AlfalfaGEDB | Msa0403260

M. sativa cultivar zhongmu-4 / Msa0403260

KEGG: -
GO: -
PFAM: PF12776.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0403260	XP_013459505.1	40.341	176	102	1	629	804	18	190	5.94e-27	131
Msa0403260	XP_013459505.1	40.800	375	197	7	402	763	117	479	3.35e-79	286
Msa0403260	XP_013459505.1	41.640	317	172	4	448	758	3	312	5.42e-63	240
Msa0403260	XP_013459505.1	42.614	176	98	1	18	190	509	684	2.20e-33	151
Msa0403260	XP_013459505.1	59.322	649	208	9	1	599	1	643	0.0	696
Msa0403260	XP_013459505.1	96.435	533	19	0	407	939	287	819	0.0	1074

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0403260	sp\|Q9FFJ8\|LIMYB_ARATH	23.596	267	192	3	26	287	6	265	8.28e-15	81.6
Msa0403260	sp\|Q9FFJ8\|LIMYB_ARATH	19.298	285	227	2	472	756	7	288	7.49e-11	69.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0403260	A0A072UVU8	40.341	176	102	1	629	804	18	190	2.84e-27	131
Msa0403260	A0A072UVU8	40.800	375	197	7	402	763	117	479	1.60e-79	286
Msa0403260	A0A072UVU8	41.640	317	172	4	448	758	3	312	2.59e-63	240
Msa0403260	A0A072UVU8	42.614	176	98	1	18	190	509	684	1.05e-33	151
Msa0403260	A0A072UVU8	59.322	649	208	9	1	599	1	643	0.0	696
Msa0403260	A0A072UVU8	96.435	533	19	0	407	939	287	819	0.0	1074

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006110	Msa0403260	0.822866	1.883031e-53	-8.615850e-47
Msa0011500	Msa0403260	0.810907	9.124942e-51	-8.615850e-47
Msa0031180	Msa0403260	0.842787	2.089446e-58	-8.615850e-47
Msa0034180	Msa0403260	0.809327	1.998539e-50	-8.615850e-47
Msa0036140	Msa0403260	0.815406	9.397040e-52	-8.615850e-47
Msa0037120	Msa0403260	0.812940	3.291990e-51	-8.615850e-47
Msa0039250	Msa0403260	0.807720	4.403160e-50	-8.615850e-47
Msa0043500	Msa0403260	0.823741	1.176363e-53	-8.615850e-47
Msa0043650	Msa0403260	0.804506	2.090700e-49	-8.615850e-47
Msa0045340	Msa0403260	0.825360	4.889885e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0403260	MtrunA17_Chr3g0093841	96.435	533	19	0	407	939	287	819	0.0	1074
Msa0403260	MtrunA17_Chr3g0093841	59.322	649	208	9	1	599	1	643	0.0	696
Msa0403260	MtrunA17_Chr3g0093841	40.800	375	197	7	402	763	117	479	3.08e-83	286
Msa0403260	MtrunA17_Chr3g0093841	41.640	317	172	4	448	758	3	312	4.98e-67	240
Msa0403260	MtrunA17_Chr3g0093841	42.614	176	98	1	18	190	509	684	2.03e-37	151
Msa0403260	MtrunA17_Chr3g0093841	40.341	176	102	1	629	804	18	190	5.46e-31	131
Msa0403260	MtrunA17_Chr1g0176881	29.282	362	197	7	27	355	25	360	7.85e-40	156
Msa0403260	MtrunA17_Chr1g0176881	27.797	295	204	4	472	759	25	317	9.69e-34	138
Msa0403260	MtrunA17_Chr1g0176881	28.431	204	129	5	402	592	115	314	5.52e-21	98.6
Msa0403260	MtrunA17_Chr1g0176881	35.484	155	96	2	613	766	2	153	5.94e-20	95.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0403260	AT4G02210.1	30.126	478	267	13	472	938	14	435	4.77e-58	206
Msa0403260	AT4G02210.1	33.579	271	173	4	26	289	13	283	3.70e-44	166
Msa0403260	AT4G02210.1	27.972	143	103	0	2	144	161	303	8.25e-20	94.0
Msa0403260	AT4G02210.1	26.556	241	151	4	402	626	105	335	1.33e-19	93.2
Msa0403260	AT4G02210.1	33.036	112	74	1	183	293	5	116	1.46e-13	74.7
Msa0403260	AT4G02210.2	30.126	478	267	13	472	938	14	435	4.77e-58	206
Msa0403260	AT4G02210.2	33.579	271	173	4	26	289	13	283	3.70e-44	166
Msa0403260	AT4G02210.2	27.972	143	103	0	2	144	161	303	8.25e-20	94.0
Msa0403260	AT4G02210.2	26.556	241	151	4	402	626	105	335	1.33e-19	93.2
Msa0403260	AT4G02210.2	33.036	112	74	1	183	293	5	116	1.46e-13	74.7

