G43820.1 33.245 379 214 14 119 491 104 449 7.06e-48 172
Msa1093430 AT1G01420.1 30.266 489 280 17 9 477 8 455 9.69e-48 172
Msa1093430 AT1G01420.2 30.266 489 280 17 9 477 11 458 1.17e-47 172
Msa1093430 AT2G30150.1 29.960 494 272 18 14 490 2 438 2.37e-47 170
Msa1093430 AT1G22360.2 28.376 511 286 19 7 489 8 466 3.53e-47 171
Msa1093430 AT3G21800.1 28.571 518 289 21 8 490 6 477 4.52e-47 171
Msa1093430 AT2G29710.1 26.096 502 305 16 10 489 6 463 8.42e-47 169
Msa1093430 AT2G31750.1 30.020 503 281 18 7 490 6 456 1.62e-46 168
Msa1093430 AT3G02100.1 28.257 499 281 17 9 485 13 456 1.71e-46 169
Msa1093430 AT4G01070.1 28.370 497 292 14 9 483 8 462 1.80e-46 169
Msa1093430 AT2G31750.2 29.423 503 284 17 7 490 6 456 3.25e-46 168
Msa1093430 AT1G05560.1 29.341 501 287 20 9 492 5 455 5.52e-46 167
Msa1093430 AT2G29750.1 27.921 505 310 16 4 489 5 474 6.75e-46 167
Msa1093430 AT1G05560.2 29.341 501 287 20 9 492 55 505 8.93e-46 167
Msa1093430 AT5G05860.1 27.926 487 300 14 8 489 8 448 1.19e-45 166
Msa1093430 AT3G16520.3 33.333 279 149 7 217 487 209 458 2.32e-45 165
Msa1093430 AT4G15280.1 29.746 511 295 20 7 490 2 475 2.64e-45 166
Msa1093430 AT4G15280.2 29.767 514 297 20 4 490 31 507 3.72e-45 166
Msa1093430 AT4G14090.1 29.243 489 289 18 9 487 13 454 2.55e-44 162
Msa1093430 AT1G24100.1 29.259 499 301 17 1 488 1 458 3.07e-44 162
Msa1093430 AT1G07260.1 32.000 375 221 13 123 489 124 472 6.65e-44 162
Msa1093430 AT4G15260.1 36.749 283 148 8 219 490 94 356 1.19e-43 158
Msa1093430 AT1G05530.1 25.703 498 306 15 9 489 5 455 1.41e-43 160
Msa1093430 AT1G01390.1 31.090 431 242 15 9 416 8 406 1.57e-43 160
Msa1093430 AT2G30140.1 27.383 493 291 18 9 488 13 451 1.65e-43 160
Msa1093430 AT1G22370.2 28.911 505 308 19 2 489 6 476 1.96e-43 160
Msa1093430 AT1G01390.2 31.090 431 242 15 9 416 25 423 2.13e-43 160
Msa1093430 AT2G30140.2 27.236 492 292 17 9 488 13 450 2.60e-43 159
Msa1093430 AT2G31790.1 26.389 504 300 18 2 485 1 453 5.52e-43 159
Msa1093430 AT1G07240.1 31.148 366 216 13 135 489 136 476 6.42e-43 159
Msa1093430 AT5G05870.1 27.699 491 296 16 11 488 10 454 6.85e-43 159
Msa1093430 AT1G22340.1 26.640 503 328 14 1 488 5 481 1.28e-42 158
Msa1093430 AT5G05880.1 27.530 494 293 18 8 488 7 448 5.65e-42 156
Msa1093430 AT3G16520.2 32.955 264 143 7 217 472 209 446 9.17e-42 155
Msa1093430 AT3G16520.1 37.981 208 106 5 217 416 209 401 1.37e-41 155
Msa1093430 AT2G18570.1 26.477 491 307 15 9 481 5 459 3.12e-41 154
Msa1093430 AT2G43840.2 26.327 490 307 15 9 491 7 449 5.88e-41 153
Msa1093430 AT2G43840.1 26.327 490 307 15 9 491 7 449 6.76e-41 153
Msa1093430 AT3G21780.1 27.519 516 295 16 7 490 2 470 1.21e-40 153
Msa1093430 AT2G23260.1 27.347 490 312 13 3 488 4 453 7.45e-40 150
Msa1093430 AT3G21790.1 35.274 292 153 11 219 497 216 484 1.48e-39 150
Msa1093430 AT5G59590.1 25.845 503 297 15 4 488 5 449 1.55e-39 149
Msa1093430 AT5G59580.1 26.423 492 301 15 7 488 7 447 1.56e-39 149
Msa1093430 AT4G15480.1 27.075 506 314 19 8 494 18 487 1.66e-39 150
Msa1093430 AT4G15490.1 26.877 506 303 20 9 491 8 469 3.57e-39 149
Msa1093430 AT2G36970.1 25.591 508 313 16 7 491 8 473 3.60e-39 149
Msa1093430 AT5G26310.1 26.172 512 285 19 7 481 5 460 4.68e-39 148
Msa1093430 AT3G50740.1 25.875 514 292 18 7 482 5 467 6.19e-39 148
Msa1093430 AT5G66690.1 26.706 513 281 21 7 481 5 460 8.93e-39 147
Msa1093430 AT5G49690.1 28.172 465 273 15 8 458 9 426 4.66e-38 145
Msa1093430 AT1G05675.1 26.978 493 295 17 9 485 6 449 7.96e-38 144
Msa1093430 AT3G55700.1 27.291 502 284 20 11 490 10 452 2.81e-37 143
Msa1093430 AT2G23250.1 29.079 478 283 19 18 488 7 435 4.56e-37 142
Msa1093430 AT2G18560.1 33.453 278 149 7 217 481 115 369 4.89e-37 140
Msa1093430 AT1G05680.1 26.531 490 301 14 9 485 6 449 5.92e-37 142
Msa1093430 AT5G05900.1 26.477 491 301 14 8 488 7 447 1.20e-36 141
Msa1093430 AT3G46670.1 25.767 489 297 17 11 486 11 446 1.21e-36 141
Msa1093430 AT5G65550.1 28.090 445 252 16 1 421 1 401 1.46e-36 141
Msa1093430 AT4G36770.1 26.772 508 288 17 7 482 2 457 3.89e-36 140
Msa1093430 AT5G05890.1 26.535 505 302 16 8 499 7 455 8.49e-36 139
Msa1093430 AT3G21750.1 25.490 510 311 17 7 489 2 469 9.42e-36 139
Msa1093430 AT2G16890.4 30.312 320 193 12 9 317 9 309 1.18e-34 132
Msa1093430 AT2G16890.1 30.312 320 193 12 9 317 9 309 1.18e-34 132
