AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0909620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0909620 MtrunA17_Chr6g0464971 94.215 363 21 0 1 363 1 363 0.0 718
Msa0909620 MtrunA17_Chr6g0464961 88.430 363 42 0 1 363 23 385 0.0 653
Msa0909620 MtrunA17_Chr6g0465111 62.011 358 136 0 5 362 3 360 2.15e-172 484
Msa0909620 MtrunA17_Chr6g0465121 60.335 358 137 1 5 362 16 368 2.43e-165 466
Msa0909620 MtrunA17_Chr1g0200981 61.864 354 135 0 9 362 6 359 1.70e-162 459
Msa0909620 MtrunA17_Chr6g0477771 53.571 364 164 3 1 361 1 362 4.68e-140 402
Msa0909620 MtrunA17_Chr3g0110001 53.463 361 164 2 5 361 3 363 2.46e-137 395
Msa0909620 MtrunA17_Chr6g0464931 88.182 110 13 0 1 110 1 110 4.09e-57 182
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0909620 AT4G09670.1 57.790 353 149 0 9 361 7 359 1.55e-155 441
Msa0909620 AT1G34200.1 54.545 352 148 2 9 359 7 347 1.79e-135 390
Msa0909620 AT1G66130.1 43.646 362 195 6 5 359 3 362 3.67e-103 308

Find 103 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATGAGCCATATTCTTTC+TGG 0.137429 6_2:-12604515 None:intergenic
CCAAGGATTCCAAATCTTAT+TGG 0.177750 6_2:-12604547 None:intergenic
ACACCTGCTTCATTGTATTT+TGG 0.185223 6_2:-12606405 None:intergenic
TGTTTAATATGTAAAGATAT+TGG 0.186002 6_2:+12607102 Msa0909620:three_prime_UTR
TTTAATAAAAGTACATATTA+AGG 0.217593 6_2:-12607187 None:intergenic
CACCTTCACTGGGCAGTTCT+TGG 0.230377 6_2:+12604781 Msa0909620:CDS
CATATTCATATCTGATAAAA+AGG 0.244809 6_2:-12606490 None:intergenic
ATTGTAAAGCTGACAATAAA+TGG 0.249044 6_2:+12606739 Msa0909620:CDS
CTATATAATGACTCTTTCTT+AGG 0.250658 6_2:+12606951 Msa0909620:three_prime_UTR
TGGAGAACTTGACAAGATTT+TGG 0.253525 6_2:+12604855 Msa0909620:CDS
ACTATAACCTCACTTGGTTT+TGG 0.256553 6_2:-12606642 None:intergenic
ATATCTGATGCTAATCTCTT+TGG 0.262383 6_2:+12604961 Msa0909620:CDS
ATAGTTGCTCGTTCCTTAAC+AGG 0.275405 6_2:-12606932 None:intergenic
GTTTAATATGTAAAGATATT+GGG 0.295697 6_2:+12607103 Msa0909620:three_prime_UTR
CTTGTGAAGCTTCTTTGATA+TGG 0.295852 6_2:+12606436 Msa0909620:CDS
AAGTATATAACAACTAAATT+TGG 0.305533 6_2:-12604388 None:intergenic
CCAATAAGATTTGGAATCCT+TGG 0.324504 6_2:+12604547 Msa0909620:CDS
CTGGTTGGTGGGATTAAGTA+TGG 0.329892 6_2:+12606714 Msa0909620:CDS
AATATGGATATAACAGCAAT+AGG 0.330557 6_2:+12606507 Msa0909620:CDS
GGTTAAGGAATTTGCTCATC+TGG 0.331077 6_2:+12606695 Msa0909620:CDS
ATCTAATAGATTGCAGTATA+TGG 0.333755 6_2:+12604888 Msa0909620:CDS
ATTCTTTCTGGAAGAGAGAT+TGG 0.339778 6_2:-12604503 None:intergenic
TCTCTCTTCCAGAAAGAATA+TGG 0.344669 6_2:+12604507 Msa0909620:exon
GAAACAAAACCAATAAGATT+TGG 0.345157 6_2:+12604538 Msa0909620:CDS
GAGAGTTGAGTTTGGTGAGA+GGG 0.352301 6_2:-12604608 None:intergenic
CCCCGTTAAGTATCCTCTAT+TGG 0.356343 6_2:+12606891 Msa0909620:three_prime_UTR
ATGTCCTTTGCTAGGAAATC+TGG 0.362493 6_2:-12606261 None:intergenic
CATTATTAGTGTATTGTCAT+TGG 0.369644 6_2:+12607153 Msa0909620:three_prime_UTR
