AlfalfaGEDB | Msa0947360

M. sativa cultivar zhongmu-4 / Msa0947360

KEGG: K03549
GO: GO:0000902 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009653 GO:0009826 GO:0009932 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0016043 GO:0016049 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0032502 GO:0032989 GO:0034220 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048589 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0055085 GO:0060560 GO:0071804 GO:0071805 GO:0071840 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805
PFAM: PF02705.19

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0947360	sp\|Q9LD18\|POT4_ARATH	76.172	789	183	4	1	784	1	789	0.0	1203

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0947360	A0A396HDZ9	98.344	785	12	1	1	784	1	785	0.0	1585

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0264580	Msa0947360	0.806803	6.888278e-50	-8.615850e-47
Msa0295030	Msa0947360	0.802724	4.898377e-49	-8.615850e-47
Msa0339970	Msa0947360	0.808037	3.769934e-50	-8.615850e-47
Msa0947360	Msa1300370	0.801853	7.399850e-49	-8.615850e-47
Msa0947360	Msa1301410	0.808047	3.751362e-50	-8.615850e-47
Msa0947360	Msa1332340	0.804104	2.535727e-49	-8.615850e-47

Showing 1 to 6 of 6 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0947360	MtrunA17_Chr6g0461871	98.344	785	12	1	1	784	1	785	1585
Msa0947360	MtrunA17_Chr6g0451081	56.944	792	317	11	1	784	1	776	902
Msa0947360	MtrunA17_Chr8g0387661	57.347	769	316	6	25	784	27	792	887
Msa0947360	MtrunA17_Chr3g0128831	54.286	805	322	12	12	784	4	794	849
Msa0947360	MtrunA17_Chr5g0430731	53.411	777	326	6	9	784	13	754	848
Msa0947360	MtrunA17_Chr2g0297291	50.458	765	349	6	25	784	50	789	735
Msa0947360	MtrunA17_Chr4g0052401	49.084	764	359	4	25	784	50	787	715
Msa0947360	MtrunA17_Chr8g0393241	45.627	789	390	11	22	781	18	796	684
Msa0947360	MtrunA17_Chr8g0365001	46.094	768	399	5	19	784	86	840	682
Msa0947360	MtrunA17_Chr4g0055471	42.911	790	427	7	1	784	44	815	662

Showing 1 to 10 of 30 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0947360	AT3G02050.1	76.172	789	183	4	1	784	1	789	1203
Msa0947360	AT4G23640.1	57.403	770	312	8	25	784	12	775	894
Msa0947360	AT1G70300.1	55.485	793	333	10	1	784	1	782	868
Msa0947360	AT2G40540.1	54.125	800	326	7	10	784	11	794	855
Msa0947360	AT2G40540.5	54.125	800	326	7	10	784	11	794	855
Msa0947360	AT2G40540.4	54.125	800	326	7	10	784	11	794	855
Msa0947360	AT2G40540.2	54.125	800	326	7	10	784	11	794	855
Msa0947360	AT2G40540.3	54.125	800	326	7	10	784	11	794	855
Msa0947360	AT5G14880.1	56.329	790	316	12	9	784	7	781	850
Msa0947360	AT2G30070.1	58.132	621	260	0	2	622	3	623	781

Showing 1 to 10 of 27 entries

Previous1 2 3Next

Find 190 sgRNAs with CRISPR-Local

Find 394 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCCAGATGATTACAAT+CGG	0.566628	6_3:+29984443	None:intergenic
AAAAGGAATATTGTAGCAAT+CGG	0.405929	6_3:+29982735	None:intergenic
AAAAGTGCACCAGGGAGGAT+GGG	0.564191	6_3:-29982667	Msa0947360:CDS
AAACCTTCCTGCATTTCACA+AGG	0.643965	6_3:-29982430	Msa0947360:CDS
AAACGTCTTCAGCGGAGACG+AGG	0.602875	6_3:+29985404	None:intergenic
AAAGGAATATTGTAGCAATC+GGG	0.530724	6_3:+29982736	None:intergenic
AAGAACTTGATGATATAATG+TGG	0.595238	6_3:+29984353	None:intergenic
AAGAAGAAGGACAAGACAAG+AGG	0.585159	6_3:+29982642	None:intergenic
AAGATCTGCAAACATAGCTT+CGG	0.510919	6_3:+29984157	None:intergenic
AAGCTTCTTCATTTGATGGA+AGG	0.505745	6_3:-29982179	Msa0947360:CDS