Msa1093430 AT3G21560.1 26.931 505 310 21 6 491 11 475 1.42e-34 136
Msa1093430 AT5G17050.1 26.176 489 304 17 3 481 8 449 2.59e-34 135
Msa1093430 AT5G17030.1 30.403 273 159 6 217 489 215 456 3.32e-34 134
Msa1093430 AT3G46660.1 27.126 494 290 19 11 488 16 455 3.65e-34 134
Msa1093430 AT5G17040.2 31.599 269 153 6 222 490 102 339 6.31e-34 131
Msa1093430 AT5G17040.1 31.599 269 153 6 222 490 204 441 2.14e-33 132
Msa1093430 AT3G46650.1 24.744 489 293 16 5 484 6 428 2.86e-33 131
Msa1093430 AT4G15500.1 26.087 506 312 20 1 489 3 463 4.07e-33 132
Msa1093430 AT2G28080.1 27.416 507 284 21 14 491 23 474 1.76e-32 130
Msa1093430 AT3G46690.1 24.949 493 291 16 7 479 7 440 4.30e-32 128
Msa1093430 AT3G46680.1 25.153 489 307 17 1 479 1 440 4.46e-32 128
Msa1093430 AT5G38010.1 25.686 510 293 17 4 488 5 453 5.39e-32 128
Msa1093430 AT3G22250.1 27.221 529 272 27 2 488 3 460 2.79e-31 126
Msa1093430 AT1G22370.1 32.234 273 163 8 219 489 54 306 2.88e-31 123
Msa1093430 AT3G46700.1 24.540 489 289 16 7 477 7 433 6.32e-31 125
Msa1093430 AT3G55710.1 27.143 420 260 15 11 416 10 397 2.97e-30 123
Msa1093430 AT1G30530.1 25.051 495 299 17 10 490 16 452 6.83e-30 122
Msa1093430 AT3G46720.1 25.963 493 277 19 7 479 7 431 1.19e-29 121
Msa1093430 AT2G26480.1 24.696 494 304 13 11 491 10 448 1.56e-29 121
Msa1093430 AT2G15490.2 33.505 194 109 6 7 188 5 190 9.29e-28 112
Msa1093430 AT1G64910.1 24.444 450 285 13 8 452 5 404 1.53e-27 115
Msa1093430 AT5G38040.1 32.258 217 116 6 279 488 257 449 9.27e-27 113
Msa1093430 AT4G27570.1 25.000 444 289 13 7 442 5 412 1.79e-25 109
Msa1093430 AT3G29630.1 24.832 447 292 13 7 452 4 407 1.63e-24 106
Msa1093430 AT4G27560.1 25.000 444 289 14 7 442 5 412 3.60e-24 105
Msa1093430 AT5G53990.1 23.503 451 288 13 8 452 5 404 4.58e-22 99.4
Msa1093430 AT2G22590.1 32.990 194 118 4 271 463 263 445 1.36e-21 98.2
Msa1093430 AT1G50580.1 24.009 454 299 13 7 459 4 412 2.13e-21 97.4
Msa1093430 AT5G54010.1 23.965 459 304 14 7 461 4 421 3.04e-21 96.7
Msa1093430 AT1G64920.1 24.353 464 288 15 7 459 4 415 3.28e-20 93.6
Msa1093430 AT4G09500.2 23.789 454 289 14 5 452 2 404 1.07e-19 92.0
Msa1093430 AT3G29630.2 32.787 183 111 3 270 452 211 381 2.35e-19 90.9
Msa1093430 AT5G37950.2 26.936 297 176 10 103 391 74 337 7.65e-19 88.2
Msa1093430 AT5G54060.1 24.279 416 266 13 8 407 12 394 9.10e-19 89.4
Msa1093430 AT4G09500.1 23.778 450 269 15 5 452 2 379 2.81e-18 87.4
Msa1093430 AT5G37950.1 31.285 179 99 5 219 391 183 343 1.62e-17 84.3
Msa1093430 AT2G22930.1 22.907 454 293 13 5 452 2 404 1.86e-16 82.0
Msa1093430 AT4G01070.2 27.052 329 197 11 9 325 8 305 6.96e-16 79.3

Find 88 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAATGTTGGTGTGAAAAT+TGG 0.221494 7_3:-13352240 Msa1093430:CDS
TGGTAGAAGCCTAGTGATTA+AGG 0.253870 7_3:-13352427 Msa1093430:CDS
ACTCCAAGAAAAGAAATTCT+TGG 0.289078 7_3:+13353044 None:intergenic
AATTAGGGAGCTTGGTAAAA+TGG 0.291320 7_3:-13352091 Msa1093430:CDS
AACAACACAAAGTGTAGTTT+TGG 0.293786 7_3:+13353452 None:intergenic
AACAGGACTAGGAGAATTAA+AGG 0.318916 7_3:-13352892 Msa1093430:CDS
TTCTTTATTAGCCATGATTT+CGG 0.324496 7_3:+13352971 None:intergenic
TCTCTTAAAACCCAAATAAA+AGG 0.326741 7_3:+13352513 None:intergenic
GCTTGGTAAAATGGCTAAAA+AGG 0.328408 7_3:-13352082 Msa1093430:CDS
TAAATGTTGGTGTGAAAATT+GGG 0.334829 7_3:-13352239 Msa1093430:CDS
CTAGCTACATGAAATGTATA+TGG 0.338578 7_3:+13353080 None:intergenic
GTAGCACGTTATGTTGAATA+TGG 0.338975 7_3:-13353305 Msa1093430:CDS
AATGATAAAGTTTGGTGTAT+TGG 0.348119 7_3:-13352747 Msa1093430:CDS
AGGTAATAATAATATTAATA+AGG 0.349413 7_3:-13352679 Msa1093430:CDS
TCTTCCTCACCCCATTTCAT+AGG 0.349665 7_3:+13352207 None:intergenic
AAGAGGAATAGAAATGTTAA+TGG 0.353560 7_3:-13352148 Msa1093430:CDS
ACTTAGTAACACGGATTACT+TGG 0.359179 7_3:-13352715 Msa1093430:CDS
ATATGCAAGGGATTATAAAA+AGG 0.364687 7_3:-13352775 Msa1093430:CDS
AGAGCTTGGTTTAGCATTAG+AGG 0.368487 7_3:-13352547 Msa1093430:CDS
TCAAGATTCTCACACCCTTC+TGG 0.375312 7_3:+13353230 None:intergenic
CTTTGTGTTGTTTCCAATGA+TGG 0.396641 7_3:-13353441 Msa1093430:CDS
GAATTTCCATGTAAAGAGTC+TGG 0.397254 7_3:-13353257 Msa1093430:CDS
GAAGCTGAAACGGGTAGTTA+TGG 0.406971 7_3:-13352834 Msa1093430:CDS
GGGTGAAGAGTCCTATGAAA+TGG 0.408750 7_3:-13352218 Msa1093430:CDS
AGTGTTATCTATGCATGCTT+TGG 0.411358 7_3:-13352603 Msa1093430:CDS
GTTGTACAAATATTAAATGT+TGG 0.418685 7_3:-13352252 Msa1093430:CDS
