Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945980 | XP_024639431.1 | 90.909 | 154 | 14 | 0 | 55 | 208 | 1 | 154 | 6.24e-93 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945980 | A0A396HXP9 | 90.909 | 154 | 14 | 0 | 55 | 208 | 1 | 154 | 2.98e-93 | 285 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0681250 | Msa0945980 | 0.827507 | 1.506133e-54 | -8.615850e-47 |
| Msa0681270 | Msa0945980 | 0.823164 | 1.604948e-53 | -8.615850e-47 |
| Msa0685750 | Msa0945980 | 0.805001 | 1.648136e-49 | -8.615850e-47 |
| Msa0806800 | Msa0945980 | 0.803776 | 2.966736e-49 | -8.615850e-47 |
| Msa0403260 | Msa0945980 | 0.823758 | 1.165994e-53 | -8.615850e-47 |
| Msa0251270 | Msa0945980 | 0.800500 | 1.400047e-48 | -8.615850e-47 |
| Msa0503060 | Msa0945980 | 0.815731 | 7.956455e-52 | -8.615850e-47 |
| Msa0945980 | Msa1032850 | 0.809921 | 1.490021e-50 | -8.615850e-47 |
| Msa0945980 | Msa1084950 | 0.800328 | 1.517160e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945980 | MtrunA17_Chr5g0426721 | 90.909 | 154 | 14 | 0 | 55 | 208 | 1 | 154 | 5.74e-97 | 285 |
| Msa0945980 | MtrunA17_Chr3g0132461 | 46.154 | 156 | 66 | 3 | 55 | 208 | 1 | 140 | 4.76e-20 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945980 | AT4G09060.1 | 47.097 | 155 | 82 | 0 | 51 | 205 | 13 | 167 | 1.23e-41 | 144 |
| Msa0945980 | AT4G09060.2 | 47.097 | 155 | 82 | 0 | 51 | 205 | 13 | 167 | 1.26e-41 | 145 |
| Msa0945980 | AT1G14680.1 | 48.966 | 145 | 74 | 0 | 55 | 199 | 1 | 145 | 9.55e-39 | 135 |
Find 53 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTTTAAAACATCAAATA+AGG | 0.241709 | 6_3:+26050629 | None:intergenic |
| TTTGATGAAATCGTCGATTT+CGG | 0.249397 | 6_3:+26051219 | None:intergenic |
| TTGATGAAATCGTCGATTTC+GGG | 0.255477 | 6_3:+26051220 | None:intergenic |
| ATTAAGCAAAAGGACATAAA+TGG | 0.302352 | 6_3:-26050472 | Msa0945980:three_prime_UTR |
| TGTTGAGGAGAATCAGAAAT+TGG | 0.314750 | 6_3:-26050905 | Msa0945980:CDS |
| GAAGCTTGATGTCGAGGGTT+TGG | 0.314876 | 6_3:+26051158 | None:intergenic |
| GTATACCAAGTATCTTCTTT+TGG | 0.316543 | 6_3:+26050404 | None:intergenic |
| CTTTGCACTTTGAAAAGAAA+TGG | 0.319528 | 6_3:-26050345 | Msa0945980:three_prime_UTR |
| AAGCTTGATGTCGAGGGTTT+GGG | 0.338482 | 6_3:+26051159 | None:intergenic |
| TTTGCTTAATTGCTTTGATA+AGG | 0.370063 | 6_3:+26050485 | None:intergenic |
| GTGAGAAGCAGTAGTGATTC+TGG | 0.370229 | 6_3:+26052789 | None:intergenic |
| TGGGATGTTGGAACGTGATT+TGG | 0.388755 | 6_3:-26050746 | Msa0945980:CDS |
| GTCGAGGGTTTGGGAGGAGA+TGG | 0.389737 | 6_3:+26051168 | None:intergenic |
| GGAAGGCGTGTTTGCGAGCT+GGG | 0.415287 | 6_3:-26050765 | Msa0945980:CDS |
| CAATCCATCGACCACTCATT+AGG | 0.420092 | 6_3:-26051196 | Msa0945980:CDS |
| AGCGATGAGGGAGGCGGCGA+CGG | 0.437000 | 6_3:+26052763 | None:intergenic |
| TATCAAAGCAATTAAGCAAA+AGG | 0.454889 | 6_3:-26050482 | Msa0945980:three_prime_UTR |
| AGGAAGGCGTGTTTGCGAGC+TGG | 0.456033 | 6_3:-26050766 | Msa0945980:CDS |
| GCGAAGTGTGAGAATCTGTT+GGG | 0.460066 | 6_3:-26050880 | Msa0945980:CDS |
| GTTGGGGCATTGTAGAGAAC+TGG | 0.463463 | 6_3:-26050863 | Msa0945980:CDS |
| TTTCAAAATGAAGCTGAAGA+AGG | 0.465135 | 6_3:-26050793 | Msa0945980:CDS |
| CTCACTCTCGCCGGAACCTA+AGG | 0.470941 | 6_3:-26052738 | Msa0945980:intron |
| TCGAGGGTTTGGGAGGAGAT+GGG | 0.471014 | 6_3:+26051169 | None:intergenic |
| AATATCATATGATTACATAA+AGG | 0.477200 | 6_3:-26050368 | Msa0945980:three_prime_UTR |
| AATTGTCTTACCTTAGGTTC+CGG | 0.482824 | 6_3:+26052728 | None:intergenic |
| CGAGAGTGAGAGAGCGATGA+GGG | 0.518620 | 6_3:+26052751 | None:intergenic |
| AGCTGAAGAAGGAGCGAGGA+AGG | 0.518905 | 6_3:-26050782 | Msa0945980:CDS |
| TCTCACCAAAAGAAGATACT+TGG | 0.521512 | 6_3:-26050409 | Msa0945980:three_prime_UTR |
| TGAGAGAGCGATGAGGGAGG+CGG | 0.527182 | 6_3:+26052757 | None:intergenic |
| GATGGTGATGGTGTTGTTGT+CGG | 0.530230 | 6_3:+26051255 | None:intergenic |
