AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0947880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0947880 MtrunA17_Chr6g0462581 99.237 262 2 0 1 262 552 813 0.0 537
Msa0947880 MtrunA17_Chr5g0397121 80.755 265 47 3 1 262 565 828 4.89e-146 429
Msa0947880 MtrunA17_Chr8g0387641 74.545 275 57 4 1 262 573 847 3.03e-141 417
Msa0947880 MtrunA17_Chr1g0202381 72.830 265 69 2 1 262 521 785 1.27e-126 377
Msa0947880 MtrunA17_Chr1g0202371 73.208 265 67 3 1 262 450 713 1.61e-123 367
Msa0947880 MtrunA17_Chr1g0204031 69.811 265 77 3 1 262 610 874 2.04e-120 363
Msa0947880 MtrunA17_Chr1g0195741 58.271 266 94 3 1 262 991 1243 7.92e-102 322
Msa0947880 MtrunA17_Chr1g0195731 58.555 263 98 3 1 262 987 1239 6.69e-101 319
Msa0947880 MtrunA17_Chr3g0116131 56.604 265 100 3 1 262 955 1207 1.86e-93 298
Msa0947880 MtrunA17_Chr4g0038101 52.874 261 101 2 1 260 774 1013 1.44e-90 288
Msa0947880 MtrunA17_Chr3g0127431 49.749 199 98 2 1 198 137 334 5.21e-61 197
Msa0947880 MtrunA17_Chr3g0127401 45.726 234 96 5 1 228 134 342 4.65e-60 194
Msa0947880 MtrunA17_Chr6g0459561 40.476 252 120 5 1 248 433 658 4.79e-53 182
Msa0947880 MtrunA17_Chr6g0459541 36.232 276 123 7 1 248 93 343 5.63e-48 162
Msa0947880 MtrunA17_Chr4g0004121 41.837 196 107 2 1 189 293 488 1.99e-45 159
Msa0947880 MtrunA17_Chr7g0246111 45.455 176 93 2 1 174 263 437 1.01e-44 157
Msa0947880 MtrunA17_Chr4g0052271 44.693 179 96 3 1 177 170 347 2.20e-44 154
Msa0947880 MtrunA17_Chr2g0321241 47.159 176 86 4 2 173 184 356 5.53e-44 154
Msa0947880 MtrunA17_Chr4g0026631 47.727 176 85 4 2 173 179 351 1.39e-43 152
Msa0947880 MtrunA17_Chr1g0204051 78.667 75 16 0 78 152 1 75 3.05e-39 131
Msa0947880 MtrunA17_Chr6g0459531 42.857 182 98 4 23 201 114 292 1.73e-36 131
Msa0947880 MtrunA17_Chr6g0459551 36.515 241 115 5 1 209 153 387 3.05e-36 133
Msa0947880 MtrunA17_Chr2g0327121 38.119 202 116 6 1 197 532 729 3.43e-34 130
Msa0947880 MtrunA17_Chr2g0327121 36.893 206 119 6 1 202 259 457 1.68e-29 117
Msa0947880 MtrunA17_Chr1g0180791 32.411 253 158 7 1 248 530 774 1.13e-33 129
Msa0947880 MtrunA17_Chr1g0180791 37.379 206 118 6 1 202 257 455 1.11e-30 120
Msa0947880 MtrunA17_Chr7g0264521 33.202 253 155 7 1 248 531 774 1.38e-33 128
Msa0947880 MtrunA17_Chr7g0264521 36.098 205 122 5 1 202 258 456 2.40e-30 119
Msa0947880 MtrunA17_Chr7g0255641 36.723 177 106 4 1 173 710 884 5.17e-31 121
Msa0947880 MtrunA17_Chr7g0255641 30.418 263 142 11 2 258 446 673 4.15e-24 101
Msa0947880 MtrunA17_Chr7g0255721 37.288 177 105 4 1 173 737 911 7.48e-31 120
Msa0947880 MtrunA17_Chr7g0255721 29.885 261 166 8 2 249 437 693 1.22e-25 105
