Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0946710 | sp|Q9SZ83|Y4967_ARATH | 58.357 | 353 | 147 | 0 | 9 | 361 | 7 | 359 | 5.68e-156 | 445 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0946710 | B7FJM8 | 94.766 | 363 | 19 | 0 | 1 | 363 | 1 | 363 | 0.0 | 724 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0909620 | Msa0946710 | 0.863392 | 2.572233e-64 | -8.615850e-47 |
| Msa0946710 | Msa0986490 | 0.861675 | 8.684640e-64 | -8.615850e-47 |
| Msa0946710 | Msa1446450 | 0.973322 | 3.122714e-136 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0946710 | MtrunA17_Chr6g0464971 | 94.766 | 363 | 19 | 0 | 1 | 363 | 1 | 363 | 0.0 | 724 |
| Msa0946710 | MtrunA17_Chr6g0464961 | 88.981 | 363 | 40 | 0 | 1 | 363 | 23 | 385 | 0.0 | 658 |
| Msa0946710 | MtrunA17_Chr6g0465111 | 62.570 | 358 | 134 | 0 | 5 | 362 | 3 | 360 | 1.45e-173 | 487 |
| Msa0946710 | MtrunA17_Chr6g0465121 | 60.894 | 358 | 135 | 1 | 5 | 362 | 16 | 368 | 1.45e-166 | 469 |
| Msa0946710 | MtrunA17_Chr1g0200981 | 62.429 | 354 | 133 | 0 | 9 | 362 | 6 | 359 | 6.72e-165 | 465 |
| Msa0946710 | MtrunA17_Chr6g0477771 | 54.121 | 364 | 162 | 3 | 1 | 361 | 1 | 362 | 6.34e-142 | 407 |
| Msa0946710 | MtrunA17_Chr3g0110001 | 54.017 | 361 | 162 | 2 | 5 | 361 | 3 | 363 | 1.01e-138 | 399 |
| Msa0946710 | MtrunA17_Chr6g0464931 | 88.182 | 110 | 13 | 0 | 1 | 110 | 1 | 110 | 4.17e-57 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0946710 | AT4G09670.1 | 58.357 | 353 | 147 | 0 | 9 | 361 | 7 | 359 | 5.77e-157 | 445 |
| Msa0946710 | AT1G34200.1 | 54.830 | 352 | 147 | 2 | 9 | 359 | 7 | 347 | 1.60e-136 | 393 |
| Msa0946710 | AT1G66130.1 | 44.199 | 362 | 193 | 6 | 5 | 359 | 3 | 362 | 1.16e-104 | 312 |
Find 106 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATGAGCCATATTCTTTC+TGG | 0.137429 | 6_3:+28657957 | None:intergenic |
| CCAAGGATTCCAAATCTTAT+TGG | 0.177750 | 6_3:+28657925 | None:intergenic |
| ACACCTGCTTCATTGTATTT+TGG | 0.185223 | 6_3:+28654989 | None:intergenic |
| TGTTTAATATGTAAAGATAT+TGG | 0.186002 | 6_3:-28654292 | Msa0946710:three_prime_UTR |
| TTTAATAAAAGTACATATTA+AGG | 0.217593 | 6_3:+28654207 | None:intergenic |
| CATATTCATATCTGATAAAA+AGG | 0.244809 | 6_3:+28654904 | None:intergenic |
| ATTGTAAAGCTGACAATAAA+TGG | 0.249044 | 6_3:-28654655 | Msa0946710:CDS |
| CTATATAATGACTCTTTCTT+AGG | 0.250658 | 6_3:-28654442 | Msa0946710:three_prime_UTR |
| TGGAGAACTTGACAAGATTT+TGG | 0.253525 | 6_3:-28657617 | Msa0946710:CDS |
| ACTATAACCTCACTTGGTTT+TGG | 0.256553 | 6_3:+28654752 | None:intergenic |
| ATAGTTGCTCGTTCCTTAAC+AGG | 0.275405 | 6_3:+28654461 | None:intergenic |
| ATATCTGATCCTAATCTCTT+TGG | 0.283136 | 6_3:-28657511 | Msa0946710:CDS |
| GTTTAATATGTAAAGATATT+GGG | 0.295697 | 6_3:-28654291 | Msa0946710:three_prime_UTR |
| CTTGTGAAGCTTCTTTGATA+TGG | 0.295852 | 6_3:-28654958 | Msa0946710:CDS |
| AAGTATATAACAACTAAATT+TGG | 0.305533 | 6_3:+28658084 | None:intergenic |
| CCAATAAGATTTGGAATCCT+TGG | 0.324504 | 6_3:-28657925 | Msa0946710:CDS |
| CTGGTTGGTGGGATTAAGTA+TGG | 0.329892 | 6_3:-28654680 | Msa0946710:CDS |
| AATATGGATATAACAGCAAT+AGG | 0.330557 | 6_3:-28654887 | Msa0946710:CDS |
| GGTTAAGGAATTTGCTCATC+TGG | 0.331077 | 6_3:-28654699 | Msa0946710:CDS |
| ATCTAATGGATTGCAGTATA+TGG | 0.331709 | 6_3:-28657584 | Msa0946710:CDS |
| ATTCTTTCTGGAAGAGAGAT+TGG | 0.339778 | 6_3:+28657969 | None:intergenic |
| TCTCTCTTCCAGAAAGAATA+TGG | 0.344669 | 6_3:-28657965 | Msa0946710:exon |
| GAAACAAAACCAATAAGATT+TGG | 0.345157 | 6_3:-28657934 | Msa0946710:CDS |
| CCCCGTTAAGTATCCTCTAT+TGG | 0.356343 | 6_3:-28654502 | Msa0946710:three_prime_UTR |
| ATGTCCTTTGCTAGGAAATC+TGG | 0.362493 | 6_3:+28655133 | None:intergenic |
| TTGGAAGCTTGTGAATCTAA+TGG | 0.364162 | 6_3:-28657598 | Msa0946710:CDS |
| CATTATTAGTGTATTGTCAT+TGG | 0.369644 | 6_3:-28654241 | Msa0946710:three_prime_UTR |
| TCTCCAACATTTAAAGCAAC+TGG | 0.374707 | 6_3:+28657634 | None:intergenic |
| TATTCCACAAGAAGCACTTA+TGG | 0.376037 | 6_3:-28654720 | Msa0946710:CDS |
| AACTCAACTCTCTACGCAAT+TGG | 0.388733 | 6_3:-28657853 | Msa0946710:CDS |