TGCATGGGAAGGGAAATTAT+TGG 0.373095 6_2:-12604680 None:intergenic
TCTCCAACATTTAAAGCAAC+TGG 0.374707 6_2:-12604838 None:intergenic
TATTCCACAAGAAGCACTTA+TGG 0.376037 6_2:+12606674 Msa0909620:CDS
AACTCAACTCTCTATGCAAT+TGG 0.376908 6_2:+12604619 Msa0909620:CDS
CGACTAGCTTACACCTTCAC+TGG 0.390665 6_2:+12604770 Msa0909620:CDS
AAAGCCTCATTCTCTTCATT+AGG 0.391917 6_2:-12606567 None:intergenic
ACAAGAAGCACTTATGGTTA+AGG 0.393073 6_2:+12606680 Msa0909620:CDS
AAGGATTGGGTGGCTATTAG+AGG 0.393184 6_2:-12604453 None:intergenic
GTGAAAGCTTCAATTGATAA+TGG 0.396592 6_2:+12606801 Msa0909620:CDS
TGAGTTTGGTGAGAGGGTTA+TGG 0.410178 6_2:-12604602 None:intergenic
TCCAATAGAGGATACTTAAC+GGG 0.413630 6_2:-12606892 None:intergenic
AAACCAGTTGCTTTAAATGT+TGG 0.419578 6_2:+12604835 Msa0909620:CDS
ACTTGGTCCAACTTGCATAA+AGG 0.422160 6_2:+12607018 Msa0909620:three_prime_UTR
GAGATGCTCTAATACTCAAT+AGG 0.424576 6_2:-12606837 None:intergenic
ATAACAGCAATAGGGGCAAA+AGG 0.425672 6_2:+12606516 Msa0909620:CDS
CTCTAATACTCAATAGGAAC+AGG 0.430101 6_2:-12606831 None:intergenic
TATTACTCCTTTATGCAAGT+TGG 0.438048 6_2:-12607025 None:intergenic
TCTCTTTGGTTCCCTTCAAT+CGG 0.438224 6_2:+12604975 Msa0909620:CDS
ATATGGATATAACAGCAATA+GGG 0.448214 6_2:+12606508 Msa0909620:CDS
CTCCAATAGAGGATACTTAA+CGG 0.448905 6_2:-12606893 None:intergenic
ATAAATGGGCAATTATTAGT+AGG 0.455056 6_2:+12606754 Msa0909620:CDS
ATTGCATAGAGAGTTGAGTT+TGG 0.455492 6_2:-12604616 None:intergenic
TTGTGAAGCTTCTTTGATAT+GGG 0.455911 6_2:+12606437 Msa0909620:CDS
GTGTGGTTATACTAAGGATT+GGG 0.463429 6_2:-12604466 None:intergenic
GTTCCTAGTGCATCAAGATC+TGG 0.470430 6_2:-12606294 None:intergenic
TTGTAAAGCTGACAATAAAT+GGG 0.474224 6_2:+12606740 Msa0909620:CDS
TATTACTCATTTATATAAGC+AGG 0.478273 6_2:-12607066 None:intergenic
AGTGTGGTTATACTAAGGAT+TGG 0.479405 6_2:-12604467 None:intergenic
CTCTTTCTTAGGTAACTAAC+GGG 0.480897 6_2:+12606962 Msa0909620:three_prime_UTR
ACTTCAGTGTGGTTATACTA+AGG 0.481279 6_2:-12604472 None:intergenic
AGTATTAGAGCATCTCCAAT+GGG 0.494063 6_2:+12606844 Msa0909620:exon
GGATGAATCATACCGATTGA+AGG 0.499775 6_2:-12604987 None:intergenic
AAGGAATTTGCTCATCTGGT+TGG 0.501930 6_2:+12606699 Msa0909620:CDS
AATTTGCTCATCTGGTTGGT+GGG 0.506597 6_2:+12606703 Msa0909620:CDS
CTTGATGCACTAGGAACACT+AGG 0.518180 6_2:+12606300 Msa0909620:CDS
GTAATAAAATGCGTAAAACT+TGG 0.519190 6_2:+12607001 Msa0909620:three_prime_UTR
GAATTTGCTCATCTGGTTGG+TGG 0.520943 6_2:+12606702 Msa0909620:CDS
TTGTTGAACTTTCTACTGGT+TGG 0.522425 6_2:+12606616 Msa0909620:CDS
ATGTAGACAGCATCGACGTC+CGG 0.529451 6_2:-12604739 None:intergenic
GTAATAAAATGTGTACTACT+TGG 0.529499 6_2:+12607042 Msa0909620:three_prime_UTR
GGAGTGGTCCTTGTTAAGTA+AGG 0.533286 6_2:-12606870 None:intergenic
GCTAGGAAATCTGGACTCAC+CGG 0.540515 6_2:-12606252 None:intergenic
AGAGGATACTTAACGGGGAG+TGG 0.547127 6_2:-12606886 None:intergenic
AAACCAAAATACAATGAAGC+AGG 0.549712 6_2:+12606402 Msa0909620:CDS
CGTTAAGTATCCTCTATTGG+AGG 0.550849 6_2:+12606894 Msa0909620:three_prime_UTR