AGGTAAGAAATGATAAAGTT+TGG 0.421595 7_3:-13352755 Msa1093430:CDS
ATATTGTCACATCAAGCAAT+TGG 0.426271 7_3:-13352384 Msa1093430:CDS
AAGCTGAAACGGGTAGTTAT+GGG 0.431787 7_3:-13352833 Msa1093430:CDS
TTATAATCCCTTGCATATGT+TGG 0.442755 7_3:+13352780 None:intergenic
CAATAATATGGCCGAAATCA+TGG 0.446915 7_3:-13352982 Msa1093430:CDS
GAGAATTAAAGGGCGAAGCT+TGG 0.449179 7_3:-13352881 Msa1093430:CDS
TAAGGATTCAAATGATGAAT+GGG 0.449668 7_3:-13352661 Msa1093430:CDS
CAATGCATTGAGGAAGTTTG+AGG 0.452176 7_3:+13353184 None:intergenic
ATAAGGATTCAAATGATGAA+TGG 0.460628 7_3:-13352662 Msa1093430:CDS
TCAGAGATGATACAAGTTGC+TGG 0.461033 7_3:+13353113 None:intergenic
AAGCCTAGTGATTAAGGGTT+GGG 0.467439 7_3:-13352421 Msa1093430:CDS
CTTTACATGGAAATTCAAGT+TGG 0.470893 7_3:+13353264 None:intergenic
TAACACGGATTACTTGGATA+AGG 0.475459 7_3:-13352709 Msa1093430:CDS
TCTGAATACTTTGAATTGCC+TGG 0.477717 7_3:-13352948 Msa1093430:CDS
GGATTTGAGGGAAGAATCAA+TGG 0.478326 7_3:-13352447 Msa1093430:CDS
GGTGAAGAGTCCTATGAAAT+GGG 0.478362 7_3:-13352217 Msa1093430:CDS
CCACCACAGTTGATAGAGCT+TGG 0.479609 7_3:-13352561 Msa1093430:CDS
GAAATGACAATAGCACAAAC+AGG 0.482540 7_3:-13352909 Msa1093430:CDS
GACTTGCTTGAAGCTGAAAC+GGG 0.486016 7_3:-13352843 Msa1093430:CDS
CTTGAGGTGAGTGGATTTGA+GGG 0.487333 7_3:-13352459 Msa1093430:CDS
ATGAATGGGATCACTTGAAA+TGG 0.487806 7_3:-13352647 Msa1093430:CDS
GGTAGAAGCCTAGTGATTAA+GGG 0.493102 7_3:-13352426 Msa1093430:CDS
TGACTTGCTTGAAGCTGAAA+CGG 0.493725 7_3:-13352844 Msa1093430:CDS
AAGAAAGAAGATGTTGAAAG+AGG 0.498045 7_3:-13352165 Msa1093430:CDS
GCTTCTTAACACACTGCGGT+TGG 0.503265 7_3:-13352359 Msa1093430:CDS
CTGGTGTGCCAATGGTTACA+TGG 0.505452 7_3:-13352311 Msa1093430:CDS
GCTTGAGGTGAGTGGATTTG+AGG 0.505611 7_3:-13352460 Msa1093430:CDS
ATGTGGCCTTGTGCCATCAT+TGG 0.505701 7_3:+13353428 None:intergenic
TTTGAGGCCGTGCCAAGTGC+AGG 0.506509 7_3:+13353200 None:intergenic
TCCGTGTTACTAAGTGATAC+AGG 0.506827 7_3:+13352723 None:intergenic
CTTGACATGCTACCTGCACT+TGG 0.511668 7_3:-13353212 Msa1093430:CDS
GGTAATCCAGACTCTTTACA+TGG 0.514181 7_3:+13353251 None:intergenic
AATTATGCATATTGAAGAGA+TGG 0.518442 7_3:+13353012 None:intergenic
ACTCTAGAAGCAATATGTGC+TGG 0.546599 7_3:-13352330 Msa1093430:CDS
TTGTCACATCAAGCAATTGG+AGG 0.555966 7_3:-13352381 Msa1093430:CDS
GAAGCCTAGTGATTAAGGGT+TGG 0.559858 7_3:-13352422 Msa1093430:CDS
AAAAGTGGCCATGTAACCAT+TGG 0.565009 7_3:+13352303 None:intergenic
GAGCCCAACCCTTAATCACT+AGG 0.571445 7_3:+13352418 None:intergenic
ACAATAGCACAAACAGGACT+AGG 0.572414 7_3:-13352903 Msa1093430:CDS
ACAGGACTAGGAGAATTAAA+GGG 0.574718 7_3:-13352891 Msa1093430:CDS
CATGCTACCTGCACTTGGCA+CGG 0.575682 7_3:-13353207 Msa1093430:CDS
TGGCTTGATTCTCAGAAACA+AGG 0.577535 7_3:-13352627 Msa1093430:CDS
GGAGAAACTTCAATGCATTG+AGG 0.579276 7_3:+13353174 None:intergenic
AGGCCACATGATCCCCATGA+TGG 0.587737 7_3:-13353414 Msa1093430:CDS
GGAAGAAGAAAGTGACGTGT+TGG 0.587928 7_3:-13352190 Msa1093430:CDS
GAGTCCTATGAAATGGGGTG+AGG 0.588467 7_3:-13352211 Msa1093430:CDS
AAAGAGTCTGGATTACCAGA+AGG 0.592502 7_3:-13353245 Msa1093430:CDS
AGTTAGAGCCAACATATGCA+AGG 0.605309 7_3:-13352788 Msa1093430:CDS
TGTCCATCATGGGGATCATG+TGG 0.608604 7_3:+13353411 None:intergenic
TCCTGTATCACTTAGTAACA+CGG 0.612903 7_3:-13352724 Msa1093430:CDS
AAGAGTCTGGATTACCAGAA+GGG 0.616408 7_3:-13353244 Msa1093430:CDS
AAATGTTGGTGTGAAAATTG+GGG 0.617684 7_3:-13352238 Msa1093430:CDS
GGCTTGATTCTCAGAAACAA+GGG 0.618577 7_3:-13352626 Msa1093430:CDS
GTTAGAGCCAACATATGCAA+GGG 0.628142 7_3:-13352787 Msa1093430:CDS
TACTTGGATAAGGTTCAAAG+AGG 0.628427 7_3:-13352699 Msa1093430:CDS
CCAAGCTCTATCAACTGTGG+TGG 0.630706 7_3:+13352561 None:intergenic
AATATGTGCTGGTGTGCCAA+TGG 0.637264 7_3:-13352319 Msa1093430:CDS
TTGTTTCCAATGATGGCACA+AGG 0.685173 7_3:-13353434 Msa1093430:CDS
GGAGGCTTCTTAACACACTG+CGG 0.693423 7_3:-13352363 Msa1093430:CDS
TGTGACAATATCAATAACTG+AGG 0.695207 7_3:+13352396 None:intergenic
GTGAAGAGTCCTATGAAATG+GGG 0.698046 7_3:-13352216 Msa1093430:CDS
AAACCAAGCTCTATCAACTG+TGG 0.705010 7_3:+13352558 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGGTAATAATAATATTAATA+AGG - chr7_3:13352754-13352773 Msa1093430:CDS 10.0%
!! AGGTAATAATAATATTAATA+AGG - chr7_3:13352754-13352773 Msa1093430:CDS 10.0%
!!! TAATTTTCATGTCAATAATA+TGG - chr7_3:13352439-13352458 Msa1093430:CDS 15.0%
