AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0947360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0947360 MtrunA17_Chr6g0461871 98.344 785 12 1 1 784 1 785 0.0 1585
Msa0947360 MtrunA17_Chr6g0451081 56.944 792 317 11 1 784 1 776 0.0 902
Msa0947360 MtrunA17_Chr8g0387661 57.347 769 316 6 25 784 27 792 0.0 887
Msa0947360 MtrunA17_Chr3g0128831 54.286 805 322 12 12 784 4 794 0.0 849
Msa0947360 MtrunA17_Chr5g0430731 53.411 777 326 6 9 784 13 754 0.0 848
Msa0947360 MtrunA17_Chr2g0297291 50.458 765 349 6 25 784 50 789 0.0 735
Msa0947360 MtrunA17_Chr4g0052401 49.084 764 359 4 25 784 50 787 0.0 715
Msa0947360 MtrunA17_Chr8g0393241 45.627 789 390 11 22 781 18 796 0.0 684
Msa0947360 MtrunA17_Chr8g0365001 46.094 768 399 5 19 784 86 840 0.0 682
Msa0947360 MtrunA17_Chr4g0055471 42.911 790 427 7 1 784 44 815 0.0 662
Msa0947360 MtrunA17_Chr7g0268981 42.763 760 378 6 25 782 67 771 0.0 636
Msa0947360 MtrunA17_Chr2g0279131 42.765 774 416 7 19 784 95 849 0.0 622
Msa0947360 MtrunA17_Chr5g0429991 41.720 779 409 7 23 784 99 849 0.0 593
Msa0947360 MtrunA17_Chr8g0380281 39.344 793 434 7 7 784 22 782 0.0 579
Msa0947360 MtrunA17_Chr5g0430571 46.599 588 243 7 197 784 19 535 1.05e-178 523
Msa0947360 MtrunA17_Chr8g0375411 42.613 643 345 7 24 656 28 656 9.65e-176 521
Msa0947360 MtrunA17_Chr5g0413721 58.508 429 165 5 7 425 5 430 5.50e-161 489
Msa0947360 MtrunA17_Chr5g0413721 49.589 365 173 4 422 784 516 871 1.31e-113 365
Msa0947360 MtrunA17_Chr8g0344561 41.118 608 310 8 177 784 13 572 8.27e-155 463
Msa0947360 MtrunA17_Chr2g0297311 54.987 391 173 1 33 423 58 445 4.42e-141 423
Msa0947360 MtrunA17_Chr8g0365031 43.619 431 237 2 197 623 40 468 1.22e-128 395
Msa0947360 MtrunA17_Chr8g0344591 42.282 447 235 3 177 623 13 436 3.40e-120 370
Msa0947360 MtrunA17_Chr2g0297321 43.052 367 182 6 423 784 3 347 1.28e-96 304
Msa0947360 MtrunA17_Chr5g0413751 57.386 176 75 0 423 598 133 308 1.20e-70 234
Msa0947360 MtrunA17_Chr5g0413751 57.609 92 34 1 87 173 47 138 6.04e-21 94.4
Msa0947360 MtrunA17_Chr5g0430551 66.013 153 52 0 25 177 11 163 2.12e-62 207
Msa0947360 MtrunA17_Chr8g0365041 50.000 202 82 5 1 192 42 234 7.06e-52 181
Msa0947360 MtrunA17_Chr8g0344581 55.844 154 60 4 25 177 4 150 1.77e-44 157
Msa0947360 MtrunA17_Chr8g0344551 55.195 154 61 4 25 177 4 150 2.82e-44 156
Msa0947360 MtrunA17_Chr1g0159401 40.517 116 62 2 175 290 12 120 1.43e-15 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0947360 AT3G02050.1 76.172 789 183 4 1 784 1 789 0.0 1203
Msa0947360 AT4G23640.1 57.403 770 312 8 25 784 12 775 0.0 894
Msa0947360 AT1G70300.1 55.485 793 333 10 1 784 1 782 0.0 868
Msa0947360 AT2G40540.1 54.125 800 326 7 10 784 11 794 0.0 855
Msa0947360 AT2G40540.5 54.125 800 326 7 10 784 11 794 0.0 855
Msa0947360 AT2G40540.4 54.125 800 326 7 10 784 11 794 0.0 855
Msa0947360 AT2G40540.2 54.125 800 326 7 10 784 11 794 0.0 855
Msa0947360 AT2G40540.3 54.125 800 326 7 10 784 11 794 0.0 855
Msa0947360 AT5G14880.1 56.329 790 316 12 9 784 7 781 0.0 850
Msa0947360 AT2G30070.1 58.132 621 260 0 2 622 3 623 0.0 781
Msa0947360 AT2G30070.1 61.111 72 28 0 713 784 641 712 1.22e-22 103
Msa0947360 AT2G35060.4 48.276 754 361 6 33 784 66 792 0.0 707
Msa0947360 AT2G35060.1 48.276 754 361 6 33 784 66 792 0.0 707
Msa0947360 AT2G35060.3 48.276 754 361 6 33 784 66 792 0.0 707
Msa0947360 AT2G35060.2 48.212 755 361 7 33 784 66 793 0.0 702
Msa0947360 AT1G60160.1 45.038 786 407 7 1 784 65 827 0.0 702
Msa0947360 AT1G31120.1 48.404 752 368 4 33 784 65 796 0.0 697
Msa0947360 AT4G19960.2 47.694 759 381 6 29 784 62 807 0.0 674
Msa0947360 AT4G19960.1 46.710 775 381 7 29 784 62 823 0.0 665
Msa0947360 AT4G19960.3 46.115 785 381 7 29 784 62 833 0.0 661
Msa0947360 AT4G13420.1 42.746 772 407 9 12 782 46 783 0.0 637
Msa0947360 AT2G30070.2 56.773 502 217 0 121 622 2 503 0.0 625
Msa0947360 AT2G30070.2 61.111 72 28 0 713 784 521 592 9.27e-23 103
Msa0947360 AT4G33530.1 40.736 788 423 8 14 784 95 855 0.0 608
Msa0947360 AT5G09400.1 41.244 788 413 7 19 784 99 858 0.0 592
Msa0947360 AT4G19960.4 46.870 591 301 5 197 784 6 586 2.06e-177 522
Msa0947360 AT4G33530.2 40.063 639 342 6 162 784 14 627 5.28e-169 502

Find 190 sgRNAs with CRISPR-Local

Find 394 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCAGGACATAACCTTAAT+TGG 0.151323 6_3:-29983584 Msa0947360:CDS
TTGAAAACTTGTTTCTAATA+TGG 0.163039 6_3:+29981679 None:intergenic
TGCTGTAACAATCGGATTTC+AGG 0.175404 6_3:-29983600 Msa0947360:CDS
GTGCTTTCTCCAGCTATTTC+AGG 0.198808 6_3:-29985303 Msa0947360:intron
CTCTTTATTCGCTGCTTTGC+AGG 0.205975 6_3:-29985515 Msa0947360:CDS
ACCATAAGCATTTCCAATTA+AGG 0.215797 6_3:+29983571 None:intergenic
GTGTTGCAGGACCTGTATTT+TGG 0.244964 6_3:-29983814 Msa0947360:intron
ATTCGGAAGCAAGTTAAATT+TGG 0.264964 6_3:+29985488 None:intergenic
CACACCTCGAAACACATATT+TGG 0.267140 6_3:-29983671 Msa0947360:CDS
ACGGGTACAAGGACATTAAA+AGG 0.272084 6_3:-29982290 Msa0947360:CDS
ATTGAAATGGTTACTAGGTT+TGG 0.295346 6_3:-29982547 Msa0947360:CDS
ACCTTAATTGGAAATGCTTA+TGG 0.301902 6_3:-29983572 Msa0947360:intron
TCATTCAAGTATGGTGAAAA+AGG 0.303717 6_3:+29981589 None:intergenic
ATAAGTATCCAGTTAATTTC+TGG 0.304370 6_3:+29983635 None:intergenic
AGAAATTAACTGGATACTTA+TGG 0.308820 6_3:-29983633 Msa0947360:CDS
TCTGAAGCTTCTTCATTTGA+TGG 0.310126 6_3:-29982183 Msa0947360:CDS
CAAAGCTTCGGTGTTGTATA+TGG 0.317218 6_3:-29985826 Msa0947360:CDS
TGGAGTTGATTCGAAGCTTC+TGG 0.317444 6_3:+29982140 None:intergenic
ACAGTTCTGGCATCGGTATC+AGG 0.318446 6_3:-29984675 Msa0947360:intron
AGGATGTAAAATTTACAAAA+TGG 0.320235 6_3:+29981609 None:intergenic
GAAGATGAAGCTATGGATTC+TGG 0.325547 6_3:+29987190 None:intergenic
TTGAAATGGTTACTAGGTTT+GGG 0.329362 6_3:-29982546 Msa0947360:CDS
GATGGAAGGATGGCTGTTAT+AGG 0.329614 6_3:-29982165 Msa0947360:CDS
GGCTGGAGTTGCATATATAA+TGG 0.341157 6_3:-29981911 Msa0947360:CDS
TATACATTCCAGAAATTAAC+TGG 0.342006 6_3:-29983643 Msa0947360:CDS
ACAACAAAGTTTCATTGAAA+TGG 0.345551 6_3:-29982560 Msa0947360:CDS
ATCAACTCCAAGCTTGATTT+CGG 0.358230 6_3:-29982127 Msa0947360:CDS
TGATATATGATACAACATTA+TGG 0.370618 6_3:-29981520 Msa0947360:three_prime_UTR
GCTACCTTGGCCGCTATTGT+TGG 0.373549 6_3:-29983776 Msa0947360:CDS
CGTTTCTGCGAAAGAATTGC+AGG 0.376232 6_3:-29981819 Msa0947360:CDS
ACGGAATCAAAATTCAATAA+TGG 0.379820 6_3:-29984642 Msa0947360:intron
CTCGACGCCTTCTTACTTGC+GGG 0.386663 6_3:+29982013 None:intergenic
TCATCTCATACAAAGTATAA+TGG 0.387176 6_3:-29982247 Msa0947360:CDS
CATGATGAAGAAACTATCTT+TGG 0.391665 6_3:-29985739 Msa0947360:CDS
TCATCGGCAGCTTGTTGATT+CGG 0.391685 6_3:+29985471 None:intergenic