TAACAGCAATAGGGGCAAAA+GGG 0.550871 6_2:+12606517 Msa0909620:CDS
ACTCTTTCTTAGGTAACTAA+CGG 0.553585 6_2:+12606961 Msa0909620:three_prime_UTR
TTAACCATAAGTGCTTCTTG+TGG 0.562009 6_2:-12606678 None:intergenic
AGAGAGTTGAGTTTGGTGAG+AGG 0.562038 6_2:-12604609 None:intergenic
GATGAATCATACCGATTGAA+GGG 0.566141 6_2:-12604986 None:intergenic
AGGTGTAAGCTAGTCGGAAG+TGG 0.567203 6_2:-12604763 None:intergenic
TATACCTAATGAAGAGAATG+AGG 0.567350 6_2:+12606563 Msa0909620:CDS
GACGTCCGGATCATCTAAAA+CGG 0.571998 6_2:-12604725 None:intergenic
TCACACGAATGTCCTTTGCT+AGG 0.572854 6_2:-12606269 None:intergenic
CTAGGAAATCTGGACTCACC+GGG 0.573636 6_2:-12606251 None:intergenic
CACCAAGAACTGCCCAGTGA+AGG 0.575545 6_2:-12604783 None:intergenic
TATGGATATAACAGCAATAG+GGG 0.579131 6_2:+12606509 Msa0909620:CDS
GAGTATTAGAGCATCTCCAA+TGG 0.579422 6_2:+12606843 Msa0909620:exon
CTAGGAACACTAGGTGACAC+TGG 0.593492 6_2:+12606309 Msa0909620:CDS
TGGTTGGTGGGATTAAGTAT+GGG 0.605617 6_2:+12606715 Msa0909620:CDS
AAGTATCCTCTATTGGAGGA+AGG 0.607049 6_2:+12606898 Msa0909620:three_prime_UTR
AAGCCAGATCTTGATGCACT+AGG 0.607513 6_2:+12606291 Msa0909620:CDS
GAACACTAGGTGACACTGGT+TGG 0.608823 6_2:+12606313 Msa0909620:CDS
CAGTGAAGGTGTAAGCTAGT+CGG 0.613499 6_2:-12604769 None:intergenic
GACTAGCTTACACCTTCACT+GGG 0.618271 6_2:+12604771 Msa0909620:CDS
TATTAGTAGGAAAACTCAAG+TGG 0.621897 6_2:+12606767 Msa0909620:CDS
GAGTCCAGATTTCCTAGCAA+AGG 0.627187 6_2:+12606257 Msa0909620:CDS
TAGCTATCTCTGCACAACCA+AGG 0.627873 6_2:-12604564 None:intergenic
TGGTTATACTAAGGATTGGG+TGG 0.635340 6_2:-12604463 None:intergenic
TTGGAATCCAAAACCAAGTG+AGG 0.661767 6_2:+12606635 Msa0909620:CDS
CCAATAGAGGATACTTAACG+GGG 0.684716 6_2:-12606891 None:intergenic
TGGAAAAGTAAACTTCAGTG+TGG 0.697034 6_2:-12604483 None:intergenic
TATTAGAGCATCTCCAATGG+GGG 0.703661 6_2:+12606846 Msa0909620:exon
GTATTAGAGCATCTCCAATG+GGG 0.721305 6_2:+12606845 Msa0909620:exon
AGTATATGGATTCTACTATG+TGG 0.724513 6_2:+12604902 Msa0909620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAACAAAAAAAAAATATG+TGG + chr6_2:12606120-12606139 Msa0909620:intron 10.0%
!! AAGTATATAACAACTAAATT+TGG - chr6_2:12604391-12604410 None:intergenic 15.0%
!!! AAAACTAAAAAAGAGTTTTT+GGG - chr6_2:12605313-12605332 None:intergenic 15.0%
!!! AAAAACTAAAAAAGAGTTTT+TGG - chr6_2:12605314-12605333 None:intergenic 15.0%
!!! GTTTTGAATTTTTTAGTTTT+AGG + chr6_2:12605396-12605415 Msa0909620:intron 15.0%
!! AAAAAACTAAAACATGTAAA+AGG + chr6_2:12605423-12605442 Msa0909620:intron 15.0%
!! CCTCAAAAATAAAATAAAAA+CGG + chr6_2:12605655-12605674 Msa0909620:intron 15.0%
!! AACATAATTATATCTATGTA+TGG - chr6_2:12605696-12605715 None:intergenic 15.0%
!! CAATAAAACACAAAATTATA+TGG + chr6_2:12605832-12605851 Msa0909620:intron 15.0%
!!! AAAAGTAGTTTATATTTTCT+TGG - chr6_2:12605862-12605881 None:intergenic 15.0%
!! ATATATATATATTTCTCTCA+TGG - chr6_2:12605924-12605943 None:intergenic 15.0%