!!! TAATTTTCATGTCAATAATA+TGG - chr7_3:13352439-13352458 Msa1093430:CDS 15.0%
!!! AACAAAAAGACCTTTTATTT+GGG - chr7_3:13352910-13352929 Msa1093430:CDS 20.0%
!! CTAAACATTCATTCAAAAAT+TGG + chr7_3:13353162-13353181 None:intergenic 20.0%
!! GTTGTACAAATATTAAATGT+TGG - chr7_3:13353181-13353200 Msa1093430:CDS 20.0%
!! AAGAAAGAAGAAAAAGAATT+AGG - chr7_3:13353326-13353345 Msa1093430:CDS 20.0%
!! AGAAAGAAGAAAAAGAATTA+GGG - chr7_3:13353327-13353346 Msa1093430:CDS 20.0%
!!! TTTTGAATTGGTATTTTCAT+TGG + chr7_3:13353467-13353486 None:intergenic 20.0%
!!! AACAAAAAGACCTTTTATTT+GGG - chr7_3:13352910-13352929 Msa1093430:CDS 20.0%
!! CTAAACATTCATTCAAAAAT+TGG + chr7_3:13353162-13353181 None:intergenic 20.0%
!! GTTGTACAAATATTAAATGT+TGG - chr7_3:13353181-13353200 Msa1093430:CDS 20.0%
!! AAGAAAGAAGAAAAAGAATT+AGG - chr7_3:13353326-13353345 Msa1093430:CDS 20.0%
!! AGAAAGAAGAAAAAGAATTA+GGG - chr7_3:13353327-13353346 Msa1093430:CDS 20.0%
!!! TTTTGAATTGGTATTTTCAT+TGG + chr7_3:13353467-13353486 None:intergenic 20.0%
!! ATTCCAAGAATTTCTTTTCT+TGG - chr7_3:13352386-13352405 Msa1093430:CDS 25.0%
! AATTATGCATATTGAAGAGA+TGG + chr7_3:13352424-13352443 None:intergenic 25.0%
! TTCTTTATTAGCCATGATTT+CGG + chr7_3:13352465-13352484 None:intergenic 25.0%
!!! TTGTCATTTCAATTTTGTCA+GGG + chr7_3:13352514-13352533 None:intergenic 25.0%
!!! ATTGTCATTTCAATTTTGTC+AGG + chr7_3:13352515-13352534 None:intergenic 25.0%
! ATATGCAAGGGATTATAAAA+AGG - chr7_3:13352658-13352677 Msa1093430:CDS 25.0%
! AGGTAAGAAATGATAAAGTT+TGG - chr7_3:13352678-13352697 Msa1093430:CDS 25.0%
!!! AATGATAAAGTTTGGTGTAT+TGG - chr7_3:13352686-13352705 Msa1093430:CDS 25.0%
! ATAAGGATTCAAATGATGAA+TGG - chr7_3:13352771-13352790 Msa1093430:CDS 25.0%
! TAAGGATTCAAATGATGAAT+GGG - chr7_3:13352772-13352791 Msa1093430:CDS 25.0%
!! CAACAAAAAGACCTTTTATT+TGG - chr7_3:13352909-13352928 Msa1093430:CDS 25.0%
! TCTCTTAAAACCCAAATAAA+AGG + chr7_3:13352923-13352942 None:intergenic 25.0%
!!! TTTTATTTGGGTTTTAAGAG+AGG - chr7_3:13352922-13352941 Msa1093430:CDS 25.0%
!!! TTTATTTGGGTTTTAAGAGA+GGG - chr7_3:13352923-13352942 Msa1093430:CDS 25.0%
! AGTTAGAAGAGTTGAAAAAA+TGG - chr7_3:13352951-13352970 Msa1093430:CDS 25.0%
! TTAAATGTTGGTGTGAAAAT+TGG - chr7_3:13353193-13353212 Msa1093430:CDS 25.0%
! TAAATGTTGGTGTGAAAATT+GGG - chr7_3:13353194-13353213 Msa1093430:CDS 25.0%
! AAGAGGAATAGAAATGTTAA+TGG - chr7_3:13353285-13353304 Msa1093430:CDS 25.0%
!!! TACTTTTTTGCATGATATCT+TGG + chr7_3:13353423-13353442 None:intergenic 25.0%
! AGATATCATGCAAAAAAGTA+AGG - chr7_3:13353423-13353442 Msa1093430:CDS 25.0%
!! ATTCCAAGAATTTCTTTTCT+TGG - chr7_3:13352386-13352405 Msa1093430:CDS 25.0%
! AATTATGCATATTGAAGAGA+TGG + chr7_3:13352424-13352443 None:intergenic 25.0%
! TTCTTTATTAGCCATGATTT+CGG + chr7_3:13352465-13352484 None:intergenic 25.0%
!!! TTGTCATTTCAATTTTGTCA+GGG + chr7_3:13352514-13352533 None:intergenic 25.0%
!!! ATTGTCATTTCAATTTTGTC+AGG + chr7_3:13352515-13352534 None:intergenic 25.0%
! ATATGCAAGGGATTATAAAA+AGG - chr7_3:13352658-13352677 Msa1093430:CDS 25.0%
! AGGTAAGAAATGATAAAGTT+TGG - chr7_3:13352678-13352697 Msa1093430:CDS 25.0%
!!! AATGATAAAGTTTGGTGTAT+TGG - chr7_3:13352686-13352705 Msa1093430:CDS 25.0%
! ATAAGGATTCAAATGATGAA+TGG - chr7_3:13352771-13352790 Msa1093430:CDS 25.0%
! TAAGGATTCAAATGATGAAT+GGG - chr7_3:13352772-13352791 Msa1093430:CDS 25.0%
!! CAACAAAAAGACCTTTTATT+TGG - chr7_3:13352909-13352928 Msa1093430:CDS 25.0%
! TCTCTTAAAACCCAAATAAA+AGG + chr7_3:13352923-13352942 None:intergenic 25.0%
!!! TTTTATTTGGGTTTTAAGAG+AGG - chr7_3:13352922-13352941 Msa1093430:CDS 25.0%
!!! TTTATTTGGGTTTTAAGAGA+GGG - chr7_3:13352923-13352942 Msa1093430:CDS 25.0%
! AGTTAGAAGAGTTGAAAAAA+TGG - chr7_3:13352951-13352970 Msa1093430:CDS 25.0%
! TTAAATGTTGGTGTGAAAAT+TGG - chr7_3:13353193-13353212 Msa1093430:CDS 25.0%
! TAAATGTTGGTGTGAAAATT+GGG - chr7_3:13353194-13353213 Msa1093430:CDS 25.0%
! AAGAGGAATAGAAATGTTAA+TGG - chr7_3:13353285-13353304 Msa1093430:CDS 25.0%
!!! TACTTTTTTGCATGATATCT+TGG + chr7_3:13353423-13353442 None:intergenic 25.0%
! AGATATCATGCAAAAAAGTA+AGG - chr7_3:13353423-13353442 Msa1093430:CDS 25.0%
! ACAACACAAAGTGTAGTTTT+GGG + chr7_3:13351983-13352002 None:intergenic 30.0%
! AACAACACAAAGTGTAGTTT+TGG + chr7_3:13351984-13352003 None:intergenic 30.0%