| GGCACGAAGCTTGATGTCGA+GGG | 0.536194 | 6_3:+26051153 | None:intergenic |
| ATGTTCTTAACATAAGAAGA+AGG | 0.541332 | 6_3:-26050538 | Msa0945980:three_prime_UTR |
| CGAACTCATTGAACAATCCA+AGG | 0.552460 | 6_3:-26051062 | Msa0945980:intron |
| ATGTCGCCATGAGATTGAAT+CGG | 0.559587 | 6_3:-26050698 | Msa0945980:CDS |
| ATGATACCGATTCAATCTCA+TGG | 0.571091 | 6_3:+26050692 | None:intergenic |
| AGGCACGAAGCTTGATGTCG+AGG | 0.581651 | 6_3:+26051152 | None:intergenic |
| CTTGATGTCGAGGGTTTGGG+AGG | 0.585010 | 6_3:+26051162 | None:intergenic |
| TTCGGGTGGAAGAGACATGA+TGG | 0.585743 | 6_3:+26051237 | None:intergenic |
| AGCGAAGTGTGAGAATCTGT+TGG | 0.590825 | 6_3:-26050881 | Msa0945980:CDS |
| GGCGATAAAGAAGTTTGTTG+AGG | 0.590972 | 6_3:-26050920 | Msa0945980:CDS |
| CATCGCTCTCTCACTCTCGC+CGG | 0.603353 | 6_3:-26052747 | Msa0945980:CDS |
| AAGACCTAATGAGTGGTCGA+TGG | 0.616951 | 6_3:+26051192 | None:intergenic |
| ATGAAATCGTCGATTTCGGG+TGG | 0.634730 | 6_3:+26051223 | None:intergenic |
| GTGTTTGCGAGCTGGGATGT+TGG | 0.635975 | 6_3:-26050758 | Msa0945980:CDS |
| GCATTGTAGAGAACTGGAGA+AGG | 0.636476 | 6_3:-26050857 | Msa0945980:CDS |
| GAGTGAGAGAGCGATGAGGG+AGG | 0.643813 | 6_3:+26052754 | None:intergenic |
| GCGAGAGTGAGAGAGCGATG+AGG | 0.652031 | 6_3:+26052750 | None:intergenic |
| CGAAGTGTGAGAATCTGTTG+GGG | 0.661772 | 6_3:-26050879 | Msa0945980:CDS |
| TGGAAGAGACATGATGGTGA+TGG | 0.667795 | 6_3:+26051243 | None:intergenic |
| ATGAAGCTGAAGAAGGAGCG+AGG | 0.675640 | 6_3:-26050786 | Msa0945980:CDS |
| AGATGGGAAGACCTAATGAG+TGG | 0.676635 | 6_3:+26051185 | None:intergenic |
| GTATGAAGCGTCTGTGAATG+CGG | 0.695860 | 6_3:-26050944 | Msa0945980:CDS |
| TGAAGCGTCTGTGAATGCGG+TGG | 0.757584 | 6_3:-26050941 | Msa0945980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTTATTTTTGAAAAAATA+AGG | - | chr6_3:26051266-26051285 | Msa0945980:CDS | 10.0% |
| !!! | TTAGTTTTAAATTTAATTGT+TGG | + | chr6_3:26052937-26052956 | None:intergenic | 10.0% |
| !!! | TTTTATAAACATTTTTTATG+TGG | - | chr6_3:26053022-26053041 | Msa0945980:intron | 10.0% |
| !! | AAAATAAATAATAGTAATCA+TGG | + | chr6_3:26053904-26053923 | None:intergenic | 10.0% |
| !!! | ATTACTATTATTTATTTTTC+AGG | - | chr6_3:26053906-26053925 | Msa0945980:intron | 10.0% |
| !!! | TAATTTTTGATTATCTTTTT+TGG | - | chr6_3:26053948-26053967 | Msa0945980:intron | 10.0% |
| !!! | TTTTTTGTGATTGTTTAATA+GGG | + | chr6_3:26050822-26050841 | None:intergenic | 15.0% |
| !!! | ATTTTTTGTGATTGTTTAAT+AGG | + | chr6_3:26050823-26050842 | None:intergenic | 15.0% |
| !!! | TTTTGTTTAAATGATTGTTA+AGG | - | chr6_3:26051042-26051061 | Msa0945980:intron | 15.0% |
| !!! | GTTTATATTCTCATTTTTAT+AGG | + | chr6_3:26051147-26051166 | None:intergenic | 15.0% |
| !!! | AAGAATAGATTTTCAATTTA+TGG | + | chr6_3:26051232-26051251 | None:intergenic | 15.0% |
| !! | ACTTCTTTCAAAAAAAAAAA+AGG | + | chr6_3:26051293-26051312 | None:intergenic | 15.0% |
| !!! | AGGTAAAACAATTTTTAATT+GGG | + | chr6_3:26051475-26051494 | None:intergenic | 15.0% |
| !!! | TTTTACCTCAAATTAAAAAA+AGG | - | chr6_3:26051487-26051506 | Msa0945980:intron | 15.0% |
| !!! | TGGATATTTTAAATCTTAAA+AGG | - | chr6_3:26052604-26052623 | Msa0945980:intron | 15.0% |
| !!! | AATTTTCTGTTGATAAAATT+AGG | + | chr6_3:26052717-26052736 | None:intergenic | 15.0% |
| !!! | CAATTAAATTTAAAACTAAC+TGG | - | chr6_3:26052938-26052957 | Msa0945980:intron | 15.0% |
| !! | AAAAGTGAAAATTATACATT+AGG | + | chr6_3:26053445-26053464 | None:intergenic | 15.0% |
| !!! | TTTTTATTATTTTCTTCTCT+AGG | - | chr6_3:26053543-26053562 | Msa0945980:intron | 15.0% |
| !!! | TATTATTTATTTTTCAGGAA+TGG | - | chr6_3:26053911-26053930 | Msa0945980:intron | 15.0% |
| !!! | AATCTTTAAAACATCAAATA+AGG | + | chr6_3:26054299-26054318 | None:intergenic | 15.0% |
| !! | AATATCATATGATTACATAA+AGG | - | chr6_3:26054557-26054576 | Msa0945980:intron | 15.0% |