!! CGTTAATTATATTTAATTAC+AGG + chr6_2:12606209-12606228 Msa0909620:intron 15.0%
!!! TTTATTACTTTTTTAAACGT+GGG - chr6_2:12606989-12607008 None:intergenic 15.0%
!!! TTTTATTACTTTTTTAAACG+TGG - chr6_2:12606990-12607009 None:intergenic 15.0%
!! TGTTTAATATGTAAAGATAT+TGG + chr6_2:12607102-12607121 Msa0909620:three_prime_UTR 15.0%
!! GTTTAATATGTAAAGATATT+GGG + chr6_2:12607103-12607122 Msa0909620:three_prime_UTR 15.0%
!!! CATATTTAAATACTTTTCAT+TGG + chr6_2:12607127-12607146 Msa0909620:three_prime_UTR 15.0%
!!! TTCTTCTTATGTTTTTTTAG+AGG + chr6_2:12605075-12605094 Msa0909620:intron 20.0%
!!! GAAATCATTTTTTTTACAAG+AGG + chr6_2:12605140-12605159 Msa0909620:intron 20.0%
!!! AATCATTGTTGTAACTTTTA+AGG - chr6_2:12605179-12605198 None:intergenic 20.0%
!! TTAAAAGTTACAACAATGAT+TGG + chr6_2:12605178-12605197 Msa0909620:intron 20.0%
!! TAAAAGTTACAACAATGATT+GGG + chr6_2:12605179-12605198 Msa0909620:intron 20.0%
!! ATTCAAAACAGTTTACAAAA+CGG - chr6_2:12605385-12605404 None:intergenic 20.0%
!! AAACAAAAACTATTTCAAAC+AGG + chr6_2:12605487-12605506 Msa0909620:intron 20.0%
!!! CCGTTTTTATTTTATTTTTG+AGG - chr6_2:12605658-12605677 None:intergenic 20.0%
!!! TATATATATATACGCGTTTT+TGG + chr6_2:12605933-12605952 Msa0909620:intron 20.0%
!! TAAACAACATCATTAACAAT+CGG - chr6_2:12605962-12605981 None:intergenic 20.0%
!! CATATTCATATCTGATAAAA+AGG - chr6_2:12606493-12606512 None:intergenic 20.0%
!!! CTTTTTATCAGATATGAATA+TGG + chr6_2:12606491-12606510 Msa0909620:CDS 20.0%
!! TATTACTCATTTATATAAGC+AGG - chr6_2:12607069-12607088 None:intergenic 20.0%
!!! TTTTGTTTTGAGAAGAAGAA+AGG - chr6_2:12604416-12604435 None:intergenic 25.0%
! GAAACAAAACCAATAAGATT+TGG + chr6_2:12604538-12604557 Msa0909620:CDS 25.0%
!!! TTGTTGCTTTTTCTAATGAA+CGG - chr6_2:12604648-12604667 None:intergenic 25.0%
! ATCTAATAGATTGCAGTATA+TGG + chr6_2:12604888-12604907 Msa0909620:CDS 25.0%
!!! TGAAACATTTTTTCAGTTCT+AGG - chr6_2:12604937-12604956 None:intergenic 25.0%
! CAAAAATTGAAACATCAGAA+AGG - chr6_2:12605015-12605034 None:intergenic 25.0%
! TTTATTGTCAAGAAACAATC+TGG - chr6_2:12605819-12605838 None:intergenic 25.0%
!!! TCAATTAGAAAAGTACTTAC+AGG + chr6_2:12606179-12606198 Msa0909620:intron 25.0%
!! ATTGCATTAGAGCAATTTTA+TGG + chr6_2:12606337-12606356 Msa0909620:CDS 25.0%
!! TTGCATTAGAGCAATTTTAT+GGG + chr6_2:12606338-12606357 Msa0909620:CDS 25.0%
!!! ATTGTATTTTGGTTTGTGTA+AGG - chr6_2:12606397-12606416 None:intergenic 25.0%
! AATATGGATATAACAGCAAT+AGG + chr6_2:12606507-12606526 Msa0909620:CDS 25.0%
! ATATGGATATAACAGCAATA+GGG + chr6_2:12606508-12606527 Msa0909620:CDS 25.0%
!! TATTTTGTTGAACTTTCTAC+TGG + chr6_2:12606612-12606631 Msa0909620:CDS 25.0%
!!! TTTTTAACTATAACCTCACT+TGG - chr6_2:12606651-12606670 None:intergenic 25.0%
! ATTGTAAAGCTGACAATAAA+TGG + chr6_2:12606739-12606758 Msa0909620:CDS 25.0%
! TTGTAAAGCTGACAATAAAT+GGG + chr6_2:12606740-12606759 Msa0909620:CDS 25.0%
! ATAAATGGGCAATTATTAGT+AGG + chr6_2:12606754-12606773 Msa0909620:CDS 25.0%