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Find 242 sgRNAs with CRISPR-Local

Find 702 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCGGCTGAAGACTTGG+AGG	0.534868	3_2:-32823054	Msa0403260:CDS
AAAATGGCGAGTTCTGCGTA+AGG	0.641260	3_2:-32820273	Msa0403260:intron
AAACCAAAACTACTTGGAAA+GGG	0.489308	3_2:-32817406	Msa0403260:three_prime_UTR
AAACTTGAAACGGAGCACGC+CGG	0.636793	3_2:+32827596	None:intergenic
AAAGAACTTCTGGGCAAGAG+TGG	0.608647	3_2:-32819264	Msa0403260:CDS
AAAGCATTAAATGAAAAGTT+TGG	0.356406	3_2:-32823103	Msa0403260:CDS
AACATGGAATGAATATATTA+AGG	0.326139	3_2:-32818611	Msa0403260:intron
AACATGGATTGACTACATCC+GGG	0.613940	3_2:-32822351	Msa0403260:intron
AACCAAAACTACTTGGAAAG+GGG	0.608058	3_2:-32817405	None:intergenic
AACGAGTTAGGTTTGATTGT+TGG	0.432874	3_2:-32818088	Msa0403260:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGGATGTGAAAAGAGAATT+AGG	+	chr3_2:32817512-32817531	None:intergenic	30.0%
TCTCAATTGAAATCTGTGTT+TGG	+	chr3_2:32817531-32817550	None:intergenic	30.0%
GTCTTGATACAAACATGTAT+TGG	-	chr3_2:32818044-32818063	Msa0403260:CDS	30.0%
CATCCTCAACCTTAAAAAAA+AGG	-	chr3_2:32818081-32818100	Msa0403260:CDS	30.0%
TCCAACAAAAGGTCTAAATA+GGG	-	chr3_2:32818225-32818244	Msa0403260:intron	30.0%
CCAAAAAATTTCTCCACAAT+AGG	-	chr3_2:32818389-32818408	Msa0403260:intron	30.0%
ATGCTTAAACAATGTCCTTA+GGG	-	chr3_2:32818577-32818596	Msa0403260:intron	30.0%
ATTGTATCTCCAATACTTCT+CGG	+	chr3_2:32818666-32818685	None:intergenic	30.0%
ATTGGAGATACAATACAATG+TGG	-	chr3_2:32818672-32818691	Msa0403260:CDS	30.0%
TGTTAATTGTTTGTGAGTAC+CGG	-	chr3_2:32818786-32818805	Msa0403260:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	32817406	32827892	32817406	ID=Msa0403260;Name=Msa0403260
chr3_2	mRNA	32817406	32827892	32817406	ID=Msa0403260-mRNA-1;Parent=Msa0403260;Name=Msa0403260-mRNA-1;_AED=0.11;_eAED=0.11;_QI=371\|0.62\|0.77\|0.77\|0.75\|0.55\|9\|80\|939
chr3_2	exon	32817406	32817467	32817406	ID=Msa0403260-mRNA-1:exon:6525;Parent=Msa0403260-mRNA-1
chr3_2	exon	32817520	32818158	32817520	ID=Msa0403260-mRNA-1:exon:6524;Parent=Msa0403260-mRNA-1
chr3_2	exon	32818612	32819103	32818612	ID=Msa0403260-mRNA-1:exon:6523;Parent=Msa0403260-mRNA-1
chr3_2	exon	32819197	32819682	32819197	ID=Msa0403260-mRNA-1:exon:6522;Parent=Msa0403260-mRNA-1
chr3_2	exon	32820274	32820440	32820274	ID=Msa0403260-mRNA-1:exon:6521;Parent=Msa0403260-mRNA-1
chr3_2	exon	32820891	32821083	32820891	ID=Msa0403260-mRNA-1:exon:6520;Parent=Msa0403260-mRNA-1
chr3_2	exon	32822352	32822846	32822352	ID=Msa0403260-mRNA-1:exon:6519;Parent=Msa0403260-mRNA-1
chr3_2	exon	32822946	32823313	32822946	ID=Msa0403260-mRNA-1:exon:6518;Parent=Msa0403260-mRNA-1
chr3_2	exon	32827524	32827892	32827524	ID=Msa0403260-mRNA-1:exon:6517;Parent=Msa0403260-mRNA-1
chr3_2	five_prime_UTR	32827524	32827892	32827524	ID=Msa0403260-mRNA-1:five_prime_utr;Parent=Msa0403260-mRNA-1
chr3_2	five_prime_UTR	32823312	32823313	32823312	ID=Msa0403260-mRNA-1:five_prime_utr;Parent=Msa0403260-mRNA-1
chr3_2	CDS	32822946	32823311	32822946	ID=Msa0403260-mRNA-1:cds;Parent=Msa0403260-mRNA-1
chr3_2	CDS	32822352	32822846	32822352	ID=Msa0403260-mRNA-1:cds;Parent=Msa0403260-mRNA-1
chr3_2	CDS	32820891	32821083	32820891	ID=Msa0403260-mRNA-1:cds;Parent=Msa0403260-mRNA-1
chr3_2	CDS	32820274	32820440	32820274	ID=Msa0403260-mRNA-1:cds;Parent=Msa0403260-mRNA-1
chr3_2	CDS	32819197	32819682	32819197	ID=Msa0403260-mRNA-1:cds;Parent=Msa0403260-mRNA-1
chr3_2	CDS	32818612	32819103	32818612	ID=Msa0403260-mRNA-1:cds;Parent=Msa0403260-mRNA-1
chr3_2	CDS	32817538	32818158	32817538	ID=Msa0403260-mRNA-1:cds;Parent=Msa0403260-mRNA-1
chr3_2	three_prime_UTR	32817520	32817537	32817520	ID=Msa0403260-mRNA-1:three_prime_utr;Parent=Msa0403260-mRNA-1
chr3_2	three_prime_UTR	32817406	32817467	32817406	ID=Msa0403260-mRNA-1:three_prime_utr;Parent=Msa0403260-mRNA-1