| !! | AAAAACTCATAGGATATAAA+AGG | + | chr6_3:26050484-26050503 | None:intergenic | 20.0% |
| !! | TTTGGATTATAGAATTCAAA+CGG | - | chr6_3:26050520-26050539 | Msa0945980:three_prime_UTR | 20.0% |
| !! | TTAATTGGGATAAAATAATC+AGG | + | chr6_3:26051461-26051480 | None:intergenic | 20.0% |
| !!! | GAGGTAAAACAATTTTTAAT+TGG | + | chr6_3:26051476-26051495 | None:intergenic | 20.0% |
| !!! | CTTAACCTTTTTTTAATTTG+AGG | + | chr6_3:26051495-26051514 | None:intergenic | 20.0% |
| !! | TTAAGAGTTGTATATATTGA+GGG | - | chr6_3:26051510-26051529 | Msa0945980:intron | 20.0% |
| !! | AATTCTCATAAGAAAAAAGA+GGG | + | chr6_3:26051543-26051562 | None:intergenic | 20.0% |
| !! | AAATTCTCATAAGAAAAAAG+AGG | + | chr6_3:26051544-26051563 | None:intergenic | 20.0% |
| !!! | AAGTATTTTTTGTACGTTAA+TGG | + | chr6_3:26051657-26051676 | None:intergenic | 20.0% |
| !! | TTTATTCACATAGAAAAAGA+GGG | + | chr6_3:26051947-26051966 | None:intergenic | 20.0% |
| !! | ATTTATTCACATAGAAAAAG+AGG | + | chr6_3:26051948-26051967 | None:intergenic | 20.0% |
| !!! | ATAAATTGGGTTTTAGATTA+TGG | - | chr6_3:26052584-26052603 | Msa0945980:intron | 20.0% |
| !! | GCTACAATTAAAGTAATAAA+TGG | + | chr6_3:26052695-26052714 | None:intergenic | 20.0% |
| !! | ATTGTAACCTAATTGTAAAA+TGG | - | chr6_3:26052734-26052753 | Msa0945980:intron | 20.0% |
| !! | TTGTAACCTAATTGTAAAAT+GGG | - | chr6_3:26052735-26052754 | Msa0945980:intron | 20.0% |
| !! | TTTCTAATCAAGTTTCTAAA+CGG | + | chr6_3:26052809-26052828 | None:intergenic | 20.0% |
| !! | GAATATATACCATGAAAAAT+TGG | + | chr6_3:26052879-26052898 | None:intergenic | 20.0% |
| !! | TTATTTCACAATTTCTAATG+TGG | - | chr6_3:26052962-26052981 | Msa0945980:intron | 20.0% |
| !! | AATTATACATTAGGTGAAAA+AGG | + | chr6_3:26053436-26053455 | None:intergenic | 20.0% |
| !!! | TCTAGGTTTATTTTATATGA+AGG | - | chr6_3:26053560-26053579 | Msa0945980:intron | 20.0% |
| !!! | CTTTTTGTTTTAGTTTTTGA+AGG | + | chr6_3:26053842-26053861 | None:intergenic | 20.0% |
| !! | ATAAATAATAGTAATCATGG+AGG | + | chr6_3:26053901-26053920 | None:intergenic | 20.0% |
| !!! | TGATTATCTTTTTTGGTTTT+TGG | - | chr6_3:26053955-26053974 | Msa0945980:intron | 20.0% |
| !!! | ACAAACTTTTTTTTTTCACG+TGG | - | chr6_3:26050392-26050411 | Msa0945980:three_prime_UTR | 25.0% |
| !! | AAATGATTTGTCTTCACAAT+AGG | + | chr6_3:26050454-26050473 | None:intergenic | 25.0% |
| !! | ATATTTCAAAGTTTAGAACC+CGG | - | chr6_3:26050582-26050601 | Msa0945980:three_prime_UTR | 25.0% |
| ! | TATAGGATGGATAAAAGTAA+TGG | - | chr6_3:26050624-26050643 | Msa0945980:exon | 25.0% |
| ! | TCTTTCATCGATAAATTAGA+AGG | - | chr6_3:26051081-26051100 | Msa0945980:CDS | 25.0% |
| ! | AAAAGTAATTCTCAAGCAAA+CGG | + | chr6_3:26051190-26051209 | None:intergenic | 25.0% |
| ! | AATAAAATTGGAGAGAGATA+AGG | + | chr6_3:26051408-26051427 | None:intergenic | 25.0% |
| ! | GTTAAGAGTTGTATATATTG+AGG | - | chr6_3:26051509-26051528 | Msa0945980:intron | 25.0% |
| ! | ATTCTCATAAGAAAAAAGAG+GGG | + | chr6_3:26051542-26051561 | None:intergenic | 25.0% |
| !!! | TGAGAATTTTTTTGCGATAT+AGG | - | chr6_3:26051555-26051574 | Msa0945980:intron | 25.0% |
| !! | TTTTAGATTTGTGCTTAAGT+CGG | - | chr6_3:26051676-26051695 | Msa0945980:intron | 25.0% |
| ! | TTATTCTATCAACCTTAAGT+CGG | + | chr6_3:26051786-26051805 | None:intergenic | 25.0% |
| ! | AAGAAGTCATTTACTTAAGT+CGG | - | chr6_3:26051861-26051880 | Msa0945980:intron | 25.0% |
| ! | AAATAGAGAGAAAAATCCTT+AGG | + | chr6_3:26051903-26051922 | None:intergenic | 25.0% |
| !! | GAAACCTTTTCTCTTAAAAA+AGG | - | chr6_3:26052067-26052086 | Msa0945980:intron | 25.0% |
| !!! | TTGTTTTAGGGTTTTAGAAT+TGG | - | chr6_3:26052245-26052264 | Msa0945980:intron | 25.0% |
| !!! | TGTTTTAGGGTTTTAGAATT+GGG | - | chr6_3:26052246-26052265 | Msa0945980:intron | 25.0% |