| CGACCAGCTTACACCTTCAC+TGG | 0.390665 | 6_3:-28657702 | Msa0946710:CDS |
| AAAGCCTCATTCTCTTCATT+AGG | 0.391917 | 6_3:+28654827 | None:intergenic |
| ACAAGAAGCACTTATGGTTA+AGG | 0.393073 | 6_3:-28654714 | Msa0946710:CDS |
| AAGGATTGGGTGGCTATTAG+AGG | 0.393184 | 6_3:+28658019 | None:intergenic |
| GTGAAAGCTTCAATTGATAA+TGG | 0.396592 | 6_3:-28654593 | Msa0946710:CDS |
| GAGAGTTGAGTTTGGTGAGA+GGG | 0.406943 | 6_3:+28657864 | None:intergenic |
| TGAGTTTGGTGAGAGGGTTA+TGG | 0.410178 | 6_3:+28657870 | None:intergenic |
| TCCAATAGAGGATACTTAAC+GGG | 0.413630 | 6_3:+28654501 | None:intergenic |
| AAACCAGTTGCTTTAAATGT+TGG | 0.419578 | 6_3:-28657637 | Msa0946710:CDS |
| ACTTGGTCCAACTTGCATAA+AGG | 0.422160 | 6_3:-28654376 | Msa0946710:three_prime_UTR |
| GAGATGCTCTAATACTCAAT+AGG | 0.424576 | 6_3:+28654557 | None:intergenic |
| ATAACAGCAATAGGGGCAAA+AGG | 0.425672 | 6_3:-28654878 | Msa0946710:CDS |
| CTCTAATACTCAATAGGAAC+AGG | 0.430101 | 6_3:+28654563 | None:intergenic |
| TATTACTCCTTTATGCAAGT+TGG | 0.438048 | 6_3:+28654369 | None:intergenic |
| TCTCTTTGGTTCCCTTCAAT+CGG | 0.438224 | 6_3:-28657497 | Msa0946710:intron |
| ATATGGATATAACAGCAATA+GGG | 0.448214 | 6_3:-28654886 | Msa0946710:CDS |
| CTCCAATAGAGGATACTTAA+CGG | 0.448905 | 6_3:+28654500 | None:intergenic |
| CTCTTTCTTAGGTAACTAAC+GGG | 0.451806 | 6_3:-28654431 | Msa0946710:three_prime_UTR |
| ATAAATGGGCAATTATTAGT+AGG | 0.455056 | 6_3:-28654640 | Msa0946710:CDS |
| TTGTGAAGCTTCTTTGATAT+GGG | 0.455911 | 6_3:-28654957 | Msa0946710:CDS |
| GTGTGGTTATACTAAGGATT+GGG | 0.463429 | 6_3:+28658006 | None:intergenic |
| TGAAGGGAACCAAAGAGATT+AGG | 0.466089 | 6_3:+28657502 | None:intergenic |
| GTTCCTAGTGCATCAAGATC+TGG | 0.470430 | 6_3:+28655100 | None:intergenic |
| TTGTAAAGCTGACAATAAAT+GGG | 0.474224 | 6_3:-28654654 | Msa0946710:CDS |
| TATTACTCATTTATATAAGC+AGG | 0.478273 | 6_3:+28654328 | None:intergenic |
| ATGTAGACGGCATCGACGTC+CGG | 0.478389 | 6_3:+28657733 | None:intergenic |
| AGTGTGGTTATACTAAGGAT+TGG | 0.479405 | 6_3:+28658005 | None:intergenic |
| ACTTCAGTGTGGTTATACTA+AGG | 0.481279 | 6_3:+28658000 | None:intergenic |
| ATTGCGTAGAGAGTTGAGTT+TGG | 0.482375 | 6_3:+28657856 | None:intergenic |
| AGTATTAGAGCATCTCCAAT+GGG | 0.494063 | 6_3:-28654550 | Msa0946710:exon |
| GGATGAATCATACCGATTGA+AGG | 0.499775 | 6_3:+28657485 | None:intergenic |
| AAGGAATTTGCTCATCTGGT+TGG | 0.501930 | 6_3:-28654695 | Msa0946710:CDS |
| AATTTGCTCATCTGGTTGGT+GGG | 0.506597 | 6_3:-28654691 | Msa0946710:CDS |
| CTTGATGCACTAGGAACACT+AGG | 0.518180 | 6_3:-28655094 | Msa0946710:CDS |
| GTAATAAAATGCGTAAAACT+TGG | 0.519190 | 6_3:-28654393 | Msa0946710:three_prime_UTR |
| GAATTTGCTCATCTGGTTGG+TGG | 0.520943 | 6_3:-28654692 | Msa0946710:CDS |
| TTGTTGAACTTTCTACTGGT+TGG | 0.522425 | 6_3:-28654778 | Msa0946710:CDS |
| AGGTGTAAGCTGGTCGGAAG+TGG | 0.523445 | 6_3:+28657709 | None:intergenic |
| GTAATAAAATGTGTACTACT+TGG | 0.529499 | 6_3:-28654352 | Msa0946710:three_prime_UTR |
| TGCATGGGAAGGGAAATTGT+TGG | 0.532533 | 6_3:+28657792 | None:intergenic |
| TGCCCAGTGAAGGTGTAAGC+TGG | 0.532976 | 6_3:+28657699 | None:intergenic |
| GGAGTGGTCCTTGTTAAGTA+AGG | 0.533286 | 6_3:+28654523 | None:intergenic |
| ACTCTTTCTTAGGTAACTAA+CGG | 0.540399 | 6_3:-28654432 | Msa0946710:three_prime_UTR |
| GCTAGGAAATCTGGACTCAC+CGG | 0.540515 | 6_3:+28655142 | None:intergenic |
| AGAGGATACTTAACGGGGAG+TGG | 0.547127 | 6_3:+28654507 | None:intergenic |
| AAACCAAAATACAATGAAGC+AGG | 0.549712 | 6_3:-28654992 | Msa0946710:CDS |
| CGTTAAGTATCCTCTATTGG+AGG | 0.550849 | 6_3:-28654499 | Msa0946710:three_prime_UTR |
| TAACAGCAATAGGGGCAAAA+GGG | 0.550871 | 6_3:-28654877 | Msa0946710:CDS |
| AGAGAGTTGAGTTTGGTGAG+AGG | 0.560018 | 6_3:+28657863 | None:intergenic |
| TTAACCATAAGTGCTTCTTG+TGG | 0.562009 | 6_3:+28654716 | None:intergenic |
| GATGAATCATACCGATTGAA+GGG | 0.566141 | 6_3:+28657486 | None:intergenic |
| TATACCTAATGAAGAGAATG+AGG | 0.567350 | 6_3:-28654831 | Msa0946710:CDS |