Gene Sequence

>Msa0403260

ATGCATCCAAAAGTATACCAGACTCGTAGCTCTACTGCTGTAGACCGAGGAGCTACAGACCGAGGAAAATACATAGTATGGACAAGTGAAATGGACAATTGCCTGACTGATGTGCTTGCAGAGCAGGTGGAAAAGGGGAATAAAGTGGATAACATCTTGAAGCCGGCAGCATTTGCCGCTGCACTGAAAGCATTAAATGAAAAGTTTGGCATGCATATGACAAAAGGACACATAAAAAATCGGCTGAAGACTTGGAGGAAGCAGTTTGGGGTTTTGAAGGAACTCATTTCCCATAGGGGATTTGTTTGGAATAAGACACAAAAGATGGTTGTGGCCAATGATTCTGTTTGGAATGACTACATCAAGGAGCACCCTGATGCCAAGATTTTCCGAGCAAAGTCCATTGAAAACTATGATAAATTATGTATTATTCTTGAAAGTGATCAATCAATTGCAAGATTTTCTGACAATGTTACTGAAATTGATGTAAACTTCACAGTTGATGACGAAGAGCCAGATCTTGTCATTTTATCTGAAACACAAACTGATGGAAACCTGACTAAGCACCTCAGATGGACAGAGGAAATGGATCACTGGCTTGGAAAGATTCTCGTAGATCAAGTGAGGAAAGGGCTTAAAATAGATAATGTCTTTCAGACAGAAGCATATGACAAAGCTGTTTCCGCCATGAATGCAAAATTTGGGCATCATCTAACAAAATTTCACATTAAAAATCGTCTTAAAACATGGAAGAAACAGTATGAAATAGCAAAGGAAATTCTGTCTCATGCTGGATTTAAATGGGACGAAACAAAGAAAATGATCATTGCAAATGATTCAACATGGATTGACTACATCCGGGCGCATTCTTACTCGAAAATGTGTGAAACCGGGTTGAAAAGGCGCTACTGGTACCGGGTCGGAAACAGGTCAAACAGGGCAAGATGCGCGAAACCAGCACGAGGAAAAGTACTGCTCCCAAGATCTCGTGATCTTCCACTATGGACGGGCTCATTCCATGATCTTAGCACTGATACGATTGAGGGAGAAAAACGCATGATTCCATTGAAACTCAATACTAACAATCTTCAAACACCACCAAACAAACAATCTTCGATTTCAGCACCACCAAAGATGCTCTCATCGATTTCGATTGTCTCCATCAATCTTCAATTGGGTCCTAACACTGTAAAATGGGGAAAATGGCGAGTTCTGCGTAAGACACATCCAGATGCAAGGACTTACCGTGCTAGGGTCCTGGAGAACTATGAGCAGTTCTGCACTATCTTTGGCCATTTCAATGAGCCTTTGCATCGTAATGACTCTGTGCCTTGTGACGAGCCTTTCGAATTTGAAAGTGTCGGTCCAGTTAACTATGATAGCAATCTTAAAGATGTAATGAAGCATATGAGGTGGACAAGTGATATGGACAGCTGTTTAAGTGAGATTCTCGTGCAGCAAATTAAACTTGGTAACAGAAGCAGATTTGACCACAAACTAAGACCTGCTGCATTGGAAGCTGCTGTGCAGGCTATTAATGAAAAGTTTAAGCTTTATATGTCAAAAGATCATATTAAAAACCGTCTTAAAACATGGAAGAAACAATATGATATCCTGAAAGAACTTCTGGGCAAGAGTGGCTTCGAATGGGATGAGAACCGAAAAATGGTCATTGCAGATGATTCTGTATGGAATGAATATATTAAGATAAATCCTGATGTTCGAATTCTTAAAGGACGAGTCATCAGAAACTATGAGGAGCTGTGCATAATCATTGGTCACATTGATCCACCAGGTATGATCACTGCTCGTGCTAAGATGGGTATGATTACAGATGATAATGTTATGGAAGCTCAAGAGACAAATTACCATGGAACTGACAATACAACGGAAAAAGGAAAGAGTGTGACATGGACAGATGAAATGGATCTTTGCTTGACAGAGCTTCTTGTCAAGCAAGTGATGTTGGGAAATAAGCTTGAGAAAAATTTTAAGACCTCAGCTTACATAGCTACTCTAGCAGTTCTAAATGAGAGATTTGACCTGAATTTAACAATAGAAAACATTAAAAGCCGGTTAAGAACATGGAAGAAGCAGTATGTCCTTATGAAGGAAATGCTTTCTCGTGGGGGATTTGAGTGGGATGAAGGACGTAAGATGGTTGTTGCAACTGATTCAACATGGAATGAATATATTAAGAAACATCGAGATGCTAGGAGTCTGCGAGACAAACGAATAGAGAACTTCAACGAGTTAGGTTTGATTGTTGGCAATGAGGAAGCTAGTGGAAATTGGTCGGAAGACACTGAGATGTTTGATGTAAACCTTGCTCCTAACTTTGTAGAGAATGCAGATGTAAATCTTACTCCTACCTTTGAAGAGCACGCTGATGTAAATATCATTCCTCACTTTGAAGAGCAAGCTGAATCTCCAACACCGATGTCAGCGAATGAAGAGGAGATGAGCCATGATAATGCAATTGATGAAGTGCAGGGTTCATCTGAGCAAACAGGGGCAAGGCCTTCGTCATCACATTCAAAGCAGCCATCAAAACGGAGACGCACCGATGATGTGATGCTACAAATGATGAATGTTATGGCTGCTGATATCGGTCGGATAGCCGATGCATTGACGGAAAGGAACAAAACTGCGTGCTTGGAGGAAGTGGTTGAAAAGGTGCAGAATATTCCCGACTTTGATGACGATCTCATTATTGAAGCTTGTGAATATTTATGTTTCGATGAGAAGAGAGGATTGATGTTTTTGAATTTAAAAGAGAGATTGAGAAAAAAGTGGTTGTTGAAACGTTTGCGTGGTTAA