| ! | AATTGGATATTGTGAATCAT+AGG | - | chr6_3:26052282-26052301 | Msa0945980:intron | 25.0% |
| ! | TGTGAATCATAGGAATAAAT+TGG | - | chr6_3:26052292-26052311 | Msa0945980:intron | 25.0% |
| ! | GTGAATCATAGGAATAAATT+GGG | - | chr6_3:26052293-26052312 | Msa0945980:intron | 25.0% |
| ! | ATAGGAATAAATTGGGAATT+GGG | - | chr6_3:26052300-26052319 | Msa0945980:intron | 25.0% |
| ! | GATATCTCTATGCAAAATAA+AGG | + | chr6_3:26052396-26052415 | None:intergenic | 25.0% |
| !! | ACTTTCAATTTTGTTGAATC+TGG | - | chr6_3:26052432-26052451 | Msa0945980:intron | 25.0% |
| ! | TATACTCTGTTAGCATATTT+CGG | + | chr6_3:26052468-26052487 | None:intergenic | 25.0% |
| ! | CAGAGTATAAAACAAAAGAT+TGG | - | chr6_3:26052479-26052498 | Msa0945980:intron | 25.0% |
| !! | ATCTTGTTGTGCATATAAAT+TGG | - | chr6_3:26052570-26052589 | Msa0945980:intron | 25.0% |
| !! | TCTTGTTGTGCATATAAATT+GGG | - | chr6_3:26052571-26052590 | Msa0945980:intron | 25.0% |
| ! | ATGAGAACTTCTTTCATTTA+CGG | - | chr6_3:26052627-26052646 | Msa0945980:intron | 25.0% |
| ! | ATTAAAAATCATGCATAACG+AGG | + | chr6_3:26053075-26053094 | None:intergenic | 25.0% |
| ! | GTTGTTAAGAGATAATATGT+GGG | - | chr6_3:26053248-26053267 | Msa0945980:intron | 25.0% |
| ! | TTGTTAAGAGATAATATGTG+GGG | - | chr6_3:26053249-26053268 | Msa0945980:intron | 25.0% |
| ! | ATGTCTCTTAATAAGACTAA+GGG | - | chr6_3:26053375-26053394 | Msa0945980:intron | 25.0% |
| !! | AAAAAGGCATAAAATAACAC+GGG | + | chr6_3:26053420-26053439 | None:intergenic | 25.0% |
| !! | GAAAAAGGCATAAAATAACA+CGG | + | chr6_3:26053421-26053440 | None:intergenic | 25.0% |
| !!! | TTTCACTTTTGTCTTCTTAA+AGG | - | chr6_3:26053455-26053474 | Msa0945980:intron | 25.0% |
| ! | ATATTCATAAGTCAACTAGT+TGG | - | chr6_3:26053494-26053513 | Msa0945980:intron | 25.0% |
| ! | AACATGGTAAGCAAAATTTA+AGG | + | chr6_3:26053616-26053635 | None:intergenic | 25.0% |
| !! | TTCTTTAATCCTTTTTGTTG+AGG | - | chr6_3:26054266-26054285 | Msa0945980:intron | 25.0% |
| ! | ATGTTCTTAACATAAGAAGA+AGG | - | chr6_3:26054387-26054406 | Msa0945980:intron | 25.0% |
| ! | TTTGCTTAATTGCTTTGATA+AGG | + | chr6_3:26054443-26054462 | None:intergenic | 25.0% |
| ! | TATCAAAGCAATTAAGCAAA+AGG | - | chr6_3:26054443-26054462 | Msa0945980:intron | 25.0% |
| ! | ATTAAGCAAAAGGACATAAA+TGG | - | chr6_3:26054453-26054472 | Msa0945980:intron | 25.0% |
| !! | GGTTTTGATATGTTCGTATT+TGG | - | chr6_3:26050413-26050432 | Msa0945980:three_prime_UTR | 30.0% |
| TTCTATAATCCAAACTGCAT+AGG | + | chr6_3:26050514-26050533 | None:intergenic | 30.0% | |
| AAGCGTCAAACATAAATGAT+TGG | + | chr6_3:26050650-26050669 | None:intergenic | 30.0% | |
| AACATTCAAACATGTTGTGA+TGG | + | chr6_3:26050755-26050774 | None:intergenic | 30.0% | |
| TGAAAAATATCATTTCTCCG+CGG | - | chr6_3:26050989-26051008 | Msa0945980:intron | 30.0% | |
| TTGGACATGGTCAATAAAAT+TGG | + | chr6_3:26051420-26051439 | None:intergenic | 30.0% | |
| ! | ATTTTATTGACCATGTCCAA+TGG | - | chr6_3:26051420-26051439 | Msa0945980:intron | 30.0% |
| !!! | TTTTTTGTACGTTAATGGAC+TGG | + | chr6_3:26051652-26051671 | None:intergenic | 30.0% |
| TCTTTCAAACTTCCTTAAGT+CGG | - | chr6_3:26051748-26051767 | Msa0945980:intron | 30.0% | |
| TATTCTATCAACCTTAAGTC+GGG | + | chr6_3:26051785-26051804 | None:intergenic | 30.0% | |
| AATAATTTCCTTAAGTCGCT+AGG | - | chr6_3:26051823-26051842 | Msa0945980:intron | 30.0% | |
| !!! | ACTGCCTTTTTTAAGAGAAA+AGG | + | chr6_3:26052074-26052093 | None:intergenic | 30.0% |
| AGAATCAATTGTCTTACCTT+AGG | + | chr6_3:26052206-26052225 | None:intergenic | 30.0% | |
| CTAAAACCCTAAAACAAGAA+AGG | + | chr6_3:26052242-26052261 | None:intergenic | 30.0% | |
| TGGGAATTGTTTGTGTAAAT+TGG | - | chr6_3:26052265-26052284 | Msa0945980:intron | 30.0% | |
| CATAGGAATAAATTGGGAAT+TGG | - | chr6_3:26052299-26052318 | Msa0945980:intron | 30.0% | |
| GCATAGAGATATCTTCAAAT+TGG | - | chr6_3:26052403-26052422 | Msa0945980:intron | 30.0% | |
