AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0264580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0264580 MtrunA17_Chr2g0328761 98.028 507 10 0 1 507 1 507 0.0 995
Msa0264580 MtrunA17_Chr3g0088471 59.579 522 177 3 16 506 17 535 0.0 606
Msa0264580 MtrunA17_Chr8g0352151 55.515 544 188 5 12 506 13 551 0.0 565
Msa0264580 MtrunA17_Chr8g0352171 60.734 354 139 0 154 507 35 388 1.03e-152 441
Msa0264580 MtrunA17_Chr5g0448591 43.067 476 236 3 31 506 109 549 1.13e-126 380
Msa0264580 MtrunA17_Chr7g0243421 44.195 267 149 0 239 505 4 270 5.73e-71 227
Msa0264580 MtrunA17_Chr7g0243411 45.498 211 81 2 29 236 110 289 9.85e-40 146
Msa0264580 MtrunA17_Chr4g0035751 25.738 474 283 14 36 495 95 513 4.74e-20 93.2
Msa0264580 MtrunA17_Chr4g0035741 25.417 480 288 15 36 500 108 532 3.25e-19 90.9
Msa0264580 MtrunA17_Chr4g0035791 24.211 475 300 11 36 500 106 530 1.35e-18 89.0
Msa0264580 MtrunA17_Chr8g0352161 72.549 51 14 0 66 116 3 53 1.00e-16 76.6
Msa0264580 MtrunA17_Chr4g0035811 24.632 475 298 13 36 500 134 558 2.01e-16 82.0
Msa0264580 MtrunA17_Chr4g0035761 24.528 477 296 15 36 500 109 533 3.79e-14 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0264580 AT1G51340.3 70.356 506 140 4 12 507 10 515 0.0 669
Msa0264580 AT1G51340.5 70.356 506 140 4 12 507 10 515 0.0 669
Msa0264580 AT1G51340.2 70.356 506 140 4 12 507 10 515 0.0 669
Msa0264580 AT1G51340.1 71.224 490 131 4 28 507 20 509 0.0 659
Msa0264580 AT3G08040.1 59.881 506 186 3 16 506 15 518 0.0 560
Msa0264580 AT1G51340.4 69.291 381 107 4 12 382 10 390 4.12e-168 481
Msa0264580 AT3G08040.2 59.158 404 154 2 103 506 22 414 1.10e-163 470
Msa0264580 AT4G38380.3 44.421 475 240 3 33 507 32 482 1.83e-127 380
Msa0264580 AT4G38380.2 44.421 475 240 3 33 507 104 554 3.20e-126 380
Msa0264580 AT4G38380.1 44.421 475 240 3 33 507 104 554 3.20e-126 380
Msa0264580 AT4G38380.4 44.540 467 235 3 41 507 2 444 4.64e-125 373
Msa0264580 AT4G38380.5 44.000 475 232 3 33 507 104 544 1.11e-124 375
Msa0264580 AT2G38330.1 44.654 477 230 2 31 507 73 515 2.87e-123 371
Msa0264580 AT2G21340.1 25.652 460 273 16 36 480 117 522 8.32e-17 83.6
Msa0264580 AT2G21340.2 25.217 460 272 16 36 480 117 519 1.11e-15 80.1
Msa0264580 AT4G39030.1 24.788 472 289 16 36 494 100 518 1.27e-15 80.1

Find 155 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAATCAGAAACGTCTTTA+AGG 0.166196 2_2:+64494319 None:intergenic
CTGGTGGATTCATTGGAATT+TGG 0.174098 2_2:-64490384 Msa0264580:CDS
GCTTCGTCAGCGCTATATTT+TGG 0.205113 2_2:-64492583 Msa0264580:CDS
ACATAATCATAGCTTATATT+TGG 0.219856 2_2:-64490124 Msa0264580:three_prime_UTR
ACTCATAATGACATGAAATA+TGG 0.232021 2_2:-64489910 Msa0264580:three_prime_UTR
ACGGCCTTCATTGGCCAATT+AGG 0.238684 2_2:-64493338 Msa0264580:intron
ATGCAGATGGGCATGGTTCT+TGG 0.278565 2_2:-64491109 Msa0264580:intron
TTCAAGTCTGTCTGCAAGTT+TGG 0.279500 2_2:-64491454 Msa0264580:CDS
GCGGATGGTCTGGCTGTTGC+CGG 0.285261 2_2:-64491413 Msa0264580:CDS
TATTTGATGGTGTCAACTTT+GGG 0.292922 2_2:-64490848 Msa0264580:CDS
TGGTTTCAGGCGATTCTTGC+AGG 0.293939 2_2:-64491310 Msa0264580:intron
TTGGCACTTGCATTCATTCT+TGG 0.305585 2_2:-64491085 Msa0264580:CDS
CTAAGACTATAGTGGAAATT+AGG 0.308006 2_2:-64494413 None:intergenic
AACATGATAACATACCTAAT+TGG 0.313690 2_2:+64493324 None:intergenic
AATTTCAAGTACTGCATTGC+AGG 0.318886 2_2:+64492317 None:intergenic
TGGTGGATTCATTGGAATTT+GGG 0.325300 2_2:-64490383 Msa0264580:CDS
AAGTTTATATGAAAATAAAT+TGG 0.326586 2_2:+64489750 None:intergenic
GGACTTGTTTGAGACGAAAA+AGG 0.328496 2_2:+64494365 None:intergenic
AGAAAGGAATAACATGAAAA+AGG 0.329832 2_2:+64494249 None:intergenic
AAAATTACATAAACAACAAC+TGG 0.330624 2_2:-64489786 Msa0264580:three_prime_UTR
TGTTTGGCCTTTGTATTTGA+TGG 0.334770 2_2:-64490861 Msa0264580:CDS
AAAACCTTTATTGAACTTCA+TGG 0.337472 2_2:-64492515 Msa0264580:CDS
ATACAAAGGCCAAACAGTTC+AGG 0.350521 2_2:+64490868 None:intergenic
AACTCTTTGGTTTCAGCATC+CGG 0.351723 2_2:+64492790 None:intergenic
ACCTATTTGCACTTTCTTCA+AGG 0.352355 2_2:-64493701 Msa0264580:CDS
TGAAAGCTTTAATGTAGTTA+AGG 0.364155 2_2:-64492638 Msa0264580:CDS
AACTGCTACCCGAGTATTGC+AGG 0.367216 2_2:-64491251 Msa0264580:intron
CATGAAATATGGGATCAAAA+AGG 0.368550 2_2:-64489899 Msa0264580:three_prime_UTR
TCATCTGCTGGTGGATTCAT+TGG 0.373915 2_2:-64490391 Msa0264580:CDS
TTTCACCTAAAACAGTGAAT+TGG 0.378901 2_2:-64493781 Msa0264580:intron
GCCCGCTGCAATGGCTTTGA+CGG 0.379476 2_2:-64493387 Msa0264580:CDS
CTTGCATTCATTCTTGGAAC+AGG 0.384448 2_2:-64491079 Msa0264580:CDS
TTATGATGCAGGATTGGAAC+TGG 0.389829 2_2:-64490202 Msa0264580:intron
TTTAATGTAGTTAAGGTTGA+TGG 0.390926 2_2:-64492631 Msa0264580:CDS
ACTCCCATGAAGTTCAATAA+AGG 0.391036 2_2:+64492511 None:intergenic
GTATTTAAATTAGACGATCT+TGG 0.391627 2_2:-64493434 Msa0264580:CDS
TACATACCAGTGGCATATAA+AGG 0.392262 2_2:+64492215 None:intergenic
CAGAAATAAGCAACGTTGCC+TGG 0.395145 2_2:+64492542 None:intergenic
GTCCCTTCTTGCGGATGGTC+TGG 0.395512 2_2:-64491423 Msa0264580:CDS
TCTTCTTTCATTAGCGATGC+AGG 0.402072 2_2:-64492270 Msa0264580:CDS
TGGTCTGGCTGTTGCCGGGC+AGG 0.402764 2_2:-64491408 Msa0264580:intron