CTTCTTGTTGTCGTACTGTT+TGG 0.395976 6_3:-29985351 Msa0947360:CDS
TCCATATGTGAATATGAGTT+TGG 0.398717 6_3:+29987214 None:intergenic
CAACTCCAGCCTCCTTGGCT+TGG 0.404830 6_3:+29981923 None:intergenic
GAAGCTATGTTTGCAGATCT+TGG 0.405358 6_3:-29984155 Msa0947360:CDS
AAAAGGAATATTGTAGCAAT+CGG 0.405929 6_3:+29982735 None:intergenic
TGATCCAATCCAGGGTTGTT+AGG 0.412649 6_3:+29981976 None:intergenic
CTACCTTGGCCGCTATTGTT+GGG 0.413857 6_3:-29983775 Msa0947360:CDS
CAATGACCATCATTCAAGTA+TGG 0.415193 6_3:+29981580 None:intergenic
GGTCTTTGTTTGCGTAAAAT+CGG 0.416825 6_3:-29982403 Msa0947360:CDS
TTGCACCGATTGTAATCATC+TGG 0.417023 6_3:-29984448 Msa0947360:CDS
TTTGGTGCTTGCATGGTCAT+AGG 0.421597 6_3:-29985333 Msa0947360:CDS
CACATCAGTCTTATCGAAGT+TGG 0.424667 6_3:-29981769 Msa0947360:CDS
CTGTTAGCATATCAAAGCTT+CGG 0.428880 6_3:-29985838 Msa0947360:CDS
ACCAAACTCATATTCACATA+TGG 0.429083 6_3:-29987215 Msa0947360:exon
AAGTTGATTGCAAGCGGCGC+AGG 0.430238 6_3:+29982049 None:intergenic
CTAGGAATTGTCCGTGTCCC+AGG 0.433982 6_3:-29982516 Msa0947360:CDS
CCAATCAGAAAACGTTCTTC+AGG 0.435007 6_3:+29982360 None:intergenic
GTTTATAAAAGTACATTTGA+AGG 0.435121 6_3:-29985778 Msa0947360:CDS
CTTCATCAAGACTAGTACTC+AGG 0.438904 6_3:-29984333 Msa0947360:CDS
CGCAATGTTGGAGAGCAAAT+AGG 0.439763 6_3:+29984495 None:intergenic
ATCTACTCGGAACTTGCAAC+TGG 0.441741 6_3:-29982483 Msa0947360:CDS
AAGTAAGAAGGCGTCGAGTA+AGG 0.442966 6_3:-29982008 Msa0947360:CDS
GTTTCATTGAAATGGTTACT+AGG 0.450379 6_3:-29982552 Msa0947360:CDS
CCTGCTAGCATGTCTCATAC+TGG 0.452739 6_3:-29984522 Msa0947360:CDS
TGCTCGGCCGAAATCAAGCT+TGG 0.452895 6_3:+29982120 None:intergenic
ATTGTCCGTGTCCCAGGGAT+TGG 0.453671 6_3:-29982510 Msa0947360:CDS
GCGGTTCCACTGCCTCCATC+TGG 0.454956 6_3:+29982217 None:intergenic
GTTATGTATGTGTGGCATTA+CGG 0.456184 6_3:-29982612 Msa0947360:CDS
CGACAATCCAAAAGAACAAA+AGG 0.456707 6_3:+29982718 None:intergenic
CAATGATGAAATCAATGATC+AGG 0.458345 6_3:+29981649 None:intergenic
ATATGCAACTCCAGCCTCCT+TGG 0.465025 6_3:+29981918 None:intergenic
ATGGTTCTCTGCAGTTGTCA+TGG 0.466926 6_3:-29985882 Msa0947360:intron
TTGACTCTTGCTGTAACAAT+CGG 0.470093 6_3:-29983608 Msa0947360:CDS
CAAAGATAGTTTCTTCATCA+TGG 0.471376 6_3:+29985740 None:intergenic
GCTGGAGTTGCATATATAAT+GGG 0.471955 6_3:-29981910 Msa0947360:CDS
GGGTTATAGATCTGCTACTA+GGG 0.472351 6_3:+29982070 None:intergenic
CACTAGTCATAATCTTTGTC+TGG 0.474410 6_3:-29982770 Msa0947360:CDS
GAGGCTCCAGTCTGCGATGA+AGG 0.475101 6_3:+29985423 None:intergenic
GTGTTTGGTTATGCAATACA+TGG 0.476098 6_3:-29983996 Msa0947360:CDS
ATGAAAACCCGCAAGTAAGA+AGG 0.476574 6_3:-29982020 Msa0947360:CDS
ATCTTCTCGAAATCCTTCTC+AGG 0.477411 6_3:-29987173 Msa0947360:intron
CTAGGTTTGGGCCCTAGTCT+AGG 0.478706 6_3:-29982534 Msa0947360:CDS
CTCTGTGTGTTCCGCAATGT+TGG 0.480499 6_3:+29984483 None:intergenic
TTAACAGCATGATCCAATCC+AGG 0.482648 6_3:+29981967 None:intergenic
TCCTGCATTTCACAAGGTGT+TGG 0.483278 6_3:-29982424 Msa0947360:CDS
TTAATCCAAGCCAAGGAGGC+TGG 0.483772 6_3:-29981928 Msa0947360:CDS
ATGCACCTATACATTCGATA+TGG 0.486036 6_3:+29982321 None:intergenic
CACGACCATATCGAATGTAT+AGG 0.487235 6_3:-29982326 Msa0947360:CDS
TATAGGTGCATTGTTAGATA+CGG 0.488450 6_3:-29982309 Msa0947360:CDS
TAAAAGTGCACCAGGGAGGA+TGG 0.489671 6_3:-29982668 Msa0947360:CDS
CGTTCTTCAGGTGAGACATA+TGG 0.492867 6_3:+29982372 None:intergenic
TTCTTCATTTGATGGAAGGA+TGG 0.493112 6_3:-29982175 Msa0947360:CDS
ACTGCCTAACAACCCTGGAT+TGG 0.494344 6_3:-29981980 Msa0947360:CDS
AGGGTTATAGATCTGCTACT+AGG 0.501190 6_3:+29982069 None:intergenic
CTATTGAGCGCCGATGATAA+CGG 0.504444 6_3:-29985655 Msa0947360:CDS
AAGCTTCTTCATTTGATGGA+AGG 0.505745 6_3:-29982179 Msa0947360:CDS
AAGGACATTAAAAGGGATGA+TGG 0.507864 6_3:-29982282 Msa0947360:CDS
AAGATCTGCAAACATAGCTT+CGG 0.510919 6_3:+29984157 None:intergenic
CTGTCCAAATATGTGTTTCG+AGG 0.511421 6_3:+29983667 None:intergenic
GATATATTATGTCTAGATTG+TGG 0.513129 6_3:-29981743 Msa0947360:exon
AATATGGATTTGTAACTACT+AGG 0.514271 6_3:+29981695 None:intergenic
TACGGTCCTTCATCGCAGAC+TGG 0.516475 6_3:-29985429 Msa0947360:CDS
ATCAAGCAGTGTCATGCACT+TGG 0.517666 6_3:-29983719 Msa0947360:CDS
GGTATCAGGATTAAAAGTTA+CGG 0.518229 6_3:-29984661 Msa0947360:CDS
ATTTCGAGAAGATGAAGCTA+TGG 0.518729 6_3:+29987183 None:intergenic
ACCAACACCTTGTGAAATGC+AGG 0.521396 6_3:+29982423 None:intergenic
CGTACTGTTTGGTGCTTGCA+TGG 0.524544 6_3:-29985340 Msa0947360:CDS
TGTCATGGATTAACTTGTCT+AGG 0.526123 6_3:-29985867 Msa0947360:CDS
GGCGTTCCTAAAAGTGCACC+AGG 0.530505 6_3:-29982676 Msa0947360:CDS
AAAGGAATATTGTAGCAATC+GGG 0.530724 6_3:+29982736 None:intergenic
CGGGTACAAGGACATTAAAA+GGG 0.532081 6_3:-29982289 Msa0947360:CDS
GATATCAACATCTTCTTGCT+CGG 0.532591 6_3:+29982104 None:intergenic
TTTAGATTTAATCCAAGCCA+AGG 0.535244 6_3:-29981935 Msa0947360:CDS
CATTGTTAGATACGGGTACA+AGG 0.540496 6_3:-29982301 Msa0947360:CDS
ACTCAGGGTTGGATTTCTCT+CGG 0.541690 6_3:-29984317 Msa0947360:CDS
GAGCTGTCGTCGTACAAATA+CGG 0.542689 6_3:-29985447 Msa0947360:CDS
GTTTATCCAGATGGAGGCAG+TGG 0.542753 6_3:-29982223 Msa0947360:CDS
CTAGCATGTCTCATACTGGT+TGG 0.543181 6_3:-29984518 Msa0947360:CDS
ACTCCCAACAATAGCGGCCA+AGG 0.543271 6_3:+29983772 None:intergenic
TTACCCTACAGTTCTGGCAT+CGG 0.546800 6_3:-29984682 Msa0947360:intron
ACTACCTTACCTGAAATAGC+TGG 0.548887 6_3:+29985294 None:intergenic
TGCATGACACTGCTTGATGA+TGG 0.549256 6_3:+29983724 None:intergenic
ACACGGACAATTCCTAGACT+AGG 0.553888 6_3:+29982522 None:intergenic
TCAAGACTAGTACTCAGGGT+TGG 0.554454 6_3:-29984328 Msa0947360:CDS
TCTTGATTGTTATGTATGTG+TGG 0.554494 6_3:-29982620 Msa0947360:CDS
GTTCATAACCACATTTCTGA+TGG 0.556704 6_3:-29982793 Msa0947360:CDS
CATAACAATCAAGAAGAAGA+AGG 0.558991 6_3:+29982629 None:intergenic
CAAGAGGAACCCATCCTCCC+TGG 0.559228 6_3:+29982658 None:intergenic
TATAATGGAGTTTATCCAGA+TGG 0.560256 6_3:-29982232 Msa0947360:CDS
AAAAGTGCACCAGGGAGGAT+GGG 0.564191 6_3:-29982667 Msa0947360:CDS
CGTCAAAAGTTGATTGCAAG+CGG 0.565019 6_3:+29982043 None:intergenic
AATACCTTCACCGTTATCAT+CGG 0.565220 6_3:+29985645 None:intergenic
AGGAAGGTTTGTTACGAAGT+GGG 0.566294 6_3:+29982443 None:intergenic
AAAAGCCAGATGATTACAAT+CGG 0.566628 6_3:+29984443 None:intergenic
ACTCGACGCCTTCTTACTTG+CGG 0.568178 6_3:+29982012 None:intergenic
CAGGAAGGTTTGTTACGAAG+TGG 0.569332 6_3:+29982442 None:intergenic
TTTCAACTGCCTAACAACCC+TGG 0.571708 6_3:-29981985 Msa0947360:CDS
CCAGTATGAGACATGCTAGC+AGG 0.572488 6_3:+29984522 None:intergenic
GGATCTATAATACGATACAC+TGG 0.573433 6_3:-29984403 Msa0947360:CDS
AGAACTTGATGATATAATGT+GGG 0.574528 6_3:+29984354 None:intergenic
AGGGTTGGATTTCTCTCGGA+GGG 0.577288 6_3:-29984313 Msa0947360:CDS
