AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0339970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0339970 MtrunA17_Chr2g0328761 98.028 507 10 0 1 507 1 507 0.0 995
Msa0339970 MtrunA17_Chr3g0088471 59.579 522 177 3 16 506 17 535 0.0 606
Msa0339970 MtrunA17_Chr8g0352151 55.515 544 188 5 12 506 13 551 0.0 565
Msa0339970 MtrunA17_Chr8g0352171 60.734 354 139 0 154 507 35 388 1.03e-152 441
Msa0339970 MtrunA17_Chr5g0448591 43.067 476 236 3 31 506 109 549 1.13e-126 380
Msa0339970 MtrunA17_Chr7g0243421 44.195 267 149 0 239 505 4 270 5.73e-71 227
Msa0339970 MtrunA17_Chr7g0243411 45.498 211 81 2 29 236 110 289 9.85e-40 146
Msa0339970 MtrunA17_Chr4g0035751 25.738 474 283 14 36 495 95 513 4.74e-20 93.2
Msa0339970 MtrunA17_Chr4g0035741 25.417 480 288 15 36 500 108 532 3.25e-19 90.9
Msa0339970 MtrunA17_Chr4g0035791 24.211 475 300 11 36 500 106 530 1.35e-18 89.0
Msa0339970 MtrunA17_Chr8g0352161 72.549 51 14 0 66 116 3 53 1.00e-16 76.6
Msa0339970 MtrunA17_Chr4g0035811 24.632 475 298 13 36 500 134 558 2.01e-16 82.0
Msa0339970 MtrunA17_Chr4g0035761 24.528 477 296 15 36 500 109 533 3.79e-14 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0339970 AT1G51340.3 70.356 506 140 4 12 507 10 515 0.0 669
Msa0339970 AT1G51340.5 70.356 506 140 4 12 507 10 515 0.0 669
Msa0339970 AT1G51340.2 70.356 506 140 4 12 507 10 515 0.0 669
Msa0339970 AT1G51340.1 71.224 490 131 4 28 507 20 509 0.0 659
Msa0339970 AT3G08040.1 59.881 506 186 3 16 506 15 518 0.0 560
Msa0339970 AT1G51340.4 69.291 381 107 4 12 382 10 390 4.12e-168 481
Msa0339970 AT3G08040.2 59.158 404 154 2 103 506 22 414 1.10e-163 470
Msa0339970 AT4G38380.3 44.421 475 240 3 33 507 32 482 1.83e-127 380
Msa0339970 AT4G38380.2 44.421 475 240 3 33 507 104 554 3.20e-126 380
Msa0339970 AT4G38380.1 44.421 475 240 3 33 507 104 554 3.20e-126 380
Msa0339970 AT4G38380.4 44.540 467 235 3 41 507 2 444 4.64e-125 373
Msa0339970 AT4G38380.5 44.000 475 232 3 33 507 104 544 1.11e-124 375
Msa0339970 AT2G38330.1 44.654 477 230 2 31 507 73 515 2.87e-123 371
Msa0339970 AT2G21340.1 25.652 460 273 16 36 480 117 522 8.32e-17 83.6
Msa0339970 AT2G21340.2 25.217 460 272 16 36 480 117 519 1.11e-15 80.1
Msa0339970 AT4G39030.1 24.788 472 289 16 36 494 100 518 1.27e-15 80.1

Find 155 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAATCAGAAACGTCTTTA+AGG 0.166196 2_4:+61231191 None:intergenic
CTGGTGGATTCATTGGAATT+TGG 0.174098 2_4:-61227255 Msa0339970:CDS
GCTTCGTCAGCGCTATATTT+TGG 0.205113 2_4:-61229454 Msa0339970:CDS
ACATAATCATAGCTTATATT+TGG 0.219856 2_4:-61226995 Msa0339970:three_prime_UTR
ACTCATAATGACATGAAATA+TGG 0.232021 2_4:-61226781 Msa0339970:three_prime_UTR
ACGGCCTTCATTGGCCAATT+AGG 0.238684 2_4:-61230209 Msa0339970:intron
ATGCAGATGGGCATGGTTCT+TGG 0.278565 2_4:-61227980 Msa0339970:intron
TTCAAGTCTGTCTGCAAGTT+TGG 0.279500 2_4:-61228325 Msa0339970:CDS
GCGGATGGTCTGGCTGTTGC+CGG 0.285261 2_4:-61228284 Msa0339970:CDS
TATTTGATGGTGTCAACTTT+GGG 0.292922 2_4:-61227719 Msa0339970:CDS
TGGTTTCAGGCGATTCTTGC+AGG 0.293939 2_4:-61228181 Msa0339970:intron
TTGGCACTTGCATTCATTCT+TGG 0.305585 2_4:-61227956 Msa0339970:CDS
CTAAGACTATAGTGGAAATT+AGG 0.308006 2_4:-61231285 None:intergenic
AACATGATAACATACCTAAT+TGG 0.313690 2_4:+61230195 None:intergenic
AATTTCAAGTACTGCATTGC+AGG 0.318886 2_4:+61229188 None:intergenic
TGGTGGATTCATTGGAATTT+GGG 0.325300 2_4:-61227254 Msa0339970:CDS
AAGTTTATATGAAAATAAAT+TGG 0.326586 2_4:+61226621 None:intergenic
GGACTTGTTTGAGACGAAAA+AGG 0.328496 2_4:+61231237 None:intergenic
AGAAAGGAATAACATGAAAA+AGG 0.329832 2_4:+61231121 None:intergenic
AAAATTACATAAACAACAAC+TGG 0.330624 2_4:-61226657 Msa0339970:three_prime_UTR
TGTTTGGCCTTTGTATTTGA+TGG 0.334770 2_4:-61227732 Msa0339970:CDS
AAAACCTTTATTGAACTTCA+TGG 0.337472 2_4:-61229386 Msa0339970:CDS
ATACAAAGGCCAAACAGTTC+AGG 0.350521 2_4:+61227739 None:intergenic
AACTCTTTGGTTTCAGCATC+CGG 0.351723 2_4:+61229661 None:intergenic
ACCTATTTGCACTTTCTTCA+AGG 0.352355 2_4:-61230573 Msa0339970:CDS
TGAAAGCTTTAATGTAGTTA+AGG 0.364155 2_4:-61229509 Msa0339970:CDS
AACTGCTACCCGAGTATTGC+AGG 0.367216 2_4:-61228122 Msa0339970:intron
CATGAAATATGGGATCAAAA+AGG 0.368550 2_4:-61226770 Msa0339970:three_prime_UTR
TCATCTGCTGGTGGATTCAT+TGG 0.373915 2_4:-61227262 Msa0339970:CDS
TTTCACCTAAAACAGTGAAT+TGG 0.378901 2_4:-61230653 Msa0339970:intron
GCCCGCTGCAATGGCTTTGA+CGG 0.379476 2_4:-61230258 Msa0339970:CDS
CTTGCATTCATTCTTGGAAC+AGG 0.384448 2_4:-61227950 Msa0339970:CDS
TTATGATGCAGGATTGGAAC+TGG 0.389829 2_4:-61227073 Msa0339970:intron
TTTAATGTAGTTAAGGTTGA+TGG 0.390926 2_4:-61229502 Msa0339970:CDS
ACTCCCATGAAGTTCAATAA+AGG 0.391036 2_4:+61229382 None:intergenic
GTATTTAAATTAGACGATCT+TGG 0.391627 2_4:-61230305 Msa0339970:CDS
TACATACCAGTGGCATATAA+AGG 0.392262 2_4:+61229086 None:intergenic
CAGAAATAAGCAACGTTGCC+TGG 0.395145 2_4:+61229413 None:intergenic
GTCCCTTCTTGCGGATGGTC+TGG 0.395512 2_4:-61228294 Msa0339970:CDS
TCTTCTTTCATTAGCGATGC+AGG 0.402072 2_4:-61229141 Msa0339970:CDS
TGGTCTGGCTGTTGCCGGGC+AGG 0.402764 2_4:-61228279 Msa0339970:intron