AGGACTCAACTGAAATTAAC+AGG 0.404733 2_2:+64494194 None:intergenic
CTGTGAGCTTGCGTCGCTTA+AGG 0.406638 2_2:+64492849 None:intergenic
TCCTACACCTCATTAGAGTT+GGG 0.408785 2_2:-64491015 Msa0264580:CDS
TCTTCATTCTCAGGTTATAG+TGG 0.409610 2_2:-64490446 Msa0264580:intron
GTATTTGATGGTGTCAACTT+TGG 0.411044 2_2:-64490849 Msa0264580:CDS
AGAAATCATTTGAAAAGAAT+AGG 0.418081 2_2:-64490037 Msa0264580:three_prime_UTR
CACTCAACCCCTGAACTGTT+TGG 0.424826 2_2:-64490877 Msa0264580:CDS
CTCATAATGACATGAAATAT+GGG 0.425245 2_2:-64489909 Msa0264580:three_prime_UTR
ATGAGTTTAAGAGCCTTTGC+TGG 0.427946 2_2:-64490343 Msa0264580:CDS
TTGGTCGATACGGCCTTCAT+TGG 0.428017 2_2:-64493347 Msa0264580:CDS
TTGTGGTTCACATTAGTAAA+GGG 0.428110 2_2:-64490090 Msa0264580:three_prime_UTR
TTTCTGCGGTAAGAACTCTT+TGG 0.430202 2_2:+64492777 None:intergenic
AATTGCTTTGCCCGCTGCAA+TGG 0.438261 2_2:-64493396 Msa0264580:CDS
CGACGCAAGCTCACAGGTAG+AGG 0.442007 2_2:-64492842 Msa0264580:CDS
GCCGTCAAAGCCATTGCAGC+GGG 0.444777 2_2:+64493386 None:intergenic
GCCCCACATTAACATATTTG+TGG 0.450475 2_2:-64494391 Msa0264580:five_prime_UTR
CTTGGAACAGGATTGCACTT+TGG 0.450496 2_2:-64491067 Msa0264580:CDS
TACTTGAAATTGAGATCTCT+TGG 0.450593 2_2:-64492305 Msa0264580:CDS
TGCAGGATTGGAACTGGGTC+AGG 0.452693 2_2:-64490196 Msa0264580:intron
GGCTGATCCTATAGCATCAT+TGG 0.454668 2_2:-64493366 Msa0264580:CDS
CAGGACCATGGGAATTCCTT+AGG 0.460543 2_2:-64490177 Msa0264580:CDS
AGGAGCTAAGTGCGCTAGCC+TGG 0.461068 2_2:-64490157 Msa0264580:exon
CTTGGAAGCTGCGACACCTC+CGG 0.465998 2_2:-64492809 Msa0264580:CDS
TCCTTGAAGAAAGTGCAAAT+AGG 0.466690 2_2:+64493700 None:intergenic
AATTGCAGATGTTTGATGCT+TGG 0.468820 2_2:+64491817 None:intergenic
ATTGTGGTTCACATTAGTAA+AGG 0.475969 2_2:-64490091 Msa0264580:three_prime_UTR
TGCAGGTGCATTTGCTAACA+AGG 0.477862 2_2:-64491293 Msa0264580:CDS
TACAAAGGCCAAACAGTTCA+GGG 0.478905 2_2:+64490869 None:intergenic
CGGATGGTCTGGCTGTTGCC+GGG 0.479805 2_2:-64491412 Msa0264580:CDS
AAACCTTTATTGAACTTCAT+GGG 0.481789 2_2:-64492514 Msa0264580:CDS
GTGATATCTTGTTGAGGCAT+CGG 0.482444 2_2:-64489995 Msa0264580:three_prime_UTR
GATGGGCATGGTTCTTGGAT+TGG 0.483353 2_2:-64491104 Msa0264580:CDS
GCACTTTCTTCAAGGATGCT+AGG 0.484597 2_2:-64493693 Msa0264580:intron
TGGAACTGGGTCAGGACCAT+GGG 0.486703 2_2:-64490188 Msa0264580:CDS
CCTACTGCAGCAAGCTCCAC+TGG 0.487433 2_2:+64492961 None:intergenic
GTATCGACCAATGATGCTAT+AGG 0.489373 2_2:+64493359 None:intergenic
ATTTGGCCACAGTTTGATTG+TGG 0.495286 2_2:-64490107 Msa0264580:three_prime_UTR
GTCCTACACCTCATTAGAGT+TGG 0.498396 2_2:-64491016 Msa0264580:CDS
TGCTAACAAGGACTATGAAA+AGG 0.500938 2_2:-64491281 Msa0264580:CDS
GCAGTGTCCCTTCTTGCGGA+TGG 0.503081 2_2:-64491428 Msa0264580:CDS
CTTGTTTGTTCAAACTCCAC+AGG 0.509281 2_2:+64491854 None:intergenic
GCTAGCGCACTTAGCTCCTA+AGG 0.510397 2_2:+64490161 None:intergenic
CATACCTAATTGGCCAATGA+AGG 0.513148 2_2:+64493334 None:intergenic
AGTCTGTCTGCAAGTTTGGT+TGG 0.514353 2_2:-64491450 Msa0264580:CDS
GTAGCAGTCTAAGACTATAG+TGG 0.519360 2_2:-64494421 None:intergenic
CCTCATTAGAGTTGGGGTCC+CGG 0.519902 2_2:-64491008 Msa0264580:intron
CCAGTGGAGCTTGCTGCAGT+AGG 0.523504 2_2:-64492961 Msa0264580:CDS
GATTATGTATTGATGTTGCC+AGG 0.524125 2_2:+64490139 None:intergenic
AGCTCACAGGTAGAGGAGAA+TGG 0.528973 2_2:-64492835 Msa0264580:CDS
GTCCACAAATATGTTAATGT+GGG 0.533008 2_2:+64494389 None:intergenic
TGTAGAACACCTGCAATACT+CGG 0.533112 2_2:+64491242 None:intergenic
CTTAAGCGACGCAAGCTCAC+AGG 0.533775 2_2:-64492848 Msa0264580:CDS
CTTCTTTCATTAGCGATGCA+GGG 0.537717 2_2:-64492269 Msa0264580:CDS
TGCAGATGTTTGATGCTTGG+AGG 0.538167 2_2:+64491820 None:intergenic
TTGGAACTGGGTCAGGACCA+TGG 0.539529 2_2:-64490189 Msa0264580:CDS
CAGCCAGACCATCCGCAAGA+AGG 0.542007 2_2:+64491420 None:intergenic
TGTCCACAAATATGTTAATG+TGG 0.542132 2_2:+64494388 None:intergenic
TCTGCAATCTGAAAGAAGAA+AGG 0.543648 2_2:+64494233 None:intergenic
GGTAGAGGAGAATGGATGCT+TGG 0.544369 2_2:-64492827 Msa0264580:CDS
TATAGCATCATTGGTCGATA+CGG 0.544448 2_2:-64493357 Msa0264580:CDS
GAGCCTTTGCTGGCTTCTTG+AGG 0.546982 2_2:-64490333 Msa0264580:intron
AAAACTCCTTTATATGCCAC+TGG 0.548051 2_2:-64492221 Msa0264580:intron
ACGTTGCCTGGACGAGGCCA+AGG 0.550365 2_2:+64492554 None:intergenic
AGGTATCCTTGGCCTCGTCC+AGG 0.551223 2_2:-64492560 Msa0264580:CDS
GTATTCCGCATGGGTGTCAA+CGG 0.551236 2_2:-64492075 Msa0264580:CDS
CTCTATTCAATCAAGCATCA+AGG 0.567403 2_2:-64492927 Msa0264580:CDS
TGCTTGATTGAATAGAGCTA+TGG 0.567545 2_2:+64492933 None:intergenic
GGTAACATTCTGCGTGACAC+TGG 0.567656 2_2:-64491522 Msa0264580:CDS
GTTGGCAGTGTCCCTTCTTG+CGG 0.568099 2_2:-64491432 Msa0264580:CDS
GAGATCTCTTGGTGCTCCTG+CGG 0.568151 2_2:-64492294 Msa0264580:CDS
TGCATATTCAGCCTTCTCCA+TGG 0.574962 2_2:-64490814 Msa0264580:intron
TAATATAATGCAGATGGGCA+TGG 0.575585 2_2:-64491116 Msa0264580:intron
GCAACAAAACAAAACAACAT+TGG 0.576245 2_2:+64494344 None:intergenic
AGCCAGACCATCCGCAAGAA+GGG 0.579779 2_2:+64491421 None:intergenic
TATTAGATAGATACACTTGG+AGG 0.580107 2_2:+64489932 None:intergenic
GTGAATTGGCACTTCAGAGA+TGG 0.580452 2_2:-64493767 Msa0264580:exon