GGGATACTTCTCTGTATCAC+CGG 0.581413 6_3:-29984293 Msa0947360:intron
GTACGACGACAGCTCCTCAT+CGG 0.584229 6_3:+29985455 None:intergenic
AAGAAGAAGGACAAGACAAG+AGG 0.585159 6_3:+29982642 None:intergenic
TCAGGTGAGACATATGGTAC+AGG 0.585971 6_3:+29982378 None:intergenic
TTCATCAAGACTAGTACTCA+GGG 0.586587 6_3:-29984332 Msa0947360:CDS
CACGGACAATTCCTAGACTA+GGG 0.586686 6_3:+29982523 None:intergenic
GGTGTGTACGACTTTGACGC+GGG 0.588179 6_3:+29983688 None:intergenic
GCTTGCATGGTCATAGGTGA+TGG 0.589102 6_3:-29985327 Msa0947360:CDS
ATAGGTGCATTGTTAGATAC+GGG 0.589766 6_3:-29982308 Msa0947360:CDS
TAGGAATTGTCCGTGTCCCA+GGG 0.591674 6_3:-29982515 Msa0947360:CDS
AAGAACTTGATGATATAATG+TGG 0.595238 6_3:+29984353 None:intergenic
CGGGTATATAACAAAAGCAA+AGG 0.595997 6_3:+29984018 None:intergenic
AGTTGATTGCAAGCGGCGCA+GGG 0.596111 6_3:+29982050 None:intergenic
CTAGGAATATCTAACCTAAG+TGG 0.597815 6_3:+29981713 None:intergenic
GATATGGTCGTGGACAAGCT+CGG 0.598042 6_3:+29982337 None:intergenic
AGGGTCGGTTGTACCTGAGA+AGG 0.600575 6_3:+29987160 None:intergenic
AGTAGATGAGTCCAATCCCT+GGG 0.601618 6_3:+29982499 None:intergenic
GACACTCGTATGTGAAGGCA+AGG 0.602824 6_3:-29981888 Msa0947360:CDS
AAACGTCTTCAGCGGAGACG+AGG 0.602875 6_3:+29985404 None:intergenic
GAGTAGATGAGTCCAATCCC+TGG 0.603429 6_3:+29982498 None:intergenic
ATGAATACATATTTAAGCAA+CGG 0.604438 6_3:+29985679 None:intergenic
GTTTCTGCGAAAGAATTGCA+GGG 0.607197 6_3:-29981818 Msa0947360:CDS
ACGAAGTGGGTGAATATCGA+TGG 0.607427 6_3:+29982456 None:intergenic
CTATACATTCGATATGGTCG+TGG 0.608299 6_3:+29982327 None:intergenic
GCTTCAGAACTCGAGAATTG+CGG 0.608404 6_3:+29982198 None:intergenic
TAACAGCATGATCCAATCCA+GGG 0.608772 6_3:+29981968 None:intergenic
TGTGGCATTACGGTATTCGT+AGG 0.609257 6_3:-29982602 Msa0947360:CDS
ATGTATTGCATAACCAAACA+CGG 0.612747 6_3:+29983998 None:intergenic
GACTAGTGCCATCAGAAATG+TGG 0.617430 6_3:+29982785 None:intergenic
TGCAGGACTTGCTTGTATGA+CGG 0.622018 6_3:-29982820 Msa0947360:intron
GAATCAACAAGCTGCCGATG+AGG 0.623832 6_3:-29985469 Msa0947360:CDS
GGAATGTTGAGAGCTACAGC+TGG 0.623872 6_3:+29981793 None:intergenic
AGCGCCGATGATAACGGTGA+AGG 0.624946 6_3:-29985649 Msa0947360:intron
AATGGGACACTCGTATGTGA+AGG 0.630197 6_3:-29981893 Msa0947360:CDS
TGAGTCCAATCCCTGGGACA+CGG 0.634316 6_3:+29982505 None:intergenic
AGATAGTTTCTTCATCATGG+TGG 0.637899 6_3:+29985743 None:intergenic
AGGTGTGTACGACTTTGACG+CGG 0.639117 6_3:+29983687 None:intergenic
AAACCTTCCTGCATTTCACA+AGG 0.643965 6_3:-29982430 Msa0947360:CDS
AATGGAGTTTATCCAGATGG+AGG 0.651775 6_3:-29982229 Msa0947360:CDS
AGCTTGACTCCCAACAATAG+CGG 0.652223 6_3:+29983766 None:intergenic
TGTTTGGTTATGCAATACAT+GGG 0.653189 6_3:-29983995 Msa0947360:CDS
CGAAGGCGTGTATCTATCAG+CGG 0.653373 6_3:-29982697 Msa0947360:CDS
AGGGATTGGACTCATCTACT+CGG 0.657568 6_3:-29982496 Msa0947360:CDS
CTATTTGCTCTCCAACATTG+CGG 0.663991 6_3:-29984494 Msa0947360:CDS
TTTCTGCGAAAGAATTGCAG+GGG 0.665372 6_3:-29981817 Msa0947360:CDS
ACACCTTGTGAAATGCAGGA+AGG 0.668467 6_3:+29982427 None:intergenic
CAGGGTTGGATTTCTCTCGG+AGG 0.669872 6_3:-29984314 Msa0947360:CDS
TGTATTGCATAACCAAACAC+GGG 0.677942 6_3:+29983999 None:intergenic
TTCCTAAAAGTGCACCAGGG+AGG 0.703180 6_3:-29982672 Msa0947360:CDS
GAACTTGATGATATAATGTG+GGG 0.708764 6_3:+29984355 None:intergenic
AGATTTAATCCAAGCCAAGG+AGG 0.711722 6_3:-29981932 Msa0947360:CDS
ACTTCGATAAGACTGATGTG+AGG 0.732857 6_3:+29981772 None:intergenic
GTGTGTACGACTTTGACGCG+GGG 0.733832 6_3:+29983689 None:intergenic
GCGTTCCTAAAAGTGCACCA+GGG 0.755406 6_3:-29982675 Msa0947360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTATTCGTTAAATAA+TGG - chr6_3:29982841-29982860 Msa0947360:intron 10.0%
!!! AAAAAAAATTGATTTCATTA+AGG + chr6_3:29984909-29984928 None:intergenic 10.0%
!! TAAAAATGAATTATTTGATT+TGG - chr6_3:29985360-29985379 Msa0947360:CDS 10.0%
!! AATAAAATAAAAATCTGCAA+TGG - chr6_3:29982590-29982609 Msa0947360:CDS 15.0%
!! ATTTAACGAATAATAATACT+TGG + chr6_3:29982839-29982858 None:intergenic 15.0%
!! ACTTGAAACATAAATTTAAA+AGG + chr6_3:29983169-29983188 None:intergenic 15.0%
!!! TTTTAAATTTATGTTTCAAG+TGG - chr6_3:29983168-29983187 Msa0947360:intron 15.0%
!! AATTCTTTACTGAAAAATTT+GGG + chr6_3:29983577-29983596 None:intergenic 15.0%
!! TAATTCTTTACTGAAAAATT+TGG + chr6_3:29983578-29983597 None:intergenic 15.0%
!!! TTTTATCGATTTTTATTCTT+GGG - chr6_3:29984340-29984359 Msa0947360:CDS 15.0%
!!! TTTTCCATATAATTAAGTTT+GGG + chr6_3:29985335-29985354 None:intergenic 15.0%
!!! ATTTTCCATATAATTAAGTT+TGG + chr6_3:29985336-29985355 None:intergenic 15.0%
!!! TCCTTTTTTTTTTGATAAGT+TGG - chr6_3:29981744-29981763 Msa0947360:exon 20.0%
!! ACCAACTTATCAAAAAAAAA+AGG + chr6_3:29981748-29981767 None:intergenic 20.0%
!!! TTTTGATTCAAATCTTCTAT+TGG - chr6_3:29981784-29981803 Msa0947360:CDS 20.0%
!!! CTACTTTGAATAATTTTCTA+TGG - chr6_3:29982791-29982810 Msa0947360:CDS 20.0%
!!! GAATGTATCGATTTTTTTTA+TGG - chr6_3:29982863-29982882 Msa0947360:intron 20.0%
!!! GTTTATAAAAGTACATTTGA+AGG - chr6_3:29982986-29983005 Msa0947360:intron 20.0%
!! ATGAATACATATTTAAGCAA+CGG + chr6_3:29983088-29983107 None:intergenic 20.0%
!!! AGTCTTGTAATAAGAAAATA+CGG - chr6_3:29983490-29983509 Msa0947360:intron 20.0%
!! ATTGTATGAAAATTTGAACA+TGG + chr6_3:29983979-29983998 None:intergenic 20.0%
!!! CTTTTATCGATTTTTATTCT+TGG - chr6_3:29984339-29984358 Msa0947360:CDS 20.0%
!! TTTCCATATAATTAAGTTTG+GGG + chr6_3:29985334-29985353 None:intergenic 20.0%
!!! TTGAAAACTTGTTTCTAATA+TGG + chr6_3:29987088-29987107 None:intergenic 20.0%
!! AGGATGTAAAATTTACAAAA+TGG + chr6_3:29987158-29987177 None:intergenic 20.0%
!! TGATATATGATACAACATTA+TGG - chr6_3:29987244-29987263 Msa0947360:five_prime_UTR 20.0%
!! TTTGAGATTGAGATAAGAAA+GGG + chr6_3:29981626-29981645 None:intergenic 25.0%
!!! ATTTCATACTTTGAGATTTG+AGG - chr6_3:29981846-29981865 Msa0947360:CDS 25.0%
!!! TTTCATACTTTGAGATTTGA+GGG - chr6_3:29981847-29981866 Msa0947360:CDS 25.0%
! ATGTGTGTATACTGAATTAT+TGG + chr6_3:29981876-29981895 None:intergenic 25.0%
! TATCTGTAGCAGTAAAATTT+AGG - chr6_3:29981895-29981914 Msa0947360:CDS 25.0%
! TGATAATTGATACAAGAAAG+TGG - chr6_3:29981959-29981978 Msa0947360:CDS 25.0%
! TTCTTTAGTGTATTTGTGAT+GGG - chr6_3:29982075-29982094 Msa0947360:CDS 25.0%
! TGTCTGTAGTCTATAATATT+CGG - chr6_3:29982151-29982170 Msa0947360:CDS 25.0%
! TAAAAATCTGCAATGGAATA+TGG - chr6_3:29982597-29982616 Msa0947360:CDS 25.0%
!! ATTTTTCGTAACCATGTTAT+TGG + chr6_3:29982723-29982742 None:intergenic 25.0%
!! GTACTTTTATAAACATAGAG+CGG + chr6_3:29982980-29982999 None:intergenic 25.0%
! AATAAGCTGAAAACAACTTA+CGG - chr6_3:29983752-29983771 Msa0947360:CDS 25.0%