AGGACTCAACTGAAATTAAC+AGG 0.404733 2_4:+61231066 None:intergenic
CTGTGAGCTTGCGTCGCTTA+AGG 0.406638 2_4:+61229720 None:intergenic
TCCTACACCTCATTAGAGTT+GGG 0.408785 2_4:-61227886 Msa0339970:CDS
TCTTCATTCTCAGGTTATAG+TGG 0.409610 2_4:-61227317 Msa0339970:intron
GTATTTGATGGTGTCAACTT+TGG 0.411044 2_4:-61227720 Msa0339970:CDS
AGAAATCATTTGAAAAGAAT+AGG 0.418081 2_4:-61226908 Msa0339970:three_prime_UTR
CACTCAACCCCTGAACTGTT+TGG 0.424826 2_4:-61227748 Msa0339970:CDS
CTCATAATGACATGAAATAT+GGG 0.425245 2_4:-61226780 Msa0339970:three_prime_UTR
ATGAGTTTAAGAGCCTTTGC+TGG 0.427946 2_4:-61227214 Msa0339970:CDS
TTGGTCGATACGGCCTTCAT+TGG 0.428017 2_4:-61230218 Msa0339970:CDS
TTGTGGTTCACATTAGTAAA+GGG 0.428110 2_4:-61226961 Msa0339970:three_prime_UTR
TTTCTGCGGTAAGAACTCTT+TGG 0.430202 2_4:+61229648 None:intergenic
AATTGCTTTGCCCGCTGCAA+TGG 0.438261 2_4:-61230267 Msa0339970:CDS
CGACGCAAGCTCACAGGTAG+AGG 0.442007 2_4:-61229713 Msa0339970:CDS
GCCGTCAAAGCCATTGCAGC+GGG 0.444777 2_4:+61230257 None:intergenic
GCCCCACATTAACATATTTG+TGG 0.450475 2_4:-61231263 Msa0339970:five_prime_UTR
CTTGGAACAGGATTGCACTT+TGG 0.450496 2_4:-61227938 Msa0339970:CDS
TACTTGAAATTGAGATCTCT+TGG 0.450593 2_4:-61229176 Msa0339970:CDS
TGCAGGATTGGAACTGGGTC+AGG 0.452693 2_4:-61227067 Msa0339970:intron
GGCTGATCCTATAGCATCAT+TGG 0.454668 2_4:-61230237 Msa0339970:CDS
CAGGACCATGGGAATTCCTT+AGG 0.460543 2_4:-61227048 Msa0339970:CDS
AGGAGCTAAGTGCGCTAGCC+TGG 0.461068 2_4:-61227028 Msa0339970:exon
CTTGGAAGCTGCGACACCTC+CGG 0.465998 2_4:-61229680 Msa0339970:CDS
TCCTTGAAGAAAGTGCAAAT+AGG 0.466690 2_4:+61230572 None:intergenic
AATTGCAGATGTTTGATGCT+TGG 0.468820 2_4:+61228688 None:intergenic
ATTGTGGTTCACATTAGTAA+AGG 0.475969 2_4:-61226962 Msa0339970:three_prime_UTR
TGCAGGTGCATTTGCTAACA+AGG 0.477862 2_4:-61228164 Msa0339970:CDS
TACAAAGGCCAAACAGTTCA+GGG 0.478905 2_4:+61227740 None:intergenic
CGGATGGTCTGGCTGTTGCC+GGG 0.479805 2_4:-61228283 Msa0339970:CDS
AAACCTTTATTGAACTTCAT+GGG 0.481789 2_4:-61229385 Msa0339970:CDS
GTGATATCTTGTTGAGGCAT+CGG 0.482444 2_4:-61226866 Msa0339970:three_prime_UTR
GATGGGCATGGTTCTTGGAT+TGG 0.483353 2_4:-61227975 Msa0339970:CDS
GCACTTTCTTCAAGGATGCT+AGG 0.484597 2_4:-61230565 Msa0339970:intron
TGGAACTGGGTCAGGACCAT+GGG 0.486703 2_4:-61227059 Msa0339970:CDS
CCTACTGCAGCAAGCTCCAC+TGG 0.487433 2_4:+61229832 None:intergenic
GTATCGACCAATGATGCTAT+AGG 0.489373 2_4:+61230230 None:intergenic
ATTTGGCCACAGTTTGATTG+TGG 0.495286 2_4:-61226978 Msa0339970:three_prime_UTR
GTCCTACACCTCATTAGAGT+TGG 0.498396 2_4:-61227887 Msa0339970:CDS
TGCTAACAAGGACTATGAAA+AGG 0.500938 2_4:-61228152 Msa0339970:CDS
GCAGTGTCCCTTCTTGCGGA+TGG 0.503081 2_4:-61228299 Msa0339970:CDS
CTTGTTTGTTCAAACTCCAC+AGG 0.509281 2_4:+61228725 None:intergenic
GCTAGCGCACTTAGCTCCTA+AGG 0.510397 2_4:+61227032 None:intergenic
CATACCTAATTGGCCAATGA+AGG 0.513148 2_4:+61230205 None:intergenic
AGTCTGTCTGCAAGTTTGGT+TGG 0.514353 2_4:-61228321 Msa0339970:CDS
GTAGCAGTCTAAGACTATAG+TGG 0.519360 2_4:-61231293 None:intergenic
CCTCATTAGAGTTGGGGTCC+CGG 0.519902 2_4:-61227879 Msa0339970:intron
CCAGTGGAGCTTGCTGCAGT+AGG 0.523504 2_4:-61229832 Msa0339970:CDS
GATTATGTATTGATGTTGCC+AGG 0.524125 2_4:+61227010 None:intergenic
AGCTCACAGGTAGAGGAGAA+TGG 0.528973 2_4:-61229706 Msa0339970:CDS
GTCCACAAATATGTTAATGT+GGG 0.533008 2_4:+61231261 None:intergenic
TGTAGAACACCTGCAATACT+CGG 0.533112 2_4:+61228113 None:intergenic
CTTAAGCGACGCAAGCTCAC+AGG 0.533775 2_4:-61229719 Msa0339970:CDS
CTTCTTTCATTAGCGATGCA+GGG 0.537717 2_4:-61229140 Msa0339970:CDS
TGCAGATGTTTGATGCTTGG+AGG 0.538167 2_4:+61228691 None:intergenic
TTGGAACTGGGTCAGGACCA+TGG 0.539529 2_4:-61227060 Msa0339970:CDS
CAGCCAGACCATCCGCAAGA+AGG 0.542007 2_4:+61228291 None:intergenic
TGTCCACAAATATGTTAATG+TGG 0.542132 2_4:+61231260 None:intergenic
TCTGCAATCTGAAAGAAGAA+AGG 0.543648 2_4:+61231105 None:intergenic
GGTAGAGGAGAATGGATGCT+TGG 0.544369 2_4:-61229698 Msa0339970:CDS
TATAGCATCATTGGTCGATA+CGG 0.544448 2_4:-61230228 Msa0339970:CDS
GAGCCTTTGCTGGCTTCTTG+AGG 0.546982 2_4:-61227204 Msa0339970:intron
AAAACTCCTTTATATGCCAC+TGG 0.548051 2_4:-61229092 Msa0339970:intron
ACGTTGCCTGGACGAGGCCA+AGG 0.550365 2_4:+61229425 None:intergenic
AGGTATCCTTGGCCTCGTCC+AGG 0.551223 2_4:-61229431 Msa0339970:CDS
GTATTCCGCATGGGTGTCAA+CGG 0.551236 2_4:-61228946 Msa0339970:CDS
CTCTATTCAATCAAGCATCA+AGG 0.567403 2_4:-61229798 Msa0339970:CDS
TGCTTGATTGAATAGAGCTA+TGG 0.567545 2_4:+61229804 None:intergenic
GGTAACATTCTGCGTGACAC+TGG 0.567656 2_4:-61228393 Msa0339970:CDS
GTTGGCAGTGTCCCTTCTTG+CGG 0.568099 2_4:-61228303 Msa0339970:CDS
GAGATCTCTTGGTGCTCCTG+CGG 0.568151 2_4:-61229165 Msa0339970:CDS
TGCATATTCAGCCTTCTCCA+TGG 0.574962 2_4:-61227685 Msa0339970:intron
TAATATAATGCAGATGGGCA+TGG 0.575585 2_4:-61227987 Msa0339970:intron
GCAACAAAACAAAACAACAT+TGG 0.576245 2_4:+61231216 None:intergenic
AGCCAGACCATCCGCAAGAA+GGG 0.579779 2_4:+61228292 None:intergenic
TATTAGATAGATACACTTGG+AGG 0.580107 2_4:+61226803 None:intergenic
GTGAATTGGCACTTCAGAGA+TGG 0.580452 2_4:-61230639 Msa0339970:exon
TAAGCAACGTTGCCTGGACG+AGG 0.584099 2_4:+61229419 None:intergenic