TAAGCAACGTTGCCTGGACG+AGG 0.584099 2_2:+64492548 None:intergenic
CATTTGAAAAGAATAGGCAT+TGG 0.586165 2_2:-64490031 Msa0264580:three_prime_UTR
CATATCATATCTCACCTGCC+CGG 0.595074 2_2:+64491394 None:intergenic
GAAGTTACATACCATGGAGA+AGG 0.599442 2_2:+64490803 None:intergenic
ACAGACTTGAAATGCAGCCA+TGG 0.602463 2_2:+64491466 None:intergenic
ATTTGATGGTGTCAACTTTG+GGG 0.602557 2_2:-64490847 Msa0264580:CDS
CCGGGACCCCAACTCTAATG+AGG 0.604305 2_2:+64491008 None:intergenic
TACTTTCAGCTATACTCCTG+TGG 0.608095 2_2:-64491870 Msa0264580:CDS
TACTCGGGTAGCAGTTGTTG+AGG 0.609106 2_2:+64491258 None:intergenic
TGCATTGCAGGATGTAGCAT+AGG 0.609472 2_2:+64492329 None:intergenic
GAAGTTGTGACACTGACTAG+TGG 0.610876 2_2:+64492892 None:intergenic
GCTAATGAAAGAAGAACCGC+AGG 0.618157 2_2:+64492278 None:intergenic
ATTGGTCTCTACAGGTCCAG+TGG 0.619428 2_2:-64492977 Msa0264580:intron
GTAGAACACCTGCAATACTC+GGG 0.620615 2_2:+64491243 None:intergenic
CTATACATCTTCTAAAGCTG+AGG 0.626582 2_2:+64489961 None:intergenic
AAGTTGTGACACTGACTAGT+GGG 0.626798 2_2:+64492893 None:intergenic
CCCCAACTCTAATGAGGTGT+AGG 0.629440 2_2:+64491014 None:intergenic
AGCCGTCAAAGCCATTGCAG+CGG 0.630911 2_2:+64493385 None:intergenic
ATTATTCATGAGAGTCATTG+CGG 0.631200 2_2:-64491543 Msa0264580:CDS
TATGATGCAGGATTGGAACT+GGG 0.631342 2_2:-64490201 Msa0264580:intron
AGGTTGATGGAAGTAAGAGA+AGG 0.632842 2_2:-64492618 Msa0264580:CDS
ACACCACGGATCAACATCCA+TGG 0.637699 2_2:-64491483 Msa0264580:CDS
TTACCTCAAGAAGCCAGCAA+AGG 0.639714 2_2:+64490330 None:intergenic
CTGAGATATAACATGTGCAA+TGG 0.641731 2_2:+64492047 None:intergenic
CCTACACCTCATTAGAGTTG+GGG 0.644035 2_2:-64491014 Msa0264580:CDS
GTTGACACCATCAAATACAA+AGG 0.646571 2_2:+64490854 None:intergenic
TCCACAAATATGTTAATGTG+GGG 0.651252 2_2:+64494390 None:intergenic
GAGTATTAGATAGATACACT+TGG 0.652013 2_2:+64489929 None:intergenic
TATAGCGCTGACGAAGCTGA+AGG 0.652574 2_2:+64492589 None:intergenic
AAATTACATAAACAACAACT+GGG 0.667467 2_2:-64489785 Msa0264580:three_prime_UTR
TCTTTGGTTTCAGCATCCGG+AGG 0.669170 2_2:+64492793 None:intergenic
TAGCTCCTAAGGAATTCCCA+TGG 0.675106 2_2:+64490172 None:intergenic
ATGATTGTGATATCTTGTTG+AGG 0.693625 2_2:-64490001 Msa0264580:three_prime_UTR
ACAAAGGCCAAACAGTTCAG+GGG 0.700393 2_2:+64490870 None:intergenic
TGTGAACCACAATCAAACTG+TGG 0.714063 2_2:+64490101 None:intergenic
GCATCATTAGCTGCACACCA+CGG 0.714665 2_2:-64491497 Msa0264580:CDS
CAGCCATGGATGTTGATCCG+TGG 0.715332 2_2:+64491480 None:intergenic
CTGCACCGTTGACACCCATG+CGG 0.715966 2_2:+64492070 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATATATCATAATTTAG+AGG + chr2_2:64490255-64490274 None:intergenic 10.0%
!! AAGTTTATATGAAAATAAAT+TGG + chr2_2:64494406-64494425 None:intergenic 10.0%
!!! ATTTATTTTCATATAAACTT+TGG - chr2_2:64494406-64494425 Msa0264580:five_prime_UTR 10.0%
!! AAAAAATTGAATATGTATCA+AGG + chr2_2:64490183-64490202 None:intergenic 15.0%
!!! ACATATTCAATTTTTTTTGT+TGG - chr2_2:64490187-64490206 Msa0264580:CDS 15.0%
!! AAAAATTAGAAGAAACAAAA+AGG + chr2_2:64490302-64490321 None:intergenic 15.0%
!!! TAGTTAGCAATTATATTTTT+AGG - chr2_2:64490565-64490584 Msa0264580:intron 15.0%
!! AAAAATGAACTAAAAATATG+AGG + chr2_2:64490613-64490632 None:intergenic 15.0%
!! AAAATATGAATAGAACTATA+GGG - chr2_2:64491040-64491059 Msa0264580:CDS 15.0%
!!! ACTTAATTACATTGATTATT+TGG + chr2_2:64491108-64491127 None:intergenic 15.0%
!! TATAGTTTAATACAGATTTA+AGG - chr2_2:64492163-64492182 Msa0264580:intron 15.0%
!! GTATAAACTTTAAATAACAT+TGG + chr2_2:64492478-64492497 None:intergenic 15.0%
!! TTAAAGTTTATACACAAATT+TGG - chr2_2:64492485-64492504 Msa0264580:intron 15.0%
!! TAATTATAATATAATGCAGA+TGG - chr2_2:64493031-64493050 Msa0264580:intron 15.0%
!! AATTATAATATAATGCAGAT+GGG - chr2_2:64493032-64493051 Msa0264580:intron 15.0%
!!! AAATTTCTCCTTATTTTTTT+AGG - chr2_2:64494088-64494107 Msa0264580:intron 15.0%
!!! TTTATGTAATTTTGTCTTTT+GGG + chr2_2:64494360-64494379 None:intergenic 15.0%
!! AATATCACATTGATAAACAT+TGG - chr2_2:64490272-64490291 Msa0264580:intron 20.0%
!! AATAATTGAAAAAATTGTGG+AGG + chr2_2:64490508-64490527 None:intergenic 20.0%
!! CACAATAATTGAAAAAATTG+TGG + chr2_2:64490511-64490530 None:intergenic 20.0%
!! AAAATATAATTGCTAACTAG+AGG + chr2_2:64490564-64490583 None:intergenic 20.0%
!! GAAAATATGAATAGAACTAT+AGG - chr2_2:64491039-64491058 Msa0264580:CDS 20.0%
!! ACGATGATTGAAAAATAATA+TGG - chr2_2:64491782-64491801 Msa0264580:intron 20.0%
!!! ATAATATGGATTATTTGTAC+AGG - chr2_2:64491796-64491815 Msa0264580:intron 20.0%
!! GTTTATAGTCCTTATTAAAA+AGG + chr2_2:64492959-64492978 None:intergenic 20.0%
!! ACATAATCATAGCTTATATT+TGG - chr2_2:64494029-64494048 Msa0264580:intron 20.0%
!! AGAAATCATTTGAAAAGAAT+AGG - chr2_2:64494116-64494135 Msa0264580:intron 20.0%
!!! TGAAAACAATTTTACATGTA+CGG - chr2_2:64494297-64494316 Msa0264580:five_prime_UTR 20.0%
!!! GTTTATGTAATTTTGTCTTT+TGG + chr2_2:64494361-64494380 None:intergenic 20.0%
!! AAAATTACATAAACAACAAC+TGG - chr2_2:64494367-64494386 Msa0264580:five_prime_UTR 20.0%
!! AAATTACATAAACAACAACT+GGG - chr2_2:64494368-64494387 Msa0264580:five_prime_UTR 20.0%