! AATTCTTTCACAAAATCAAC+AGG + chr6_3:29983917-29983936 None:intergenic 25.0%
!! AATTCGTAAATCAGTTTTAC+TGG + chr6_3:29983950-29983969 None:intergenic 25.0%
! TGAGAATTTGAACAAGTTAA+AGG + chr6_3:29984033-29984052 None:intergenic 25.0%
! ACGGAATCAAAATTCAATAA+TGG - chr6_3:29984122-29984141 Msa0947360:intron 25.0%
! TATCTCTAGCAAATGAAAAT+TGG + chr6_3:29984152-29984171 None:intergenic 25.0%
! GAAACAACGTGAAATTTATT+AGG + chr6_3:29984209-29984228 None:intergenic 25.0%
!! AGAACTTGATGATATAATGT+GGG + chr6_3:29984413-29984432 None:intergenic 25.0%
!! AAGAACTTGATGATATAATG+TGG + chr6_3:29984414-29984433 None:intergenic 25.0%
!!! ACGTAAGATTATTTCTGAAA+AGG + chr6_3:29984552-29984571 None:intergenic 25.0%
! TCATTAAGGAAAAAACACTA+TGG + chr6_3:29984895-29984914 None:intergenic 25.0%
! TATACATTCCAGAAATTAAC+TGG - chr6_3:29985121-29985140 Msa0947360:intron 25.0%
! ATAAGTATCCAGTTAATTTC+TGG + chr6_3:29985132-29985151 None:intergenic 25.0%
! AGAAATTAACTGGATACTTA+TGG - chr6_3:29985131-29985150 Msa0947360:intron 25.0%
!! ATATAATTAAGTTTGGGGTA+GGG + chr6_3:29985329-29985348 None:intergenic 25.0%
!!! TTTCAGTTTTTTCTGAAAGA+GGG + chr6_3:29985707-29985726 None:intergenic 25.0%
!!! ATTTCAGTTTTTTCTGAAAG+AGG + chr6_3:29985708-29985727 None:intergenic 25.0%
! TTTCAATTGAAAACATGCAT+AGG + chr6_3:29985896-29985915 None:intergenic 25.0%
! AATACTCGGAAAACTTATTA+CGG + chr6_3:29985920-29985939 None:intergenic 25.0%
!! TAATAAGTTTTCCGAGTATT+TGG - chr6_3:29985920-29985939 Msa0947360:intron 25.0%
! AAAAGGAATATTGTAGCAAT+CGG + chr6_3:29986032-29986051 None:intergenic 25.0%
!! CAATATTCCTTTTGTTCTTT+TGG - chr6_3:29986039-29986058 Msa0947360:intron 25.0%
! ACAACAAAGTTTCATTGAAA+TGG - chr6_3:29986204-29986223 Msa0947360:intron 25.0%
! TCATCTCATACAAAGTATAA+TGG - chr6_3:29986517-29986536 Msa0947360:intron 25.0%
! GATATATTATGTCTAGATTG+TGG - chr6_3:29987021-29987040 Msa0947360:intron 25.0%
! AATATGGATTTGTAACTACT+AGG + chr6_3:29987072-29987091 None:intergenic 25.0%
!!! TTAGAAACAAGTTTTCAAGA+TGG - chr6_3:29987090-29987109 Msa0947360:intron 25.0%
ACCAAACTCATATTCACATA+TGG - chr6_3:29981549-29981568 Msa0947360:three_prime_UTR 30.0%
TCCATATGTGAATATGAGTT+TGG + chr6_3:29981553-29981572 None:intergenic 30.0%
! GTTTGAGATTGAGATAAGAA+AGG + chr6_3:29981627-29981646 None:intergenic 30.0%
!! TTCATACTTTGAGATTTGAG+GGG - chr6_3:29981848-29981867 Msa0947360:CDS 30.0%
CTTCTTTAGTGTATTTGTGA+TGG - chr6_3:29982074-29982093 Msa0947360:CDS 30.0%
AAATTCAGATTGCTTGCAAT+CGG + chr6_3:29982343-29982362 None:intergenic 30.0%
AGTTTAGTTATCGGAAAAGT+CGG + chr6_3:29982435-29982454 None:intergenic 30.0%
! AAAGTACCTAGCTTGAAATA+TGG + chr6_3:29982560-29982579 None:intergenic 30.0%
AATACTTCACACCAATAACA+TGG - chr6_3:29982709-29982728 Msa0947360:CDS 30.0%
CAAAGATAGTTTCTTCATCA+TGG + chr6_3:29983027-29983046 None:intergenic 30.0%
CATGATGAAGAAACTATCTT+TGG - chr6_3:29983025-29983044 Msa0947360:intron 30.0%
!!! GTGTTTTTTCGTTGATTTTC+TGG - chr6_3:29983047-29983066 Msa0947360:intron 30.0%
ATCATGATGCAATTATTGTC+AGG - chr6_3:29983215-29983234 Msa0947360:intron 30.0%
ATTCGGAAGCAAGTTAAATT+TGG + chr6_3:29983279-29983298 None:intergenic 30.0%
AATAAGAAAATACGGAGAGT+CGG - chr6_3:29983498-29983517 Msa0947360:intron 30.0%
!!! TGCATTTGCATTTTAAAGCT+GGG + chr6_3:29983536-29983555 None:intergenic 30.0%
! ACTGAAAAATTTGGGAGTAT+GGG + chr6_3:29983569-29983588 None:intergenic 30.0%
TACTGAAAAATTTGGGAGTA+TGG + chr6_3:29983570-29983589 None:intergenic 30.0%
TTAAGCTGTTTATCCAAACA+GGG + chr6_3:29983603-29983622 None:intergenic 30.0%
ATTAAGCTGTTTATCCAAAC+AGG + chr6_3:29983604-29983623 None:intergenic 30.0%
GTGTATCCATAAGAACTTAT+GGG + chr6_3:29983652-29983671 None:intergenic 30.0%
AGTGTATCCATAAGAACTTA+TGG + chr6_3:29983653-29983672 None:intergenic 30.0%
!! GTTGTTTTCATAAGCTATCT+TGG - chr6_3:29983718-29983737 Msa0947360:CDS 30.0%
CTTGTTCAAATTCTCAGTTA+CGG - chr6_3:29984037-29984056 Msa0947360:intron 30.0%
GGTATCAGGATTAAAAGTTA+CGG - chr6_3:29984103-29984122 Msa0947360:intron 30.0%
! ATAAATTTCACGTTGTTTCC+AGG - chr6_3:29984210-29984229 Msa0947360:intron 30.0%
AAAAGCCAGATGATTACAAT+CGG + chr6_3:29984324-29984343 None:intergenic 30.0%
! GAGATAGCAAAGACTATTTT+TGG + chr6_3:29984390-29984409 None:intergenic 30.0%
! GAACTTGATGATATAATGTG+GGG + chr6_3:29984412-29984431 None:intergenic 30.0%
! ATTTTACTGCTTCGTCAATA+AGG - chr6_3:29984634-29984653 Msa0947360:intron 30.0%
! TTTTACTGCTTCGTCAATAA+GGG - chr6_3:29984635-29984654 Msa0947360:intron 30.0%
TTACGAAATCTCGTGTAAAT+TGG + chr6_3:29984694-29984713 None:intergenic 30.0%
!! TTTTGTTATATACCCGTGTT+TGG - chr6_3:29984753-29984772 Msa0947360:intron 30.0%
ATGTATTGCATAACCAAACA+CGG + chr6_3:29984769-29984788 None:intergenic 30.0%
TGTTTGGTTATGCAATACAT+GGG - chr6_3:29984769-29984788 Msa0947360:intron 30.0%
! TTTTAGACAAAAAAGCTGCT+TGG + chr6_3:29984795-29984814 None:intergenic 30.0%
AAGGTAGCAATAACAAAAAC+AGG + chr6_3:29984976-29984995 None:intergenic 30.0%
!!! TGTTTTTGTTATTGCTACCT+TGG - chr6_3:29984975-29984994 Msa0947360:intron 30.0%
TTTCAGGACATAACCTTAAT+TGG - chr6_3:29985180-29985199 Msa0947360:intron 30.0%
ACCTTAATTGGAAATGCTTA+TGG - chr6_3:29985192-29985211 Msa0947360:intron 30.0%
ACCATAAGCATTTCCAATTA+AGG + chr6_3:29985196-29985215 None:intergenic 30.0%
!! AGCTTTGAAACCAAAACTAT+AGG - chr6_3:29985247-29985266 Msa0947360:intron 30.0%
!! GCTTTGAAACCAAAACTATA+GGG - chr6_3:29985248-29985267 Msa0947360:intron 30.0%
! CATATAATTAAGTTTGGGGT+AGG + chr6_3:29985330-29985349 None:intergenic 30.0%
CTACCCCAAACTTAATTATA+TGG - chr6_3:29985328-29985347 Msa0947360:CDS 30.0%
CGATAATTAACTGTTGAACT+TGG + chr6_3:29985535-29985554 None:intergenic 30.0%
ATGTAGTGCTTCTGTTATTA+TGG - chr6_3:29985743-29985762 Msa0947360:CDS 30.0%
AAAGGAATATTGTAGCAATC+GGG + chr6_3:29986031-29986050 None:intergenic 30.0%
CATAACAATCAAGAAGAAGA+AGG + chr6_3:29986138-29986157 None:intergenic 30.0%
TCTTGATTGTTATGTATGTG+TGG - chr6_3:29986144-29986163 Msa0947360:intron 30.0%
GTTTCATTGAAATGGTTACT+AGG - chr6_3:29986212-29986231 Msa0947360:intron 30.0%
ATTGAAATGGTTACTAGGTT+TGG - chr6_3:29986217-29986236 Msa0947360:intron 30.0%
TTGAAATGGTTACTAGGTTT+GGG - chr6_3:29986218-29986237 Msa0947360:intron 30.0%
TATAGGTGCATTGTTAGATA+CGG - chr6_3:29986455-29986474 Msa0947360:intron 30.0%
! TATAATGGAGTTTATCCAGA+TGG - chr6_3:29986532-29986551 Msa0947360:intron 30.0%
TTTAGATTTAATCCAAGCCA+AGG - chr6_3:29986829-29986848 Msa0947360:intron 30.0%
AAAAAGCTTGTGATCGATAT+GGG - chr6_3:29986917-29986936 Msa0947360:intron 30.0%
! ATTGTGGAATTTTACCACTT+AGG - chr6_3:29987037-29987056 Msa0947360:intron 30.0%