! ATTTTTGCAATGTCCATCAT+GGG + chr7_3:13352035-13352054 None:intergenic 30.0%
!! TATTTTTGCAATGTCCATCA+TGG + chr7_3:13352036-13352055 None:intergenic 30.0%
GATGGACATTGCAAAAATAT+TGG - chr7_3:13352037-13352056 Msa1093430:CDS 30.0%
!!! TGAAACGAGATGCATTTTTT+GGG + chr7_3:13352100-13352119 None:intergenic 30.0%
CTTTACATGGAAATTCAAGT+TGG + chr7_3:13352172-13352191 None:intergenic 30.0%
CTAGCTACATGAAATGTATA+TGG + chr7_3:13352356-13352375 None:intergenic 30.0%
ACTCCAAGAAAAGAAATTCT+TGG + chr7_3:13352392-13352411 None:intergenic 30.0%
TTATAATCCCTTGCATATGT+TGG + chr7_3:13352656-13352675 None:intergenic 30.0%
TGTGACAATATCAATAACTG+AGG + chr7_3:13353040-13353059 None:intergenic 30.0%
ATATTGTCACATCAAGCAAT+TGG - chr7_3:13353049-13353068 Msa1093430:CDS 30.0%
AAATGTTGGTGTGAAAATTG+GGG - chr7_3:13353195-13353214 Msa1093430:CDS 30.0%
AAGAAAGAAGATGTTGAAAG+AGG - chr7_3:13353268-13353287 Msa1093430:CDS 30.0%
CATGCAAAAAAGTAAGGATA+TGG - chr7_3:13353429-13353448 Msa1093430:CDS 30.0%
! ACAACACAAAGTGTAGTTTT+GGG + chr7_3:13351983-13352002 None:intergenic 30.0%
! AACAACACAAAGTGTAGTTT+TGG + chr7_3:13351984-13352003 None:intergenic 30.0%
! ATTTTTGCAATGTCCATCAT+GGG + chr7_3:13352035-13352054 None:intergenic 30.0%
!! TATTTTTGCAATGTCCATCA+TGG + chr7_3:13352036-13352055 None:intergenic 30.0%
GATGGACATTGCAAAAATAT+TGG - chr7_3:13352037-13352056 Msa1093430:CDS 30.0%
!!! TGAAACGAGATGCATTTTTT+GGG + chr7_3:13352100-13352119 None:intergenic 30.0%
CTTTACATGGAAATTCAAGT+TGG + chr7_3:13352172-13352191 None:intergenic 30.0%
CTAGCTACATGAAATGTATA+TGG + chr7_3:13352356-13352375 None:intergenic 30.0%
ACTCCAAGAAAAGAAATTCT+TGG + chr7_3:13352392-13352411 None:intergenic 30.0%
TTATAATCCCTTGCATATGT+TGG + chr7_3:13352656-13352675 None:intergenic 30.0%
TGTGACAATATCAATAACTG+AGG + chr7_3:13353040-13353059 None:intergenic 30.0%
ATATTGTCACATCAAGCAAT+TGG - chr7_3:13353049-13353068 Msa1093430:CDS 30.0%
AAATGTTGGTGTGAAAATTG+GGG - chr7_3:13353195-13353214 Msa1093430:CDS 30.0%
AAGAAAGAAGATGTTGAAAG+AGG - chr7_3:13353268-13353287 Msa1093430:CDS 30.0%
CATGCAAAAAAGTAAGGATA+TGG - chr7_3:13353429-13353448 Msa1093430:CDS 30.0%
!!! AAAGTGTAGTTTTGGGTCTT+GGG + chr7_3:13351976-13351995 None:intergenic 35.0%
!! CTTTGTGTTGTTTCCAATGA+TGG - chr7_3:13351992-13352011 Msa1093430:CDS 35.0%
! TTTTTGCAATGTCCATCATG+GGG + chr7_3:13352034-13352053 None:intergenic 35.0%
!!! GAAACGAGATGCATTTTTTG+GGG + chr7_3:13352099-13352118 None:intergenic 35.0%
!!! GTGAAACGAGATGCATTTTT+TGG + chr7_3:13352101-13352120 None:intergenic 35.0%
GTAGCACGTTATGTTGAATA+TGG - chr7_3:13352128-13352147 Msa1093430:CDS 35.0%
GAATTTCCATGTAAAGAGTC+TGG - chr7_3:13352176-13352195 Msa1093430:CDS 35.0%
! ACAGCTTTTCAACTTCTTGT+TGG + chr7_3:13352283-13352302 None:intergenic 35.0%
CAATAATATGGCCGAAATCA+TGG - chr7_3:13352451-13352470 Msa1093430:CDS 35.0%
TCTGAATACTTTGAATTGCC+TGG - chr7_3:13352485-13352504 Msa1093430:CDS 35.0%
GAAATGACAATAGCACAAAC+AGG - chr7_3:13352524-13352543 Msa1093430:CDS 35.0%
AACAGGACTAGGAGAATTAA+AGG - chr7_3:13352541-13352560 Msa1093430:CDS 35.0%
ACAGGACTAGGAGAATTAAA+GGG - chr7_3:13352542-13352561 Msa1093430:CDS 35.0%
TCCTGTATCACTTAGTAACA+CGG - chr7_3:13352709-13352728 Msa1093430:CDS 35.0%
! ACTTAGTAACACGGATTACT+TGG - chr7_3:13352718-13352737 Msa1093430:CDS 35.0%
! TAACACGGATTACTTGGATA+AGG - chr7_3:13352724-13352743 Msa1093430:CDS 35.0%
TACTTGGATAAGGTTCAAAG+AGG - chr7_3:13352734-13352753 Msa1093430:CDS 35.0%
ATGAATGGGATCACTTGAAA+TGG - chr7_3:13352786-13352805 Msa1093430:CDS 35.0%
AGTGTTATCTATGCATGCTT+TGG - chr7_3:13352830-13352849 Msa1093430:CDS 35.0%
AGAGTTGAAAAAATGGCTTG+AGG - chr7_3:13352958-13352977 Msa1093430:CDS 35.0%
AAAAATTGGTCCGCAAAAAG+TGG + chr7_3:13353148-13353167 None:intergenic 35.0%
AGAAAAAGAATTAGGGAGCT+TGG - chr7_3:13353334-13353353 Msa1093430:CDS 35.0%
AATTAGGGAGCTTGGTAAAA+TGG - chr7_3:13353342-13353361 Msa1093430:CDS 35.0%
GCTTGGTAAAATGGCTAAAA+AGG - chr7_3:13353351-13353370 Msa1093430:CDS 35.0%
CTAAAAAGGCTGTAGAAAGA+GGG - chr7_3:13353365-13353384 Msa1093430:CDS 35.0%
TAAAAAGGCTGTAGAAAGAG+GGG - chr7_3:13353366-13353385 Msa1093430:CDS 35.0%
!!! AAAGTGTAGTTTTGGGTCTT+GGG + chr7_3:13351976-13351995 None:intergenic 35.0%
!! CTTTGTGTTGTTTCCAATGA+TGG - chr7_3:13351992-13352011 Msa1093430:CDS 35.0%
! TTTTTGCAATGTCCATCATG+GGG + chr7_3:13352034-13352053 None:intergenic 35.0%