! TATAATCAGAAACGTCTTTA+AGG + chr2_2:64489837-64489856 None:intergenic 25.0%
! AGAAAGGAATAACATGAAAA+AGG + chr2_2:64489907-64489926 None:intergenic 25.0%
! TGAAAAATAACACTATCTCA+AGG + chr2_2:64490022-64490041 None:intergenic 25.0%
!! ACCTTTTCTTTTCATTATGA+TGG - chr2_2:64490052-64490071 Msa0264580:three_prime_UTR 25.0%
! ACCATCATAATGAAAAGAAA+AGG + chr2_2:64490056-64490075 None:intergenic 25.0%
! AATTAGAAGAAACAAAAAGG+TGG + chr2_2:64490299-64490318 None:intergenic 25.0%
!!! AAAGAGAGTTTGTTTTCTAT+AGG - chr2_2:64490414-64490433 Msa0264580:CDS 25.0%
! TTTCATAATTCCATGTACTT+AGG - chr2_2:64490663-64490682 Msa0264580:intron 25.0%
! GTATTTAAATTAGACGATCT+TGG - chr2_2:64490719-64490738 Msa0264580:intron 25.0%
! AACATGATAACATACCTAAT+TGG + chr2_2:64490832-64490851 None:intergenic 25.0%
!! TAGTAATCAGGAAATTTTCT+TGG + chr2_2:64491459-64491478 None:intergenic 25.0%
!! TGAAAGCTTTAATGTAGTTA+AGG - chr2_2:64491515-64491534 Msa0264580:CDS 25.0%
! TTTAATGTAGTTAAGGTTGA+TGG - chr2_2:64491522-64491541 Msa0264580:CDS 25.0%
! AAAACCTTTATTGAACTTCA+TGG - chr2_2:64491638-64491657 Msa0264580:intron 25.0%
! AAACCTTTATTGAACTTCAT+GGG - chr2_2:64491639-64491658 Msa0264580:intron 25.0%
!! ATATCTCAGTATGTTTTACT+TGG - chr2_2:64492120-64492139 Msa0264580:CDS 25.0%
! CAAAATCAAATAGAAGCAAA+AGG + chr2_2:64492224-64492243 None:intergenic 25.0%
! TTCAAATTAACTGTAAATGC+AGG - chr2_2:64492256-64492275 Msa0264580:CDS 25.0%
!! TTATAAACCCTTACCATTTT+TGG + chr2_2:64492373-64492392 None:intergenic 25.0%
! AATCCTTATTATCTACGAAA+TGG - chr2_2:64492391-64492410 Msa0264580:intron 25.0%
! AAACCATTTCGTAGATAATA+AGG + chr2_2:64492397-64492416 None:intergenic 25.0%
!!! AAACCAAGATGATGTTTTTT+CGG + chr2_2:64492829-64492848 None:intergenic 25.0%
! AATTTATTCGTGTTCAGATT+TGG - chr2_2:64493169-64493188 Msa0264580:intron 25.0%
! AATGAAAGTTCTACTCTTTA+GGG + chr2_2:64493225-64493244 None:intergenic 25.0%
! ATTAAAATATAGACTCTCCA+TGG + chr2_2:64493419-64493438 None:intergenic 25.0%
! TTTCAATGATTCTTCAAGAT+TGG + chr2_2:64493447-64493466 None:intergenic 25.0%
!!! AGAATATGAAAGAAAGCATT+AGG + chr2_2:64493871-64493890 None:intergenic 25.0%
! TCTCAAGACCTAAAAAAATA+AGG + chr2_2:64494099-64494118 None:intergenic 25.0%
! ACTCATAATGACATGAAATA+TGG - chr2_2:64494243-64494262 Msa0264580:five_prime_UTR 25.0%
! CTCATAATGACATGAAATAT+GGG - chr2_2:64494244-64494263 Msa0264580:five_prime_UTR 25.0%
!! ACGGATTTCTTTTCTTTTTT+TGG - chr2_2:64494316-64494335 Msa0264580:five_prime_UTR 25.0%
!! CGGATTTCTTTTCTTTTTTT+GGG - chr2_2:64494317-64494336 Msa0264580:five_prime_UTR 25.0%
TCCACAAATATGTTAATGTG+GGG + chr2_2:64489766-64489785 None:intergenic 30.0%
GTCCACAAATATGTTAATGT+GGG + chr2_2:64489767-64489786 None:intergenic 30.0%
TGTCCACAAATATGTTAATG+TGG + chr2_2:64489768-64489787 None:intergenic 30.0%
GCAACAAAACAAAACAACAT+TGG + chr2_2:64489812-64489831 None:intergenic 30.0%
AACTCTAGCTATGAAATCAA+TGG + chr2_2:64489986-64490005 None:intergenic 30.0%
TTGATTTCATAGCTAGAGTT+TGG - chr2_2:64489986-64490005 Msa0264580:three_prime_UTR 30.0%
!!! TTGTTTTTTCTTTGAGTGAG+AGG - chr2_2:64490087-64490106 Msa0264580:three_prime_UTR 30.0%
!!! TGTTTTTTCTTTGAGTGAGA+GGG - chr2_2:64490088-64490107 Msa0264580:three_prime_UTR 30.0%
GTCAGTATTTAACCACATAA+TGG - chr2_2:64490209-64490228 Msa0264580:intron 30.0%
CACATATATTCTCCATTATG+TGG + chr2_2:64490224-64490243 None:intergenic 30.0%
TTTCACCTAAAACAGTGAAT+TGG - chr2_2:64490372-64490391 Msa0264580:CDS 30.0%
!! GTTTGTTTTCTATAGGTGAT+TGG - chr2_2:64490421-64490440 Msa0264580:CDS 30.0%
GAAAAAATTGTGGAGGAAAT+AGG + chr2_2:64490501-64490520 None:intergenic 30.0%
AAGAGTTAAACCTAAGTACA+TGG + chr2_2:64490676-64490695 None:intergenic 30.0%
TCTTGCTCTACTAATTTGAA+CGG + chr2_2:64490934-64490953 None:intergenic 30.0%
!! CATCAAGTGTTGGATATTAT+TGG - chr2_2:64491158-64491177 Msa0264580:intron 30.0%
ACATTCGTATGTTAGTAATC+AGG + chr2_2:64491471-64491490 None:intergenic 30.0%
ACATTACGAGACTTACTTAT+AGG - chr2_2:64491690-64491709 Msa0264580:intron 30.0%
TACTTGAAATTGAGATCTCT+TGG - chr2_2:64491848-64491867 Msa0264580:CDS 30.0%
CGGAATACAAAAATGAAAAG+CGG + chr2_2:64492066-64492085 None:intergenic 30.0%
!! TTTCATTTTTGTATTCCGCA+TGG - chr2_2:64492068-64492087 Msa0264580:CDS 30.0%
!! TTCATTTTTGTATTCCGCAT+GGG - chr2_2:64492069-64492088 Msa0264580:CDS 30.0%
AGGAAATTAAGAGACAAGAT+AGG + chr2_2:64492204-64492223 None:intergenic 30.0%
! TTCAGCAGAGATATATTTTC+TGG - chr2_2:64492430-64492449 Msa0264580:intron 30.0%
! TCAGCAGAGATATATTTTCT+GGG - chr2_2:64492431-64492450 Msa0264580:intron 30.0%
!! ATTACCGATTTGAACGTAAA+AGG + chr2_2:64492544-64492563 None:intergenic 30.0%
ATGACAATAATGAAATGGGA+AGG + chr2_2:64492579-64492598 None:intergenic 30.0%
CTGCATGACAATAATGAAAT+GGG + chr2_2:64492583-64492602 None:intergenic 30.0%
ATTATTCATGAGAGTCATTG+CGG - chr2_2:64492610-64492629 Msa0264580:CDS 30.0%
GATATGATTCATTACTCTCT+CGG - chr2_2:64492776-64492795 Msa0264580:CDS 30.0%
AAAAACATCATCTTGGTTTC+AGG - chr2_2:64492830-64492849 Msa0264580:CDS 30.0%
!!! CATTATTTTAAGAAGATCGC+TGG - chr2_2:64492932-64492951 Msa0264580:CDS 30.0%
TCTGAACACGAATAAATTAC+CGG + chr2_2:64493167-64493186 None:intergenic 30.0%