CAATGATGAAATCAATGATC+AGG + chr6_3:29987118-29987137 None:intergenic 30.0%
TCATTCAAGTATGGTGAAAA+AGG + chr6_3:29987178-29987197 None:intergenic 30.0%
! TTTTCACCATACTTGAATGA+TGG - chr6_3:29987178-29987197 Msa0947360:CDS 30.0%
ATTTCGAGAAGATGAAGCTA+TGG + chr6_3:29981584-29981603 None:intergenic 35.0%
AGATTGAGATAAGAAAGGGT+CGG + chr6_3:29981622-29981641 None:intergenic 35.0%
GACAGTTATGATTTCAAGCT+CGG - chr6_3:29982217-29982236 Msa0947360:CDS 35.0%
TTGCAAGCAATCTGAATTTG+AGG - chr6_3:29982344-29982363 Msa0947360:CDS 35.0%
TGCAAGCAATCTGAATTTGA+GGG - chr6_3:29982345-29982364 Msa0947360:CDS 35.0%
TCCGATAACTAAACTCCATT+AGG - chr6_3:29982440-29982459 Msa0947360:CDS 35.0%
CCCTAATGGAGTTTAGTTAT+CGG + chr6_3:29982444-29982463 None:intergenic 35.0%
CCGATAACTAAACTCCATTA+GGG - chr6_3:29982441-29982460 Msa0947360:CDS 35.0%
TAAAGGCAAACCCAATTCAA+GGG + chr6_3:29982473-29982492 None:intergenic 35.0%
TCGAATTCAAATTGCGTTAG+TGG + chr6_3:29982646-29982665 None:intergenic 35.0%
ACTAACGCAATTTGAATTCG+AGG - chr6_3:29982645-29982664 Msa0947360:CDS 35.0%
CTAACGCAATTTGAATTCGA+GGG - chr6_3:29982646-29982665 Msa0947360:CDS 35.0%
TAACGCAATTTGAATTCGAG+GGG - chr6_3:29982647-29982666 Msa0947360:CDS 35.0%
AGTTTAGTTATTGGCAAAGC+CGG - chr6_3:29982684-29982703 Msa0947360:CDS 35.0%
! TATTGGTGTGAAGTATTCAC+CGG + chr6_3:29982706-29982725 None:intergenic 35.0%
CATTTCAGTGTAGACTTCTT+TGG - chr6_3:29982747-29982766 Msa0947360:CDS 35.0%
TAGACTTCTTTGGATTTCCA+CGG - chr6_3:29982757-29982776 Msa0947360:CDS 35.0%
! TTTGGATTTCCACGGTTTTT+CGG - chr6_3:29982765-29982784 Msa0947360:CDS 35.0%
!! TGTCATGGATTAACTTGTCT+AGG - chr6_3:29982897-29982916 Msa0947360:intron 35.0%
CTGTTAGCATATCAAAGCTT+CGG - chr6_3:29982926-29982945 Msa0947360:intron 35.0%
AGATAGTTTCTTCATCATGG+TGG + chr6_3:29983024-29983043 None:intergenic 35.0%
AATACCTTCACCGTTATCAT+CGG + chr6_3:29983122-29983141 None:intergenic 35.0%
ATGATGCAATTATTGTCAGG+TGG - chr6_3:29983218-29983237 Msa0947360:intron 35.0%
!!! CTGCATTTGCATTTTAAAGC+TGG + chr6_3:29983537-29983556 None:intergenic 35.0%
GTAAAGAATTATGCCCTGTT+TGG - chr6_3:29983587-29983606 Msa0947360:CDS 35.0%
GCTTATCCCATAAGTTCTTA+TGG - chr6_3:29983643-29983662 Msa0947360:CDS 35.0%
AGACTGTTTATGAGAGCTTA+TGG + chr6_3:29983796-29983815 None:intergenic 35.0%
ACCAAGAATTGCACTTCTAA+GGG + chr6_3:29983869-29983888 None:intergenic 35.0%
TACCAAGAATTGCACTTCTA+AGG + chr6_3:29983870-29983889 None:intergenic 35.0%
GGATCTATAATACGATACAC+TGG - chr6_3:29984361-29984380 Msa0947360:CDS 35.0%
TTCATCAAGACTAGTACTCA+GGG - chr6_3:29984432-29984451 Msa0947360:CDS 35.0%
CACGTAAGATAACAACTTGT+AGG + chr6_3:29984512-29984531 None:intergenic 35.0%
CTACAAGTTGTTATCTTACG+TGG - chr6_3:29984510-29984529 Msa0947360:CDS 35.0%
!!! TGTCATTTTTGTGTCTTACC+AGG - chr6_3:29984582-29984601 Msa0947360:intron 35.0%
AAGATCTGCAAACATAGCTT+CGG + chr6_3:29984610-29984629 None:intergenic 35.0%
CGGGTATATAACAAAAGCAA+AGG + chr6_3:29984749-29984768 None:intergenic 35.0%
TGTATTGCATAACCAAACAC+GGG + chr6_3:29984768-29984787 None:intergenic 35.0%
GTGTTTGGTTATGCAATACA+TGG - chr6_3:29984768-29984787 Msa0947360:intron 35.0%
! AGTTTTTACGACTCAATACC+TGG - chr6_3:29984835-29984854 Msa0947360:intron 35.0%
! AATGTTTTACCTTGTGTTGC+AGG - chr6_3:29984937-29984956 Msa0947360:intron 35.0%
ACAAAAACAGGCCAAAATAC+AGG + chr6_3:29984964-29984983 None:intergenic 35.0%
! TTGACTCTTGCTGTAACAAT+CGG - chr6_3:29985156-29985175 Msa0947360:intron 35.0%
! ATGCAATCTCCCTATAGTTT+TGG + chr6_3:29985260-29985279 None:intergenic 35.0%
TATGCAAAGTTCAACTCGTT+TGG + chr6_3:29985455-29985474 None:intergenic 35.0%
! GAGCTCAAGTTTGACTTATT+TGG - chr6_3:29985501-29985520 Msa0947360:CDS 35.0%
! ACTTTTCAGCTTATAGGTTG+GGG + chr6_3:29985610-29985629 None:intergenic 35.0%
! CACTTTTCAGCTTATAGGTT+GGG + chr6_3:29985611-29985630 None:intergenic 35.0%
!! TCACTTTTCAGCTTATAGGT+TGG + chr6_3:29985612-29985631 None:intergenic 35.0%
!!! TCAGTCACTTTTCAGCTTAT+AGG + chr6_3:29985616-29985635 None:intergenic 35.0%
TGCATAGGCAAAATACAGAT+TGG + chr6_3:29985881-29985900 None:intergenic 35.0%
GTTCATAACCACATTTCTGA+TGG - chr6_3:29985971-29985990 Msa0947360:intron 35.0%
CACTAGTCATAATCTTTGTC+TGG - chr6_3:29985994-29986013 Msa0947360:intron 35.0%
CGACAATCCAAAAGAACAAA+AGG + chr6_3:29986049-29986068 None:intergenic 35.0%
! TTGTTCTTTTGGATTGTCGA+AGG - chr6_3:29986050-29986069 Msa0947360:intron 35.0%
GTTATGTATGTGTGGCATTA+CGG - chr6_3:29986152-29986171 Msa0947360:intron 35.0%
! GGTCTTTGTTTGCGTAAAAT+CGG - chr6_3:29986361-29986380 Msa0947360:intron 35.0%
ATGCACCTATACATTCGATA+TGG + chr6_3:29986446-29986465 None:intergenic 35.0%
ATAGGTGCATTGTTAGATAC+GGG - chr6_3:29986456-29986475 Msa0947360:intron 35.0%
AAGGACATTAAAAGGGATGA+TGG - chr6_3:29986482-29986501 Msa0947360:intron 35.0%
! TCTGAAGCTTCTTCATTTGA+TGG - chr6_3:29986581-29986600 Msa0947360:intron 35.0%
AAGCTTCTTCATTTGATGGA+AGG - chr6_3:29986585-29986604 Msa0947360:intron 35.0%
TTCTTCATTTGATGGAAGGA+TGG - chr6_3:29986589-29986608 Msa0947360:intron 35.0%
ATCAACTCCAAGCTTGATTT+CGG - chr6_3:29986637-29986656 Msa0947360:intron 35.0%
GATATCAACATCTTCTTGCT+CGG + chr6_3:29986663-29986682 None:intergenic 35.0%
GCTGGAGTTGCATATATAAT+GGG - chr6_3:29986854-29986873 Msa0947360:intron 35.0%
GAAAAAGCTTGTGATCGATA+TGG - chr6_3:29986916-29986935 Msa0947360:intron 35.0%
CTAGGAATATCTAACCTAAG+TGG + chr6_3:29987054-29987073 None:intergenic 35.0%
CAATGACCATCATTCAAGTA+TGG + chr6_3:29987187-29987206 None:intergenic 35.0%
GAAGATGAAGCTATGGATTC+TGG + chr6_3:29981577-29981596 None:intergenic 40.0%
ATCTTCTCGAAATCCTTCTC+AGG - chr6_3:29981591-29981610 Msa0947360:three_prime_UTR 40.0%
CTTTGTGGATGGAAAAACTG+TGG - chr6_3:29982104-29982123 Msa0947360:CDS 40.0%
TGGATGGAAAAACTGTGGTT+GGG - chr6_3:29982109-29982128 Msa0947360:CDS 40.0%
ACTGGTCGTTGTATTGAGAT+CGG + chr6_3:29982291-29982310 None:intergenic 40.0%
TTCACGTAGTCAGATATCAC+TGG + chr6_3:29982309-29982328 None:intergenic 40.0%
TATCTGACTACGTGAATGCA+AGG - chr6_3:29982313-29982332 Msa0947360:CDS 40.0%
GCAAGCAATCTGAATTTGAG+GGG - chr6_3:29982346-29982365 Msa0947360:CDS 40.0%
AAAGGCAAACCCAATTCAAG+GGG + chr6_3:29982472-29982491 None:intergenic 40.0%
CTAAAGGCAAACCCAATTCA+AGG + chr6_3:29982474-29982493 None:intergenic 40.0%
GAATTGGGTTTGCCTTTAGT+CGG - chr6_3:29982475-29982494 Msa0947360:CDS 40.0%
! TGCTGGAAATTACCGACTAA+AGG + chr6_3:29982490-29982509 None:intergenic 40.0%
CCAATAACTAAACTCCGTCA+CGG + chr6_3:29982678-29982697 None:intergenic 40.0%
AAGTAGAAACCGAAAAACCG+TGG + chr6_3:29982777-29982796 None:intergenic 40.0%
!! CAAAGCTTCGGTGTTGTATA+TGG - chr6_3:29982938-29982957 Msa0947360:intron 40.0%