CATTTGAAAAGAATAGGCAT+TGG 0.586165 2_4:-61226902 Msa0339970:three_prime_UTR
CATATCATATCTCACCTGCC+CGG 0.595074 2_4:+61228265 None:intergenic
GAAGTTACATACCATGGAGA+AGG 0.599442 2_4:+61227674 None:intergenic
ACAGACTTGAAATGCAGCCA+TGG 0.602463 2_4:+61228337 None:intergenic
ATTTGATGGTGTCAACTTTG+GGG 0.602557 2_4:-61227718 Msa0339970:CDS
CCGGGACCCCAACTCTAATG+AGG 0.604305 2_4:+61227879 None:intergenic
TACTTTCAGCTATACTCCTG+TGG 0.608095 2_4:-61228741 Msa0339970:CDS
TACTCGGGTAGCAGTTGTTG+AGG 0.609106 2_4:+61228129 None:intergenic
TGCATTGCAGGATGTAGCAT+AGG 0.609472 2_4:+61229200 None:intergenic
GAAGTTGTGACACTGACTAG+TGG 0.610876 2_4:+61229763 None:intergenic
GCTAATGAAAGAAGAACCGC+AGG 0.618157 2_4:+61229149 None:intergenic
ATTGGTCTCTACAGGTCCAG+TGG 0.619428 2_4:-61229848 Msa0339970:intron
GTAGAACACCTGCAATACTC+GGG 0.620615 2_4:+61228114 None:intergenic
CTATACATCTTCTAAAGCTG+AGG 0.626582 2_4:+61226832 None:intergenic
AAGTTGTGACACTGACTAGT+GGG 0.626798 2_4:+61229764 None:intergenic
CCCCAACTCTAATGAGGTGT+AGG 0.629440 2_4:+61227885 None:intergenic
AGCCGTCAAAGCCATTGCAG+CGG 0.630911 2_4:+61230256 None:intergenic
ATTATTCATGAGAGTCATTG+CGG 0.631200 2_4:-61228414 Msa0339970:CDS
TATGATGCAGGATTGGAACT+GGG 0.631342 2_4:-61227072 Msa0339970:intron
AGGTTGATGGAAGTAAGAGA+AGG 0.632842 2_4:-61229489 Msa0339970:CDS
ACACCACGGATCAACATCCA+TGG 0.637699 2_4:-61228354 Msa0339970:CDS
TTACCTCAAGAAGCCAGCAA+AGG 0.639714 2_4:+61227201 None:intergenic
CTGAGATATAACATGTGCAA+TGG 0.641731 2_4:+61228918 None:intergenic
CCTACACCTCATTAGAGTTG+GGG 0.644035 2_4:-61227885 Msa0339970:CDS
GTTGACACCATCAAATACAA+AGG 0.646571 2_4:+61227725 None:intergenic
TCCACAAATATGTTAATGTG+GGG 0.651252 2_4:+61231262 None:intergenic
GAGTATTAGATAGATACACT+TGG 0.652013 2_4:+61226800 None:intergenic
TATAGCGCTGACGAAGCTGA+AGG 0.652574 2_4:+61229460 None:intergenic
AAATTACATAAACAACAACT+GGG 0.667467 2_4:-61226656 Msa0339970:three_prime_UTR
TCTTTGGTTTCAGCATCCGG+AGG 0.669170 2_4:+61229664 None:intergenic
TAGCTCCTAAGGAATTCCCA+TGG 0.675106 2_4:+61227043 None:intergenic
ATGATTGTGATATCTTGTTG+AGG 0.693625 2_4:-61226872 Msa0339970:three_prime_UTR
ACAAAGGCCAAACAGTTCAG+GGG 0.700393 2_4:+61227741 None:intergenic
TGTGAACCACAATCAAACTG+TGG 0.714063 2_4:+61226972 None:intergenic
GCATCATTAGCTGCACACCA+CGG 0.714665 2_4:-61228368 Msa0339970:CDS
CAGCCATGGATGTTGATCCG+TGG 0.715332 2_4:+61228351 None:intergenic
CTGCACCGTTGACACCCATG+CGG 0.715966 2_4:+61228941 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATATATCATAATTTAG+AGG + chr2_4:61227126-61227145 None:intergenic 10.0%
!! AAGTTTATATGAAAATAAAT+TGG + chr2_4:61231278-61231297 None:intergenic 10.0%
!!! ATTTATTTTCATATAAACTT+TGG - chr2_4:61231278-61231297 Msa0339970:five_prime_UTR 10.0%
!! AAAAAATTGAATATGTATCA+AGG + chr2_4:61227054-61227073 None:intergenic 15.0%
!!! ACATATTCAATTTTTTTTGT+TGG - chr2_4:61227058-61227077 Msa0339970:CDS 15.0%
!! AAAAATTAGAAGAAACAAAA+AGG + chr2_4:61227173-61227192 None:intergenic 15.0%
!!! TAGTTAGCAATTATATTTTT+AGG - chr2_4:61227437-61227456 Msa0339970:intron 15.0%
!! AAAAATGAACTAAAAATATG+AGG + chr2_4:61227485-61227504 None:intergenic 15.0%
!! AAAATATGAATAGAACTATA+GGG - chr2_4:61227912-61227931 Msa0339970:CDS 15.0%
!!! ACTTAATTACATTGATTATT+TGG + chr2_4:61227980-61227999 None:intergenic 15.0%
!! TATAGTTTAATACAGATTTA+AGG - chr2_4:61229035-61229054 Msa0339970:intron 15.0%
!! GTATAAACTTTAAATAACAT+TGG + chr2_4:61229350-61229369 None:intergenic 15.0%
!! TTAAAGTTTATACACAAATT+TGG - chr2_4:61229357-61229376 Msa0339970:intron 15.0%
!! TAATTATAATATAATGCAGA+TGG - chr2_4:61229903-61229922 Msa0339970:intron 15.0%
!! AATTATAATATAATGCAGAT+GGG - chr2_4:61229904-61229923 Msa0339970:intron 15.0%
!!! AAATTTCTCCTTATTTTTTT+AGG - chr2_4:61230960-61230979 Msa0339970:intron 15.0%
!!! TTTATGTAATTTTGTCTTTT+GGG + chr2_4:61231232-61231251 None:intergenic 15.0%
!! AATATCACATTGATAAACAT+TGG - chr2_4:61227143-61227162 Msa0339970:intron 20.0%
!! AATAATTGAAAAAATTGTGG+AGG + chr2_4:61227380-61227399 None:intergenic 20.0%
!! CACAATAATTGAAAAAATTG+TGG + chr2_4:61227383-61227402 None:intergenic 20.0%
!! AAAATATAATTGCTAACTAG+AGG + chr2_4:61227436-61227455 None:intergenic 20.0%
!! GAAAATATGAATAGAACTAT+AGG - chr2_4:61227911-61227930 Msa0339970:CDS 20.0%
!! ACGATGATTGAAAAATAATA+TGG - chr2_4:61228654-61228673 Msa0339970:intron 20.0%
!!! ATAATATGGATTATTTGTAC+AGG - chr2_4:61228668-61228687 Msa0339970:CDS 20.0%
!! GTTTATAGTCCTTATTAAAA+AGG + chr2_4:61229831-61229850 None:intergenic 20.0%
!! ACATAATCATAGCTTATATT+TGG - chr2_4:61230901-61230920 Msa0339970:intron 20.0%
!! AGAAATCATTTGAAAAGAAT+AGG - chr2_4:61230988-61231007 Msa0339970:intron 20.0%
!!! TGAAAACAATTTTACATGTA+CGG - chr2_4:61231169-61231188 Msa0339970:five_prime_UTR 20.0%
!!! GTTTATGTAATTTTGTCTTT+TGG + chr2_4:61231233-61231252 None:intergenic 20.0%
!! AAAATTACATAAACAACAAC+TGG - chr2_4:61231239-61231258 Msa0339970:five_prime_UTR 20.0%
!! AAATTACATAAACAACAACT+GGG - chr2_4:61231240-61231259 Msa0339970:five_prime_UTR 20.0%
! TATAATCAGAAACGTCTTTA+AGG + chr2_4:61226708-61226727 None:intergenic 25.0%