GAATGAAAGTTCTACTCTTT+AGG + chr2_2:64493226-64493245 None:intergenic 30.0%
!! TATTTGATGGTGTCAACTTT+GGG - chr2_2:64493305-64493324 Msa0264580:intron 30.0%
GATCAAAGCAGATTAAAACA+TGG + chr2_2:64493378-64493397 None:intergenic 30.0%
AAAACATTGTAGCAAGAGTT+TGG + chr2_2:64493626-64493645 None:intergenic 30.0%
TCAATGAACTATTATGATGC+AGG - chr2_2:64493940-64493959 Msa0264580:intron 30.0%
ATTGTGGTTCACATTAGTAA+AGG - chr2_2:64494062-64494081 Msa0264580:intron 30.0%
TTGTGGTTCACATTAGTAAA+GGG - chr2_2:64494063-64494082 Msa0264580:intron 30.0%
CATTTGAAAAGAATAGGCAT+TGG - chr2_2:64494122-64494141 Msa0264580:intron 30.0%
ATGATTGTGATATCTTGTTG+AGG - chr2_2:64494152-64494171 Msa0264580:intron 30.0%
TATTAGATAGATACACTTGG+AGG + chr2_2:64494224-64494243 None:intergenic 30.0%
GAGTATTAGATAGATACACT+TGG + chr2_2:64494227-64494246 None:intergenic 30.0%
CATGAAATATGGGATCAAAA+AGG - chr2_2:64494254-64494273 Msa0264580:five_prime_UTR 30.0%
TCTGCAATCTGAAAGAAGAA+AGG + chr2_2:64489923-64489942 None:intergenic 35.0%
AGGACTCAACTGAAATTAAC+AGG + chr2_2:64489962-64489981 None:intergenic 35.0%
CTAGCTATGAAATCAATGGA+AGG + chr2_2:64489982-64490001 None:intergenic 35.0%
CATCAACTTAACAACAGTGA+TGG + chr2_2:64490154-64490173 None:intergenic 35.0%
! AAGTGCCAATTCACTGTTTT+AGG + chr2_2:64490380-64490399 None:intergenic 35.0%
ACCTATTTGCACTTTCTTCA+AGG - chr2_2:64490452-64490471 Msa0264580:intron 35.0%
! TCCTTGAAGAAAGTGCAAAT+AGG + chr2_2:64490456-64490475 None:intergenic 35.0%
! AATACTAGTCTGCAGTAAGA+AGG + chr2_2:64490704-64490723 None:intergenic 35.0%
TATAGCATCATTGGTCGATA+CGG - chr2_2:64490796-64490815 Msa0264580:intron 35.0%
!!! GCTATGTCTATCGACTTTTT+TGG + chr2_2:64490912-64490931 None:intergenic 35.0%
TGTTGATCCAACTCGAAAAA+TGG - chr2_2:64491071-64491090 Msa0264580:CDS 35.0%
!!! CTTCTATCCATTTTTCGAGT+TGG + chr2_2:64491081-64491100 None:intergenic 35.0%
TGTTATAACGCATCAAGTGT+TGG - chr2_2:64491148-64491167 Msa0264580:intron 35.0%
! TGGATATTATTGGTCTCTAC+AGG - chr2_2:64491168-64491187 Msa0264580:intron 35.0%
TGCTTGATTGAATAGAGCTA+TGG + chr2_2:64491223-64491242 None:intergenic 35.0%
CTCTATTCAATCAAGCATCA+AGG - chr2_2:64491226-64491245 Msa0264580:intron 35.0%
! AGAAGAATGGTACTTTTCTG+CGG + chr2_2:64491393-64491412 None:intergenic 35.0%
CTATCAGGAAAGTAGAAGAA+TGG + chr2_2:64491406-64491425 None:intergenic 35.0%
! TGTGTTGACAAACTCAGATT+CGG - chr2_2:64491488-64491507 Msa0264580:CDS 35.0%
!!! CTATATTTTGGAGGTATCCT+TGG - chr2_2:64491582-64491601 Msa0264580:intron 35.0%
ACTCCCATGAAGTTCAATAA+AGG + chr2_2:64491645-64491664 None:intergenic 35.0%
GGTCGAATCATTAAAGATGT+AGG + chr2_2:64491750-64491769 None:intergenic 35.0%
TTAATGATTCGACCTCGTAT+CGG - chr2_2:64491756-64491775 Msa0264580:intron 35.0%
! AATTTCAAGTACTGCATTGC+AGG + chr2_2:64491839-64491858 None:intergenic 35.0%
AAAACTCCTTTATATGCCAC+TGG - chr2_2:64491932-64491951 Msa0264580:intron 35.0%
TACATACCAGTGGCATATAA+AGG + chr2_2:64491941-64491960 None:intergenic 35.0%
!! GTATGTTTGTTGTAATCCAG+TGG - chr2_2:64492011-64492030 Msa0264580:intron 35.0%
CTGAGATATAACATGTGCAA+TGG + chr2_2:64492109-64492128 None:intergenic 35.0%
AATTGCAGATGTTTGATGCT+TGG + chr2_2:64492339-64492358 None:intergenic 35.0%
!! TTCGATCGATTTGCCAAAAA+TGG - chr2_2:64492357-64492376 Msa0264580:intron 35.0%
! TCGATTTGCCAAAAATGGTA+AGG - chr2_2:64492362-64492381 Msa0264580:intron 35.0%
CGATTTGCCAAAAATGGTAA+GGG - chr2_2:64492363-64492382 Msa0264580:intron 35.0%
! CAGCAGAGATATATTTTCTG+GGG - chr2_2:64492432-64492451 Msa0264580:intron 35.0%
! CACTCCTTTTACGTTCAAAT+CGG - chr2_2:64492537-64492556 Msa0264580:CDS 35.0%
CCTGCATGACAATAATGAAA+TGG + chr2_2:64492584-64492603 None:intergenic 35.0%
CCATTTCATTATTGTCATGC+AGG - chr2_2:64492581-64492600 Msa0264580:CDS 35.0%
CTTCCGAAAAAACATCATCT+TGG - chr2_2:64492823-64492842 Msa0264580:CDS 35.0%
TGCTAACAAGGACTATGAAA+AGG - chr2_2:64492872-64492891 Msa0264580:CDS 35.0%
! ATCGCTGGTCCTTTTTAATA+AGG - chr2_2:64492947-64492966 Msa0264580:CDS 35.0%
TTCAAAAAGCAATTAGCGAG+CGG + chr2_2:64492983-64493002 None:intergenic 35.0%
TAATATAATGCAGATGGGCA+TGG - chr2_2:64493037-64493056 Msa0264580:intron 35.0%
CTGAACACGAATAAATTACC+GGG + chr2_2:64493166-64493185 None:intergenic 35.0%
ATTCGTGTTCAGATTTGGAA+AGG - chr2_2:64493174-64493193 Msa0264580:intron 35.0%
! TGTTTGGCCTTTGTATTTGA+TGG - chr2_2:64493292-64493311 Msa0264580:intron 35.0%
GTTGACACCATCAAATACAA+AGG + chr2_2:64493302-64493321 None:intergenic 35.0%
!! GTATTTGATGGTGTCAACTT+TGG - chr2_2:64493304-64493323 Msa0264580:intron 35.0%
!! ATTTGATGGTGTCAACTTTG+GGG - chr2_2:64493306-64493325 Msa0264580:intron 35.0%
ATGGATGAAGTTACATACCA+TGG + chr2_2:64493359-64493378 None:intergenic 35.0%
!! TTTATTTTCAGCCTTCTCCA+TGG - chr2_2:64493399-64493418 Msa0264580:CDS 35.0%
TGTTTGTGTTAGCGCTTTAT+AGG - chr2_2:64493591-64493610 Msa0264580:intron 35.0%
ATGAAGTTAACGACGATTAG+TGG - chr2_2:64493665-64493684 Msa0264580:intron 35.0%
TCATGTCATTCTTCATTCTC+AGG - chr2_2:64493698-64493717 Msa0264580:CDS 35.0%
TCTTCATTCTCAGGTTATAG+TGG - chr2_2:64493707-64493726 Msa0264580:CDS 35.0%