Showing 1 to 10 of 190 entries

Previous1 2 3 4 5…19Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ACCAAACTCATATTCACATA+TGG	-	chr6_3:29981549-29981568	Msa0947360:three_prime_UTR	30.0%
TCCATATGTGAATATGAGTT+TGG	+	chr6_3:29981553-29981572	None:intergenic	30.0%
CTTCTTTAGTGTATTTGTGA+TGG	-	chr6_3:29982074-29982093	Msa0947360:CDS	30.0%
AAATTCAGATTGCTTGCAAT+CGG	+	chr6_3:29982343-29982362	None:intergenic	30.0%
AGTTTAGTTATCGGAAAAGT+CGG	+	chr6_3:29982435-29982454	None:intergenic	30.0%
AATACTTCACACCAATAACA+TGG	-	chr6_3:29982709-29982728	Msa0947360:CDS	30.0%
CAAAGATAGTTTCTTCATCA+TGG	+	chr6_3:29983027-29983046	None:intergenic	30.0%
CATGATGAAGAAACTATCTT+TGG	-	chr6_3:29983025-29983044	Msa0947360:intron	30.0%
ATCATGATGCAATTATTGTC+AGG	-	chr6_3:29983215-29983234	Msa0947360:intron	30.0%
ATTCGGAAGCAAGTTAAATT+TGG	+	chr6_3:29983279-29983298	None:intergenic	30.0%

Showing 1 to 10 of 394 entries

Previous1 2 3 4 5…40Next

Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	29981514	29987272	29981514	ID=Msa0947360;Name=Msa0947360
chr6_3	mRNA	29981514	29987272	29981514	ID=Msa0947360-mRNA-1;Parent=Msa0947360;Name=Msa0947360-mRNA-1;_AED=0.09;_eAED=0.09;_QI=54\|1\|1\|1\|1\|1\|9\|236\|784
chr6_3	exon	29981514	29982837	29981514	ID=Msa0947360-mRNA-1:exon:7948;Parent=Msa0947360-mRNA-1
chr6_3	exon	29983573	29983827	29983573	ID=Msa0947360-mRNA-1:exon:7947;Parent=Msa0947360-mRNA-1
chr6_3	exon	29983930	29984044	29983930	ID=Msa0947360-mRNA-1:exon:7946;Parent=Msa0947360-mRNA-1
chr6_3	exon	29984130	29984182	29984130	ID=Msa0947360-mRNA-1:exon:7945;Parent=Msa0947360-mRNA-1
chr6_3	exon	29984294	29984554	29984294	ID=Msa0947360-mRNA-1:exon:7944;Parent=Msa0947360-mRNA-1
chr6_3	exon	29984643	29984693	29984643	ID=Msa0947360-mRNA-1:exon:7943;Parent=Msa0947360-mRNA-1
chr6_3	exon	29985304	29985549	29985304	ID=Msa0947360-mRNA-1:exon:7942;Parent=Msa0947360-mRNA-1
chr6_3	exon	29985650	29985890	29985650	ID=Msa0947360-mRNA-1:exon:7941;Parent=Msa0947360-mRNA-1
chr6_3	exon	29987174	29987272	29987174	ID=Msa0947360-mRNA-1:exon:7940;Parent=Msa0947360-mRNA-1
chr6_3	five_prime_UTR	29987219	29987272	29987219	ID=Msa0947360-mRNA-1:five_prime_utr;Parent=Msa0947360-mRNA-1
chr6_3	CDS	29987174	29987218	29987174	ID=Msa0947360-mRNA-1:cds;Parent=Msa0947360-mRNA-1
chr6_3	CDS	29985650	29985890	29985650	ID=Msa0947360-mRNA-1:cds;Parent=Msa0947360-mRNA-1
chr6_3	CDS	29985304	29985549	29985304	ID=Msa0947360-mRNA-1:cds;Parent=Msa0947360-mRNA-1
chr6_3	CDS	29984643	29984693	29984643	ID=Msa0947360-mRNA-1:cds;Parent=Msa0947360-mRNA-1
chr6_3	CDS	29984294	29984554	29984294	ID=Msa0947360-mRNA-1:cds;Parent=Msa0947360-mRNA-1
chr6_3	CDS	29984130	29984182	29984130	ID=Msa0947360-mRNA-1:cds;Parent=Msa0947360-mRNA-1
chr6_3	CDS	29983930	29984044	29983930	ID=Msa0947360-mRNA-1:cds;Parent=Msa0947360-mRNA-1
chr6_3	CDS	29983573	29983827	29983573	ID=Msa0947360-mRNA-1:cds;Parent=Msa0947360-mRNA-1
chr6_3	CDS	29981750	29982837	29981750	ID=Msa0947360-mRNA-1:cds;Parent=Msa0947360-mRNA-1
chr6_3	three_prime_UTR	29981514	29981749	29981514	ID=Msa0947360-mRNA-1:three_prime_utr;Parent=Msa0947360-mRNA-1