! AGAAAGGAATAACATGAAAA+AGG + chr2_4:61226778-61226797 None:intergenic 25.0%
! TGAAAAATAACACTATCTCA+AGG + chr2_4:61226893-61226912 None:intergenic 25.0%
!! ACCTTTTCTTTTCATTATGA+TGG - chr2_4:61226923-61226942 Msa0339970:three_prime_UTR 25.0%
! ACCATCATAATGAAAAGAAA+AGG + chr2_4:61226927-61226946 None:intergenic 25.0%
! AATTAGAAGAAACAAAAAGG+TGG + chr2_4:61227170-61227189 None:intergenic 25.0%
!!! AAAGAGAGTTTGTTTTCTAT+AGG - chr2_4:61227285-61227304 Msa0339970:CDS 25.0%
! TTTCATAATTCCATGTACTT+AGG - chr2_4:61227535-61227554 Msa0339970:intron 25.0%
! GTATTTAAATTAGACGATCT+TGG - chr2_4:61227591-61227610 Msa0339970:intron 25.0%
! AACATGATAACATACCTAAT+TGG + chr2_4:61227704-61227723 None:intergenic 25.0%
!! TAGTAATCAGGAAATTTTCT+TGG + chr2_4:61228331-61228350 None:intergenic 25.0%
!! TGAAAGCTTTAATGTAGTTA+AGG - chr2_4:61228387-61228406 Msa0339970:CDS 25.0%
! TTTAATGTAGTTAAGGTTGA+TGG - chr2_4:61228394-61228413 Msa0339970:CDS 25.0%
! AAAACCTTTATTGAACTTCA+TGG - chr2_4:61228510-61228529 Msa0339970:intron 25.0%
! AAACCTTTATTGAACTTCAT+GGG - chr2_4:61228511-61228530 Msa0339970:intron 25.0%
!! ATATCTCAGTATGTTTTACT+TGG - chr2_4:61228992-61229011 Msa0339970:CDS 25.0%
! CAAAATCAAATAGAAGCAAA+AGG + chr2_4:61229096-61229115 None:intergenic 25.0%
! TTCAAATTAACTGTAAATGC+AGG - chr2_4:61229128-61229147 Msa0339970:CDS 25.0%
!! TTATAAACCCTTACCATTTT+TGG + chr2_4:61229245-61229264 None:intergenic 25.0%
! AATCCTTATTATCTACGAAA+TGG - chr2_4:61229263-61229282 Msa0339970:intron 25.0%
! AAACCATTTCGTAGATAATA+AGG + chr2_4:61229269-61229288 None:intergenic 25.0%
!!! AAACCAAGATGATGTTTTTT+CGG + chr2_4:61229701-61229720 None:intergenic 25.0%
! AATTTATTCGTGTTCAGATT+TGG - chr2_4:61230041-61230060 Msa0339970:intron 25.0%
! AATGAAAGTTCTACTCTTTA+GGG + chr2_4:61230097-61230116 None:intergenic 25.0%
! ATTAAAATATAGACTCTCCA+TGG + chr2_4:61230291-61230310 None:intergenic 25.0%
! TTTCAATGATTCTTCAAGAT+TGG + chr2_4:61230319-61230338 None:intergenic 25.0%
!!! AGAATATGAAAGAAAGCATT+AGG + chr2_4:61230743-61230762 None:intergenic 25.0%
! TCTCAAGACCTAAAAAAATA+AGG + chr2_4:61230971-61230990 None:intergenic 25.0%
! ACTCATAATGACATGAAATA+TGG - chr2_4:61231115-61231134 Msa0339970:five_prime_UTR 25.0%
! CTCATAATGACATGAAATAT+GGG - chr2_4:61231116-61231135 Msa0339970:five_prime_UTR 25.0%
!! ACGGATTTCTTTTCTTTTTT+TGG - chr2_4:61231188-61231207 Msa0339970:five_prime_UTR 25.0%
!! CGGATTTCTTTTCTTTTTTT+GGG - chr2_4:61231189-61231208 Msa0339970:five_prime_UTR 25.0%
TCCACAAATATGTTAATGTG+GGG + chr2_4:61226637-61226656 None:intergenic 30.0%
GTCCACAAATATGTTAATGT+GGG + chr2_4:61226638-61226657 None:intergenic 30.0%
TGTCCACAAATATGTTAATG+TGG + chr2_4:61226639-61226658 None:intergenic 30.0%
GCAACAAAACAAAACAACAT+TGG + chr2_4:61226683-61226702 None:intergenic 30.0%
AACTCTAGCTATGAAATCAA+TGG + chr2_4:61226857-61226876 None:intergenic 30.0%
TTGATTTCATAGCTAGAGTT+TGG - chr2_4:61226857-61226876 Msa0339970:three_prime_UTR 30.0%
!!! TTGTTTTTTCTTTGAGTGAG+AGG - chr2_4:61226958-61226977 Msa0339970:three_prime_UTR 30.0%
!!! TGTTTTTTCTTTGAGTGAGA+GGG - chr2_4:61226959-61226978 Msa0339970:three_prime_UTR 30.0%
GTCAGTATTTAACCACATAA+TGG - chr2_4:61227080-61227099 Msa0339970:intron 30.0%
CACATATATTCTCCATTATG+TGG + chr2_4:61227095-61227114 None:intergenic 30.0%
TTTCACCTAAAACAGTGAAT+TGG - chr2_4:61227243-61227262 Msa0339970:CDS 30.0%
!! GTTTGTTTTCTATAGGTGAT+TGG - chr2_4:61227292-61227311 Msa0339970:CDS 30.0%
GAAAAAATTGTGGAGGAAAT+AGG + chr2_4:61227373-61227392 None:intergenic 30.0%
AAGAGTTAAACCTAAGTACA+TGG + chr2_4:61227548-61227567 None:intergenic 30.0%
TCTTGCTCTACTAATTTGAA+CGG + chr2_4:61227806-61227825 None:intergenic 30.0%
!! CATCAAGTGTTGGATATTAT+TGG - chr2_4:61228030-61228049 Msa0339970:intron 30.0%
ACATTCGTATGTTAGTAATC+AGG + chr2_4:61228343-61228362 None:intergenic 30.0%
ACATTACGAGACTTACTTAT+AGG - chr2_4:61228562-61228581 Msa0339970:intron 30.0%
TACTTGAAATTGAGATCTCT+TGG - chr2_4:61228720-61228739 Msa0339970:CDS 30.0%
CGGAATACAAAAATGAAAAG+CGG + chr2_4:61228938-61228957 None:intergenic 30.0%
!! TTTCATTTTTGTATTCCGCA+TGG - chr2_4:61228940-61228959 Msa0339970:CDS 30.0%
!! TTCATTTTTGTATTCCGCAT+GGG - chr2_4:61228941-61228960 Msa0339970:CDS 30.0%
AGGAAATTAAGAGACAAGAT+AGG + chr2_4:61229076-61229095 None:intergenic 30.0%
! TTCAGCAGAGATATATTTTC+TGG - chr2_4:61229302-61229321 Msa0339970:intron 30.0%
! TCAGCAGAGATATATTTTCT+GGG - chr2_4:61229303-61229322 Msa0339970:intron 30.0%
!! ATTACCGATTTGAACGTAAA+AGG + chr2_4:61229416-61229435 None:intergenic 30.0%
ATGACAATAATGAAATGGGA+AGG + chr2_4:61229451-61229470 None:intergenic 30.0%
CTGCATGACAATAATGAAAT+GGG + chr2_4:61229455-61229474 None:intergenic 30.0%
ATTATTCATGAGAGTCATTG+CGG - chr2_4:61229482-61229501 Msa0339970:CDS 30.0%
GATATGATTCATTACTCTCT+CGG - chr2_4:61229648-61229667 Msa0339970:CDS 30.0%
AAAAACATCATCTTGGTTTC+AGG - chr2_4:61229702-61229721 Msa0339970:CDS 30.0%
!!! CATTATTTTAAGAAGATCGC+TGG - chr2_4:61229804-61229823 Msa0339970:CDS 30.0%
TCTGAACACGAATAAATTAC+CGG + chr2_4:61230039-61230058 None:intergenic 30.0%