! CTATATAATGACTCTTTCTT+AGG + chr6_2:12606951-12606970 Msa0909620:three_prime_UTR 25.0%
! GTAATAAAATGCGTAAAACT+TGG + chr6_2:12607001-12607020 Msa0909620:three_prime_UTR 25.0%
! GTAATAAAATGTGTACTACT+TGG + chr6_2:12607042-12607061 Msa0909620:three_prime_UTR 25.0%
! CATTATTAGTGTATTGTCAT+TGG + chr6_2:12607153-12607172 Msa0909620:three_prime_UTR 25.0%
!! TGAACCGTATATTTTTGCAT+GGG - chr6_2:12604698-12604717 None:intergenic 30.0%
!! ATGAACCGTATATTTTTGCA+TGG - chr6_2:12604699-12604718 None:intergenic 30.0%
! AAACCAGTTGCTTTAAATGT+TGG + chr6_2:12604835-12604854 Msa0909620:CDS 30.0%
AGTATATGGATTCTACTATG+TGG + chr6_2:12604902-12604921 Msa0909620:CDS 30.0%
ATATCTGATGCTAATCTCTT+TGG + chr6_2:12604961-12604980 Msa0909620:CDS 30.0%
AATTGAAACATCAGAAAGGA+TGG - chr6_2:12605011-12605030 None:intergenic 30.0%
! TTAATGATGTTGTTTAAGCC+AGG + chr6_2:12605966-12605985 Msa0909620:intron 30.0%
! ACTTTGATCCATTGACTATT+TGG + chr6_2:12606015-12606034 Msa0909620:intron 30.0%
AAACCAAAATACAATGAAGC+AGG + chr6_2:12606402-12606421 Msa0909620:CDS 30.0%
TTGTGAAGCTTCTTTGATAT+GGG + chr6_2:12606437-12606456 Msa0909620:CDS 30.0%
TATGGATATAACAGCAATAG+GGG + chr6_2:12606509-12606528 Msa0909620:CDS 30.0%
TATACCTAATGAAGAGAATG+AGG + chr6_2:12606563-12606582 Msa0909620:CDS 30.0%
TATTAGTAGGAAAACTCAAG+TGG + chr6_2:12606767-12606786 Msa0909620:CDS 30.0%
GTGAAAGCTTCAATTGATAA+TGG + chr6_2:12606801-12606820 Msa0909620:CDS 30.0%
ACTCTTTCTTAGGTAACTAA+CGG + chr6_2:12606961-12606980 Msa0909620:three_prime_UTR 30.0%
TATTACTCCTTTATGCAAGT+TGG - chr6_2:12607028-12607047 None:intergenic 30.0%
GTGTGGTTATACTAAGGATT+GGG - chr6_2:12604469-12604488 None:intergenic 35.0%
AGTGTGGTTATACTAAGGAT+TGG - chr6_2:12604470-12604489 None:intergenic 35.0%
ACTTCAGTGTGGTTATACTA+AGG - chr6_2:12604475-12604494 None:intergenic 35.0%
TGGAAAAGTAAACTTCAGTG+TGG - chr6_2:12604486-12604505 None:intergenic 35.0%
! ATTCTTTCTGGAAGAGAGAT+TGG - chr6_2:12604506-12604525 None:intergenic 35.0%
TCTCTCTTCCAGAAAGAATA+TGG + chr6_2:12604507-12604526 Msa0909620:exon 35.0%
TTCATGAGCCATATTCTTTC+TGG - chr6_2:12604518-12604537 None:intergenic 35.0%
CCAAGGATTCCAAATCTTAT+TGG - chr6_2:12604550-12604569 None:intergenic 35.0%
! CCAATAAGATTTGGAATCCT+TGG + chr6_2:12604547-12604566 Msa0909620:CDS 35.0%
ATTGCATAGAGAGTTGAGTT+TGG - chr6_2:12604619-12604638 None:intergenic 35.0%
AACTCAACTCTCTATGCAAT+TGG + chr6_2:12604619-12604638 Msa0909620:CDS 35.0%
!! CGTATATTTTTGCATGGGAA+GGG - chr6_2:12604693-12604712 None:intergenic 35.0%
CCTTCCCATGCAAAAATATA+CGG + chr6_2:12604691-12604710 Msa0909620:CDS 35.0%
! TCTCCAACATTTAAAGCAAC+TGG - chr6_2:12604841-12604860 None:intergenic 35.0%
! TGGAGAACTTGACAAGATTT+TGG + chr6_2:12604855-12604874 Msa0909620:CDS 35.0%
! GATGAATCATACCGATTGAA+GGG - chr6_2:12604989-12605008 None:intergenic 35.0%
AGGATAACTATTGTGAGAAG+AGG + chr6_2:12605443-12605462 Msa0909620:intron 35.0%
ACTATGAGCCAAATAGTCAA+TGG - chr6_2:12606026-12606045 None:intergenic 35.0%