| GACGTCCGGATCATCTAAAA+CGG | 0.571998 | 6_3:+28657747 | None:intergenic |
| TCACACGAATGTCCTTTGCT+AGG | 0.572854 | 6_3:+28655125 | None:intergenic |
| CTAGGAAATCTGGACTCACC+GGG | 0.573636 | 6_3:+28655143 | None:intergenic |
| TATGGATATAACAGCAATAG+GGG | 0.579131 | 6_3:-28654885 | Msa0946710:CDS |
| GAGTATTAGAGCATCTCCAA+TGG | 0.579422 | 6_3:-28654551 | Msa0946710:exon |
| CTAGGAACACTAGGTGACAC+TGG | 0.593492 | 6_3:-28655085 | Msa0946710:CDS |
| GGTCGGAAGTGGCATGTAGA+CGG | 0.596812 | 6_3:+28657720 | None:intergenic |
| TGGTTGGTGGGATTAAGTAT+GGG | 0.605617 | 6_3:-28654679 | Msa0946710:CDS |
| AAGTATCCTCTATTGGAGGA+AGG | 0.607049 | 6_3:-28654495 | Msa0946710:three_prime_UTR |
| AAGCCAGATCTTGATGCACT+AGG | 0.607513 | 6_3:-28655103 | Msa0946710:CDS |
| GAACACTAGGTGACACTGGT+TGG | 0.608823 | 6_3:-28655081 | Msa0946710:CDS |
| GACCAGCTTACACCTTCACT+GGG | 0.617191 | 6_3:-28657701 | Msa0946710:CDS |
| TATTAGTAGGAAAACTCAAG+TGG | 0.621897 | 6_3:-28654627 | Msa0946710:CDS |
| GAGTCCAGATTTCCTAGCAA+AGG | 0.627187 | 6_3:-28655137 | Msa0946710:CDS |
| TAGCTATCTCTGCACAACCA+AGG | 0.627873 | 6_3:+28657908 | None:intergenic |
| CAGTGAAGGTGTAAGCTGGT+CGG | 0.634499 | 6_3:+28657703 | None:intergenic |
| TGGTTATACTAAGGATTGGG+TGG | 0.635340 | 6_3:+28658009 | None:intergenic |
| TATTAGAGCATCTCCAATGG+GGG | 0.655302 | 6_3:-28654548 | Msa0946710:exon |
| TTGGAATCCAAAACCAAGTG+AGG | 0.661767 | 6_3:-28654759 | Msa0946710:CDS |
| CCAATAGAGGATACTTAACG+GGG | 0.684716 | 6_3:+28654502 | None:intergenic |
| TGGAAAAGTAAACTTCAGTG+TGG | 0.697034 | 6_3:+28657989 | None:intergenic |
| ATTAGAGCATCTCCAATGGG+GGG | 0.701573 | 6_3:-28654547 | Msa0946710:exon |
| GTATTAGAGCATCTCCAATG+GGG | 0.721305 | 6_3:-28654549 | Msa0946710:exon |
| AGTATATGGATTCTACTATG+TGG | 0.724513 | 6_3:-28657570 | Msa0946710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCAATTTTTGTTAAAATT+AGG | - | chr6_3:28654855-28654874 | Msa0946710:CDS | 10.0% |
| !!! | ATTTATTTTAGACTAAAATA+TGG | - | chr6_3:28654926-28654945 | Msa0946710:CDS | 10.0% |
| !!! | AAAAACAATTTTTTTTTACA+GGG | + | chr6_3:28654990-28655009 | None:intergenic | 10.0% |
| !!! | TAAAAACAATTTTTTTTTAC+AGG | + | chr6_3:28654991-28655010 | None:intergenic | 10.0% |
| !!! | AACTATTTTGTTTTTTAAAA+AGG | + | chr6_3:28655059-28655078 | None:intergenic | 10.0% |
| !! | AAATTATCTTCATAAAATAA+AGG | + | chr6_3:28655268-28655287 | None:intergenic | 10.0% |
| !!! | TAAACAAAATTTATTTTAGT+AGG | - | chr6_3:28656191-28656210 | Msa0946710:intron | 10.0% |
| !!! | AAACAAAATTTATTTTAGTA+GGG | - | chr6_3:28656192-28656211 | Msa0946710:intron | 10.0% |
| !!! | TAAGTAAATTTTTTTTTTGT+AGG | - | chr6_3:28656225-28656244 | Msa0946710:intron | 10.0% |
| !!! | AAGTAAATTTTTTTTTTGTA+GGG | - | chr6_3:28656226-28656245 | Msa0946710:intron | 10.0% |
| !!! | TAAATTTTATTGTATTTTTG+AGG | - | chr6_3:28656342-28656361 | Msa0946710:intron | 10.0% |
| !!! | AAATTTTATTGTATTTTTGA+GGG | - | chr6_3:28656343-28656362 | Msa0946710:intron | 10.0% |
| !! | ACAAAAAAAAAAAAAATATG+TGG | - | chr6_3:28657030-28657049 | Msa0946710:intron | 10.0% |
| !! | AAGTATATAACAACTAAATT+TGG | + | chr6_3:28654223-28654242 | None:intergenic | 15.0% |
| !!! | AAAAAACAAAAATTTTTGCA+GGG | + | chr6_3:28655016-28655035 | None:intergenic | 15.0% |
| !!! | TAAAAAACAAAAATTTTTGC+AGG | + | chr6_3:28655017-28655036 | None:intergenic | 15.0% |
| !!! | TAAAAAACAAAAAATTTTGC+AGG | - | chr6_3:28655164-28655183 | Msa0946710:CDS | 15.0% |
| !!! | AAAAAACAAAAAATTTTGCA+GGG | - | chr6_3:28655165-28655184 | Msa0946710:CDS | 15.0% |
| !! | AAACAAAACAAAAAATTACA+TGG | - | chr6_3:28655193-28655212 | Msa0946710:intron | 15.0% |
| !! | ATAAAATAAAGGCTAAAATA+TGG | + | chr6_3:28655257-28655276 | None:intergenic | 15.0% |
| !!! | GAAATAATTTTTTTTACAAG+AGG | - | chr6_3:28655363-28655382 | Msa0946710:intron | 15.0% |
| !!! | AATCATTGTTGTAAATTTTA+AGG | + | chr6_3:28655403-28655422 | None:intergenic | 15.0% |
| !! | TTAAAATTTACAACAATGAT+TGG | - | chr6_3:28655402-28655421 | Msa0946710:intron | 15.0% |