| !! | ACAAAAGATTGGTCTTTCTT+AGG | - | chr6_3:26052490-26052509 | Msa0945980:intron | 30.0% |
| TTGTTTCAAACATTACACGA+TGG | - | chr6_3:26052541-26052560 | Msa0945980:intron | 30.0% | |
| TGAGAACTTCTTTCATTTAC+GGG | - | chr6_3:26052628-26052647 | Msa0945980:intron | 30.0% | |
| ! | CAAAGTACACCAATTTTTCA+TGG | - | chr6_3:26052867-26052886 | Msa0945980:intron | 30.0% |
| CATCACATAATGCTAAATTC+TGG | + | chr6_3:26053127-26053146 | None:intergenic | 30.0% | |
| ! | TTTAGCATTATGTGATGATG+AGG | - | chr6_3:26053130-26053149 | Msa0945980:intron | 30.0% |
| GGTTGTTAAGAGATAATATG+TGG | - | chr6_3:26053247-26053266 | Msa0945980:intron | 30.0% | |
| GATGTCTCTTAATAAGACTA+AGG | - | chr6_3:26053374-26053393 | Msa0945980:intron | 30.0% | |
| AAAATAACACGGGAAAACAA+AGG | + | chr6_3:26053410-26053429 | None:intergenic | 30.0% | |
| ! | TTTTGCTTACCATGTTTTAC+AGG | - | chr6_3:26053620-26053639 | Msa0945980:intron | 30.0% |
| !! | TTTGATGAAATCGTCGATTT+CGG | + | chr6_3:26053709-26053728 | None:intergenic | 30.0% |
| ! | ATTTTGTTCGATTTCTTTCG+AGG | + | chr6_3:26053796-26053815 | None:intergenic | 30.0% |
| TTTCAAAATGAAGCTGAAGA+AGG | - | chr6_3:26054132-26054151 | Msa0945980:intron | 30.0% | |
| !! | AAGGACATAAATGGACTTTT+TGG | - | chr6_3:26054462-26054481 | Msa0945980:intron | 30.0% |
| ! | GTATACCAAGTATCTTCTTT+TGG | + | chr6_3:26054524-26054543 | None:intergenic | 30.0% |
| ! | CTTTGCACTTTGAAAAGAAA+TGG | - | chr6_3:26054580-26054599 | Msa0945980:intron | 30.0% |
| AGAACGCGCAAAAAACTTAT+AGG | - | chr6_3:26050607-26050626 | Msa0945980:three_prime_UTR | 35.0% | |
| TCATTTATGTTTGACGCTTG+CGG | - | chr6_3:26050651-26050670 | Msa0945980:CDS | 35.0% | |
| ! | CTTTTGTTCCTTAAATACCG+CGG | + | chr6_3:26051009-26051028 | None:intergenic | 35.0% |
| GAACTTGTGAATTTCACCAT+TGG | + | chr6_3:26051439-26051458 | None:intergenic | 35.0% | |
| GAGTTGTATATATTGAGGGA+TGG | - | chr6_3:26051514-26051533 | Msa0945980:intron | 35.0% | |
| ATAGTGTACATTCGAACGAA+TGG | - | chr6_3:26051578-26051597 | Msa0945980:intron | 35.0% | |
| TAGTGTACATTCGAACGAAT+GGG | - | chr6_3:26051579-26051598 | Msa0945980:intron | 35.0% | |
| AGAGAGAAAAATCCTTAGGT+CGG | + | chr6_3:26051899-26051918 | None:intergenic | 35.0% | |
| AATTGTCTTACCTTAGGTTC+CGG | + | chr6_3:26052200-26052219 | None:intergenic | 35.0% | |
| ACAAGAAAGGAAGGAGAAAT+TGG | + | chr6_3:26052229-26052248 | None:intergenic | 35.0% | |
| !!! | TCTCCTTCCTTTCTTGTTTT+AGG | - | chr6_3:26052232-26052251 | Msa0945980:intron | 35.0% |
| !!! | CTCCTTCCTTTCTTGTTTTA+GGG | - | chr6_3:26052233-26052252 | Msa0945980:intron | 35.0% |
| AACCCTAAAACAAGAAAGGA+AGG | + | chr6_3:26052238-26052257 | None:intergenic | 35.0% | |
| TCTACACATAGAGTATACGA+TGG | + | chr6_3:26052361-26052380 | None:intergenic | 35.0% | |
| ACTCTATGTGTAGAGTCAAT+AGG | - | chr6_3:26052367-26052386 | Msa0945980:intron | 35.0% | |
| CTTAGGATGAATAGCTTCAT+AGG | - | chr6_3:26052507-26052526 | Msa0945980:intron | 35.0% | |
| ! | GTGTAGCCCATTTTACAATT+AGG | + | chr6_3:26052744-26052763 | None:intergenic | 35.0% |
| !! | GGTTTGATTTGAGATCAAAG+GGG | + | chr6_3:26052788-26052807 | None:intergenic | 35.0% |
| !! | CGGTTTGATTTGAGATCAAA+GGG | + | chr6_3:26052789-26052808 | None:intergenic | 35.0% |
| !! | ACGGTTTGATTTGAGATCAA+AGG | + | chr6_3:26052790-26052809 | None:intergenic | 35.0% |
| CAATGTCACGTGTTTAAACA+TGG | + | chr6_3:26052847-26052866 | None:intergenic | 35.0% | |
| GTAGCTTACATACATTCACA+TGG | + | chr6_3:26053220-26053239 | None:intergenic | 35.0% | |
| TTATCTCTTAACAACCAGCA+GGG | + | chr6_3:26053243-26053262 | None:intergenic | 35.0% | |
| ATTATCTCTTAACAACCAGC+AGG | + | chr6_3:26053244-26053263 | None:intergenic | 35.0% | |
| ! | AATGATACTTCGTCAAGTTG+TGG | - | chr6_3:26053308-26053327 | Msa0945980:intron | 35.0% |
| TGGTTTACAACATTGCTTCT+AGG | - | chr6_3:26053328-26053347 | Msa0945980:intron | 35.0% | |