GAATGAAAGTTCTACTCTTT+AGG + chr2_4:61230098-61230117 None:intergenic 30.0%
!! TATTTGATGGTGTCAACTTT+GGG - chr2_4:61230177-61230196 Msa0339970:intron 30.0%
GATCAAAGCAGATTAAAACA+TGG + chr2_4:61230250-61230269 None:intergenic 30.0%
AAAACATTGTAGCAAGAGTT+TGG + chr2_4:61230498-61230517 None:intergenic 30.0%
TCAATGAACTATTATGATGC+AGG - chr2_4:61230812-61230831 Msa0339970:intron 30.0%
ATTGTGGTTCACATTAGTAA+AGG - chr2_4:61230934-61230953 Msa0339970:intron 30.0%
TTGTGGTTCACATTAGTAAA+GGG - chr2_4:61230935-61230954 Msa0339970:intron 30.0%
CATTTGAAAAGAATAGGCAT+TGG - chr2_4:61230994-61231013 Msa0339970:intron 30.0%
ATGATTGTGATATCTTGTTG+AGG - chr2_4:61231024-61231043 Msa0339970:intron 30.0%
TATTAGATAGATACACTTGG+AGG + chr2_4:61231096-61231115 None:intergenic 30.0%
GAGTATTAGATAGATACACT+TGG + chr2_4:61231099-61231118 None:intergenic 30.0%
CATGAAATATGGGATCAAAA+AGG - chr2_4:61231126-61231145 Msa0339970:five_prime_UTR 30.0%
TCTGCAATCTGAAAGAAGAA+AGG + chr2_4:61226794-61226813 None:intergenic 35.0%
AGGACTCAACTGAAATTAAC+AGG + chr2_4:61226833-61226852 None:intergenic 35.0%
CTAGCTATGAAATCAATGGA+AGG + chr2_4:61226853-61226872 None:intergenic 35.0%
CATCAACTTAACAACAGTGA+TGG + chr2_4:61227025-61227044 None:intergenic 35.0%
! AAGTGCCAATTCACTGTTTT+AGG + chr2_4:61227251-61227270 None:intergenic 35.0%
ACCTATTTGCACTTTCTTCA+AGG - chr2_4:61227323-61227342 Msa0339970:intron 35.0%
! TCCTTGAAGAAAGTGCAAAT+AGG + chr2_4:61227327-61227346 None:intergenic 35.0%
! AATACTAGTCTGCAGTAAGA+AGG + chr2_4:61227576-61227595 None:intergenic 35.0%
TATAGCATCATTGGTCGATA+CGG - chr2_4:61227668-61227687 Msa0339970:intron 35.0%
!!! GCTATGTCTATCGACTTTTT+TGG + chr2_4:61227784-61227803 None:intergenic 35.0%
TGTTGATCCAACTCGAAAAA+TGG - chr2_4:61227943-61227962 Msa0339970:CDS 35.0%
!!! CTTCTATCCATTTTTCGAGT+TGG + chr2_4:61227953-61227972 None:intergenic 35.0%
TGTTATAACGCATCAAGTGT+TGG - chr2_4:61228020-61228039 Msa0339970:intron 35.0%
! TGGATATTATTGGTCTCTAC+AGG - chr2_4:61228040-61228059 Msa0339970:intron 35.0%
TGCTTGATTGAATAGAGCTA+TGG + chr2_4:61228095-61228114 None:intergenic 35.0%
CTCTATTCAATCAAGCATCA+AGG - chr2_4:61228098-61228117 Msa0339970:intron 35.0%
! AGAAGAATGGTACTTTTCTG+CGG + chr2_4:61228265-61228284 None:intergenic 35.0%
CTATCAGGAAAGTAGAAGAA+TGG + chr2_4:61228278-61228297 None:intergenic 35.0%
! TGTGTTGACAAACTCAGATT+CGG - chr2_4:61228360-61228379 Msa0339970:CDS 35.0%
!!! CTATATTTTGGAGGTATCCT+TGG - chr2_4:61228454-61228473 Msa0339970:intron 35.0%
ACTCCCATGAAGTTCAATAA+AGG + chr2_4:61228517-61228536 None:intergenic 35.0%
GGTCGAATCATTAAAGATGT+AGG + chr2_4:61228622-61228641 None:intergenic 35.0%
TTAATGATTCGACCTCGTAT+CGG - chr2_4:61228628-61228647 Msa0339970:intron 35.0%
! AATTTCAAGTACTGCATTGC+AGG + chr2_4:61228711-61228730 None:intergenic 35.0%
AAAACTCCTTTATATGCCAC+TGG - chr2_4:61228804-61228823 Msa0339970:intron 35.0%
TACATACCAGTGGCATATAA+AGG + chr2_4:61228813-61228832 None:intergenic 35.0%
!! GTATGTTTGTTGTAATCCAG+TGG - chr2_4:61228883-61228902 Msa0339970:intron 35.0%
CTGAGATATAACATGTGCAA+TGG + chr2_4:61228981-61229000 None:intergenic 35.0%
AATTGCAGATGTTTGATGCT+TGG + chr2_4:61229211-61229230 None:intergenic 35.0%
!! TTCGATCGATTTGCCAAAAA+TGG - chr2_4:61229229-61229248 Msa0339970:intron 35.0%
! TCGATTTGCCAAAAATGGTA+AGG - chr2_4:61229234-61229253 Msa0339970:intron 35.0%
CGATTTGCCAAAAATGGTAA+GGG - chr2_4:61229235-61229254 Msa0339970:intron 35.0%
! CAGCAGAGATATATTTTCTG+GGG - chr2_4:61229304-61229323 Msa0339970:intron 35.0%
! CACTCCTTTTACGTTCAAAT+CGG - chr2_4:61229409-61229428 Msa0339970:CDS 35.0%
CCTGCATGACAATAATGAAA+TGG + chr2_4:61229456-61229475 None:intergenic 35.0%
CCATTTCATTATTGTCATGC+AGG - chr2_4:61229453-61229472 Msa0339970:CDS 35.0%
CTTCCGAAAAAACATCATCT+TGG - chr2_4:61229695-61229714 Msa0339970:CDS 35.0%
TGCTAACAAGGACTATGAAA+AGG - chr2_4:61229744-61229763 Msa0339970:CDS 35.0%
! ATCGCTGGTCCTTTTTAATA+AGG - chr2_4:61229819-61229838 Msa0339970:CDS 35.0%
TTCAAAAAGCAATTAGCGAG+CGG + chr2_4:61229855-61229874 None:intergenic 35.0%
TAATATAATGCAGATGGGCA+TGG - chr2_4:61229909-61229928 Msa0339970:intron 35.0%
CTGAACACGAATAAATTACC+GGG + chr2_4:61230038-61230057 None:intergenic 35.0%
ATTCGTGTTCAGATTTGGAA+AGG - chr2_4:61230046-61230065 Msa0339970:intron 35.0%
! TGTTTGGCCTTTGTATTTGA+TGG - chr2_4:61230164-61230183 Msa0339970:intron 35.0%
GTTGACACCATCAAATACAA+AGG + chr2_4:61230174-61230193 None:intergenic 35.0%
!! GTATTTGATGGTGTCAACTT+TGG - chr2_4:61230176-61230195 Msa0339970:intron 35.0%
!! ATTTGATGGTGTCAACTTTG+GGG - chr2_4:61230178-61230197 Msa0339970:intron 35.0%
ATGGATGAAGTTACATACCA+TGG + chr2_4:61230231-61230250 None:intergenic 35.0%
!! TTTATTTTCAGCCTTCTCCA+TGG - chr2_4:61230271-61230290 Msa0339970:CDS 35.0%
TGTTTGTGTTAGCGCTTTAT+AGG - chr2_4:61230463-61230482 Msa0339970:intron 35.0%
ATGAAGTTAACGACGATTAG+TGG - chr2_4:61230537-61230556 Msa0339970:intron 35.0%
TCATGTCATTCTTCATTCTC+AGG - chr2_4:61230570-61230589 Msa0339970:CDS 35.0%
TCTTCATTCTCAGGTTATAG+TGG - chr2_4:61230579-61230598 Msa0339970:CDS 35.0%