| !! | TAAAATTTACAACAATGATT+GGG | - | chr6_3:28655403-28655422 | Msa0946710:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | + | chr6_3:28655841-28655860 | None:intergenic | 15.0% |
| !!! | AATTTTTGCGATATTTTTTT+CGG | + | chr6_3:28655997-28656016 | None:intergenic | 15.0% |
| !! | AGATATAAGTAACAAAAATA+TGG | + | chr6_3:28656032-28656051 | None:intergenic | 15.0% |
| !! | AAAGCTATTAAAATTAAGTA+AGG | - | chr6_3:28656255-28656274 | Msa0946710:intron | 15.0% |
| !!! | AATTTTATTGTATTTTTGAG+GGG | - | chr6_3:28656344-28656363 | Msa0946710:intron | 15.0% |
| !!! | TATATTATACTAACTTTTCA+AGG | - | chr6_3:28656520-28656539 | Msa0946710:intron | 15.0% |
| !! | CCTCAAAAATAAAATAAAAA+CGG | - | chr6_3:28656559-28656578 | Msa0946710:intron | 15.0% |
| !! | AACATAATTATATCTATGTA+TGG | + | chr6_3:28656600-28656619 | None:intergenic | 15.0% |
| !! | CAATAAAACACAAAATTATA+TGG | - | chr6_3:28656734-28656753 | Msa0946710:intron | 15.0% |
| !!! | AAAAGTAGTTTATATTTTCT+TGG | + | chr6_3:28656764-28656783 | None:intergenic | 15.0% |
| !! | ATATATATATATTTCTCTCA+TGG | + | chr6_3:28656826-28656845 | None:intergenic | 15.0% |
| !! | CGTTAATTATATTTAATTAC+AGG | - | chr6_3:28657119-28657138 | Msa0946710:intron | 15.0% |
| !! | TGTTTAATATGTAAAGATAT+TGG | - | chr6_3:28658012-28658031 | Msa0946710:five_prime_UTR | 15.0% |
| !! | GTTTAATATGTAAAGATATT+GGG | - | chr6_3:28658013-28658032 | Msa0946710:five_prime_UTR | 15.0% |
| !!! | CATATTTAAATACTTTTCAT+TGG | - | chr6_3:28658037-28658056 | Msa0946710:five_prime_UTR | 15.0% |
| !!! | TTCTTCTTATGTTTTTTTAG+AGG | - | chr6_3:28655298-28655317 | Msa0946710:intron | 20.0% |
| !!! | ATTCTTTTATGATTTATCCT+TGG | - | chr6_3:28655513-28655532 | Msa0946710:intron | 20.0% |
| !!! | ATTCTTTTATGATTTATCCT+TGG | - | chr6_3:28655513-28655532 | Msa0946710:intron | 20.0% |
| !!! | CTACGAATATTATTCTTTTA+TGG | - | chr6_3:28655703-28655722 | Msa0946710:intron | 20.0% |
| !! | AAGCATAAATTGAACAAATT+TGG | + | chr6_3:28655913-28655932 | None:intergenic | 20.0% |
| !!! | GTTTTTCAACAATTTTTTAC+AGG | - | chr6_3:28655943-28655962 | Msa0946710:intron | 20.0% |
| !! | GTGTTAAGAATGTTATTAAA+AGG | - | chr6_3:28655967-28655986 | Msa0946710:intron | 20.0% |
| !!! | ATTTTTACTCAATTATTGTG+TGG | + | chr6_3:28656410-28656429 | None:intergenic | 20.0% |
| !!! | CCGTTTTTATTTTATTTTTG+AGG | + | chr6_3:28656562-28656581 | None:intergenic | 20.0% |
| !!! | TATATATATATACGCGTTTT+TGG | - | chr6_3:28656839-28656858 | Msa0946710:intron | 20.0% |
| !! | TAAACAACATCATTAACAAT+CGG | + | chr6_3:28656868-28656887 | None:intergenic | 20.0% |
| !! | CATATTCATATCTGATAAAA+AGG | + | chr6_3:28657403-28657422 | None:intergenic | 20.0% |
| !!! | CTTTTTATCAGATATGAATA+TGG | - | chr6_3:28657401-28657420 | Msa0946710:intron | 20.0% |
| !! | TATTACTCATTTATATAAGC+AGG | + | chr6_3:28657979-28657998 | None:intergenic | 20.0% |
| !!! | TTTTGTTTTGAGAAGAAGAA+AGG | + | chr6_3:28654248-28654267 | None:intergenic | 25.0% |
| ! | GAAACAAAACCAATAAGATT+TGG | - | chr6_3:28654370-28654389 | Msa0946710:three_prime_UTR | 25.0% |
| !!! | TTGTTGCTTTTTCTAATGAA+CGG | + | chr6_3:28654480-28654499 | None:intergenic | 25.0% |
| !!! | TGAACCATATATTTTTGCAT+GGG | + | chr6_3:28654530-28654549 | None:intergenic | 25.0% |
| !!! | ATGAACCATATATTTTTGCA+TGG | + | chr6_3:28654531-28654550 | None:intergenic | 25.0% |
| !!! | TGAAACATTTTTTCAGTTCT+AGG | + | chr6_3:28654769-28654788 | None:intergenic | 25.0% |
| ! | CAAAAATTGAAACATCAGAA+AGG | + | chr6_3:28654847-28654866 | None:intergenic | 25.0% |
| ! | AAGAACCAAAAACTACAAAA+TGG | - | chr6_3:28655082-28655101 | Msa0946710:CDS | 25.0% |
| ! | AGAACCAAAAACTACAAAAT+GGG | - | chr6_3:28655083-28655102 | Msa0946710:CDS | 25.0% |
| ! | TATGCAAATCATCACAAAAA+TGG | - | chr6_3:28655126-28655145 | Msa0946710:CDS | 25.0% |
| ! | ATGCAAATCATCACAAAAAT+GGG | - | chr6_3:28655127-28655146 | Msa0946710:CDS | 25.0% |
| !!! | TCTAATTTTTTGTTTCTCCA+AGG | + | chr6_3:28655533-28655552 | None:intergenic | 25.0% |
| !!! | CTAAATTTTTTGTTTCTCCA+AGG | + | chr6_3:28655633-28655652 | None:intergenic | 25.0% |