!!! GAAACGAGATGCATTTTTTG+GGG + chr7_3:13352099-13352118 None:intergenic 35.0%
!!! GTGAAACGAGATGCATTTTT+TGG + chr7_3:13352101-13352120 None:intergenic 35.0%
GTAGCACGTTATGTTGAATA+TGG - chr7_3:13352128-13352147 Msa1093430:CDS 35.0%
GAATTTCCATGTAAAGAGTC+TGG - chr7_3:13352176-13352195 Msa1093430:CDS 35.0%
! ACAGCTTTTCAACTTCTTGT+TGG + chr7_3:13352283-13352302 None:intergenic 35.0%
CAATAATATGGCCGAAATCA+TGG - chr7_3:13352451-13352470 Msa1093430:CDS 35.0%
TCTGAATACTTTGAATTGCC+TGG - chr7_3:13352485-13352504 Msa1093430:CDS 35.0%
GAAATGACAATAGCACAAAC+AGG - chr7_3:13352524-13352543 Msa1093430:CDS 35.0%
AACAGGACTAGGAGAATTAA+AGG - chr7_3:13352541-13352560 Msa1093430:CDS 35.0%
ACAGGACTAGGAGAATTAAA+GGG - chr7_3:13352542-13352561 Msa1093430:CDS 35.0%
TCCTGTATCACTTAGTAACA+CGG - chr7_3:13352709-13352728 Msa1093430:CDS 35.0%
! ACTTAGTAACACGGATTACT+TGG - chr7_3:13352718-13352737 Msa1093430:CDS 35.0%
! TAACACGGATTACTTGGATA+AGG - chr7_3:13352724-13352743 Msa1093430:CDS 35.0%
TACTTGGATAAGGTTCAAAG+AGG - chr7_3:13352734-13352753 Msa1093430:CDS 35.0%
ATGAATGGGATCACTTGAAA+TGG - chr7_3:13352786-13352805 Msa1093430:CDS 35.0%
AGTGTTATCTATGCATGCTT+TGG - chr7_3:13352830-13352849 Msa1093430:CDS 35.0%
AGAGTTGAAAAAATGGCTTG+AGG - chr7_3:13352958-13352977 Msa1093430:CDS 35.0%
AAAAATTGGTCCGCAAAAAG+TGG + chr7_3:13353148-13353167 None:intergenic 35.0%
AGAAAAAGAATTAGGGAGCT+TGG - chr7_3:13353334-13353353 Msa1093430:CDS 35.0%
AATTAGGGAGCTTGGTAAAA+TGG - chr7_3:13353342-13353361 Msa1093430:CDS 35.0%
GCTTGGTAAAATGGCTAAAA+AGG - chr7_3:13353351-13353370 Msa1093430:CDS 35.0%
CTAAAAAGGCTGTAGAAAGA+GGG - chr7_3:13353365-13353384 Msa1093430:CDS 35.0%
TAAAAAGGCTGTAGAAAGAG+GGG - chr7_3:13353366-13353385 Msa1093430:CDS 35.0%
!!! CAAAGTGTAGTTTTGGGTCT+TGG + chr7_3:13351977-13351996 None:intergenic 40.0%
TTGTTTCCAATGATGGCACA+AGG - chr7_3:13351999-13352018 Msa1093430:CDS 40.0%
GGTAATCCAGACTCTTTACA+TGG + chr7_3:13352185-13352204 None:intergenic 40.0%
AAAGAGTCTGGATTACCAGA+AGG - chr7_3:13352188-13352207 Msa1093430:CDS 40.0%
AAGAGTCTGGATTACCAGAA+GGG - chr7_3:13352189-13352208 Msa1093430:CDS 40.0%
CAATGCATTGAGGAAGTTTG+AGG + chr7_3:13352252-13352271 None:intergenic 40.0%
GGAGAAACTTCAATGCATTG+AGG + chr7_3:13352262-13352281 None:intergenic 40.0%
TCAGAGATGATACAAGTTGC+TGG + chr7_3:13352323-13352342 None:intergenic 40.0%
! TCAATTTTGTCAGGGATACC+AGG + chr7_3:13352506-13352525 None:intergenic 40.0%
ACAATAGCACAAACAGGACT+AGG - chr7_3:13352530-13352549 Msa1093430:CDS 40.0%
!! TGACTTGCTTGAAGCTGAAA+CGG - chr7_3:13352589-13352608 Msa1093430:CDS 40.0%
AAGCTGAAACGGGTAGTTAT+GGG - chr7_3:13352600-13352619 Msa1093430:CDS 40.0%
AGTTAGAGCCAACATATGCA+AGG - chr7_3:13352645-13352664 Msa1093430:CDS 40.0%
GTTAGAGCCAACATATGCAA+GGG - chr7_3:13352646-13352665 Msa1093430:CDS 40.0%
! TCCGTGTTACTAAGTGATAC+AGG + chr7_3:13352713-13352732 None:intergenic 40.0%
TGGCTTGATTCTCAGAAACA+AGG - chr7_3:13352806-13352825 Msa1093430:CDS 40.0%
GGCTTGATTCTCAGAAACAA+GGG - chr7_3:13352807-13352826 Msa1093430:CDS 40.0%
AAACCAAGCTCTATCAACTG+TGG + chr7_3:13352878-13352897 None:intergenic 40.0%
AGAGCTTGGTTTAGCATTAG+AGG - chr7_3:13352886-13352905 Msa1093430:CDS 40.0%
AAAAAATGGCTTGAGGTGAG+TGG - chr7_3:13352965-13352984 Msa1093430:CDS 40.0%
GGATTTGAGGGAAGAATCAA+TGG - chr7_3:13352986-13353005 Msa1093430:CDS 40.0%
TGGTAGAAGCCTAGTGATTA+AGG - chr7_3:13353006-13353025 Msa1093430:CDS 40.0%
GGTAGAAGCCTAGTGATTAA+GGG - chr7_3:13353007-13353026 Msa1093430:CDS 40.0%
AAGCCTAGTGATTAAGGGTT+GGG - chr7_3:13353012-13353031 Msa1093430:CDS 40.0%
TTGTCACATCAAGCAATTGG+AGG - chr7_3:13353052-13353071 Msa1093430:CDS 40.0%
! ACTCTAGAAGCAATATGTGC+TGG - chr7_3:13353103-13353122 Msa1093430:CDS 40.0%
AAAAGTGGCCATGTAACCAT+TGG + chr7_3:13353133-13353152 None:intergenic 40.0%
GGTGAAGAGTCCTATGAAAT+GGG - chr7_3:13353216-13353235 Msa1093430:CDS 40.0%
GTGAAGAGTCCTATGAAATG+GGG - chr7_3:13353217-13353236 Msa1093430:CDS 40.0%
GCTAAAAAGGCTGTAGAAAG+AGG - chr7_3:13353364-13353383 Msa1093430:CDS 40.0%
AAAAAGGCTGTAGAAAGAGG+GGG - chr7_3:13353367-13353386 Msa1093430:CDS 40.0%
!!! CAAAGTGTAGTTTTGGGTCT+TGG + chr7_3:13351977-13351996 None:intergenic 40.0%
TTGTTTCCAATGATGGCACA+AGG - chr7_3:13351999-13352018 Msa1093430:CDS 40.0%
GGTAATCCAGACTCTTTACA+TGG + chr7_3:13352185-13352204 None:intergenic 40.0%