| ! | CTTTTGTCTTCTTAAAGGCA+AGG | - | chr6_3:26053460-26053479 | Msa0945980:intron | 35.0% |
| ! | TACGATGTTTTGCTTGATGA+TGG | - | chr6_3:26053587-26053606 | Msa0945980:intron | 35.0% |
| TATACTGCTCCTGTAAAACA+TGG | + | chr6_3:26053632-26053651 | None:intergenic | 35.0% | |
| !! | TTGATGAAATCGTCGATTTC+GGG | + | chr6_3:26053708-26053727 | None:intergenic | 35.0% |
| TGTTGAGGAGAATCAGAAAT+TGG | - | chr6_3:26054020-26054039 | Msa0945980:intron | 35.0% | |
| !! | ATGATACCGATTCAATCTCA+TGG | + | chr6_3:26054236-26054255 | None:intergenic | 35.0% |
| ! | GGATTTTGTCCTCAACAAAA+AGG | + | chr6_3:26054278-26054297 | None:intergenic | 35.0% |
| TCTCACCAAAAGAAGATACT+TGG | - | chr6_3:26054516-26054535 | Msa0945980:intron | 35.0% | |
| TGTTCGTATTTGGACTGCTA+AGG | - | chr6_3:26050423-26050442 | Msa0945980:three_prime_UTR | 40.0% | |
| GTTCGTATTTGGACTGCTAA+GGG | - | chr6_3:26050424-26050443 | Msa0945980:three_prime_UTR | 40.0% | |
| !!! | AGTTTTTTGCGCGTTCTATC+CGG | + | chr6_3:26050604-26050623 | None:intergenic | 40.0% |
| CGCGCAAAAAACTTATAGGA+TGG | - | chr6_3:26050611-26050630 | Msa0945980:three_prime_UTR | 40.0% | |
| CATTTATGTTTGACGCTTGC+GGG | - | chr6_3:26050652-26050671 | Msa0945980:CDS | 40.0% | |
| !! | ATCAAACTTGGCTTTGCGAT+TGG | + | chr6_3:26050700-26050719 | None:intergenic | 40.0% |
| AATCGCAAAGCCAAGTTTGA+TGG | - | chr6_3:26050699-26050718 | Msa0945980:CDS | 40.0% | |
| TCATTTCTCCGCGGTATTTA+AGG | - | chr6_3:26050998-26051017 | Msa0945980:intron | 40.0% | |
| GTGAATTTCACCATTGGACA+TGG | + | chr6_3:26051433-26051452 | None:intergenic | 40.0% | |
| AGTGTACATTCGAACGAATG+GGG | - | chr6_3:26051580-26051599 | Msa0945980:intron | 40.0% | |
| GGACTTATGCATGATGCATA+AGG | + | chr6_3:26051631-26051650 | None:intergenic | 40.0% | |
| ACTTCCTTAAGTCGGTTGTA+AGG | - | chr6_3:26051756-26051775 | Msa0945980:intron | 40.0% | |
| ! | GTAACCTTACAACCGACTTA+AGG | + | chr6_3:26051763-26051782 | None:intergenic | 40.0% |
| TTGTAAGGTTACCCGACTTA+AGG | - | chr6_3:26051771-26051790 | Msa0945980:intron | 40.0% | |
| TTGATCAACCTAGCGACTTA+AGG | + | chr6_3:26051834-26051853 | None:intergenic | 40.0% | |
| GAGAGAAAAATCCTTAGGTC+GGG | + | chr6_3:26051898-26051917 | None:intergenic | 40.0% | |
| !! | TGTCTGTTGTGGTTTGGTTA+TGG | - | chr6_3:26052331-26052350 | Msa0945980:intron | 40.0% |
| !! | TGCTTGAAGTAGTGTTGGTA+GGG | + | chr6_3:26052664-26052683 | None:intergenic | 40.0% |
| !! | TTGCTTGAAGTAGTGTTGGT+AGG | + | chr6_3:26052665-26052684 | None:intergenic | 40.0% |
| GTCATTGCTTGAAGTAGTGT+TGG | + | chr6_3:26052669-26052688 | None:intergenic | 40.0% | |
| ! | GAGTATCTAGCTTAGTTGGT+TGG | + | chr6_3:26052766-26052785 | None:intergenic | 40.0% |
| ! | GGTCTTTTCTCTCACTTCAT+TGG | - | chr6_3:26052983-26053002 | Msa0945980:intron | 40.0% |
| ! | TGATGATGAGGACATACGAA+AGG | - | chr6_3:26053142-26053161 | Msa0945980:intron | 40.0% |
| GACATACGAAAGGACAGAAA+TGG | - | chr6_3:26053152-26053171 | Msa0945980:intron | 40.0% | |
| TATCTCTTAACAACCAGCAG+GGG | + | chr6_3:26053242-26053261 | None:intergenic | 40.0% | |
| !! | GTTTTGATGCTTTGTAGGCT+AGG | - | chr6_3:26053271-26053290 | Msa0945980:intron | 40.0% |
| CATAAGTCAACTAGTTGGCT+CGG | - | chr6_3:26053499-26053518 | Msa0945980:intron | 40.0% | |
| CGAACTCATTGAACAATCCA+AGG | - | chr6_3:26053863-26053882 | Msa0945980:intron | 40.0% | |
| GGAGGATTTGAAAGAAACCT+TGG | + | chr6_3:26053883-26053902 | None:intergenic | 40.0% | |
| !! | GGCGATAAAGAAGTTTGTTG+AGG | - | chr6_3:26054005-26054024 | Msa0945980:intron | 40.0% |
| ATGTCGCCATGAGATTGAAT+CGG | - | chr6_3:26054227-26054246 | Msa0945980:intron | 40.0% | |
| !!! | GTTTTTTGCGCGTTCTATCC+GGG | + | chr6_3:26050603-26050622 | None:intergenic | 45.0% |
| AGAAAAATCCTTAGGTCGGG+TGG | + | chr6_3:26051895-26051914 | None:intergenic | 45.0% | |