| !! | ATTCTTTTATGGTTTATCCT+TGG | - | chr6_3:28655714-28655733 | Msa0946710:intron | 25.0% |
| !! | TGAAGGGTTAATTATGTTTT+TGG | - | chr6_3:28655783-28655802 | Msa0946710:intron | 25.0% |
| ! | TTTATTGTCAAGAAACAATC+TGG | + | chr6_3:28656721-28656740 | None:intergenic | 25.0% |
| !! | TCAATTAGAAAAGTTCTAAC+AGG | - | chr6_3:28657089-28657108 | Msa0946710:intron | 25.0% |
| !! | ATTGCATTAGAGCAATTTTA+TGG | - | chr6_3:28657247-28657266 | Msa0946710:intron | 25.0% |
| !! | TTGCATTAGAGCAATTTTAT+GGG | - | chr6_3:28657248-28657267 | Msa0946710:intron | 25.0% |
| !!! | ATTGTATTTTGGTTTGTGTA+AGG | + | chr6_3:28657307-28657326 | None:intergenic | 25.0% |
| ! | AATATGGATATAACAGCAAT+AGG | - | chr6_3:28657417-28657436 | Msa0946710:intron | 25.0% |
| ! | ATATGGATATAACAGCAATA+GGG | - | chr6_3:28657418-28657437 | Msa0946710:intron | 25.0% |
| !! | TATTTTGTTGAACTTTCTAC+TGG | - | chr6_3:28657522-28657541 | Msa0946710:CDS | 25.0% |
| !!! | TTTTTAACTATAACCTCACT+TGG | + | chr6_3:28657561-28657580 | None:intergenic | 25.0% |
| ! | ATTGTAAAGCTGACAATAAA+TGG | - | chr6_3:28657649-28657668 | Msa0946710:CDS | 25.0% |
| ! | TTGTAAAGCTGACAATAAAT+GGG | - | chr6_3:28657650-28657669 | Msa0946710:CDS | 25.0% |
| ! | ATAAATGGGCAATTATTAGT+AGG | - | chr6_3:28657664-28657683 | Msa0946710:CDS | 25.0% |
| ! | CTATATAATGACTCTTTCTT+AGG | - | chr6_3:28657862-28657881 | Msa0946710:CDS | 25.0% |
| ! | GTAATAAAATGCGTAAAACT+TGG | - | chr6_3:28657911-28657930 | Msa0946710:CDS | 25.0% |
| ! | GTAATAAAATGTGTACTACT+TGG | - | chr6_3:28657952-28657971 | Msa0946710:exon | 25.0% |
| ! | CATTATTAGTGTATTGTCAT+TGG | - | chr6_3:28658063-28658082 | Msa0946710:five_prime_UTR | 25.0% |
| !! | CATATATTTTTGCATGGGAA+GGG | + | chr6_3:28654525-28654544 | None:intergenic | 30.0% |
| ! | AAACCAGTTGCTTTAAATGT+TGG | - | chr6_3:28654667-28654686 | Msa0946710:CDS | 30.0% |
| !! | ATCTAATGGATTGCAGTATA+TGG | - | chr6_3:28654720-28654739 | Msa0946710:CDS | 30.0% |
| AGTATATGGATTCTACTATG+TGG | - | chr6_3:28654734-28654753 | Msa0946710:CDS | 30.0% | |
| ATATCTGATCCTAATCTCTT+TGG | - | chr6_3:28654793-28654812 | Msa0946710:CDS | 30.0% | |
| AATTGAAACATCAGAAAGGA+TGG | + | chr6_3:28654843-28654862 | None:intergenic | 30.0% | |
| ! | TGAACCCATTTTGTAGTTTT+TGG | + | chr6_3:28655090-28655109 | None:intergenic | 30.0% |
| TGCAAATCATCACAAAAATG+GGG | - | chr6_3:28655128-28655147 | Msa0946710:CDS | 30.0% | |
| ! | CATGGACTAAAACTAAAATG+AGG | - | chr6_3:28655211-28655230 | Msa0946710:intron | 30.0% |
| TAAAATGAGGCATATTTGCA+GGG | - | chr6_3:28655224-28655243 | Msa0946710:intron | 30.0% | |
| !!! | CTAAGTTTTTTGTTTCTCCA+AGG | + | chr6_3:28655734-28655753 | None:intergenic | 30.0% |
| AAGTAAGGACTAAACTTACA+AGG | + | chr6_3:28655826-28655845 | None:intergenic | 30.0% | |
| GAACAAATTTGGATTGAGTA+AGG | + | chr6_3:28655902-28655921 | None:intergenic | 30.0% | |
| !!! | TTTTGCGATATTTTTTTCGG+AGG | + | chr6_3:28655994-28656013 | None:intergenic | 30.0% |
| ! | CAAGTTTAGAACACTATGAA+AGG | + | chr6_3:28656129-28656148 | None:intergenic | 30.0% |
| AAGTAAGGACTAAACTTAGA+AGG | - | chr6_3:28656270-28656289 | Msa0946710:intron | 30.0% | |
| ! | TTAGAAGGTCGCAATTTTAT+AGG | - | chr6_3:28656285-28656304 | Msa0946710:intron | 30.0% |
| ! | TAGAAGGTCGCAATTTTATA+GGG | - | chr6_3:28656286-28656305 | Msa0946710:intron | 30.0% |
| !! | TTTATTGTATTTTTGAGGGG+AGG | - | chr6_3:28656347-28656366 | Msa0946710:intron | 30.0% |
| !! | TTATTGTATTTTTGAGGGGA+GGG | - | chr6_3:28656348-28656367 | Msa0946710:intron | 30.0% |
| ! | TTAATGATGTTGTTTAAGCC+AGG | - | chr6_3:28656872-28656891 | Msa0946710:intron | 30.0% |
| ! | ACTTTGATCCATTGACTATT+TGG | - | chr6_3:28656921-28656940 | Msa0946710:intron | 30.0% |
| AAACCAAAATACAATGAAGC+AGG | - | chr6_3:28657312-28657331 | Msa0946710:intron | 30.0% | |
| TTGTGAAGCTTCTTTGATAT+GGG | - | chr6_3:28657347-28657366 | Msa0946710:intron | 30.0% | |
| TATGGATATAACAGCAATAG+GGG | - | chr6_3:28657419-28657438 | Msa0946710:intron | 30.0% | |
| TATACCTAATGAAGAGAATG+AGG | - | chr6_3:28657473-28657492 | Msa0946710:intron | 30.0% | |