!!! CTACTTATTTTGTCATCTGC+TGG - chr2_4:61230622-61230641 Msa0339970:CDS 35.0%
!! TGGTGGATTCATTGGAATTT+GGG - chr2_4:61230642-61230661 Msa0339970:intron 35.0%
GAACTATTATGATGCAGGAT+TGG - chr2_4:61230817-61230836 Msa0339970:intron 35.0%
! GATTATGTATTGATGTTGCC+AGG + chr2_4:61230889-61230908 None:intergenic 35.0%
!! CTATACATCTTCTAAAGCTG+AGG + chr2_4:61231067-61231086 None:intergenic 35.0%
GCCCCACATTAACATATTTG+TGG - chr2_4:61226633-61226652 Msa0339970:three_prime_UTR 40.0%
! GGACTTGTTTGAGACGAAAA+AGG + chr2_4:61226662-61226681 None:intergenic 40.0%
! GTATCGACCAATGATGCTAT+AGG + chr2_4:61227669-61227688 None:intergenic 40.0%
CATACCTAATTGGCCAATGA+AGG + chr2_4:61227694-61227713 None:intergenic 40.0%
CTCAAATCTTGTGCATGTGT+TGG + chr2_4:61227843-61227862 None:intergenic 40.0%
TATCCATTCACTTGTGAGAC+AGG + chr2_4:61227875-61227894 None:intergenic 40.0%
! AAGTTGTGACACTGACTAGT+GGG + chr2_4:61228135-61228154 None:intergenic 40.0%
! CAGTGTCACAACTTCTTTTG+TGG - chr2_4:61228141-61228160 Msa0339970:CDS 40.0%
! AACTCTTTGGTTTCAGCATC+CGG + chr2_4:61228238-61228257 None:intergenic 40.0%
TTTCTGCGGTAAGAACTCTT+TGG + chr2_4:61228251-61228270 None:intergenic 40.0%
! GGTTTTCCTGTTGAGAAACA+AGG + chr2_4:61228310-61228329 None:intergenic 40.0%
!! AGGTTGATGGAAGTAAGAGA+AGG - chr2_4:61228407-61228426 Msa0339970:CDS 40.0%
TCTTCTTTCATTAGCGATGC+AGG - chr2_4:61228755-61228774 Msa0339970:intron 40.0%
CTTCTTTCATTAGCGATGCA+GGG - chr2_4:61228756-61228775 Msa0339970:intron 40.0%
TACTTTCAGCTATACTCCTG+TGG - chr2_4:61229155-61229174 Msa0339970:CDS 40.0%
CTTGTTTGTTCAAACTCCAC+AGG + chr2_4:61229174-61229193 None:intergenic 40.0%
TGAACGTAAAAGGAGTGACA+TGG + chr2_4:61229406-61229425 None:intergenic 40.0%
TTCAAGTCTGTCTGCAAGTT+TGG - chr2_4:61229571-61229590 Msa0339970:intron 40.0%
TGTAGAACACCTGCAATACT+CGG + chr2_4:61229786-61229805 None:intergenic 40.0%
TTGGCACTTGCATTCATTCT+TGG - chr2_4:61229940-61229959 Msa0339970:intron 40.0%
CTTGCATTCATTCTTGGAAC+AGG - chr2_4:61229946-61229965 Msa0339970:intron 40.0%
TCCTACACCTCATTAGAGTT+GGG - chr2_4:61230010-61230029 Msa0339970:intron 40.0%
TACAAAGGCCAAACAGTTCA+GGG + chr2_4:61230159-61230178 None:intergenic 40.0%
ATACAAAGGCCAAACAGTTC+AGG + chr2_4:61230160-61230179 None:intergenic 40.0%
GAAGTTACATACCATGGAGA+AGG + chr2_4:61230225-61230244 None:intergenic 40.0%
ATATAGACTCTCCATGGAGA+AGG + chr2_4:61230285-61230304 None:intergenic 40.0%
!!! CTTATTTTGTCATCTGCTGG+TGG - chr2_4:61230625-61230644 Msa0339970:exon 40.0%
!! CTGGTGGATTCATTGGAATT+TGG - chr2_4:61230641-61230660 Msa0339970:exon 40.0%
ATGAGTTTAAGAGCCTTTGC+TGG - chr2_4:61230682-61230701 Msa0339970:intron 40.0%
TCCAAGACACTTGCAACATT+TGG - chr2_4:61230774-61230793 Msa0339970:intron 40.0%
TCCAAATGTTGCAAGTGTCT+TGG + chr2_4:61230778-61230797 None:intergenic 40.0%
TTATGATGCAGGATTGGAAC+TGG - chr2_4:61230823-61230842 Msa0339970:intron 40.0%
TATGATGCAGGATTGGAACT+GGG - chr2_4:61230824-61230843 Msa0339970:intron 40.0%
ATTTGGCCACAGTTTGATTG+TGG - chr2_4:61230918-61230937 Msa0339970:intron 40.0%
TGTGAACCACAATCAAACTG+TGG + chr2_4:61230927-61230946 None:intergenic 40.0%
GTGATATCTTGTTGAGGCAT+CGG - chr2_4:61231030-61231049 Msa0339970:intron 40.0%
GTGAATTGGCACTTCAGAGA+TGG - chr2_4:61227257-61227276 Msa0339970:CDS 45.0%
GCACTTTCTTCAAGGATGCT+AGG - chr2_4:61227331-61227350 Msa0339970:intron 45.0%
GGCTGATCCTATAGCATCAT+TGG - chr2_4:61227659-61227678 Msa0339970:intron 45.0%
AAGCCTGTCTCACAAGTGAA+TGG - chr2_4:61227869-61227888 Msa0339970:intron 45.0%
! GAAGTTGTGACACTGACTAG+TGG + chr2_4:61228136-61228155 None:intergenic 45.0%
! CACAACTTCTTTTGTGGCTG+AGG - chr2_4:61228147-61228166 Msa0339970:CDS 45.0%
TCCTGTTGAGAAACAAGGCT+TGG + chr2_4:61228305-61228324 None:intergenic 45.0%
! GCTTCGTCAGCGCTATATTT+TGG - chr2_4:61228442-61228461 Msa0339970:intron 45.0%
!! TCGTCAGCGCTATATTTTGG+AGG - chr2_4:61228445-61228464 Msa0339970:intron 45.0%
CAGAAATAAGCAACGTTGCC+TGG + chr2_4:61228486-61228505 None:intergenic 45.0%
TGCATTGCAGGATGTAGCAT+AGG + chr2_4:61228699-61228718 None:intergenic 45.0%
GCTAATGAAAGAAGAACCGC+AGG + chr2_4:61228750-61228769 None:intergenic 45.0%
!! GTTTGTTGTAATCCAGTGGC+AGG - chr2_4:61228887-61228906 Msa0339970:intron 45.0%
TGCAGATGTTTGATGCTTGG+AGG + chr2_4:61229208-61229227 None:intergenic 45.0%
ACGTAAAAGGAGTGACATGG+AGG + chr2_4:61229403-61229422 None:intergenic 45.0%
ACAGACTTGAAATGCAGCCA+TGG + chr2_4:61229562-61229581 None:intergenic 45.0%
AGTCTGTCTGCAAGTTTGGT+TGG - chr2_4:61229575-61229594 Msa0339970:intron 45.0%
CATATCATATCTCACCTGCC+CGG + chr2_4:61229634-61229653 None:intergenic 45.0%
! TGCAGGTGCATTTGCTAACA+AGG - chr2_4:61229732-61229751 Msa0339970:CDS 45.0%
GTAGAACACCTGCAATACTC+GGG + chr2_4:61229785-61229804 None:intergenic 45.0%
CTTGGAACAGGATTGCACTT+TGG - chr2_4:61229958-61229977 Msa0339970:intron 45.0%
GTCCTACACCTCATTAGAGT+TGG - chr2_4:61230009-61230028 Msa0339970:intron 45.0%
CCTACACCTCATTAGAGTTG+GGG - chr2_4:61230011-61230030 Msa0339970:intron 45.0%
GTTGAGTGAGTGCTACAAAC+TGG + chr2_4:61230136-61230155 None:intergenic 45.0%
ACAAAGGCCAAACAGTTCAG+GGG + chr2_4:61230158-61230177 None:intergenic 45.0%