!!! CTACTTATTTTGTCATCTGC+TGG - chr2_2:64493750-64493769 Msa0264580:CDS 35.0%
!! TGGTGGATTCATTGGAATTT+GGG - chr2_2:64493770-64493789 Msa0264580:intron 35.0%
GAACTATTATGATGCAGGAT+TGG - chr2_2:64493945-64493964 Msa0264580:intron 35.0%
! GATTATGTATTGATGTTGCC+AGG + chr2_2:64494017-64494036 None:intergenic 35.0%
!! CTATACATCTTCTAAAGCTG+AGG + chr2_2:64494195-64494214 None:intergenic 35.0%
GCCCCACATTAACATATTTG+TGG - chr2_2:64489762-64489781 Msa0264580:three_prime_UTR 40.0%
! GGACTTGTTTGAGACGAAAA+AGG + chr2_2:64489791-64489810 None:intergenic 40.0%
! GTATCGACCAATGATGCTAT+AGG + chr2_2:64490797-64490816 None:intergenic 40.0%
CATACCTAATTGGCCAATGA+AGG + chr2_2:64490822-64490841 None:intergenic 40.0%
CTCAAATCTTGTGCATGTGT+TGG + chr2_2:64490971-64490990 None:intergenic 40.0%
TATCCATTCACTTGTGAGAC+AGG + chr2_2:64491003-64491022 None:intergenic 40.0%
! AAGTTGTGACACTGACTAGT+GGG + chr2_2:64491263-64491282 None:intergenic 40.0%
! CAGTGTCACAACTTCTTTTG+TGG - chr2_2:64491269-64491288 Msa0264580:CDS 40.0%
! AACTCTTTGGTTTCAGCATC+CGG + chr2_2:64491366-64491385 None:intergenic 40.0%
TTTCTGCGGTAAGAACTCTT+TGG + chr2_2:64491379-64491398 None:intergenic 40.0%
! GGTTTTCCTGTTGAGAAACA+AGG + chr2_2:64491438-64491457 None:intergenic 40.0%
!! AGGTTGATGGAAGTAAGAGA+AGG - chr2_2:64491535-64491554 Msa0264580:CDS 40.0%
TCTTCTTTCATTAGCGATGC+AGG - chr2_2:64491883-64491902 Msa0264580:intron 40.0%
CTTCTTTCATTAGCGATGCA+GGG - chr2_2:64491884-64491903 Msa0264580:intron 40.0%
TACTTTCAGCTATACTCCTG+TGG - chr2_2:64492283-64492302 Msa0264580:CDS 40.0%
CTTGTTTGTTCAAACTCCAC+AGG + chr2_2:64492302-64492321 None:intergenic 40.0%
TGAACGTAAAAGGAGTGACA+TGG + chr2_2:64492534-64492553 None:intergenic 40.0%
TTCAAGTCTGTCTGCAAGTT+TGG - chr2_2:64492699-64492718 Msa0264580:intron 40.0%
TGTAGAACACCTGCAATACT+CGG + chr2_2:64492914-64492933 None:intergenic 40.0%
TTGGCACTTGCATTCATTCT+TGG - chr2_2:64493068-64493087 Msa0264580:intron 40.0%
CTTGCATTCATTCTTGGAAC+AGG - chr2_2:64493074-64493093 Msa0264580:intron 40.0%
TCCTACACCTCATTAGAGTT+GGG - chr2_2:64493138-64493157 Msa0264580:intron 40.0%
TACAAAGGCCAAACAGTTCA+GGG + chr2_2:64493287-64493306 None:intergenic 40.0%
ATACAAAGGCCAAACAGTTC+AGG + chr2_2:64493288-64493307 None:intergenic 40.0%
GAAGTTACATACCATGGAGA+AGG + chr2_2:64493353-64493372 None:intergenic 40.0%
ATATAGACTCTCCATGGAGA+AGG + chr2_2:64493413-64493432 None:intergenic 40.0%
!!! CTTATTTTGTCATCTGCTGG+TGG - chr2_2:64493753-64493772 Msa0264580:exon 40.0%
!! CTGGTGGATTCATTGGAATT+TGG - chr2_2:64493769-64493788 Msa0264580:exon 40.0%
ATGAGTTTAAGAGCCTTTGC+TGG - chr2_2:64493810-64493829 Msa0264580:intron 40.0%
TCCAAGACACTTGCAACATT+TGG - chr2_2:64493902-64493921 Msa0264580:intron 40.0%
TCCAAATGTTGCAAGTGTCT+TGG + chr2_2:64493906-64493925 None:intergenic 40.0%
TTATGATGCAGGATTGGAAC+TGG - chr2_2:64493951-64493970 Msa0264580:intron 40.0%
TATGATGCAGGATTGGAACT+GGG - chr2_2:64493952-64493971 Msa0264580:intron 40.0%
ATTTGGCCACAGTTTGATTG+TGG - chr2_2:64494046-64494065 Msa0264580:intron 40.0%
TGTGAACCACAATCAAACTG+TGG + chr2_2:64494055-64494074 None:intergenic 40.0%
GTGATATCTTGTTGAGGCAT+CGG - chr2_2:64494158-64494177 Msa0264580:intron 40.0%
GTGAATTGGCACTTCAGAGA+TGG - chr2_2:64490386-64490405 Msa0264580:CDS 45.0%
GCACTTTCTTCAAGGATGCT+AGG - chr2_2:64490460-64490479 Msa0264580:intron 45.0%
GGCTGATCCTATAGCATCAT+TGG - chr2_2:64490787-64490806 Msa0264580:intron 45.0%
AAGCCTGTCTCACAAGTGAA+TGG - chr2_2:64490997-64491016 Msa0264580:intron 45.0%
! GAAGTTGTGACACTGACTAG+TGG + chr2_2:64491264-64491283 None:intergenic 45.0%
! CACAACTTCTTTTGTGGCTG+AGG - chr2_2:64491275-64491294 Msa0264580:CDS 45.0%
TCCTGTTGAGAAACAAGGCT+TGG + chr2_2:64491433-64491452 None:intergenic 45.0%
! GCTTCGTCAGCGCTATATTT+TGG - chr2_2:64491570-64491589 Msa0264580:intron 45.0%
!! TCGTCAGCGCTATATTTTGG+AGG - chr2_2:64491573-64491592 Msa0264580:intron 45.0%
CAGAAATAAGCAACGTTGCC+TGG + chr2_2:64491614-64491633 None:intergenic 45.0%
TGCATTGCAGGATGTAGCAT+AGG + chr2_2:64491827-64491846 None:intergenic 45.0%
GCTAATGAAAGAAGAACCGC+AGG + chr2_2:64491878-64491897 None:intergenic 45.0%
!! GTTTGTTGTAATCCAGTGGC+AGG - chr2_2:64492015-64492034 Msa0264580:intron 45.0%
TGCAGATGTTTGATGCTTGG+AGG + chr2_2:64492336-64492355 None:intergenic 45.0%
ACGTAAAAGGAGTGACATGG+AGG + chr2_2:64492531-64492550 None:intergenic 45.0%
ACAGACTTGAAATGCAGCCA+TGG + chr2_2:64492690-64492709 None:intergenic 45.0%
AGTCTGTCTGCAAGTTTGGT+TGG - chr2_2:64492703-64492722 Msa0264580:intron 45.0%
CATATCATATCTCACCTGCC+CGG + chr2_2:64492762-64492781 None:intergenic 45.0%
! TGCAGGTGCATTTGCTAACA+AGG - chr2_2:64492860-64492879 Msa0264580:CDS 45.0%
GTAGAACACCTGCAATACTC+GGG + chr2_2:64492913-64492932 None:intergenic 45.0%
CTTGGAACAGGATTGCACTT+TGG - chr2_2:64493086-64493105 Msa0264580:intron 45.0%
GTCCTACACCTCATTAGAGT+TGG - chr2_2:64493137-64493156 Msa0264580:intron 45.0%
CCTACACCTCATTAGAGTTG+GGG - chr2_2:64493139-64493158 Msa0264580:intron 45.0%
GTTGAGTGAGTGCTACAAAC+TGG + chr2_2:64493264-64493283 None:intergenic 45.0%
ACAAAGGCCAAACAGTTCAG+GGG + chr2_2:64493286-64493305 None:intergenic 45.0%