| TATTAGTAGGAAAACTCAAG+TGG | - | chr6_3:28657677-28657696 | Msa0946710:CDS | 30.0% | |
| GTGAAAGCTTCAATTGATAA+TGG | - | chr6_3:28657711-28657730 | Msa0946710:CDS | 30.0% | |
| ACTCTTTCTTAGGTAACTAA+CGG | - | chr6_3:28657872-28657891 | Msa0946710:CDS | 30.0% | |
| TATTACTCCTTTATGCAAGT+TGG | + | chr6_3:28657938-28657957 | None:intergenic | 30.0% | |
| GTGTGGTTATACTAAGGATT+GGG | + | chr6_3:28654301-28654320 | None:intergenic | 35.0% | |
| AGTGTGGTTATACTAAGGAT+TGG | + | chr6_3:28654302-28654321 | None:intergenic | 35.0% | |
| ACTTCAGTGTGGTTATACTA+AGG | + | chr6_3:28654307-28654326 | None:intergenic | 35.0% | |
| TGGAAAAGTAAACTTCAGTG+TGG | + | chr6_3:28654318-28654337 | None:intergenic | 35.0% | |
| ! | ATTCTTTCTGGAAGAGAGAT+TGG | + | chr6_3:28654338-28654357 | None:intergenic | 35.0% |
| TCTCTCTTCCAGAAAGAATA+TGG | - | chr6_3:28654339-28654358 | Msa0946710:three_prime_UTR | 35.0% | |
| TTCATGAGCCATATTCTTTC+TGG | + | chr6_3:28654350-28654369 | None:intergenic | 35.0% | |
| CCAAGGATTCCAAATCTTAT+TGG | + | chr6_3:28654382-28654401 | None:intergenic | 35.0% | |
| ! | CCAATAAGATTTGGAATCCT+TGG | - | chr6_3:28654379-28654398 | Msa0946710:three_prime_UTR | 35.0% |
| !! | CCATATATTTTTGCATGGGA+AGG | + | chr6_3:28654526-28654545 | None:intergenic | 35.0% |
| CCTTCCCATGCAAAAATATA+TGG | - | chr6_3:28654523-28654542 | Msa0946710:three_prime_UTR | 35.0% | |
| ! | TCTCCAACATTTAAAGCAAC+TGG | + | chr6_3:28654673-28654692 | None:intergenic | 35.0% |
| ! | TGGAGAACTTGACAAGATTT+TGG | - | chr6_3:28654687-28654706 | Msa0946710:CDS | 35.0% |
| TTGGAAGCTTGTGAATCTAA+TGG | - | chr6_3:28654706-28654725 | Msa0946710:CDS | 35.0% | |
| ! | GATGAATCATACCGATTGAA+GGG | + | chr6_3:28654821-28654840 | None:intergenic | 35.0% |
| CAAAACGAGACATATTTGCA+GGG | + | chr6_3:28654959-28654978 | None:intergenic | 35.0% | |
| !!! | TTTTTAAAATAGGCCCTTGC+AGG | - | chr6_3:28655031-28655050 | Msa0946710:CDS | 35.0% |
| !!! | TTTTAAAATAGGCCCTTGCA+GGG | - | chr6_3:28655032-28655051 | Msa0946710:CDS | 35.0% |
| !! | TTTTAAAAAGGTCCCTGCAA+GGG | + | chr6_3:28655047-28655066 | None:intergenic | 35.0% |
| !! | TTTTTAAAAAGGTCCCTGCA+AGG | + | chr6_3:28655048-28655067 | None:intergenic | 35.0% |
| CTAAAATGAGGCATATTTGC+AGG | - | chr6_3:28655223-28655242 | Msa0946710:intron | 35.0% | |
| ! | TACAAGGTCGCAATTTTGTA+GGG | + | chr6_3:28655810-28655829 | None:intergenic | 35.0% |
| ! | TTACAAGGTCGCAATTTTGT+AGG | + | chr6_3:28655811-28655830 | None:intergenic | 35.0% |
| !!! | GAGTGCAGCAATTTTTTGTA+GGG | + | chr6_3:28655870-28655889 | None:intergenic | 35.0% |
| !!! | TGAGTGCAGCAATTTTTTGT+AGG | + | chr6_3:28655871-28655890 | None:intergenic | 35.0% |
| ACTATGAGCCAAATAGTCAA+TGG | + | chr6_3:28656932-28656951 | None:intergenic | 35.0% | |
| TTGGCTCATAGTTTGATTGT+TGG | - | chr6_3:28656940-28656959 | Msa0946710:intron | 35.0% | |
| !! | TTTGTTTTCGCAATTGTGCT+TGG | - | chr6_3:28656990-28657009 | Msa0946710:intron | 35.0% |
| TTGTGCTTGGAGAATATCAT+TGG | - | chr6_3:28657003-28657022 | Msa0946710:intron | 35.0% | |
| ! | ACATGCTACATTTTCTTACC+CGG | - | chr6_3:28657143-28657162 | Msa0946710:intron | 35.0% |
| !!! | TGTAAGGCTTTTGCTGTTTT+GGG | + | chr6_3:28657291-28657310 | None:intergenic | 35.0% |
| ! | ACACCTGCTTCATTGTATTT+TGG | + | chr6_3:28657318-28657337 | None:intergenic | 35.0% |
| CTTGTGAAGCTTCTTTGATA+TGG | - | chr6_3:28657346-28657365 | Msa0946710:intron | 35.0% | |
| AAAGCCTCATTCTCTTCATT+AGG | + | chr6_3:28657480-28657499 | None:intergenic | 35.0% | |
| TTGTTGAACTTTCTACTGGT+TGG | - | chr6_3:28657526-28657545 | Msa0946710:CDS | 35.0% | |
| ! | ACTATAACCTCACTTGGTTT+TGG | + | chr6_3:28657555-28657574 | None:intergenic | 35.0% |
| !! | TATTCCACAAGAAGCACTTA+TGG | - | chr6_3:28657584-28657603 | Msa0946710:CDS | 35.0% |
| TTAACCATAAGTGCTTCTTG+TGG | + | chr6_3:28657591-28657610 | None:intergenic | 35.0% | |
| !! | ACAAGAAGCACTTATGGTTA+AGG | - | chr6_3:28657590-28657609 | Msa0946710:CDS | 35.0% |
| CTCTAATACTCAATAGGAAC+AGG | + | chr6_3:28657744-28657763 | None:intergenic | 35.0% | |