TTGGCTCATAGTTTGATTGT+TGG + chr6_2:12606034-12606053 Msa0909620:intron 35.0%
!! TTTGTTTTCGCAATTGTGCT+TGG + chr6_2:12606084-12606103 Msa0909620:intron 35.0%
TTGTGCTTGGAGAATATCAT+TGG + chr6_2:12606097-12606116 Msa0909620:intron 35.0%
! ACATGCTACATTTTCTTACC+CGG + chr6_2:12606233-12606252 Msa0909620:CDS 35.0%
!!! TGTAAGGCTTTTGCTGTTTT+GGG - chr6_2:12606381-12606400 None:intergenic 35.0%
! ACACCTGCTTCATTGTATTT+TGG - chr6_2:12606408-12606427 None:intergenic 35.0%
CTTGTGAAGCTTCTTTGATA+TGG + chr6_2:12606436-12606455 Msa0909620:CDS 35.0%
AAAGCCTCATTCTCTTCATT+AGG - chr6_2:12606570-12606589 None:intergenic 35.0%
TTGTTGAACTTTCTACTGGT+TGG + chr6_2:12606616-12606635 Msa0909620:CDS 35.0%
! ACTATAACCTCACTTGGTTT+TGG - chr6_2:12606645-12606664 None:intergenic 35.0%
!! TATTCCACAAGAAGCACTTA+TGG + chr6_2:12606674-12606693 Msa0909620:CDS 35.0%
TTAACCATAAGTGCTTCTTG+TGG - chr6_2:12606681-12606700 None:intergenic 35.0%
!! ACAAGAAGCACTTATGGTTA+AGG + chr6_2:12606680-12606699 Msa0909620:CDS 35.0%
CTCTAATACTCAATAGGAAC+AGG - chr6_2:12606834-12606853 None:intergenic 35.0%
GAGATGCTCTAATACTCAAT+AGG - chr6_2:12606840-12606859 None:intergenic 35.0%
! AGTATTAGAGCATCTCCAAT+GGG + chr6_2:12606844-12606863 Msa0909620:exon 35.0%
TCCAATAGAGGATACTTAAC+GGG - chr6_2:12606895-12606914 None:intergenic 35.0%
CTCCAATAGAGGATACTTAA+CGG - chr6_2:12606896-12606915 None:intergenic 35.0%
! ATTTTTCCTTCCTCCAATAG+AGG - chr6_2:12606907-12606926 None:intergenic 35.0%
GGAAAAATGAGTTCCTGTTA+AGG + chr6_2:12606919-12606938 Msa0909620:three_prime_UTR 35.0%
CTCTTTCTTAGGTAACTAAC+GGG + chr6_2:12606962-12606981 Msa0909620:three_prime_UTR 35.0%
TGGTTATACTAAGGATTGGG+TGG - chr6_2:12604466-12604485 None:intergenic 40.0%
TGCATGGGAAGGGAAATTAT+TGG - chr6_2:12604683-12604702 None:intergenic 40.0%
!! CCGTATATTTTTGCATGGGA+AGG - chr6_2:12604694-12604713 None:intergenic 40.0%
! TCTCTTTGGTTCCCTTCAAT+CGG + chr6_2:12604975-12604994 Msa0909620:CDS 40.0%
! GGATGAATCATACCGATTGA+AGG - chr6_2:12604990-12605009 None:intergenic 40.0%
ATGTCCTTTGCTAGGAAATC+TGG - chr6_2:12606264-12606283 None:intergenic 40.0%
!!! GTGTAAGGCTTTTGCTGTTT+TGG - chr6_2:12606382-12606401 None:intergenic 40.0%
ATAACAGCAATAGGGGCAAA+AGG + chr6_2:12606516-12606535 Msa0909620:CDS 40.0%
TAACAGCAATAGGGGCAAAA+GGG + chr6_2:12606517-12606536 Msa0909620:CDS 40.0%
TTGGAATCCAAAACCAAGTG+AGG + chr6_2:12606635-12606654 Msa0909620:CDS 40.0%
! GGTTAAGGAATTTGCTCATC+TGG + chr6_2:12606695-12606714 Msa0909620:CDS 40.0%
! AAGGAATTTGCTCATCTGGT+TGG + chr6_2:12606699-12606718 Msa0909620:CDS 40.0%
! AATTTGCTCATCTGGTTGGT+GGG + chr6_2:12606703-12606722 Msa0909620:CDS 40.0%
!! TGGTTGGTGGGATTAAGTAT+GGG + chr6_2:12606715-12606734 Msa0909620:CDS 40.0%
! GAGTATTAGAGCATCTCCAA+TGG + chr6_2:12606843-12606862 Msa0909620:exon 40.0%
! GTATTAGAGCATCTCCAATG+GGG + chr6_2:12606845-12606864 Msa0909620:exon 40.0%
! TATTAGAGCATCTCCAATGG+GGG + chr6_2:12606846-12606865 Msa0909620:exon 40.0%