TTCTCCAAAAACGTCTTCAG+CGG + chr6_3:29983371-29983390 None:intergenic 40.0%
!! CGTTTTTGGAGAAGCACAAA+CGG - chr6_3:29983378-29983397 Msa0947360:intron 40.0%
! CTTCTTGTTGTCGTACTGTT+TGG - chr6_3:29983413-29983432 Msa0947360:intron 40.0%
! TTCTCCAGCTATTTCAGGTA+AGG - chr6_3:29983466-29983485 Msa0947360:intron 40.0%
ACTACCTTACCTGAAATAGC+TGG + chr6_3:29983473-29983492 None:intergenic 40.0%
!! AAAATACGGAGAGTCGGTTT+TGG - chr6_3:29983504-29983523 Msa0947360:intron 40.0%
!! AGTCTCAGAAGTGCTTATGT+TGG - chr6_3:29983811-29983830 Msa0947360:intron 40.0%
TTTCACAAAATCAACAGGCG+AGG + chr6_3:29983912-29983931 None:intergenic 40.0%
TTCTTCTTACCCTACAGTTC+TGG - chr6_3:29984076-29984095 Msa0947360:intron 40.0%
CTATTTGCTCTCCAACATTG+CGG - chr6_3:29984270-29984289 Msa0947360:intron 40.0%
!! TTGCACCGATTGTAATCATC+TGG - chr6_3:29984316-29984335 Msa0947360:CDS 40.0%
CTTCATCAAGACTAGTACTC+AGG - chr6_3:29984431-29984450 Msa0947360:CDS 40.0%
TAGGTCAAGAACTAACGTAC+CGG + chr6_3:29984493-29984512 None:intergenic 40.0%
GAAGCTATGTTTGCAGATCT+TGG - chr6_3:29984609-29984628 Msa0947360:intron 40.0%
GAAACTCGGAATTACTAACC+AGG + chr6_3:29984856-29984875 None:intergenic 40.0%
ACACTATGGATTCGTCAACA+AGG + chr6_3:29984881-29984900 None:intergenic 40.0%
CACACCTCGAAACACATATT+TGG - chr6_3:29985093-29985112 Msa0947360:intron 40.0%
CTGTCCAAATATGTGTTTCG+AGG + chr6_3:29985100-29985119 None:intergenic 40.0%
TGCTGTAACAATCGGATTTC+AGG - chr6_3:29985164-29985183 Msa0947360:intron 40.0%
! GATTCAAACTGCTTTCGAGT+TGG - chr6_3:29985561-29985580 Msa0947360:intron 40.0%
!! AAACTGCTTTCGAGTTGGTT+CGG - chr6_3:29985566-29985585 Msa0947360:intron 40.0%
!! CTTTTCAGCTTATAGGTTGG+GGG + chr6_3:29985609-29985628 None:intergenic 40.0%
GTGAAATGAACCCATCAAGA+GGG + chr6_3:29985646-29985665 None:intergenic 40.0%
AGTGAAATGAACCCATCAAG+AGG + chr6_3:29985647-29985666 None:intergenic 40.0%
! TTTTCCGAGTATTTGGTTGC+AGG - chr6_3:29985927-29985946 Msa0947360:intron 40.0%
AAGTCCTGCAACCAAATACT+CGG + chr6_3:29985934-29985953 None:intergenic 40.0%
AAGAAGAAGGACAAGACAAG+AGG + chr6_3:29986125-29986144 None:intergenic 40.0%
!! AGGAAGGTTTGTTACGAAGT+GGG + chr6_3:29986324-29986343 None:intergenic 40.0%
AAACCTTCCTGCATTTCACA+AGG - chr6_3:29986334-29986353 Msa0947360:intron 40.0%
CCAATCAGAAAACGTTCTTC+AGG + chr6_3:29986407-29986426 None:intergenic 40.0%
! CCTGAAGAACGTTTTCTGAT+TGG - chr6_3:29986404-29986423 Msa0947360:intron 40.0%
CTATACATTCGATATGGTCG+TGG + chr6_3:29986440-29986459 None:intergenic 40.0%
CACGACCATATCGAATGTAT+AGG - chr6_3:29986438-29986457 Msa0947360:intron 40.0%
CATTGTTAGATACGGGTACA+AGG - chr6_3:29986463-29986482 Msa0947360:intron 40.0%
ACGGGTACAAGGACATTAAA+AGG - chr6_3:29986474-29986493 Msa0947360:intron 40.0%
CGGGTACAAGGACATTAAAA+GGG - chr6_3:29986475-29986494 Msa0947360:intron 40.0%
AATGGAGTTTATCCAGATGG+AGG - chr6_3:29986535-29986554 Msa0947360:intron 40.0%
GGGTTATAGATCTGCTACTA+GGG + chr6_3:29986697-29986716 None:intergenic 40.0%
AGGGTTATAGATCTGCTACT+AGG + chr6_3:29986698-29986717 None:intergenic 40.0%
! CGTCAAAAGTTGATTGCAAG+CGG + chr6_3:29986724-29986743 None:intergenic 40.0%
ATGAAAACCCGCAAGTAAGA+AGG - chr6_3:29986744-29986763 Msa0947360:intron 40.0%
TAACAGCATGATCCAATCCA+GGG + chr6_3:29986799-29986818 None:intergenic 40.0%
TTAACAGCATGATCCAATCC+AGG + chr6_3:29986800-29986819 None:intergenic 40.0%
AGATTTAATCCAAGCCAAGG+AGG - chr6_3:29986832-29986851 Msa0947360:intron 40.0%
GGCTGGAGTTGCATATATAA+TGG - chr6_3:29986853-29986872 Msa0947360:intron 40.0%
GTTTCTGCGAAAGAATTGCA+GGG - chr6_3:29986946-29986965 Msa0947360:intron 40.0%
TTTCTGCGAAAGAATTGCAG+GGG - chr6_3:29986947-29986966 Msa0947360:intron 40.0%
ACTTCGATAAGACTGATGTG+AGG + chr6_3:29986995-29987014 None:intergenic 40.0%
! CACATCAGTCTTATCGAAGT+TGG - chr6_3:29986995-29987014 Msa0947360:intron 40.0%
!! TGTGATGGGTTTGAGCTTTG+TGG - chr6_3:29982089-29982108 Msa0947360:CDS 45.0%
! ATGGGTTTGAGCTTTGTGGA+TGG - chr6_3:29982093-29982112 Msa0947360:CDS 45.0%
GTGGATGGAAAAACTGTGGT+TGG - chr6_3:29982108-29982127 Msa0947360:CDS 45.0%
ATGGAAAAACTGTGGTTGGG+AGG - chr6_3:29982112-29982131 Msa0947360:CDS 45.0%
TGGAAAAACTGTGGTTGGGA+GGG - chr6_3:29982113-29982132 Msa0947360:CDS 45.0%
GTTAGTGTGTCAGTGGTTGT+TGG - chr6_3:29982184-29982203 Msa0947360:CDS 45.0%
GTCGTTGTATTGAGATCGGA+TGG + chr6_3:29982287-29982306 None:intergenic 45.0%
ACAATGACTAATCTCCGACG+GGG + chr6_3:29982403-29982422 None:intergenic 45.0%
CACAATGACTAATCTCCGAC+GGG + chr6_3:29982404-29982423 None:intergenic 45.0%
GCACAATGACTAATCTCCGA+CGG + chr6_3:29982405-29982424 None:intergenic 45.0%
CACTCACACAGTTGTCACAT+CGG - chr6_3:29982508-29982527 Msa0947360:CDS 45.0%
GGAGGTTGTTGGATCAAGAT+CGG - chr6_3:29982529-29982548 Msa0947360:CDS 45.0%
GTTGTTGGATCAAGATCGGA+CGG - chr6_3:29982533-29982552 Msa0947360:CDS 45.0%
GACGGTCCATATTTCAAGCT+AGG - chr6_3:29982551-29982570 Msa0947360:CDS 45.0%
! CCGTGACGGAGTTTAGTTAT+TGG - chr6_3:29982675-29982694 Msa0947360:CDS 45.0%
ATGGTTCTCTGCAGTTGTCA+TGG - chr6_3:29982882-29982901 Msa0947360:intron 45.0%
!! CTATTGAGCGCCGATGATAA+CGG - chr6_3:29983109-29983128 Msa0947360:intron 45.0%
! CTCTTTATTCGCTGCTTTGC+AGG - chr6_3:29983249-29983268 Msa0947360:intron 45.0%
!! TCATCGGCAGCTTGTTGATT+CGG + chr6_3:29983296-29983315 None:intergenic 45.0%
GAGCTGTCGTCGTACAAATA+CGG - chr6_3:29983317-29983336 Msa0947360:intron 45.0%
!! TTTGGTGCTTGCATGGTCAT+AGG - chr6_3:29983431-29983450 Msa0947360:intron 45.0%
! GTGCTTTCTCCAGCTATTTC+AGG - chr6_3:29983461-29983480 Msa0947360:intron 45.0%
! TGCACTTCTAAGGGCTTGTT+TGG + chr6_3:29983860-29983879 None:intergenic 45.0%
! GCCCTTAGAAGTGCAATTCT+TGG - chr6_3:29983865-29983884 Msa0947360:intron 45.0%
! TTACCCTACAGTTCTGGCAT+CGG - chr6_3:29984082-29984101 Msa0947360:intron 45.0%
ATACCGATGCCAGAACTGTA+GGG + chr6_3:29984088-29984107 None:intergenic 45.0%
CTAGCATGTCTCATACTGGT+TGG - chr6_3:29984246-29984265 Msa0947360:intron 45.0%
CGCAATGTTGGAGAGCAAAT+AGG + chr6_3:29984272-29984291 None:intergenic 45.0%
TCAAGACTAGTACTCAGGGT+TGG - chr6_3:29984436-29984455 Msa0947360:CDS 45.0%
ACTCAGGGTTGGATTTCTCT+CGG - chr6_3:29984447-29984466 Msa0947360:CDS 45.0%
GGGATACTTCTCTGTATCAC+CGG - chr6_3:29984471-29984490 Msa0947360:CDS 45.0%
TCGTCAACAAGGCAGAAACT+CGG + chr6_3:29984870-29984889 None:intergenic 45.0%
AATACAGGTCCTGCAACACA+AGG + chr6_3:29984949-29984968 None:intergenic 45.0%
! GTGTTGCAGGACCTGTATTT+TGG - chr6_3:29984950-29984969 Msa0947360:intron 45.0%
AGCTTGACTCCCAACAATAG+CGG + chr6_3:29985001-29985020 None:intergenic 45.0%
TGCATGACACTGCTTGATGA+TGG + chr6_3:29985043-29985062 None:intergenic 45.0%