| GAGATGCTCTAATACTCAAT+AGG | + | chr6_3:28657750-28657769 | None:intergenic | 35.0% | |
| ! | AGTATTAGAGCATCTCCAAT+GGG | - | chr6_3:28657754-28657773 | Msa0946710:CDS | 35.0% |
| TCCAATAGAGGATACTTAAC+GGG | + | chr6_3:28657806-28657825 | None:intergenic | 35.0% | |
| CTCCAATAGAGGATACTTAA+CGG | + | chr6_3:28657807-28657826 | None:intergenic | 35.0% | |
| ! | ATTTTTCCTTCCTCCAATAG+AGG | + | chr6_3:28657818-28657837 | None:intergenic | 35.0% |
| GGAAAAATGAGTTCCTGTTA+AGG | - | chr6_3:28657830-28657849 | Msa0946710:CDS | 35.0% | |
| CTCTTTCTTAGGTAACTAAC+GGG | - | chr6_3:28657873-28657892 | Msa0946710:CDS | 35.0% | |
| TGGTTATACTAAGGATTGGG+TGG | + | chr6_3:28654298-28654317 | None:intergenic | 40.0% | |
| ATTGCGTAGAGAGTTGAGTT+TGG | + | chr6_3:28654451-28654470 | None:intergenic | 40.0% | |
| AACTCAACTCTCTACGCAAT+TGG | - | chr6_3:28654451-28654470 | Msa0946710:three_prime_UTR | 40.0% | |
| TGAAGGGAACCAAAGAGATT+AGG | + | chr6_3:28654805-28654824 | None:intergenic | 40.0% | |
| ! | TCTCTTTGGTTCCCTTCAAT+CGG | - | chr6_3:28654807-28654826 | Msa0946710:CDS | 40.0% |
| ! | GGATGAATCATACCGATTGA+AGG | + | chr6_3:28654822-28654841 | None:intergenic | 40.0% |
| CCAAAACGAGACATATTTGC+AGG | + | chr6_3:28654960-28654979 | None:intergenic | 40.0% | |
| ! | CCTGCAAATATGTCTCGTTT+TGG | - | chr6_3:28654957-28654976 | Msa0946710:CDS | 40.0% |
| ATCATCACAAAAATGGGGTC+AGG | - | chr6_3:28655133-28655152 | Msa0946710:CDS | 40.0% | |
| TCATCACAAAAATGGGGTCA+GGG | - | chr6_3:28655134-28655153 | Msa0946710:CDS | 40.0% | |
| ATGTCCTTTGCTAGGAAATC+TGG | + | chr6_3:28657174-28657193 | None:intergenic | 40.0% | |
| !!! | GTGTAAGGCTTTTGCTGTTT+TGG | + | chr6_3:28657292-28657311 | None:intergenic | 40.0% |
| ATAACAGCAATAGGGGCAAA+AGG | - | chr6_3:28657426-28657445 | Msa0946710:intron | 40.0% | |
| TAACAGCAATAGGGGCAAAA+GGG | - | chr6_3:28657427-28657446 | Msa0946710:intron | 40.0% | |
| TTGGAATCCAAAACCAAGTG+AGG | - | chr6_3:28657545-28657564 | Msa0946710:CDS | 40.0% | |
| ! | GGTTAAGGAATTTGCTCATC+TGG | - | chr6_3:28657605-28657624 | Msa0946710:CDS | 40.0% |
| ! | AAGGAATTTGCTCATCTGGT+TGG | - | chr6_3:28657609-28657628 | Msa0946710:CDS | 40.0% |
| ! | AATTTGCTCATCTGGTTGGT+GGG | - | chr6_3:28657613-28657632 | Msa0946710:CDS | 40.0% |
| !! | TGGTTGGTGGGATTAAGTAT+GGG | - | chr6_3:28657625-28657644 | Msa0946710:CDS | 40.0% |
| ! | GAGTATTAGAGCATCTCCAA+TGG | - | chr6_3:28657753-28657772 | Msa0946710:CDS | 40.0% |
| ! | GTATTAGAGCATCTCCAATG+GGG | - | chr6_3:28657755-28657774 | Msa0946710:CDS | 40.0% |
| ! | TATTAGAGCATCTCCAATGG+GGG | - | chr6_3:28657756-28657775 | Msa0946710:CDS | 40.0% |
| CCAATAGAGGATACTTAACG+GGG | + | chr6_3:28657805-28657824 | None:intergenic | 40.0% | |
| CGTTAAGTATCCTCTATTGG+AGG | - | chr6_3:28657805-28657824 | Msa0946710:CDS | 40.0% | |
| AAGTATCCTCTATTGGAGGA+AGG | - | chr6_3:28657809-28657828 | Msa0946710:CDS | 40.0% | |
| ATAGTTGCTCGTTCCTTAAC+AGG | + | chr6_3:28657846-28657865 | None:intergenic | 40.0% | |
| ACTTGGTCCAACTTGCATAA+AGG | - | chr6_3:28657928-28657947 | Msa0946710:CDS | 40.0% | |
| AAGGATTGGGTGGCTATTAG+AGG | + | chr6_3:28654288-28654307 | None:intergenic | 45.0% | |
| TAGCTATCTCTGCACAACCA+AGG | + | chr6_3:28654399-28654418 | None:intergenic | 45.0% | |
| ! | TGAGTTTGGTGAGAGGGTTA+TGG | + | chr6_3:28654437-28654456 | None:intergenic | 45.0% |
| ! | GAGAGTTGAGTTTGGTGAGA+GGG | + | chr6_3:28654443-28654462 | None:intergenic | 45.0% |
| ! | AGAGAGTTGAGTTTGGTGAG+AGG | + | chr6_3:28654444-28654463 | None:intergenic | 45.0% |
| TGCATGGGAAGGGAAATTGT+TGG | + | chr6_3:28654515-28654534 | None:intergenic | 45.0% | |
| GACGTCCGGATCATCTAAAA+CGG | + | chr6_3:28654560-28654579 | None:intergenic | 45.0% | |
| TTTGTGTCATGCTACGTTCC+TGG | + | chr6_3:28656893-28656912 | None:intergenic | 45.0% | |
| ! | TTGTTGGTCTAGCTACCTCA+AGG | - | chr6_3:28656956-28656975 | Msa0946710:intron | 45.0% |
| ! | TGTTGGTCTAGCTACCTCAA+GGG | - | chr6_3:28656957-28656976 | Msa0946710:intron | 45.0% |