| GTGAGAAGCAGTAGTGATTC+TGG | + | chr6_3:26052139-26052158 | None:intergenic | 45.0% | |
| CTGTTGTGTCTGTTGTGGTT+TGG | - | chr6_3:26052325-26052344 | Msa0945980:intron | 45.0% | |
| !! | GCTTGAAGTAGTGTTGGTAG+GGG | + | chr6_3:26052663-26052682 | None:intergenic | 45.0% |
| !! | AGGGGAGTATCTAGCTTAGT+TGG | + | chr6_3:26052770-26052789 | None:intergenic | 45.0% |
| GAAAGGACAGAAATGGAGCT+AGG | - | chr6_3:26053159-26053178 | Msa0945980:intron | 45.0% | |
| !! | GTGGGGTTTTGATGCTTTGT+AGG | - | chr6_3:26053266-26053285 | Msa0945980:intron | 45.0% |
| !! | GATGGTGATGGTGTTGTTGT+CGG | + | chr6_3:26053673-26053692 | None:intergenic | 45.0% |
| ! | TGGAAGAGACATGATGGTGA+TGG | + | chr6_3:26053685-26053704 | None:intergenic | 45.0% |
| !! | ATGAAATCGTCGATTTCGGG+TGG | + | chr6_3:26053705-26053724 | None:intergenic | 45.0% |
| CAATCCATCGACCACTCATT+AGG | - | chr6_3:26053729-26053748 | Msa0945980:intron | 45.0% | |
| AAGACCTAATGAGTGGTCGA+TGG | + | chr6_3:26053736-26053755 | None:intergenic | 45.0% | |
| AGATGGGAAGACCTAATGAG+TGG | + | chr6_3:26053743-26053762 | None:intergenic | 45.0% | |
| AAGCTTGATGTCGAGGGTTT+GGG | + | chr6_3:26053769-26053788 | None:intergenic | 45.0% | |
| ! | GTATGAAGCGTCTGTGAATG+CGG | - | chr6_3:26053981-26054000 | Msa0945980:intron | 45.0% |
| AGCGAAGTGTGAGAATCTGT+TGG | - | chr6_3:26054044-26054063 | Msa0945980:intron | 45.0% | |
| GCGAAGTGTGAGAATCTGTT+GGG | - | chr6_3:26054045-26054064 | Msa0945980:intron | 45.0% | |
| CGAAGTGTGAGAATCTGTTG+GGG | - | chr6_3:26054046-26054065 | Msa0945980:intron | 45.0% | |
| GCATTGTAGAGAACTGGAGA+AGG | - | chr6_3:26054068-26054087 | Msa0945980:intron | 45.0% | |
| TGGGATGTTGGAACGTGATT+TGG | - | chr6_3:26054179-26054198 | Msa0945980:intron | 45.0% | |
| !! | TTAATTAATTAATAAAAAGA+GGG | + | chr6_3:26051977-26051996 | None:intergenic | 5.0% |
| !! | ATTAATTAATTAATAAAAAG+AGG | + | chr6_3:26051978-26051997 | None:intergenic | 5.0% |
| AGGACGCGCGAAAAACTCAT+AGG | + | chr6_3:26050494-26050513 | None:intergenic | 50.0% | |
| CCTGAACGGTCCATCAAACT+TGG | + | chr6_3:26050712-26050731 | None:intergenic | 50.0% | |
| ! | CCAAGTTTGATGGACCGTTC+AGG | - | chr6_3:26050709-26050728 | Msa0945980:CDS | 50.0% |
| ! | AAGGTTGGTTGTGGCCTGAA+CGG | + | chr6_3:26050726-26050745 | None:intergenic | 50.0% |
| TTGTGATGGTCCTCCAAGGT+TGG | + | chr6_3:26050741-26050760 | None:intergenic | 50.0% | |
| CATGTTGTGATGGTCCTCCA+AGG | + | chr6_3:26050745-26050764 | None:intergenic | 50.0% | |
| ACATTCGAACGAATGGGGTG+TGG | - | chr6_3:26051585-26051604 | Msa0945980:intron | 50.0% | |
| GAACGAATGGGGTGTGGTTA+TGG | - | chr6_3:26051591-26051610 | Msa0945980:intron | 50.0% | |
| GGGTGTGGTTATGGTGCATA+AGG | - | chr6_3:26051600-26051619 | Msa0945980:intron | 50.0% | |
| ! | ACCCGTCTTAACAAGTGTCG+CGG | - | chr6_3:26051710-26051729 | Msa0945980:intron | 50.0% |
| ! | ACCGCGACACTTGTTAAGAC+GGG | + | chr6_3:26051714-26051733 | None:intergenic | 50.0% |
| ! | CACCGCGACACTTGTTAAGA+CGG | + | chr6_3:26051715-26051734 | None:intergenic | 50.0% |
| GGGAACTGTTGTGTCTGTTG+TGG | - | chr6_3:26052320-26052339 | Msa0945980:intron | 50.0% | |
| CAGAAATGGAGCTAGGACCA+TGG | - | chr6_3:26053166-26053185 | Msa0945980:intron | 50.0% | |
| GAGTCTGACAGATTGGACCA+TGG | + | chr6_3:26053186-26053205 | None:intergenic | 50.0% | |
| TCCAATCTGTCAGACTCTGC+TGG | - | chr6_3:26053189-26053208 | Msa0945980:intron | 50.0% | |
| TCCAGCAGAGTCTGACAGAT+TGG | + | chr6_3:26053193-26053212 | None:intergenic | 50.0% | |
| TGTATGTAAGCTACCCCTGC+TGG | - | chr6_3:26053226-26053245 | Msa0945980:intron | 50.0% | |
| TTCGGGTGGAAGAGACATGA+TGG | + | chr6_3:26053691-26053710 | None:intergenic | 50.0% | |
| GAAGCTTGATGTCGAGGGTT+TGG | + | chr6_3:26053770-26053789 | None:intergenic | 50.0% | |
| !! | GTTGGGGCATTGTAGAGAAC+TGG | - | chr6_3:26054062-26054081 | Msa0945980:intron | 50.0% |