Gene Sequence

>Msa0947360

ATGGAACCAGAATCCATAGCTTCATCTTCTCGAAATCCTTCTCAGTTGTCATGGATTAACTTGTCTAGGAATTTACTGTTAGCATATCAAAGCTTCGGTGTTGTATATGGAGATCTAAGCACATCGCCGCTCTATGTTTATAAAAGTACATTTGAAGGAAAGTTGCAGAACCACCATGATGAAGAAACTATCTTTGGTGTTTTTTCGTTGATTTTCTGGACTCTTACATTAATACCGTTGCTTAAATATGTATTCATTCTATTGAGCGCCGATGATAACGGTGAAGGTGGAACATTTGCTCTTTATTCGCTGCTTTGCAGGCATGCCAAATTTAACTTGCTTCCGAATCAACAAGCTGCCGATGAGGAGCTGTCGTCGTACAAATACGGTCCTTCATCGCAGACTGGAGCCTCGTCTCCGCTGAAGACGTTTTTGGAGAAGCACAAACGGTCAAGAACAGTACTTCTTGTTGTCGTACTGTTTGGTGCTTGCATGGTCATAGGTGATGGTGTGCTTTCTCCAGCTATTTCAGTTCTGGCATCGGTATCAGGATTAAAAGTTACGGAATCAAAATTCAATAATGGCGAACTTGTCCTGCTAGCATGTCTCATACTGGTTGGCCTATTTGCTCTCCAACATTGCGGAACACACAGAGTTGCATTTATGTTTGCACCGATTGTAATCATCTGGCTTTTATCGATTTTTATTCTTGGGATCTATAATACGATACACTGGAATCCAAAAATAGTCTTTGCTATCTCCCCACATTATATCATCAAGTTCTTCATCAAGACTAGTACTCAGGGTTGGATTTCTCTCGGAGGGATACTTCTCTGTATCACCGGAGCCGAAGCTATGTTTGCAGATCTTGGTCATTTTACTGCTTCGTCAATAAGGCTTGCCTTTGCTTTTGTTATATACCCGTGTTTGGTTATGCAATACATGGGCCAAGCAGCTTTTTTGTCTAAAAATCTCGACTCTGTTCATAATAGTTTTTACGACTCAATACCTGGACCTGTATTTTGGCCTGTTTTTGTTATTGCTACCTTGGCCGCTATTGTTGGGAGTCAAGCTACTATCACTGCTACTTTCTCCATCATCAAGCAGTGTCATGCACTTGGTTGTTTTCCCCGCGTCAAAGTCGTACACACCTCGAAACACATATTTGGACAGATATACATTCCAGAAATTAACTGGATACTTATGGTCTTGACTCTTGCTGTAACAATCGGATTTCAGGACATAACCTTAATTGGAAATGCTTATGGACTTGCTTGTATGACGGTAATGTTCATAACCACATTTCTGATGGCACTAGTCATAATCTTTGTCTGGCAGAAAAGCATCCCGATTGCTACAATATTCCTTTTGTTCTTTTGGATTGTCGAAGGCGTGTATCTATCAGCGGCGTTCCTAAAAGTGCACCAGGGAGGATGGGTTCCTCTTGTCTTGTCCTTCTTCTTCTTGATTGTTATGTATGTGTGGCATTACGGTATTCGTAGGAAGTACAAATACGATCTACACAACAAAGTTTCATTGAAATGGTTACTAGGTTTGGGCCCTAGTCTAGGAATTGTCCGTGTCCCAGGGATTGGACTCATCTACTCGGAACTTGCAACTGGAATACCATCGATATTCACCCACTTCGTAACAAACCTTCCTGCATTTCACAAGGTGTTGGTCTTTGTTTGCGTAAAATCGGTTCCTGTACCATATGTCTCACCTGAAGAACGTTTTCTGATTGGCCGAGCTTGTCCACGACCATATCGAATGTATAGGTGCATTGTTAGATACGGGTACAAGGACATTAAAAGGGATGATGGAGAGTTTGAGAATCATCTCATACAAAGTATAATGGAGTTTATCCAGATGGAGGCAGTGGAACCGCAATTCTCGAGTTCTGAAGCTTCTTCATTTGATGGAAGGATGGCTGTTATAGGTACCAGAAGCTTCGAATCAACTCCAAGCTTGATTTCGGCCGAGCAAGAAGATGTTGATATCGACGAAAGCATCCCTAGTAGCAGATCTATAACCCTGCGCCGCTTGCAATCAACTTTTGACGATGAAAACCCGCAAGTAAGAAGGCGTCGAGTAAGGTTTCAACTGCCTAACAACCCTGGATTGGATCATGCTGTTAAAGAAGAGCTTTTAGATTTAATCCAAGCCAAGGAGGCTGGAGTTGCATATATAATGGGACACTCGTATGTGAAGGCAAGGAAATCATCGTCGTTCTTGAAAAAGCTTGTGATCGATATGGGATACTCGTTTCTGCGAAAGAATTGCAGGGGTCCAGCTGTAGCTCTCAACATTCCTCACATCAGTCTTATCGAAGTTGGAATGATATATTATGTCTAG