ATCAAGCAGTGTCATGCACT+TGG - chr6_3:29985045-29985064 Msa0947360:intron 45.0%
! TGCAGGACTTGCTTGTATGA+CGG - chr6_3:29985944-29985963 Msa0947360:intron 45.0%
GACTAGTGCCATCAGAAATG+TGG + chr6_3:29985982-29986001 None:intergenic 45.0%
TGTGGCATTACGGTATTCGT+AGG - chr6_3:29986162-29986181 Msa0947360:intron 45.0%
CACGGACAATTCCTAGACTA+GGG + chr6_3:29986244-29986263 None:intergenic 45.0%
ACACGGACAATTCCTAGACT+AGG + chr6_3:29986245-29986264 None:intergenic 45.0%
AGTAGATGAGTCCAATCCCT+GGG + chr6_3:29986268-29986287 None:intergenic 45.0%
AGGGATTGGACTCATCTACT+CGG - chr6_3:29986268-29986287 Msa0947360:intron 45.0%
ATCTACTCGGAACTTGCAAC+TGG - chr6_3:29986281-29986300 Msa0947360:intron 45.0%
ACGAAGTGGGTGAATATCGA+TGG + chr6_3:29986311-29986330 None:intergenic 45.0%
!! CAGGAAGGTTTGTTACGAAG+TGG + chr6_3:29986325-29986344 None:intergenic 45.0%
ACACCTTGTGAAATGCAGGA+AGG + chr6_3:29986340-29986359 None:intergenic 45.0%
TCCTGCATTTCACAAGGTGT+TGG - chr6_3:29986340-29986359 Msa0947360:intron 45.0%
ACCAACACCTTGTGAAATGC+AGG + chr6_3:29986344-29986363 None:intergenic 45.0%
TCAGGTGAGACATATGGTAC+AGG + chr6_3:29986389-29986408 None:intergenic 45.0%
CGTTCTTCAGGTGAGACATA+TGG + chr6_3:29986395-29986414 None:intergenic 45.0%
GCTTCAGAACTCGAGAATTG+CGG + chr6_3:29986569-29986588 None:intergenic 45.0%
GATGGAAGGATGGCTGTTAT+AGG - chr6_3:29986599-29986618 Msa0947360:intron 45.0%
!! TGGAGTTGATTCGAAGCTTC+TGG + chr6_3:29986627-29986646 None:intergenic 45.0%
!! AAGTAAGAAGGCGTCGAGTA+AGG - chr6_3:29986756-29986775 Msa0947360:intron 45.0%
TTTCAACTGCCTAACAACCC+TGG - chr6_3:29986779-29986798 Msa0947360:intron 45.0%
TGATCCAATCCAGGGTTGTT+AGG + chr6_3:29986791-29986810 None:intergenic 45.0%
AATGGGACACTCGTATGTGA+AGG - chr6_3:29986871-29986890 Msa0947360:intron 45.0%
CGTTTCTGCGAAAGAATTGC+AGG - chr6_3:29986945-29986964 Msa0947360:intron 45.0%
TCACGCAGTTAGTGTGTCAG+TGG - chr6_3:29982177-29982196 Msa0947360:CDS 50.0%
! GGTTAGCCACCTTTAGTGTG+TGG + chr6_3:29982375-29982394 None:intergenic 50.0%
TGGCTAACCAAATTCCCCGT+CGG - chr6_3:29982386-29982405 Msa0947360:CDS 50.0%
CTAATCTCCGACGGGGAATT+TGG + chr6_3:29982396-29982415 None:intergenic 50.0%
TTCAAGGGGAGACTCCCTAA+TGG + chr6_3:29982458-29982477 None:intergenic 50.0%
TAGGGAGTCTCCCCTTGAAT+TGG - chr6_3:29982459-29982478 Msa0947360:CDS 50.0%
AGGGAGTCTCCCCTTGAATT+GGG - chr6_3:29982460-29982479 Msa0947360:CDS 50.0%
TGTGACAACTGTGTGAGTGC+TGG + chr6_3:29982507-29982526 None:intergenic 50.0%
TCACACAGTTGTCACATCGG+AGG - chr6_3:29982511-29982530 Msa0947360:CDS 50.0%
GTTGTCACATCGGAGGTTGT+TGG - chr6_3:29982518-29982537 Msa0947360:CDS 50.0%
ACCATCCGATCTCGATGCAA+CGG - chr6_3:29982620-29982639 Msa0947360:CDS 50.0%
GAATCAACAAGCTGCCGATG+AGG - chr6_3:29983295-29983314 Msa0947360:intron 50.0%
! GTCTCCGCTGAAGACGTTTT+TGG - chr6_3:29983364-29983383 Msa0947360:intron 50.0%
!! CGTACTGTTTGGTGCTTGCA+TGG - chr6_3:29983424-29983443 Msa0947360:intron 50.0%
GCTTGCATGGTCATAGGTGA+TGG - chr6_3:29983437-29983456 Msa0947360:intron 50.0%
GATACCGATGCCAGAACTGT+AGG + chr6_3:29984089-29984108 None:intergenic 50.0%
!! ACAGTTCTGGCATCGGTATC+AGG - chr6_3:29984089-29984108 Msa0947360:intron 50.0%
CCAGTATGAGACATGCTAGC+AGG + chr6_3:29984245-29984264 None:intergenic 50.0%
CCTGCTAGCATGTCTCATAC+TGG - chr6_3:29984242-29984261 Msa0947360:intron 50.0%
CTCTGTGTGTTCCGCAATGT+TGG + chr6_3:29984284-29984303 None:intergenic 50.0%
AGGGTTGGATTTCTCTCGGA+GGG - chr6_3:29984451-29984470 Msa0947360:CDS 50.0%
TATCTTACGTGGACCGCACA+TGG - chr6_3:29984521-29984540 Msa0947360:CDS 50.0%
TGAAAAGGTCCTGCCATGTG+CGG + chr6_3:29984537-29984556 None:intergenic 50.0%
AAGCAAAGGCAAGCTGCGTA+CGG + chr6_3:29984735-29984754 None:intergenic 50.0%
CTACCTTGGCCGCTATTGTT+GGG - chr6_3:29984989-29985008 Msa0947360:intron 50.0%
AGGTGTGTACGACTTTGACG+CGG + chr6_3:29985080-29985099 None:intergenic 50.0%
! TATAGGTTGGGGGCTAGTGT+TGG + chr6_3:29985599-29985618 None:intergenic 50.0%
TGATACGACGCCCTCTTGAT+GGG - chr6_3:29985633-29985652 Msa0947360:intron 50.0%
! CGAAGGCGTGTATCTATCAG+CGG - chr6_3:29986067-29986086 Msa0947360:intron 50.0%
! GCGTTCCTAAAAGTGCACCA+GGG - chr6_3:29986089-29986108 Msa0947360:intron 50.0%
! TTCCTAAAAGTGCACCAGGG+AGG - chr6_3:29986092-29986111 Msa0947360:intron 50.0%
! ATCCTCCCTGGTGCACTTTT+AGG + chr6_3:29986097-29986116 None:intergenic 50.0%
! TAAAAGTGCACCAGGGAGGA+TGG - chr6_3:29986096-29986115 Msa0947360:intron 50.0%
! AAAAGTGCACCAGGGAGGAT+GGG - chr6_3:29986097-29986116 Msa0947360:intron 50.0%
TAGGAATTGTCCGTGTCCCA+GGG - chr6_3:29986249-29986268 Msa0947360:intron 50.0%
GAGTAGATGAGTCCAATCCC+TGG + chr6_3:29986269-29986288 None:intergenic 50.0%
GATATGGTCGTGGACAAGCT+CGG + chr6_3:29986430-29986449 None:intergenic 50.0%
GTTTATCCAGATGGAGGCAG+TGG - chr6_3:29986541-29986560 Msa0947360:intron 50.0%
ACTCGACGCCTTCTTACTTG+CGG + chr6_3:29986755-29986774 None:intergenic 50.0%
ACTGCCTAACAACCCTGGAT+TGG - chr6_3:29986784-29986803 Msa0947360:intron 50.0%
TTAATCCAAGCCAAGGAGGC+TGG - chr6_3:29986836-29986855 Msa0947360:intron 50.0%
ATATGCAACTCCAGCCTCCT+TGG + chr6_3:29986849-29986868 None:intergenic 50.0%
GACACTCGTATGTGAAGGCA+AGG - chr6_3:29986876-29986895 Msa0947360:intron 50.0%
GGAATGTTGAGAGCTACAGC+TGG + chr6_3:29986974-29986993 None:intergenic 50.0%
AGGGTCGGTTGTACCTGAGA+AGG + chr6_3:29981607-29981626 None:intergenic 55.0%
GTTGGGAGGGACGTCGAATT+TGG - chr6_3:29982126-29982145 Msa0947360:CDS 55.0%
GAGGGGAGACCACACACTAA+AGG - chr6_3:29982363-29982382 Msa0947360:CDS 55.0%
GGGAGACCACACACTAAAGG+TGG - chr6_3:29982366-29982385 Msa0947360:CDS 55.0%
AGTGGCCGTTGCATCGAGAT+CGG + chr6_3:29982628-29982647 None:intergenic 55.0%
!! AGCGCCGATGATAACGGTGA+AGG - chr6_3:29983115-29983134 Msa0947360:intron 55.0%
GTACGACGACAGCTCCTCAT+CGG + chr6_3:29983312-29983331 None:intergenic 55.0%
TACGGTCCTTCATCGCAGAC+TGG - chr6_3:29983335-29983354 Msa0947360:intron 55.0%
AAACGTCTTCAGCGGAGACG+AGG + chr6_3:29983363-29983382 None:intergenic 55.0%
CAGGGTTGGATTTCTCTCGG+AGG - chr6_3:29984450-29984469 Msa0947360:CDS 55.0%
GCAAACATAGCTTCGGCTCC+TGG + chr6_3:29984603-29984622 None:intergenic 55.0%
GCTACCTTGGCCGCTATTGT+TGG - chr6_3:29984988-29985007 Msa0947360:intron 55.0%
ACTCCCAACAATAGCGGCCA+AGG + chr6_3:29984995-29985014 None:intergenic 55.0%
GTGTGTACGACTTTGACGCG+GGG + chr6_3:29985078-29985097 None:intergenic 55.0%
GGTGTGTACGACTTTGACGC+GGG + chr6_3:29985079-29985098 None:intergenic 55.0%
CTGATACGACGCCCTCTTGA+TGG - chr6_3:29985632-29985651 Msa0947360:intron 55.0%
! GGCGTTCCTAAAAGTGCACC+AGG - chr6_3:29986088-29986107 Msa0947360:intron 55.0%
CTAGGTTTGGGCCCTAGTCT+AGG - chr6_3:29986230-29986249 Msa0947360:intron 55.0%