TGCATATTCAGCCTTCTCCA+TGG - chr2_4:61230211-61230230 Msa0339970:CDS 45.0%
GCTAACACAAACACAGACAC+TGG + chr2_4:61230456-61230475 None:intergenic 45.0%
!! TCATCTGCTGGTGGATTCAT+TGG - chr2_4:61230634-61230653 Msa0339970:exon 45.0%
TTACCTCAAGAAGCCAGCAA+AGG + chr2_4:61230698-61230717 None:intergenic 45.0%
TAGCTCCTAAGGAATTCCCA+TGG + chr2_4:61230856-61230875 None:intergenic 45.0%
AATTGCTTTGCCCGCTGCAA+TGG - chr2_4:61227629-61227648 Msa0339970:intron 50.0%
TTGGTCGATACGGCCTTCAT+TGG - chr2_4:61227678-61227697 Msa0339970:intron 50.0%
ACGGCCTTCATTGGCCAATT+AGG - chr2_4:61227687-61227706 Msa0339970:CDS 50.0%
! ATTGGTCTCTACAGGTCCAG+TGG - chr2_4:61228048-61228067 Msa0339970:intron 50.0%
AGCTCACAGGTAGAGGAGAA+TGG - chr2_4:61228190-61228209 Msa0339970:intron 50.0%
GGTAGAGGAGAATGGATGCT+TGG - chr2_4:61228198-61228217 Msa0339970:intron 50.0%
! TCTTTGGTTTCAGCATCCGG+AGG + chr2_4:61228235-61228254 None:intergenic 50.0%
ACAAGGCTTGGCAGACTATC+AGG + chr2_4:61228293-61228312 None:intergenic 50.0%
!! GCCAAGCCTTGTTTCTCAAC+AGG - chr2_4:61228301-61228320 Msa0339970:CDS 50.0%
!! TATAGCGCTGACGAAGCTGA+AGG + chr2_4:61228439-61228458 None:intergenic 50.0%
! AATCATCGTGTGCCGATACG+AGG + chr2_4:61228643-61228662 None:intergenic 50.0%
TGTCGACGCATACATACCAG+TGG + chr2_4:61228823-61228842 None:intergenic 50.0%
TTCGTCAAATCTCCTGCCAC+TGG + chr2_4:61228902-61228921 None:intergenic 50.0%
GTATTCCGCATGGGTGTCAA+CGG - chr2_4:61228950-61228969 Msa0339970:CDS 50.0%
GGTAACATTCTGCGTGACAC+TGG - chr2_4:61229503-61229522 Msa0339970:CDS 50.0%
GCATCATTAGCTGCACACCA+CGG - chr2_4:61229528-61229547 Msa0339970:intron 50.0%
ACACCACGGATCAACATCCA+TGG - chr2_4:61229542-61229561 Msa0339970:intron 50.0%
TGGTTTCAGGCGATTCTTGC+AGG - chr2_4:61229715-61229734 Msa0339970:CDS 50.0%
TACTCGGGTAGCAGTTGTTG+AGG + chr2_4:61229770-61229789 None:intergenic 50.0%
! AACTGCTACCCGAGTATTGC+AGG - chr2_4:61229774-61229793 Msa0339970:CDS 50.0%
ATGCAGATGGGCATGGTTCT+TGG - chr2_4:61229916-61229935 Msa0339970:intron 50.0%
GATGGGCATGGTTCTTGGAT+TGG - chr2_4:61229921-61229940 Msa0339970:intron 50.0%
CCCCAACTCTAATGAGGTGT+AGG + chr2_4:61230014-61230033 None:intergenic 50.0%
CACTCAACCCCTGAACTGTT+TGG - chr2_4:61230148-61230167 Msa0339970:intron 50.0%
CAGGACCATGGGAATTCCTT+AGG - chr2_4:61230848-61230867 Msa0339970:intron 50.0%
AGCCGTCAAAGCCATTGCAG+CGG + chr2_4:61227643-61227662 None:intergenic 55.0%
CTGTGAGCTTGCGTCGCTTA+AGG + chr2_4:61228179-61228198 None:intergenic 55.0%
CTTAAGCGACGCAAGCTCAC+AGG - chr2_4:61228177-61228196 Msa0339970:intron 55.0%
TAAGCAACGTTGCCTGGACG+AGG + chr2_4:61228480-61228499 None:intergenic 55.0%
!! GAGATCTCTTGGTGCTCCTG+CGG - chr2_4:61228731-61228750 Msa0339970:CDS 55.0%
! GCGATGCAGGGAGTTTTTCG+AGG - chr2_4:61228768-61228787 Msa0339970:intron 55.0%
CAGCCATGGATGTTGATCCG+TGG + chr2_4:61229548-61229567 None:intergenic 55.0%
GTTGGCAGTGTCCCTTCTTG+CGG - chr2_4:61229593-61229612 Msa0339970:intron 55.0%
AGCCAGACCATCCGCAAGAA+GGG + chr2_4:61229607-61229626 None:intergenic 55.0%
CCTCATTAGAGTTGGGGTCC+CGG - chr2_4:61230017-61230036 Msa0339970:intron 55.0%
!! GAGCCTTTGCTGGCTTCTTG+AGG - chr2_4:61230692-61230711 Msa0339970:intron 55.0%
TGCAGGATTGGAACTGGGTC+AGG - chr2_4:61230829-61230848 Msa0339970:intron 55.0%
TTGGAACTGGGTCAGGACCA+TGG - chr2_4:61230836-61230855 Msa0339970:intron 55.0%
TGGAACTGGGTCAGGACCAT+GGG - chr2_4:61230837-61230856 Msa0339970:intron 55.0%
GCTAGCGCACTTAGCTCCTA+AGG + chr2_4:61230867-61230886 None:intergenic 55.0%
!! GCCCGCTGCAATGGCTTTGA+CGG - chr2_4:61227638-61227657 Msa0339970:intron 60.0%
GCCGTCAAAGCCATTGCAGC+GGG + chr2_4:61227642-61227661 None:intergenic 60.0%
CCTACTGCAGCAAGCTCCAC+TGG + chr2_4:61228067-61228086 None:intergenic 60.0%
!! CCAGTGGAGCTTGCTGCAGT+AGG - chr2_4:61228064-61228083 Msa0339970:intron 60.0%
CGACGCAAGCTCACAGGTAG+AGG - chr2_4:61228183-61228202 Msa0339970:intron 60.0%
CTTGGAAGCTGCGACACCTC+CGG - chr2_4:61228216-61228235 Msa0339970:intron 60.0%
AGGTATCCTTGGCCTCGTCC+AGG - chr2_4:61228465-61228484 Msa0339970:intron 60.0%
CTGCACCGTTGACACCCATG+CGG + chr2_4:61228958-61228977 None:intergenic 60.0%
GCAGTGTCCCTTCTTGCGGA+TGG - chr2_4:61229597-61229616 Msa0339970:intron 60.0%
GTCCCTTCTTGCGGATGGTC+TGG - chr2_4:61229602-61229621 Msa0339970:intron 60.0%
CAGCCAGACCATCCGCAAGA+AGG + chr2_4:61229608-61229627 None:intergenic 60.0%
CCGGGACCCCAACTCTAATG+AGG + chr2_4:61230020-61230039 None:intergenic 60.0%
AGGAGCTAAGTGCGCTAGCC+TGG - chr2_4:61230868-61230887 Msa0339970:intron 60.0%
ACGTTGCCTGGACGAGGCCA+AGG + chr2_4:61228474-61228493 None:intergenic 65.0%
GCGGATGGTCTGGCTGTTGC+CGG - chr2_4:61229612-61229631 Msa0339970:intron 65.0%
CGGATGGTCTGGCTGTTGCC+GGG - chr2_4:61229613-61229632 Msa0339970:intron 65.0%
TGGTCTGGCTGTTGCCGGGC+AGG - chr2_4:61229617-61229636 Msa0339970:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 61226617 61231301 61226617 ID=Msa0339970;Name=Msa0339970
chr2_4 mRNA 61226617 61231301 61226617 ID=Msa0339970-mRNA-1;Parent=Msa0339970;Name=Msa0339970-mRNA-1;_AED=0.19;_eAED=0.19;_QI=245|1|1|1|0.92|0.85|14|425|507