AAAGAGTCTGGATTACCAGA+AGG - chr7_3:13352188-13352207 Msa1093430:CDS 40.0%
AAGAGTCTGGATTACCAGAA+GGG - chr7_3:13352189-13352208 Msa1093430:CDS 40.0%
CAATGCATTGAGGAAGTTTG+AGG + chr7_3:13352252-13352271 None:intergenic 40.0%
GGAGAAACTTCAATGCATTG+AGG + chr7_3:13352262-13352281 None:intergenic 40.0%
TCAGAGATGATACAAGTTGC+TGG + chr7_3:13352323-13352342 None:intergenic 40.0%
! TCAATTTTGTCAGGGATACC+AGG + chr7_3:13352506-13352525 None:intergenic 40.0%
ACAATAGCACAAACAGGACT+AGG - chr7_3:13352530-13352549 Msa1093430:CDS 40.0%
!! TGACTTGCTTGAAGCTGAAA+CGG - chr7_3:13352589-13352608 Msa1093430:CDS 40.0%
AAGCTGAAACGGGTAGTTAT+GGG - chr7_3:13352600-13352619 Msa1093430:CDS 40.0%
AGTTAGAGCCAACATATGCA+AGG - chr7_3:13352645-13352664 Msa1093430:CDS 40.0%
GTTAGAGCCAACATATGCAA+GGG - chr7_3:13352646-13352665 Msa1093430:CDS 40.0%
! TCCGTGTTACTAAGTGATAC+AGG + chr7_3:13352713-13352732 None:intergenic 40.0%
TGGCTTGATTCTCAGAAACA+AGG - chr7_3:13352806-13352825 Msa1093430:CDS 40.0%
GGCTTGATTCTCAGAAACAA+GGG - chr7_3:13352807-13352826 Msa1093430:CDS 40.0%
AAACCAAGCTCTATCAACTG+TGG + chr7_3:13352878-13352897 None:intergenic 40.0%
AGAGCTTGGTTTAGCATTAG+AGG - chr7_3:13352886-13352905 Msa1093430:CDS 40.0%
AAAAAATGGCTTGAGGTGAG+TGG - chr7_3:13352965-13352984 Msa1093430:CDS 40.0%
GGATTTGAGGGAAGAATCAA+TGG - chr7_3:13352986-13353005 Msa1093430:CDS 40.0%
TGGTAGAAGCCTAGTGATTA+AGG - chr7_3:13353006-13353025 Msa1093430:CDS 40.0%
GGTAGAAGCCTAGTGATTAA+GGG - chr7_3:13353007-13353026 Msa1093430:CDS 40.0%
AAGCCTAGTGATTAAGGGTT+GGG - chr7_3:13353012-13353031 Msa1093430:CDS 40.0%
TTGTCACATCAAGCAATTGG+AGG - chr7_3:13353052-13353071 Msa1093430:CDS 40.0%
! ACTCTAGAAGCAATATGTGC+TGG - chr7_3:13353103-13353122 Msa1093430:CDS 40.0%
AAAAGTGGCCATGTAACCAT+TGG + chr7_3:13353133-13353152 None:intergenic 40.0%
GGTGAAGAGTCCTATGAAAT+GGG - chr7_3:13353216-13353235 Msa1093430:CDS 40.0%
GTGAAGAGTCCTATGAAATG+GGG - chr7_3:13353217-13353236 Msa1093430:CDS 40.0%
GCTAAAAAGGCTGTAGAAAG+AGG - chr7_3:13353364-13353383 Msa1093430:CDS 40.0%
AAAAAGGCTGTAGAAAGAGG+GGG - chr7_3:13353367-13353386 Msa1093430:CDS 40.0%
!!! ACGAGATGCATTTTTTGGGG+TGG + chr7_3:13352096-13352115 None:intergenic 45.0%
TCAAGATTCTCACACCCTTC+TGG + chr7_3:13352206-13352225 None:intergenic 45.0%
GAGAATTAAAGGGCGAAGCT+TGG - chr7_3:13352552-13352571 Msa1093430:CDS 45.0%
! GACTTGCTTGAAGCTGAAAC+GGG - chr7_3:13352590-13352609 Msa1093430:CDS 45.0%
GAAGCTGAAACGGGTAGTTA+TGG - chr7_3:13352599-13352618 Msa1093430:CDS 45.0%
! CTTGAGGTGAGTGGATTTGA+GGG - chr7_3:13352974-13352993 Msa1093430:CDS 45.0%
GAAGCCTAGTGATTAAGGGT+TGG - chr7_3:13353011-13353030 Msa1093430:CDS 45.0%
! AATATGTGCTGGTGTGCCAA+TGG - chr7_3:13353114-13353133 Msa1093430:CDS 45.0%
!!! GGTTACATGGCCACTTTTTG+CGG - chr7_3:13353135-13353154 Msa1093430:CDS 45.0%
GGGTGAAGAGTCCTATGAAA+TGG - chr7_3:13353215-13353234 Msa1093430:CDS 45.0%
TCTTCCTCACCCCATTTCAT+AGG + chr7_3:13353229-13353248 None:intergenic 45.0%
GGAAGAAGAAAGTGACGTGT+TGG - chr7_3:13353243-13353262 Msa1093430:CDS 45.0%
!!! ACGAGATGCATTTTTTGGGG+TGG + chr7_3:13352096-13352115 None:intergenic 45.0%
TCAAGATTCTCACACCCTTC+TGG + chr7_3:13352206-13352225 None:intergenic 45.0%
GAGAATTAAAGGGCGAAGCT+TGG - chr7_3:13352552-13352571 Msa1093430:CDS 45.0%
! GACTTGCTTGAAGCTGAAAC+GGG - chr7_3:13352590-13352609 Msa1093430:CDS 45.0%
GAAGCTGAAACGGGTAGTTA+TGG - chr7_3:13352599-13352618 Msa1093430:CDS 45.0%
! CTTGAGGTGAGTGGATTTGA+GGG - chr7_3:13352974-13352993 Msa1093430:CDS 45.0%
GAAGCCTAGTGATTAAGGGT+TGG - chr7_3:13353011-13353030 Msa1093430:CDS 45.0%
! AATATGTGCTGGTGTGCCAA+TGG - chr7_3:13353114-13353133 Msa1093430:CDS 45.0%
!!! GGTTACATGGCCACTTTTTG+CGG - chr7_3:13353135-13353154 Msa1093430:CDS 45.0%
GGGTGAAGAGTCCTATGAAA+TGG - chr7_3:13353215-13353234 Msa1093430:CDS 45.0%
TCTTCCTCACCCCATTTCAT+AGG + chr7_3:13353229-13353248 None:intergenic 45.0%
GGAAGAAGAAAGTGACGTGT+TGG - chr7_3:13353243-13353262 Msa1093430:CDS 45.0%
!! ATGTGGCCTTGTGCCATCAT+TGG + chr7_3:13352008-13352027 None:intergenic 50.0%
TGTCCATCATGGGGATCATG+TGG + chr7_3:13352025-13352044 None:intergenic 50.0%
CTTGACATGCTACCTGCACT+TGG - chr7_3:13352221-13352240 Msa1093430:CDS 50.0%
CCAAGCTCTATCAACTGTGG+TGG + chr7_3:13352875-13352894 None:intergenic 50.0%
!! CCACCACAGTTGATAGAGCT+TGG - chr7_3:13352872-13352891 Msa1093430:CDS 50.0%