CCAATAGAGGATACTTAACG+GGG - chr6_2:12606894-12606913 None:intergenic 40.0%
CGTTAAGTATCCTCTATTGG+AGG + chr6_2:12606894-12606913 Msa0909620:three_prime_UTR 40.0%
AAGTATCCTCTATTGGAGGA+AGG + chr6_2:12606898-12606917 Msa0909620:three_prime_UTR 40.0%
ATAGTTGCTCGTTCCTTAAC+AGG - chr6_2:12606935-12606954 None:intergenic 40.0%
ACTTGGTCCAACTTGCATAA+AGG + chr6_2:12607018-12607037 Msa0909620:three_prime_UTR 40.0%
AAGGATTGGGTGGCTATTAG+AGG - chr6_2:12604456-12604475 None:intergenic 45.0%
TAGCTATCTCTGCACAACCA+AGG - chr6_2:12604567-12604586 None:intergenic 45.0%
! TGAGTTTGGTGAGAGGGTTA+TGG - chr6_2:12604605-12604624 None:intergenic 45.0%
! GAGAGTTGAGTTTGGTGAGA+GGG - chr6_2:12604611-12604630 None:intergenic 45.0%
! AGAGAGTTGAGTTTGGTGAG+AGG - chr6_2:12604612-12604631 None:intergenic 45.0%
GACGTCCGGATCATCTAAAA+CGG - chr6_2:12604728-12604747 None:intergenic 45.0%
! CAGTGAAGGTGTAAGCTAGT+CGG - chr6_2:12604772-12604791 None:intergenic 45.0%
!! GACTAGCTTACACCTTCACT+GGG + chr6_2:12604771-12604790 Msa0909620:CDS 45.0%
CAGAGACAGAGACGAAGTAT+AGG + chr6_2:12605616-12605635 Msa0909620:intron 45.0%
TTTGTGTCATGCTACGTTCC+TGG - chr6_2:12605987-12606006 None:intergenic 45.0%
! TTGTTGGTCTAGCTACCTCA+AGG + chr6_2:12606050-12606069 Msa0909620:intron 45.0%
! TGTTGGTCTAGCTACCTCAA+GGG + chr6_2:12606051-12606070 Msa0909620:intron 45.0%
GAGTCCAGATTTCCTAGCAA+AGG + chr6_2:12606257-12606276 Msa0909620:CDS 45.0%
TCACACGAATGTCCTTTGCT+AGG - chr6_2:12606272-12606291 None:intergenic 45.0%
AAGCCAGATCTTGATGCACT+AGG + chr6_2:12606291-12606310 Msa0909620:CDS 45.0%
GTTCCTAGTGCATCAAGATC+TGG - chr6_2:12606297-12606316 None:intergenic 45.0%
CTTGATGCACTAGGAACACT+AGG + chr6_2:12606300-12606319 Msa0909620:CDS 45.0%
! GAATTTGCTCATCTGGTTGG+TGG + chr6_2:12606702-12606721 Msa0909620:CDS 45.0%
!! CTGGTTGGTGGGATTAAGTA+TGG + chr6_2:12606714-12606733 Msa0909620:CDS 45.0%
TGTTAAGTAAGGACCCCCAT+TGG - chr6_2:12606862-12606881 None:intergenic 45.0%
ATGGGGGTCCTTACTTAACA+AGG + chr6_2:12606862-12606881 Msa0909620:three_prime_UTR 45.0%
GGAGTGGTCCTTGTTAAGTA+AGG - chr6_2:12606873-12606892 None:intergenic 45.0%
CCCCGTTAAGTATCCTCTAT+TGG + chr6_2:12606891-12606910 Msa0909620:three_prime_UTR 45.0%
!!! AAATAAATTTTAGATAATTA+GGG - chr6_2:12605513-12605532 None:intergenic 5.0%
!!! AAAATAAATTTTAGATAATT+AGG - chr6_2:12605514-12605533 None:intergenic 5.0%
!! CGACGCCGTTTTAGATGATC+CGG + chr6_2:12604720-12604739 Msa0909620:CDS 50.0%
!! ATGTAGACAGCATCGACGTC+CGG - chr6_2:12604742-12604761 None:intergenic 50.0%
AGGTGTAAGCTAGTCGGAAG+TGG - chr6_2:12604766-12604785 None:intergenic 50.0%
!! CGACTAGCTTACACCTTCAC+TGG + chr6_2:12604770-12604789 Msa0909620:CDS 50.0%
TAGCTACCTCAAGGGATCGA+GGG + chr6_2:12606059-12606078 Msa0909620:intron 50.0%
CTAGGAAATCTGGACTCACC+GGG - chr6_2:12606254-12606273 None:intergenic 50.0%
GCTAGGAAATCTGGACTCAC+CGG - chr6_2:12606255-12606274 None:intergenic 50.0%
CTAGGAACACTAGGTGACAC+TGG + chr6_2:12606309-12606328 Msa0909620:CDS 50.0%