Protein sequence

>Msa0403260

MHPKVYQTRSSTAVDRGATDRGKYIVWTSEMDNCLTDVLAEQVEKGNKVDNILKPAAFAAALKALNEKFGMHMTKGHIKNRLKTWRKQFGVLKELISHRGFVWNKTQKMVVANDSVWNDYIKEHPDAKIFRAKSIENYDKLCIILESDQSIARFSDNVTEIDVNFTVDDEEPDLVILSETQTDGNLTKHLRWTEEMDHWLGKILVDQVRKGLKIDNVFQTEAYDKAVSAMNAKFGHHLTKFHIKNRLKTWKKQYEIAKEILSHAGFKWDETKKMIIANDSTWIDYIRAHSYSKMCETGLKRRYWYRVGNRSNRARCAKPARGKVLLPRSRDLPLWTGSFHDLSTDTIEGEKRMIPLKLNTNNLQTPPNKQSSISAPPKMLSSISIVSINLQLGPNTVKWGKWRVLRKTHPDARTYRARVLENYEQFCTIFGHFNEPLHRNDSVPCDEPFEFESVGPVNYDSNLKDVMKHMRWTSDMDSCLSEILVQQIKLGNRSRFDHKLRPAALEAAVQAINEKFKLYMSKDHIKNRLKTWKKQYDILKELLGKSGFEWDENRKMVIADDSVWNEYIKINPDVRILKGRVIRNYEELCIIIGHIDPPGMITARAKMGMITDDNVMEAQETNYHGTDNTTEKGKSVTWTDEMDLCLTELLVKQVMLGNKLEKNFKTSAYIATLAVLNERFDLNLTIENIKSRLRTWKKQYVLMKEMLSRGGFEWDEGRKMVVATDSTWNEYIKKHRDARSLRDKRIENFNELGLIVGNEEASGNWSEDTEMFDVNLAPNFVENADVNLTPTFEEHADVNIIPHFEEQAESPTPMSANEEEMSHDNAIDEVQGSSEQTGARPSSSHSKQPSKRRRTDDVMLQMMNVMAADIGRIADALTERNKTACLEEVVEKVQNIPDFDDDLIIEACEYLCFDEKRGLMFLNLKERLRKKWLLKRLRG*