Protein sequence

>Msa0947360

MEPESIASSSRNPSQLSWINLSRNLLLAYQSFGVVYGDLSTSPLYVYKSTFEGKLQNHHDEETIFGVFSLIFWTLTLIPLLKYVFILLSADDNGEGGTFALYSLLCRHAKFNLLPNQQAADEELSSYKYGPSSQTGASSPLKTFLEKHKRSRTVLLVVVLFGACMVIGDGVLSPAISVLASVSGLKVTESKFNNGELVLLACLILVGLFALQHCGTHRVAFMFAPIVIIWLLSIFILGIYNTIHWNPKIVFAISPHYIIKFFIKTSTQGWISLGGILLCITGAEAMFADLGHFTASSIRLAFAFVIYPCLVMQYMGQAAFLSKNLDSVHNSFYDSIPGPVFWPVFVIATLAAIVGSQATITATFSIIKQCHALGCFPRVKVVHTSKHIFGQIYIPEINWILMVLTLAVTIGFQDITLIGNAYGLACMTVMFITTFLMALVIIFVWQKSIPIATIFLLFFWIVEGVYLSAAFLKVHQGGWVPLVLSFFFLIVMYVWHYGIRRKYKYDLHNKVSLKWLLGLGPSLGIVRVPGIGLIYSELATGIPSIFTHFVTNLPAFHKVLVFVCVKSVPVPYVSPEERFLIGRACPRPYRMYRCIVRYGYKDIKRDDGEFENHLIQSIMEFIQMEAVEPQFSSSEASSFDGRMAVIGTRSFESTPSLISAEQEDVDIDESIPSSRSITLRRLQSTFDDENPQVRRRRVRFQLPNNPGLDHAVKEELLDLIQAKEAGVAYIMGHSYVKARKSSSFLKKLVIDMGYSFLRKNCRGPAVALNIPHISLIEVGMIYYV*