GAACACTAGGTGACACTGGT+TGG + chr6_2:12606313-12606332 Msa0909620:CDS 50.0%
AGAGGATACTTAACGGGGAG+TGG - chr6_2:12606889-12606908 None:intergenic 50.0%
CACCTTCACTGGGCAGTTCT+TGG + chr6_2:12604781-12604800 Msa0909620:CDS 55.0%
CACCAAGAACTGCCCAGTGA+AGG - chr6_2:12604786-12604805 None:intergenic 55.0%
CTAGCTACCTCAAGGGATCG+AGG + chr6_2:12606058-12606077 Msa0909620:intron 55.0%
AGCTACCTCAAGGGATCGAG+GGG + chr6_2:12606060-12606079 Msa0909620:intron 55.0%
CAAATCCCCTCGATCCCTTG+AGG - chr6_2:12606068-12606087 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 12604387 12607197 12604387 ID=Msa0909620;Name=Msa0909620
chr6_2 mRNA 12604387 12607197 12604387 ID=Msa0909620-mRNA-1;Parent=Msa0909620;Name=Msa0909620-mRNA-1;_AED=0.02;_eAED=0.02;_QI=139|1|1|1|1|1|2|346|363
chr6_2 exon 12604387 12604996 12604387 ID=Msa0909620-mRNA-1:exon:2843;Parent=Msa0909620-mRNA-1
chr6_2 exon 12606231 12607197 12606231 ID=Msa0909620-mRNA-1:exon:2844;Parent=Msa0909620-mRNA-1
chr6_2 five_prime_UTR 12604387 12604525 12604387 ID=Msa0909620-mRNA-1:five_prime_utr;Parent=Msa0909620-mRNA-1
chr6_2 CDS 12604526 12604996 12604526 ID=Msa0909620-mRNA-1:cds;Parent=Msa0909620-mRNA-1
chr6_2 CDS 12606231 12606851 12606231 ID=Msa0909620-mRNA-1:cds;Parent=Msa0909620-mRNA-1
chr6_2 three_prime_UTR 12606852 12607197 12606852 ID=Msa0909620-mRNA-1:three_prime_utr;Parent=Msa0909620-mRNA-1
Gene Sequence

>Msa0909620

ATGGCTCATGAAGAAACAAAACCAATAAGATTTGGAATCCTTGGTTGTGCAGAGATAGCTAGAAAAGTTTCAAGAGCCATAACCCTCTCACCAAACTCAACTCTCTATGCAATTGGAAGCCGTTCATTAGAAAAAGCAACAAAATTTGCAGCTTCCAATAATTTCCCTTCCCATGCAAAAATATACGGTTCATACGACGCCGTTTTAGATGATCCGGACGTCGATGCTGTCTACATGCCACTTCCGACTAGCTTACACCTTCACTGGGCAGTTCTTGGTGCTCAAAAGAAGAAACACTTGTTGCTTGAGAAACCAGTTGCTTTAAATGTTGGAGAACTTGACAAGATTTTGGAAGCTTGTGAATCTAATAGATTGCAGTATATGGATTCTACTATGTGGATGCATCATCCTAGAACTGAAAAAATGTTTCAGTTTATATCTGATGCTAATCTCTTTGGTTCCCTTCAATCGGTACATGCTACATTTTCTTACCCGGTGAGTCCAGATTTCCTAGCAAAGGACATTCGTGTGAAGCCAGATCTTGATGCACTAGGAACACTAGGTGACACTGGTTGGTATTGCATTAGAGCAATTTTATGGGCTGCAAATTACGAATTACCCAAAACAGCAAAAGCCTTACACAAACCAAAATACAATGAAGCAGGTGTAATTTTGTCTTGTGAAGCTTCTTTGATATGGGAAGATAACAAAGTAGCAACTTTCTTTTGTTCCTTTTTATCAGATATGAATATGGATATAACAGCAATAGGGGCAAAAGGGTCATTGCGTGTTCATGATTATGTTATACCTAATGAAGAGAATGAGGCTTTGTTTAGAACAAGTTCAAATTCTTATTTTGTTGAACTTTCTACTGGTTGGAATCCAAAACCAAGTGAGGTTATAGTTAAAAATGATATTCCACAAGAAGCACTTATGGTTAAGGAATTTGCTCATCTGGTTGGTGGGATTAAGTATGGGAATTGTAAAGCTGACAATAAATGGGCAATTATTAGTAGGAAAACTCAAGTGGTTATTGATGCTGTGAAAGCTTCAATTGATAATGGTCTTCAGCCTGTTCCTATTGAGTATTAG
Protein sequence

>Msa0909620

MAHEETKPIRFGILGCAEIARKVSRAITLSPNSTLYAIGSRSLEKATKFAASNNFPSHAKIYGSYDAVLDDPDVDAVYMPLPTSLHLHWAVLGAQKKKHLLLEKPVALNVGELDKILEACESNRLQYMDSTMWMHHPRTEKMFQFISDANLFGSLQSVHATFSYPVSPDFLAKDIRVKPDLDALGTLGDTGWYCIRAILWAANYELPKTAKALHKPKYNEAGVILSCEASLIWEDNKVATFFCSFLSDMNMDITAIGAKGSLRVHDYVIPNEENEALFRTSSNSYFVELSTGWNPKPSEVIVKNDIPQEALMVKEFAHLVGGIKYGNCKADNKWAIISRKTQVVIDAVKASIDNGLQPVPIEY*