TGCATATTCAGCCTTCTCCA+TGG - chr2_2:64493339-64493358 Msa0264580:CDS 45.0%
GCTAACACAAACACAGACAC+TGG + chr2_2:64493584-64493603 None:intergenic 45.0%
!! TCATCTGCTGGTGGATTCAT+TGG - chr2_2:64493762-64493781 Msa0264580:exon 45.0%
TTACCTCAAGAAGCCAGCAA+AGG + chr2_2:64493826-64493845 None:intergenic 45.0%
TAGCTCCTAAGGAATTCCCA+TGG + chr2_2:64493984-64494003 None:intergenic 45.0%
AATTGCTTTGCCCGCTGCAA+TGG - chr2_2:64490757-64490776 Msa0264580:intron 50.0%
TTGGTCGATACGGCCTTCAT+TGG - chr2_2:64490806-64490825 Msa0264580:intron 50.0%
ACGGCCTTCATTGGCCAATT+AGG - chr2_2:64490815-64490834 Msa0264580:CDS 50.0%
! ATTGGTCTCTACAGGTCCAG+TGG - chr2_2:64491176-64491195 Msa0264580:intron 50.0%
AGCTCACAGGTAGAGGAGAA+TGG - chr2_2:64491318-64491337 Msa0264580:intron 50.0%
GGTAGAGGAGAATGGATGCT+TGG - chr2_2:64491326-64491345 Msa0264580:intron 50.0%
! TCTTTGGTTTCAGCATCCGG+AGG + chr2_2:64491363-64491382 None:intergenic 50.0%
ACAAGGCTTGGCAGACTATC+AGG + chr2_2:64491421-64491440 None:intergenic 50.0%
!! GCCAAGCCTTGTTTCTCAAC+AGG - chr2_2:64491429-64491448 Msa0264580:CDS 50.0%
!! TATAGCGCTGACGAAGCTGA+AGG + chr2_2:64491567-64491586 None:intergenic 50.0%
! AATCATCGTGTGCCGATACG+AGG + chr2_2:64491771-64491790 None:intergenic 50.0%
TGTCGACGCATACATACCAG+TGG + chr2_2:64491951-64491970 None:intergenic 50.0%
TTCGTCAAATCTCCTGCCAC+TGG + chr2_2:64492030-64492049 None:intergenic 50.0%
GTATTCCGCATGGGTGTCAA+CGG - chr2_2:64492078-64492097 Msa0264580:CDS 50.0%
GGTAACATTCTGCGTGACAC+TGG - chr2_2:64492631-64492650 Msa0264580:CDS 50.0%
GCATCATTAGCTGCACACCA+CGG - chr2_2:64492656-64492675 Msa0264580:intron 50.0%
ACACCACGGATCAACATCCA+TGG - chr2_2:64492670-64492689 Msa0264580:intron 50.0%
TGGTTTCAGGCGATTCTTGC+AGG - chr2_2:64492843-64492862 Msa0264580:CDS 50.0%
TACTCGGGTAGCAGTTGTTG+AGG + chr2_2:64492898-64492917 None:intergenic 50.0%
! AACTGCTACCCGAGTATTGC+AGG - chr2_2:64492902-64492921 Msa0264580:CDS 50.0%
ATGCAGATGGGCATGGTTCT+TGG - chr2_2:64493044-64493063 Msa0264580:intron 50.0%
GATGGGCATGGTTCTTGGAT+TGG - chr2_2:64493049-64493068 Msa0264580:intron 50.0%
CCCCAACTCTAATGAGGTGT+AGG + chr2_2:64493142-64493161 None:intergenic 50.0%
CACTCAACCCCTGAACTGTT+TGG - chr2_2:64493276-64493295 Msa0264580:intron 50.0%
CAGGACCATGGGAATTCCTT+AGG - chr2_2:64493976-64493995 Msa0264580:intron 50.0%
AGCCGTCAAAGCCATTGCAG+CGG + chr2_2:64490771-64490790 None:intergenic 55.0%
CTGTGAGCTTGCGTCGCTTA+AGG + chr2_2:64491307-64491326 None:intergenic 55.0%
CTTAAGCGACGCAAGCTCAC+AGG - chr2_2:64491305-64491324 Msa0264580:intron 55.0%
TAAGCAACGTTGCCTGGACG+AGG + chr2_2:64491608-64491627 None:intergenic 55.0%
!! GAGATCTCTTGGTGCTCCTG+CGG - chr2_2:64491859-64491878 Msa0264580:CDS 55.0%
! GCGATGCAGGGAGTTTTTCG+AGG - chr2_2:64491896-64491915 Msa0264580:intron 55.0%
CAGCCATGGATGTTGATCCG+TGG + chr2_2:64492676-64492695 None:intergenic 55.0%
GTTGGCAGTGTCCCTTCTTG+CGG - chr2_2:64492721-64492740 Msa0264580:intron 55.0%
AGCCAGACCATCCGCAAGAA+GGG + chr2_2:64492735-64492754 None:intergenic 55.0%
CCTCATTAGAGTTGGGGTCC+CGG - chr2_2:64493145-64493164 Msa0264580:intron 55.0%
!! GAGCCTTTGCTGGCTTCTTG+AGG - chr2_2:64493820-64493839 Msa0264580:intron 55.0%
TGCAGGATTGGAACTGGGTC+AGG - chr2_2:64493957-64493976 Msa0264580:intron 55.0%
TTGGAACTGGGTCAGGACCA+TGG - chr2_2:64493964-64493983 Msa0264580:intron 55.0%
TGGAACTGGGTCAGGACCAT+GGG - chr2_2:64493965-64493984 Msa0264580:intron 55.0%
GCTAGCGCACTTAGCTCCTA+AGG + chr2_2:64493995-64494014 None:intergenic 55.0%
!! GCCCGCTGCAATGGCTTTGA+CGG - chr2_2:64490766-64490785 Msa0264580:intron 60.0%
GCCGTCAAAGCCATTGCAGC+GGG + chr2_2:64490770-64490789 None:intergenic 60.0%
CCTACTGCAGCAAGCTCCAC+TGG + chr2_2:64491195-64491214 None:intergenic 60.0%
!! CCAGTGGAGCTTGCTGCAGT+AGG - chr2_2:64491192-64491211 Msa0264580:intron 60.0%
CGACGCAAGCTCACAGGTAG+AGG - chr2_2:64491311-64491330 Msa0264580:intron 60.0%
CTTGGAAGCTGCGACACCTC+CGG - chr2_2:64491344-64491363 Msa0264580:intron 60.0%
AGGTATCCTTGGCCTCGTCC+AGG - chr2_2:64491593-64491612 Msa0264580:intron 60.0%
CTGCACCGTTGACACCCATG+CGG + chr2_2:64492086-64492105 None:intergenic 60.0%
GCAGTGTCCCTTCTTGCGGA+TGG - chr2_2:64492725-64492744 Msa0264580:intron 60.0%
GTCCCTTCTTGCGGATGGTC+TGG - chr2_2:64492730-64492749 Msa0264580:intron 60.0%
CAGCCAGACCATCCGCAAGA+AGG + chr2_2:64492736-64492755 None:intergenic 60.0%
CCGGGACCCCAACTCTAATG+AGG + chr2_2:64493148-64493167 None:intergenic 60.0%
AGGAGCTAAGTGCGCTAGCC+TGG - chr2_2:64493996-64494015 Msa0264580:intron 60.0%
ACGTTGCCTGGACGAGGCCA+AGG + chr2_2:64491602-64491621 None:intergenic 65.0%
GCGGATGGTCTGGCTGTTGC+CGG - chr2_2:64492740-64492759 Msa0264580:intron 65.0%
CGGATGGTCTGGCTGTTGCC+GGG - chr2_2:64492741-64492760 Msa0264580:intron 65.0%
TGGTCTGGCTGTTGCCGGGC+AGG - chr2_2:64492745-64492764 Msa0264580:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 64489746 64494429 64489746 ID=Msa0264580;Name=Msa0264580
chr2_2 mRNA 64489746 64494429 64489746 ID=Msa0264580-mRNA-1;Parent=Msa0264580;Name=Msa0264580-mRNA-1;_AED=0.19;_eAED=0.19;_QI=245|1|1|1|0.92|0.85|14|425|507