| GAGTCCAGATTTCCTAGCAA+AGG | - | chr6_3:28657167-28657186 | Msa0946710:intron | 45.0% | |
| TCACACGAATGTCCTTTGCT+AGG | + | chr6_3:28657182-28657201 | None:intergenic | 45.0% | |
| AAGCCAGATCTTGATGCACT+AGG | - | chr6_3:28657201-28657220 | Msa0946710:intron | 45.0% | |
| GTTCCTAGTGCATCAAGATC+TGG | + | chr6_3:28657207-28657226 | None:intergenic | 45.0% | |
| CTTGATGCACTAGGAACACT+AGG | - | chr6_3:28657210-28657229 | Msa0946710:intron | 45.0% | |
| ! | GAATTTGCTCATCTGGTTGG+TGG | - | chr6_3:28657612-28657631 | Msa0946710:CDS | 45.0% |
| !! | CTGGTTGGTGGGATTAAGTA+TGG | - | chr6_3:28657624-28657643 | Msa0946710:CDS | 45.0% |
| ! | ATTAGAGCATCTCCAATGGG+GGG | - | chr6_3:28657757-28657776 | Msa0946710:CDS | 45.0% |
| GGAGTGGTCCTTGTTAAGTA+AGG | + | chr6_3:28657784-28657803 | None:intergenic | 45.0% | |
| CCCCGTTAAGTATCCTCTAT+TGG | - | chr6_3:28657802-28657821 | Msa0946710:CDS | 45.0% | |
| !!! | AAATTTTTGTTTTTTAAAAT+AGG | - | chr6_3:28655021-28655040 | Msa0946710:CDS | 5.0% |
| !!! | AAATTTATTTTATTAAATGA+AGG | - | chr6_3:28655766-28655785 | Msa0946710:intron | 5.0% |
| !!! | AATTTATTTTATTAAATGAA+GGG | - | chr6_3:28655767-28655786 | Msa0946710:intron | 5.0% |
| !! | TTAAAAAATTTAATAGTTTA+AGG | - | chr6_3:28656163-28656182 | Msa0946710:intron | 5.0% |
| !! | CGACGCCGTTTTAGATGATC+CGG | - | chr6_3:28654552-28654571 | Msa0946710:exon | 50.0% |
| ! | CAGTGAAGGTGTAAGCTGGT+CGG | + | chr6_3:28654604-28654623 | None:intergenic | 50.0% |
| GACCAGCTTACACCTTCACT+GGG | - | chr6_3:28654603-28654622 | Msa0946710:CDS | 50.0% | |
| CAGCAAAAACTGCCCAGTGA+AGG | + | chr6_3:28654618-28654637 | None:intergenic | 50.0% | |
| TAGCTACCTCAAGGGATCGA+GGG | - | chr6_3:28656965-28656984 | Msa0946710:intron | 50.0% | |
| CTAGGAAATCTGGACTCACC+GGG | + | chr6_3:28657164-28657183 | None:intergenic | 50.0% | |
| GCTAGGAAATCTGGACTCAC+CGG | + | chr6_3:28657165-28657184 | None:intergenic | 50.0% | |
| CTAGGAACACTAGGTGACAC+TGG | - | chr6_3:28657219-28657238 | Msa0946710:intron | 50.0% | |
| GAACACTAGGTGACACTGGT+TGG | - | chr6_3:28657223-28657242 | Msa0946710:intron | 50.0% | |
| GTTAAGTAAGGACCCCCCAT+TGG | + | chr6_3:28657772-28657791 | None:intergenic | 50.0% | |
| TGGGGGGTCCTTACTTAACA+AGG | - | chr6_3:28657773-28657792 | Msa0946710:CDS | 50.0% | |
| AGAGGATACTTAACGGGGAG+TGG | + | chr6_3:28657800-28657819 | None:intergenic | 50.0% | |
| !! | ATGTAGACGGCATCGACGTC+CGG | + | chr6_3:28654574-28654593 | None:intergenic | 55.0% |
| GGTCGGAAGTGGCATGTAGA+CGG | + | chr6_3:28654587-28654606 | None:intergenic | 55.0% | |
| AGGTGTAAGCTGGTCGGAAG+TGG | + | chr6_3:28654598-28654617 | None:intergenic | 55.0% | |
| CGACCAGCTTACACCTTCAC+TGG | - | chr6_3:28654602-28654621 | Msa0946710:CDS | 55.0% | |
| ! | TGCCCAGTGAAGGTGTAAGC+TGG | + | chr6_3:28654608-28654627 | None:intergenic | 55.0% |
| CTAGCTACCTCAAGGGATCG+AGG | - | chr6_3:28656964-28656983 | Msa0946710:intron | 55.0% | |
| AGCTACCTCAAGGGATCGAG+GGG | - | chr6_3:28656966-28656985 | Msa0946710:intron | 55.0% | |
| CAAATCCCCTCGATCCCTTG+AGG | + | chr6_3:28656974-28656993 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 28654219 | 28658107 | 28654219 | ID=Msa0946710;Name=Msa0946710 |
| chr6_3 | mRNA | 28654219 | 28658107 | 28654219 | ID=Msa0946710-mRNA-1;Parent=Msa0946710;Name=Msa0946710-mRNA-1;_AED=0.01;_eAED=0.01;_QI=139|1|1|1|1|1|2|346|363 |
| chr6_3 | exon | 28654219 | 28655185 | 28654219 | ID=Msa0946710-mRNA-1:exon:7663;Parent=Msa0946710-mRNA-1 |
| chr6_3 | exon | 28657498 | 28658107 | 28657498 | ID=Msa0946710-mRNA-1:exon:7662;Parent=Msa0946710-mRNA-1 |
| chr6_3 | five_prime_UTR | 28657969 | 28658107 | 28657969 | ID=Msa0946710-mRNA-1:five_prime_utr;Parent=Msa0946710-mRNA-1 |
| chr6_3 | CDS | 28657498 | 28657968 | 28657498 | ID=Msa0946710-mRNA-1:cds;Parent=Msa0946710-mRNA-1 |
| chr6_3 | CDS | 28654565 | 28655185 | 28654565 | ID=Msa0946710-mRNA-1:cds;Parent=Msa0946710-mRNA-1 |
| chr6_3 | three_prime_UTR | 28654219 | 28654564 | 28654219 | ID=Msa0946710-mRNA-1:three_prime_utr;Parent=Msa0946710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