| ATGAAGCTGAAGAAGGAGCG+AGG | - | chr6_3:26054139-26054158 | Msa0945980:intron | 50.0% | |
| TTCGCGCGTCCTATGCAGTT+TGG | - | chr6_3:26050502-26050521 | Msa0945980:three_prime_UTR | 55.0% | |
| ACGCTTGCGGGACTGTGAAT+TGG | - | chr6_3:26050664-26050683 | Msa0945980:CDS | 55.0% | |
| CTTGCGGGACTGTGAATTGG+TGG | - | chr6_3:26050667-26050686 | Msa0945980:CDS | 55.0% | |
| GTTCAGGCCACAACCAACCT+TGG | - | chr6_3:26050725-26050744 | Msa0945980:CDS | 55.0% | |
| ! | TGGTCCTCCAAGGTTGGTTG+TGG | + | chr6_3:26050735-26050754 | None:intergenic | 55.0% |
| ! | GCGACACTTGTTAAGACGGG+TGG | + | chr6_3:26051711-26051730 | None:intergenic | 55.0% |
| ! | CGTCTTAACAAGTGTCGCGG+TGG | - | chr6_3:26051713-26051732 | Msa0945980:intron | 55.0% |
| TCTGTTGACCACCCGACCTA+AGG | - | chr6_3:26051884-26051903 | Msa0945980:intron | 55.0% | |
| CGAGAGTGAGAGAGCGATGA+GGG | + | chr6_3:26052177-26052196 | None:intergenic | 55.0% | |
| !! | AGTGTTGGTAGGGGCAGCTT+TGG | + | chr6_3:26052654-26052673 | None:intergenic | 55.0% |
| TCGAGGGTTTGGGAGGAGAT+GGG | + | chr6_3:26053759-26053778 | None:intergenic | 55.0% | |
| CTTGATGTCGAGGGTTTGGG+AGG | + | chr6_3:26053766-26053785 | None:intergenic | 55.0% | |
| GGCACGAAGCTTGATGTCGA+GGG | + | chr6_3:26053775-26053794 | None:intergenic | 55.0% | |
| AGGCACGAAGCTTGATGTCG+AGG | + | chr6_3:26053776-26053795 | None:intergenic | 55.0% | |
| ! | TGAAGCGTCTGTGAATGCGG+TGG | - | chr6_3:26053984-26054003 | Msa0945980:intron | 55.0% |
| AGCTGAAGAAGGAGCGAGGA+AGG | - | chr6_3:26054143-26054162 | Msa0945980:intron | 55.0% | |
| GTGTTTGCGAGCTGGGATGT+TGG | - | chr6_3:26054167-26054186 | Msa0945980:intron | 55.0% | |
| CAGGCCACAACCAACCTTGG+AGG | - | chr6_3:26050728-26050747 | Msa0945980:CDS | 60.0% | |
| TGAGAGAGCGATGAGGGAGG+CGG | + | chr6_3:26052171-26052190 | None:intergenic | 60.0% | |
| GAGTGAGAGAGCGATGAGGG+AGG | + | chr6_3:26052174-26052193 | None:intergenic | 60.0% | |
| GCGAGAGTGAGAGAGCGATG+AGG | + | chr6_3:26052178-26052197 | None:intergenic | 60.0% | |
| CATCGCTCTCTCACTCTCGC+CGG | - | chr6_3:26052178-26052197 | Msa0945980:intron | 60.0% | |
| CTCACTCTCGCCGGAACCTA+AGG | - | chr6_3:26052187-26052206 | Msa0945980:intron | 60.0% | |
| GTCGAGGGTTTGGGAGGAGA+TGG | + | chr6_3:26053760-26053779 | None:intergenic | 60.0% | |
| ! | AGGAAGGCGTGTTTGCGAGC+TGG | - | chr6_3:26054159-26054178 | Msa0945980:intron | 60.0% |
| ! | GGAAGGCGTGTTTGCGAGCT+GGG | - | chr6_3:26054160-26054179 | Msa0945980:intron | 60.0% |
| AGCGATGAGGGAGGCGGCGA+CGG | + | chr6_3:26052165-26052184 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 26050336 | 26054611 | 26050336 | ID=Msa0945980;Name=Msa0945980 |
| chr6_3 | mRNA | 26050336 | 26054611 | 26050336 | ID=Msa0945980-mRNA-1;Parent=Msa0945980;Name=Msa0945980-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.33|0.25|0.75|0.33|0.25|4|306|225 |
| chr6_3 | exon | 26050336 | 26050965 | 26050336 | ID=Msa0945980-mRNA-1:exon:7204;Parent=Msa0945980-mRNA-1 |
| chr6_3 | exon | 26051063 | 26051294 | 26051063 | ID=Msa0945980-mRNA-1:exon:7203;Parent=Msa0945980-mRNA-1 |
| chr6_3 | exon | 26052739 | 26052854 | 26052739 | ID=Msa0945980-mRNA-1:exon:7202;Parent=Msa0945980-mRNA-1 |
| chr6_3 | exon | 26054606 | 26054611 | 26054606 | ID=Msa0945980-mRNA-1:exon:7201;Parent=Msa0945980-mRNA-1 |
| chr6_3 | CDS | 26054606 | 26054611 | 26054606 | ID=Msa0945980-mRNA-1:cds;Parent=Msa0945980-mRNA-1 |
| chr6_3 | CDS | 26052739 | 26052854 | 26052739 | ID=Msa0945980-mRNA-1:cds;Parent=Msa0945980-mRNA-1 |
| chr6_3 | CDS | 26051063 | 26051294 | 26051063 | ID=Msa0945980-mRNA-1:cds;Parent=Msa0945980-mRNA-1 |
| chr6_3 | CDS | 26050642 | 26050965 | 26050642 | ID=Msa0945980-mRNA-1:cds;Parent=Msa0945980-mRNA-1 |
| chr6_3 | three_prime_UTR | 26050336 | 26050641 | 26050336 | ID=Msa0945980-mRNA-1:three_prime_utr;Parent=Msa0945980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