chr2_2 exon 64489746 64490213 64489746 ID=Msa0264580-mRNA-1:exon:20206;Parent=Msa0264580-mRNA-1
chr2_2 exon 64490334 64490455 64490334 ID=Msa0264580-mRNA-1:exon:20205;Parent=Msa0264580-mRNA-1
chr2_2 exon 64490815 64490910 64490815 ID=Msa0264580-mRNA-1:exon:20204;Parent=Msa0264580-mRNA-1
chr2_2 exon 64491009 64491125 64491009 ID=Msa0264580-mRNA-1:exon:20203;Parent=Msa0264580-mRNA-1
chr2_2 exon 64491252 64491323 64491252 ID=Msa0264580-mRNA-1:exon:20202;Parent=Msa0264580-mRNA-1
chr2_2 exon 64491409 64491572 64491409 ID=Msa0264580-mRNA-1:exon:20201;Parent=Msa0264580-mRNA-1
chr2_2 exon 64491797 64491897 64491797 ID=Msa0264580-mRNA-1:exon:20200;Parent=Msa0264580-mRNA-1
chr2_2 exon 64492048 64492144 64492048 ID=Msa0264580-mRNA-1:exon:20199;Parent=Msa0264580-mRNA-1
chr2_2 exon 64492222 64492357 64492222 ID=Msa0264580-mRNA-1:exon:20198;Parent=Msa0264580-mRNA-1
chr2_2 exon 64492504 64492670 64492504 ID=Msa0264580-mRNA-1:exon:20197;Parent=Msa0264580-mRNA-1
chr2_2 exon 64492776 64492985 64492776 ID=Msa0264580-mRNA-1:exon:20196;Parent=Msa0264580-mRNA-1
chr2_2 exon 64493339 64493460 64493339 ID=Msa0264580-mRNA-1:exon:20195;Parent=Msa0264580-mRNA-1
chr2_2 exon 64493694 64493788 64493694 ID=Msa0264580-mRNA-1:exon:20194;Parent=Msa0264580-mRNA-1
chr2_2 exon 64494203 64494429 64494203 ID=Msa0264580-mRNA-1:exon:20193;Parent=Msa0264580-mRNA-1
chr2_2 five_prime_UTR 64494203 64494429 64494203 ID=Msa0264580-mRNA-1:five_prime_utr;Parent=Msa0264580-mRNA-1
chr2_2 five_prime_UTR 64493771 64493788 64493771 ID=Msa0264580-mRNA-1:five_prime_utr;Parent=Msa0264580-mRNA-1
chr2_2 CDS 64493694 64493770 64493694 ID=Msa0264580-mRNA-1:cds;Parent=Msa0264580-mRNA-1
chr2_2 CDS 64493339 64493460 64493339 ID=Msa0264580-mRNA-1:cds;Parent=Msa0264580-mRNA-1
chr2_2 CDS 64492776 64492985 64492776 ID=Msa0264580-mRNA-1:cds;Parent=Msa0264580-mRNA-1
chr2_2 CDS 64492504 64492670 64492504 ID=Msa0264580-mRNA-1:cds;Parent=Msa0264580-mRNA-1
chr2_2 CDS 64492222 64492357 64492222 ID=Msa0264580-mRNA-1:cds;Parent=Msa0264580-mRNA-1
chr2_2 CDS 64492048 64492144 64492048 ID=Msa0264580-mRNA-1:cds;Parent=Msa0264580-mRNA-1
chr2_2 CDS 64491797 64491897 64491797 ID=Msa0264580-mRNA-1:cds;Parent=Msa0264580-mRNA-1
chr2_2 CDS 64491409 64491572 64491409 ID=Msa0264580-mRNA-1:cds;Parent=Msa0264580-mRNA-1
chr2_2 CDS 64491252 64491323 64491252 ID=Msa0264580-mRNA-1:cds;Parent=Msa0264580-mRNA-1
chr2_2 CDS 64491009 64491125 64491009 ID=Msa0264580-mRNA-1:cds;Parent=Msa0264580-mRNA-1
chr2_2 CDS 64490815 64490910 64490815 ID=Msa0264580-mRNA-1:cds;Parent=Msa0264580-mRNA-1
chr2_2 CDS 64490334 64490455 64490334 ID=Msa0264580-mRNA-1:cds;Parent=Msa0264580-mRNA-1
chr2_2 CDS 64490171 64490213 64490171 ID=Msa0264580-mRNA-1:cds;Parent=Msa0264580-mRNA-1
chr2_2 three_prime_UTR 64489746 64490170 64489746 ID=Msa0264580-mRNA-1:three_prime_utr;Parent=Msa0264580-mRNA-1
Gene Sequence

>Msa0264580

ATGGCAGAGAAAGAGAGTTTGTTTTCTATAGGTGATTGGATGAGAATACCTATTTGCACTTTCTTCAAGGATGCTAGACTAGTATTTAAATTAGACGATCTTGGTCGCGAAATATTGTCAATTGCTTTGCCCGCTGCAATGGCTTTGACGGCTGATCCTATAGCATCATTGGTCGATACGGCCTTCATTGGCCAATTAGGTCCAGTGGAGCTTGCTGCAGTAGGAGTTTCCATAGCTCTATTCAATCAAGCATCAAGGATCTTTATATTCCCACTAGTCAGTGTCACAACTTCTTTTGTGGCTGAGGAAGATGCCTTAAGCGACGCAAGCTCACAGGTAGAGGAGAATGGATGCTTGGAAGCTGCGACACCTCCGGATGCTGAAACCAAAGAGTTCTTACCGCAGAAAAATTCGGTAGTTGAAAGCTTTAATGTAGTTAAGGTTGATGGAAGTAAGAGAAGGCAAATTCCTTCAGCTTCGTCAGCGCTATATTTTGGAGGTATCCTTGGCCTCGTCCAGGCAACGTTGCTTATTTCTGCAGCAAAACCTTTATTGAACTTCATGGGAGTGACTTCTGATTCTCCTATGCTACATCCTGCAATGCAGTACTTGAAATTGAGATCTCTTGGTGCTCCTGCGGTTCTTCTTTCATTAGCGATGCAGGGAGTTTTTCGAGGATTTAAAGACACTAAAACTCCTTTATATGCCACTGTGGCAGGAGATTTGACGAATATAGCACTAGATCCGCTTTTCATTTTTGTATTCCGCATGGGTGTCAACGGTGCAGCCATTGCACATGTTATATCTCAGTATCTACTTTCAGCTATACTCCTGTGGAGTTTGAACAAACAAGTTGATCTTATACCTCCAAGCATCAAACATCTGCAATTCGATCGATTTGCCAAAAATGGTTTTCTATTATTCATGAGAGTCATTGCGGTAACATTCTGCGTGACACTGGCTGCATCATTAGCTGCACACCACGGATCAACATCCATGGCTGCATTTCAAGTCTGTCTGCAAGTTTGGTTGGCAGTGTCCCTTCTTGCGGATGGTCTGGCTGTTGCCGGGCAGGCGATTCTTGCAGGTGCATTTGCTAACAAGGACTATGAAAAGGCCTCAACAACTGCTACCCGAGTATTGCAGATGGGCATGGTTCTTGGATTGGCACTTGCATTCATTCTTGGAACAGGATTGCACTTTGGAGCTAAACTATTTACAAAAGATGATGATGTCCTACACCTCATTAGAGTTGGGGTCCCGTTTGTAGCACTCACTCAACCCCTGAACTGTTTGGCCTTTGTATTTGATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATGGTTATAGTGGCAATTATTAGCATAATTTGTCTACTTATTTTGTCATCTGCTGGTGGATTCATTGGAATTTGGGTTGCATTGACAATCTATATGAGTTTAAGAGCCTTTGCTGGCTTCTTGAGGATTGGAACTGGGTCAGGACCATGGGAATTCCTTAGGAGCTAA

Protein sequence

>Msa0264580

MAEKESLFSIGDWMRIPICTFFKDARLVFKLDDLGREILSIALPAAMALTADPIASLVDTAFIGQLGPVELAAVGVSIALFNQASRIFIFPLVSVTTSFVAEEDALSDASSQVEENGCLEAATPPDAETKEFLPQKNSVVESFNVVKVDGSKRRQIPSASSALYFGGILGLVQATLLISAAKPLLNFMGVTSDSPMLHPAMQYLKLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIALDPLFIFVFRMGVNGAAIAHVISQYLLSAILLWSLNKQVDLIPPSIKHLQFDRFAKNGFLLFMRVIAVTFCVTLAASLAAHHGSTSMAAFQVCLQVWLAVSLLADGLAVAGQAILAGAFANKDYEKASTTATRVLQMGMVLGLALAFILGTGLHFGAKLFTKDDDVLHLIRVGVPFVALTQPLNCLAFVFDGVNFGASDFAYSAFSMVIVAIISIICLLILSSAGGFIGIWVALTIYMSLRAFAGFLRIGTGSGPWEFLRS*