! GCTTGAGGTGAGTGGATTTG+AGG - chr7_3:13352973-13352992 Msa1093430:CDS 50.0%
GAGCCCAACCCTTAATCACT+AGG + chr7_3:13353018-13353037 None:intergenic 50.0%
GGAGGCTTCTTAACACACTG+CGG - chr7_3:13353070-13353089 Msa1093430:CDS 50.0%
GCTTCTTAACACACTGCGGT+TGG - chr7_3:13353074-13353093 Msa1093430:CDS 50.0%
CTGGTGTGCCAATGGTTACA+TGG - chr7_3:13353122-13353141 Msa1093430:CDS 50.0%
GAGTCCTATGAAATGGGGTG+AGG - chr7_3:13353222-13353241 Msa1093430:CDS 50.0%
!! ATGTGGCCTTGTGCCATCAT+TGG + chr7_3:13352008-13352027 None:intergenic 50.0%
TGTCCATCATGGGGATCATG+TGG + chr7_3:13352025-13352044 None:intergenic 50.0%
CTTGACATGCTACCTGCACT+TGG - chr7_3:13352221-13352240 Msa1093430:CDS 50.0%
CCAAGCTCTATCAACTGTGG+TGG + chr7_3:13352875-13352894 None:intergenic 50.0%
!! CCACCACAGTTGATAGAGCT+TGG - chr7_3:13352872-13352891 Msa1093430:CDS 50.0%
! GCTTGAGGTGAGTGGATTTG+AGG - chr7_3:13352973-13352992 Msa1093430:CDS 50.0%
GAGCCCAACCCTTAATCACT+AGG + chr7_3:13353018-13353037 None:intergenic 50.0%
GGAGGCTTCTTAACACACTG+CGG - chr7_3:13353070-13353089 Msa1093430:CDS 50.0%
GCTTCTTAACACACTGCGGT+TGG - chr7_3:13353074-13353093 Msa1093430:CDS 50.0%
CTGGTGTGCCAATGGTTACA+TGG - chr7_3:13353122-13353141 Msa1093430:CDS 50.0%
GAGTCCTATGAAATGGGGTG+AGG - chr7_3:13353222-13353241 Msa1093430:CDS 50.0%
AGGCCACATGATCCCCATGA+TGG - chr7_3:13352019-13352038 Msa1093430:CDS 55.0%
CATGCTACCTGCACTTGGCA+CGG - chr7_3:13352226-13352245 Msa1093430:CDS 55.0%
AGGCCACATGATCCCCATGA+TGG - chr7_3:13352019-13352038 Msa1093430:CDS 55.0%
CATGCTACCTGCACTTGGCA+CGG - chr7_3:13352226-13352245 Msa1093430:CDS 55.0%
! TTTGAGGCCGTGCCAAGTGC+AGG + chr7_3:13352236-13352255 None:intergenic 60.0%
! TTTGAGGCCGTGCCAAGTGC+AGG + chr7_3:13352236-13352255 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 13351966 13353489 13351966 ID=Msa1093430;Name=Msa1093430
chr7_3 mRNA 13351966 13353489 13351966 ID=Msa1093430-mRNA-1;Parent=Msa1093430;Name=Msa1093430-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|-1|0|1|-1|1|1|0|507
chr7_3 exon 13351966 13353489 13351966 ID=Msa1093430-mRNA-1:exon:3149;Parent=Msa1093430-mRNA-1
chr7_3 CDS 13351966 13353489 13351966 ID=Msa1093430-mRNA-1:cds;Parent=Msa1093430-mRNA-1
Gene Sequence

>Msa1093430

ATGGTATCCCAAGACCCAAAACTACACTTTGTGTTGTTTCCAATGATGGCACAAGGCCACATGATCCCCATGATGGACATTGCAAAAATATTGGCACAACATCAAAATGTTATTGTTACAATAGTAACCACCCCAAAAAATGCATCTCGTTTCACATCAATTGTAGCACGTTATGTTGAATATGGTCTTCACATTCAATTAGTCCAACTTGAATTTCCATGTAAAGAGTCTGGATTACCAGAAGGGTGTGAGAATCTTGACATGCTACCTGCACTTGGCACGGCCTCAAACTTCCTCAATGCATTGAAGTTTCTCCAACAAGAAGTTGAAAAGCTGTTTGAAGAGTTCACAACACCAGCAACTTGTATCATCTCTGATATGTGTTTGCCATATACATTTCATGTAGCTAGAAAGTTCAATATTCCAAGAATTTCTTTTCTTGGAGTAAGTTGCTTCCATCTCTTCAATATGCATAATTTTCATGTCAATAATATGGCCGAAATCATGGCTAATAAAGAATCTGAATACTTTGAATTGCCTGGTATCCCTGACAAAATTGAAATGACAATAGCACAAACAGGACTAGGAGAATTAAAGGGCGAAGCTTGGAAACAATTTAATGATGACTTGCTTGAAGCTGAAACGGGTAGTTATGGGATGCTCGTGAATTCTTTTGAAGAGTTAGAGCCAACATATGCAAGGGATTATAAAAAGGTAAGAAATGATAAAGTTTGGTGTATTGGTCCTGTATCACTTAGTAACACGGATTACTTGGATAAGGTTCAAAGAGGTAATAATAATATTAATAAGGATTCAAATGATGAATGGGATCACTTGAAATGGCTTGATTCTCAGAAACAAGGGAGTGTTATCTATGCATGCTTTGGAAGTTTATGCAATTTAACACCACCACAGTTGATAGAGCTTGGTTTAGCATTAGAGGCAACAAAAAGACCTTTTATTTGGGTTTTAAGAGAGGGAAATCAGTTAGAAGAGTTGAAAAAATGGCTTGAGGTGAGTGGATTTGAGGGAAGAATCAATGGTAGAAGCCTAGTGATTAAGGGTTGGGCTCCTCAGTTATTGATATTGTCACATCAAGCAATTGGAGGCTTCTTAACACACTGCGGTTGGAATTCTACTCTAGAAGCAATATGTGCTGGTGTGCCAATGGTTACATGGCCACTTTTTGCGGACCAATTTTTGAATGAATGTTTAGTTGTACAAATATTAAATGTTGGTGTGAAAATTGGGGTGAAGAGTCCTATGAAATGGGGTGAGGAAGAAGAAAGTGACGTGTTGGTCAAGAAAGAAGATGTTGAAAGAGGAATAGAAATGTTAATGGATGATAAAAGTGAAAGTGAAGAAAGAAGAAAAAGAATTAGGGAGCTTGGTAAAATGGCTAAAAAGGCTGTAGAAAGAGGGGGATCTTCTCACTCTAATTTTACATTGTTTATCCAAGATATCATGCAAAAAAGTAAGGATATGGTGTCATCATTTGCCAATGAAAATACCAATTCAAAATGA
Protein sequence

>Msa1093430

MVSQDPKLHFVLFPMMAQGHMIPMMDIAKILAQHQNVIVTIVTTPKNASRFTSIVARYVEYGLHIQLVQLEFPCKESGLPEGCENLDMLPALGTASNFLNALKFLQQEVEKLFEEFTTPATCIISDMCLPYTFHVARKFNIPRISFLGVSCFHLFNMHNFHVNNMAEIMANKESEYFELPGIPDKIEMTIAQTGLGELKGEAWKQFNDDLLEAETGSYGMLVNSFEELEPTYARDYKKVRNDKVWCIGPVSLSNTDYLDKVQRGNNNINKDSNDEWDHLKWLDSQKQGSVIYACFGSLCNLTPPQLIELGLALEATKRPFIWVLREGNQLEELKKWLEVSGFEGRINGRSLVIKGWAPQLLILSHQAIGGFLTHCGWNSTLEAICAGVPMVTWPLFADQFLNECLVVQILNVGVKIGVKSPMKWGEEEESDVLVKKEDVERGIEMLMDDKSESEERRKRIRELGKMAKKAVERGGSSHSNFTLFIQDIMQKSKDMVSSFANENTNSK*