chr2_4 exon 61226617 61227084 61226617 ID=Msa0339970-mRNA-1:exon:19196;Parent=Msa0339970-mRNA-1
chr2_4 exon 61227205 61227326 61227205 ID=Msa0339970-mRNA-1:exon:19195;Parent=Msa0339970-mRNA-1
chr2_4 exon 61227686 61227781 61227686 ID=Msa0339970-mRNA-1:exon:19194;Parent=Msa0339970-mRNA-1
chr2_4 exon 61227880 61227996 61227880 ID=Msa0339970-mRNA-1:exon:19193;Parent=Msa0339970-mRNA-1
chr2_4 exon 61228123 61228194 61228123 ID=Msa0339970-mRNA-1:exon:19192;Parent=Msa0339970-mRNA-1
chr2_4 exon 61228280 61228443 61228280 ID=Msa0339970-mRNA-1:exon:19191;Parent=Msa0339970-mRNA-1
chr2_4 exon 61228668 61228768 61228668 ID=Msa0339970-mRNA-1:exon:19190;Parent=Msa0339970-mRNA-1
chr2_4 exon 61228919 61229015 61228919 ID=Msa0339970-mRNA-1:exon:19189;Parent=Msa0339970-mRNA-1
chr2_4 exon 61229093 61229228 61229093 ID=Msa0339970-mRNA-1:exon:19188;Parent=Msa0339970-mRNA-1
chr2_4 exon 61229375 61229541 61229375 ID=Msa0339970-mRNA-1:exon:19187;Parent=Msa0339970-mRNA-1
chr2_4 exon 61229647 61229856 61229647 ID=Msa0339970-mRNA-1:exon:19186;Parent=Msa0339970-mRNA-1
chr2_4 exon 61230210 61230331 61230210 ID=Msa0339970-mRNA-1:exon:19185;Parent=Msa0339970-mRNA-1
chr2_4 exon 61230566 61230660 61230566 ID=Msa0339970-mRNA-1:exon:19184;Parent=Msa0339970-mRNA-1
chr2_4 exon 61231075 61231301 61231075 ID=Msa0339970-mRNA-1:exon:19183;Parent=Msa0339970-mRNA-1
chr2_4 five_prime_UTR 61231075 61231301 61231075 ID=Msa0339970-mRNA-1:five_prime_utr;Parent=Msa0339970-mRNA-1
chr2_4 five_prime_UTR 61230643 61230660 61230643 ID=Msa0339970-mRNA-1:five_prime_utr;Parent=Msa0339970-mRNA-1
chr2_4 CDS 61230566 61230642 61230566 ID=Msa0339970-mRNA-1:cds;Parent=Msa0339970-mRNA-1
chr2_4 CDS 61230210 61230331 61230210 ID=Msa0339970-mRNA-1:cds;Parent=Msa0339970-mRNA-1
chr2_4 CDS 61229647 61229856 61229647 ID=Msa0339970-mRNA-1:cds;Parent=Msa0339970-mRNA-1
chr2_4 CDS 61229375 61229541 61229375 ID=Msa0339970-mRNA-1:cds;Parent=Msa0339970-mRNA-1
chr2_4 CDS 61229093 61229228 61229093 ID=Msa0339970-mRNA-1:cds;Parent=Msa0339970-mRNA-1
chr2_4 CDS 61228919 61229015 61228919 ID=Msa0339970-mRNA-1:cds;Parent=Msa0339970-mRNA-1
chr2_4 CDS 61228668 61228768 61228668 ID=Msa0339970-mRNA-1:cds;Parent=Msa0339970-mRNA-1
chr2_4 CDS 61228280 61228443 61228280 ID=Msa0339970-mRNA-1:cds;Parent=Msa0339970-mRNA-1
chr2_4 CDS 61228123 61228194 61228123 ID=Msa0339970-mRNA-1:cds;Parent=Msa0339970-mRNA-1
chr2_4 CDS 61227880 61227996 61227880 ID=Msa0339970-mRNA-1:cds;Parent=Msa0339970-mRNA-1
chr2_4 CDS 61227686 61227781 61227686 ID=Msa0339970-mRNA-1:cds;Parent=Msa0339970-mRNA-1
chr2_4 CDS 61227205 61227326 61227205 ID=Msa0339970-mRNA-1:cds;Parent=Msa0339970-mRNA-1
chr2_4 CDS 61227042 61227084 61227042 ID=Msa0339970-mRNA-1:cds;Parent=Msa0339970-mRNA-1
chr2_4 three_prime_UTR 61226617 61227041 61226617 ID=Msa0339970-mRNA-1:three_prime_utr;Parent=Msa0339970-mRNA-1
Gene Sequence

>Msa0339970

ATGGCAGAGAAAGAGAGTTTGTTTTCTATAGGTGATTGGATGAGAATACCTATTTGCACTTTCTTCAAGGATGCTAGACTAGTATTTAAATTAGACGATCTTGGTCGCGAAATATTGTCAATTGCTTTGCCCGCTGCAATGGCTTTGACGGCTGATCCTATAGCATCATTGGTCGATACGGCCTTCATTGGCCAATTAGGTCCAGTGGAGCTTGCTGCAGTAGGAGTTTCCATAGCTCTATTCAATCAAGCATCAAGGATCTTTATATTCCCACTAGTCAGTGTCACAACTTCTTTTGTGGCTGAGGAAGATGCCTTAAGCGACGCAAGCTCACAGGTAGAGGAGAATGGATGCTTGGAAGCTGCGACACCTCCGGATGCTGAAACCAAAGAGTTCTTACCGCAGAAAAATTCGGTAGTTGAAAGCTTTAATGTAGTTAAGGTTGATGGAAGTAAGAGAAGGCAAATTCCTTCAGCTTCGTCAGCGCTATATTTTGGAGGTATCCTTGGCCTCGTCCAGGCAACGTTGCTTATTTCTGCAGCAAAACCTTTATTGAACTTCATGGGAGTGACTTCTGATTCTCCTATGCTACATCCTGCAATGCAGTACTTGAAATTGAGATCTCTTGGTGCTCCTGCGGTTCTTCTTTCATTAGCGATGCAGGGAGTTTTTCGAGGATTTAAAGACACTAAAACTCCTTTATATGCCACTGTGGCAGGAGATTTGACGAATATAGCACTAGATCCGCTTTTCATTTTTGTATTCCGCATGGGTGTCAACGGTGCAGCCATTGCACATGTTATATCTCAGTATCTACTTTCAGCTATACTCCTGTGGAGTTTGAACAAACAAGTTGATCTTATACCTCCAAGCATCAAACATCTGCAATTCGATCGATTTGCCAAAAATGGTTTTCTATTATTCATGAGAGTCATTGCGGTAACATTCTGCGTGACACTGGCTGCATCATTAGCTGCACACCACGGATCAACATCCATGGCTGCATTTCAAGTCTGTCTGCAAGTTTGGTTGGCAGTGTCCCTTCTTGCGGATGGTCTGGCTGTTGCCGGGCAGGCGATTCTTGCAGGTGCATTTGCTAACAAGGACTATGAAAAGGCCTCAACAACTGCTACCCGAGTATTGCAGATGGGCATGGTTCTTGGATTGGCACTTGCATTCATTCTTGGAACAGGATTGCACTTTGGAGCTAAACTATTTACAAAAGATGATGATGTCCTACACCTCATTAGAGTTGGGGTCCCGTTTGTAGCACTCACTCAACCCCTGAACTGTTTGGCCTTTGTATTTGATGGTGTCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTCTCCATGGTTATAGTGGCAATTATTAGCATAATTTGTCTACTTATTTTGTCATCTGCTGGTGGATTCATTGGAATTTGGGTTGCATTGACAATCTATATGAGTTTAAGAGCCTTTGCTGGCTTCTTGAGGATTGGAACTGGGTCAGGACCATGGGAATTCCTTAGGAGCTAA

Protein sequence

>Msa0339970

MAEKESLFSIGDWMRIPICTFFKDARLVFKLDDLGREILSIALPAAMALTADPIASLVDTAFIGQLGPVELAAVGVSIALFNQASRIFIFPLVSVTTSFVAEEDALSDASSQVEENGCLEAATPPDAETKEFLPQKNSVVESFNVVKVDGSKRRQIPSASSALYFGGILGLVQATLLISAAKPLLNFMGVTSDSPMLHPAMQYLKLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDLTNIALDPLFIFVFRMGVNGAAIAHVISQYLLSAILLWSLNKQVDLIPPSIKHLQFDRFAKNGFLLFMRVIAVTFCVTLAASLAAHHGSTSMAAFQVCLQVWLAVSLLADGLAVAGQAILAGAFANKDYEKASTTATRVLQMGMVLGLALAFILGTGLHFGAKLFTKDDDVLHLIRVGVPFVALTQPLNCLAFVFDGVNFGASDFAYSAFSMVIVAIISIICLLILSSAGGFIGIWVALTIYMSLRAFAGFLRIGTGSGPWEFLRS*