CTAGGAATTGTCCGTGTCCC+AGG - chr6_3:29986248-29986267 Msa0947360:intron 55.0%
ATTGTCCGTGTCCCAGGGAT+TGG - chr6_3:29986254-29986273 Msa0947360:intron 55.0%
TGAGTCCAATCCCTGGGACA+CGG + chr6_3:29986262-29986281 None:intergenic 55.0%
TGCTCGGCCGAAATCAAGCT+TGG + chr6_3:29986647-29986666 None:intergenic 55.0%
AGTTGATTGCAAGCGGCGCA+GGG + chr6_3:29986717-29986736 None:intergenic 55.0%
! AAGTTGATTGCAAGCGGCGC+AGG + chr6_3:29986718-29986737 None:intergenic 55.0%
CTCGACGCCTTCTTACTTGC+GGG + chr6_3:29986754-29986773 None:intergenic 55.0%
GCCGTTGCATCGAGATCGGA+TGG + chr6_3:29982624-29982643 None:intergenic 60.0%
TTCGAGGGGAGACTCCGTGA+CGG - chr6_3:29982661-29982680 Msa0947360:CDS 60.0%
GAGGCTCCAGTCTGCGATGA+AGG + chr6_3:29983344-29983363 None:intergenic 60.0%
GCTAGCAGGACAAGTTCGCC+TGG + chr6_3:29984231-29984250 None:intergenic 60.0%
TTACGTGGACCGCACATGGC+AGG - chr6_3:29984525-29984544 Msa0947360:CDS 60.0%
CAAGAGGAACCCATCCTCCC+TGG + chr6_3:29986109-29986128 None:intergenic 60.0%
CAACTCCAGCCTCCTTGGCT+TGG + chr6_3:29986844-29986863 None:intergenic 60.0%
GCGGTTCCACTGCCTCCATC+TGG + chr6_3:29986550-29986569 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 29981514 29987272 29981514 ID=Msa0947360;Name=Msa0947360
chr6_3 mRNA 29981514 29987272 29981514 ID=Msa0947360-mRNA-1;Parent=Msa0947360;Name=Msa0947360-mRNA-1;_AED=0.09;_eAED=0.09;_QI=54|1|1|1|1|1|9|236|784
chr6_3 exon 29981514 29982837 29981514 ID=Msa0947360-mRNA-1:exon:7948;Parent=Msa0947360-mRNA-1
chr6_3 exon 29983573 29983827 29983573 ID=Msa0947360-mRNA-1:exon:7947;Parent=Msa0947360-mRNA-1
chr6_3 exon 29983930 29984044 29983930 ID=Msa0947360-mRNA-1:exon:7946;Parent=Msa0947360-mRNA-1
chr6_3 exon 29984130 29984182 29984130 ID=Msa0947360-mRNA-1:exon:7945;Parent=Msa0947360-mRNA-1
chr6_3 exon 29984294 29984554 29984294 ID=Msa0947360-mRNA-1:exon:7944;Parent=Msa0947360-mRNA-1
chr6_3 exon 29984643 29984693 29984643 ID=Msa0947360-mRNA-1:exon:7943;Parent=Msa0947360-mRNA-1
chr6_3 exon 29985304 29985549 29985304 ID=Msa0947360-mRNA-1:exon:7942;Parent=Msa0947360-mRNA-1
chr6_3 exon 29985650 29985890 29985650 ID=Msa0947360-mRNA-1:exon:7941;Parent=Msa0947360-mRNA-1
chr6_3 exon 29987174 29987272 29987174 ID=Msa0947360-mRNA-1:exon:7940;Parent=Msa0947360-mRNA-1
chr6_3 five_prime_UTR 29987219 29987272 29987219 ID=Msa0947360-mRNA-1:five_prime_utr;Parent=Msa0947360-mRNA-1
chr6_3 CDS 29987174 29987218 29987174 ID=Msa0947360-mRNA-1:cds;Parent=Msa0947360-mRNA-1
chr6_3 CDS 29985650 29985890 29985650 ID=Msa0947360-mRNA-1:cds;Parent=Msa0947360-mRNA-1
chr6_3 CDS 29985304 29985549 29985304 ID=Msa0947360-mRNA-1:cds;Parent=Msa0947360-mRNA-1
chr6_3 CDS 29984643 29984693 29984643 ID=Msa0947360-mRNA-1:cds;Parent=Msa0947360-mRNA-1
chr6_3 CDS 29984294 29984554 29984294 ID=Msa0947360-mRNA-1:cds;Parent=Msa0947360-mRNA-1
chr6_3 CDS 29984130 29984182 29984130 ID=Msa0947360-mRNA-1:cds;Parent=Msa0947360-mRNA-1
chr6_3 CDS 29983930 29984044 29983930 ID=Msa0947360-mRNA-1:cds;Parent=Msa0947360-mRNA-1
chr6_3 CDS 29983573 29983827 29983573 ID=Msa0947360-mRNA-1:cds;Parent=Msa0947360-mRNA-1
chr6_3 CDS 29981750 29982837 29981750 ID=Msa0947360-mRNA-1:cds;Parent=Msa0947360-mRNA-1
chr6_3 three_prime_UTR 29981514 29981749 29981514 ID=Msa0947360-mRNA-1:three_prime_utr;Parent=Msa0947360-mRNA-1
Gene Sequence

>Msa0947360

ATGGAACCAGAATCCATAGCTTCATCTTCTCGAAATCCTTCTCAGTTGTCATGGATTAACTTGTCTAGGAATTTACTGTTAGCATATCAAAGCTTCGGTGTTGTATATGGAGATCTAAGCACATCGCCGCTCTATGTTTATAAAAGTACATTTGAAGGAAAGTTGCAGAACCACCATGATGAAGAAACTATCTTTGGTGTTTTTTCGTTGATTTTCTGGACTCTTACATTAATACCGTTGCTTAAATATGTATTCATTCTATTGAGCGCCGATGATAACGGTGAAGGTGGAACATTTGCTCTTTATTCGCTGCTTTGCAGGCATGCCAAATTTAACTTGCTTCCGAATCAACAAGCTGCCGATGAGGAGCTGTCGTCGTACAAATACGGTCCTTCATCGCAGACTGGAGCCTCGTCTCCGCTGAAGACGTTTTTGGAGAAGCACAAACGGTCAAGAACAGTACTTCTTGTTGTCGTACTGTTTGGTGCTTGCATGGTCATAGGTGATGGTGTGCTTTCTCCAGCTATTTCAGTTCTGGCATCGGTATCAGGATTAAAAGTTACGGAATCAAAATTCAATAATGGCGAACTTGTCCTGCTAGCATGTCTCATACTGGTTGGCCTATTTGCTCTCCAACATTGCGGAACACACAGAGTTGCATTTATGTTTGCACCGATTGTAATCATCTGGCTTTTATCGATTTTTATTCTTGGGATCTATAATACGATACACTGGAATCCAAAAATAGTCTTTGCTATCTCCCCACATTATATCATCAAGTTCTTCATCAAGACTAGTACTCAGGGTTGGATTTCTCTCGGAGGGATACTTCTCTGTATCACCGGAGCCGAAGCTATGTTTGCAGATCTTGGTCATTTTACTGCTTCGTCAATAAGGCTTGCCTTTGCTTTTGTTATATACCCGTGTTTGGTTATGCAATACATGGGCCAAGCAGCTTTTTTGTCTAAAAATCTCGACTCTGTTCATAATAGTTTTTACGACTCAATACCTGGACCTGTATTTTGGCCTGTTTTTGTTATTGCTACCTTGGCCGCTATTGTTGGGAGTCAAGCTACTATCACTGCTACTTTCTCCATCATCAAGCAGTGTCATGCACTTGGTTGTTTTCCCCGCGTCAAAGTCGTACACACCTCGAAACACATATTTGGACAGATATACATTCCAGAAATTAACTGGATACTTATGGTCTTGACTCTTGCTGTAACAATCGGATTTCAGGACATAACCTTAATTGGAAATGCTTATGGACTTGCTTGTATGACGGTAATGTTCATAACCACATTTCTGATGGCACTAGTCATAATCTTTGTCTGGCAGAAAAGCATCCCGATTGCTACAATATTCCTTTTGTTCTTTTGGATTGTCGAAGGCGTGTATCTATCAGCGGCGTTCCTAAAAGTGCACCAGGGAGGATGGGTTCCTCTTGTCTTGTCCTTCTTCTTCTTGATTGTTATGTATGTGTGGCATTACGGTATTCGTAGGAAGTACAAATACGATCTACACAACAAAGTTTCATTGAAATGGTTACTAGGTTTGGGCCCTAGTCTAGGAATTGTCCGTGTCCCAGGGATTGGACTCATCTACTCGGAACTTGCAACTGGAATACCATCGATATTCACCCACTTCGTAACAAACCTTCCTGCATTTCACAAGGTGTTGGTCTTTGTTTGCGTAAAATCGGTTCCTGTACCATATGTCTCACCTGAAGAACGTTTTCTGATTGGCCGAGCTTGTCCACGACCATATCGAATGTATAGGTGCATTGTTAGATACGGGTACAAGGACATTAAAAGGGATGATGGAGAGTTTGAGAATCATCTCATACAAAGTATAATGGAGTTTATCCAGATGGAGGCAGTGGAACCGCAATTCTCGAGTTCTGAAGCTTCTTCATTTGATGGAAGGATGGCTGTTATAGGTACCAGAAGCTTCGAATCAACTCCAAGCTTGATTTCGGCCGAGCAAGAAGATGTTGATATCGACGAAAGCATCCCTAGTAGCAGATCTATAACCCTGCGCCGCTTGCAATCAACTTTTGACGATGAAAACCCGCAAGTAAGAAGGCGTCGAGTAAGGTTTCAACTGCCTAACAACCCTGGATTGGATCATGCTGTTAAAGAAGAGCTTTTAGATTTAATCCAAGCCAAGGAGGCTGGAGTTGCATATATAATGGGACACTCGTATGTGAAGGCAAGGAAATCATCGTCGTTCTTGAAAAAGCTTGTGATCGATATGGGATACTCGTTTCTGCGAAAGAATTGCAGGGGTCCAGCTGTAGCTCTCAACATTCCTCACATCAGTCTTATCGAAGTTGGAATGATATATTATGTCTAG
Protein sequence

>Msa0947360

MEPESIASSSRNPSQLSWINLSRNLLLAYQSFGVVYGDLSTSPLYVYKSTFEGKLQNHHDEETIFGVFSLIFWTLTLIPLLKYVFILLSADDNGEGGTFALYSLLCRHAKFNLLPNQQAADEELSSYKYGPSSQTGASSPLKTFLEKHKRSRTVLLVVVLFGACMVIGDGVLSPAISVLASVSGLKVTESKFNNGELVLLACLILVGLFALQHCGTHRVAFMFAPIVIIWLLSIFILGIYNTIHWNPKIVFAISPHYIIKFFIKTSTQGWISLGGILLCITGAEAMFADLGHFTASSIRLAFAFVIYPCLVMQYMGQAAFLSKNLDSVHNSFYDSIPGPVFWPVFVIATLAAIVGSQATITATFSIIKQCHALGCFPRVKVVHTSKHIFGQIYIPEINWILMVLTLAVTIGFQDITLIGNAYGLACMTVMFITTFLMALVIIFVWQKSIPIATIFLLFFWIVEGVYLSAAFLKVHQGGWVPLVLSFFFLIVMYVWHYGIRRKYKYDLHNKVSLKWLLGLGPSLGIVRVPGIGLIYSELATGIPSIFTHFVTNLPAFHKVLVFVCVKSVPVPYVSPEERFLIGRACPRPYRMYRCIVRYGYKDIKRDDGEFENHLIQSIMEFIQMEAVEPQFSSSEASSFDGRMAVIGTRSFESTPSLISAEQEDVDIDESIPSSRSITLRRLQSTFDDENPQVRRRRVRFQLPNNPGLDHAVKEELLDLIQAKEAGVAYIMGHSYVKARKSSSFLKKLVIDMGYSFLRKNCRGPAVALNIPHISLIEVGMIYYV*