Msa0947880 MtrunA17_Chr3g0135761 41.860 172 94 4 1 169 273 441 4.05e-30 118
Msa0947880 MtrunA17_Chr8g0362771 40.698 172 97 3 1 169 288 457 2.23e-29 116
Msa0947880 MtrunA17_Chr3g0135721 40.116 172 97 4 1 169 275 443 3.87e-29 115
Msa0947880 MtrunA17_Chr7g0248361 37.778 180 102 5 1 172 243 420 1.10e-28 114
Msa0947880 MtrunA17_Chr6g0456351 39.521 167 93 4 1 162 368 531 6.93e-28 112
Msa0947880 MtrunA17_Chr3g0143721 36.598 194 112 6 1 185 300 491 3.30e-27 110
Msa0947880 MtrunA17_Chr5g0432631 38.068 176 103 4 1 173 280 452 8.89e-27 108
Msa0947880 MtrunA17_Chr7g0255901 31.349 252 141 10 1 246 690 915 9.68e-27 108
Msa0947880 MtrunA17_Chr3g0145011 34.597 211 121 7 1 197 191 398 1.25e-26 107
Msa0947880 MtrunA17_Chr7g0217421 39.674 184 102 6 1 179 90 269 1.69e-26 106
Msa0947880 MtrunA17_Chr5g0429571 40.000 175 95 4 1 167 364 536 2.20e-26 107
Msa0947880 MtrunA17_Chr3g0141901 33.971 209 126 6 1 200 188 393 2.93e-26 105
Msa0947880 MtrunA17_Chr3g0094871 35.754 179 106 4 1 172 62 238 4.94e-26 105
Msa0947880 MtrunA17_Chr1g0158881 39.535 172 97 4 1 169 380 547 7.63e-26 106
Msa0947880 MtrunA17_Chr4g0052411 40.116 172 96 5 1 167 280 449 1.77e-25 105
Msa0947880 MtrunA17_Chr4g0031821 35.429 175 103 5 1 167 371 543 2.12e-25 105
Msa0947880 MtrunA17_Chr2g0277831 32.046 259 151 8 2 248 295 540 3.68e-25 104
Msa0947880 MtrunA17_Chr2g0277831 36.905 168 96 6 1 162 585 748 4.37e-25 103
Msa0947880 MtrunA17_Chr3g0104211 39.560 182 98 5 1 173 355 533 4.02e-25 104
Msa0947880 MtrunA17_Chr7g0260601 36.000 175 102 5 1 167 291 463 4.69e-25 103
Msa0947880 MtrunA17_Chr6g0476861 34.286 175 105 4 1 167 248 420 5.28e-25 103
Msa0947880 MtrunA17_Chr7g0255651 36.957 184 109 4 2 180 335 516 6.36e-25 103
Msa0947880 MtrunA17_Chr2g0297281 40.116 172 96 5 1 167 337 506 2.05e-24 102
Msa0947880 MtrunA17_Chr5g0432641 38.068 176 103 4 1 173 242 414 8.64e-24 100
Msa0947880 MtrunA17_Chr8g0345461 35.028 177 108 4 1 172 217 391 3.97e-23 97.4
Msa0947880 MtrunA17_Chr4g0050561 35.556 180 106 5 1 173 208 384 4.52e-23 97.1
Msa0947880 MtrunA17_Chr2g0289231 32.065 184 119 4 3 185 359 537 4.98e-23 97.8
Msa0947880 MtrunA17_Chr1g0182711 33.520 179 110 5 1 173 240 415 2.73e-22 95.1
Msa0947880 MtrunA17_Chr7g0262801 33.520 179 110 5 1 173 239 414 3.23e-22 95.1
Msa0947880 MtrunA17_Chr1g0192151 32.768 177 112 4 1 172 219 393 5.12e-22 94.4
Msa0947880 MtrunA17_Chr4g0014731 32.768 177 112 4 1 172 220 394 5.63e-22 94.4
Msa0947880 MtrunA17_Chr2g0331161 34.078 179 109 6 1 173 466 641 7.64e-22 94.7
Msa0947880 MtrunA17_Chr3g0086411 31.694 183 101 5 1 162 267 446 1.51e-21 93.6
Msa0947880 MtrunA17_Chr3g0086411 28.054 221 141 7 37 246 7 220 4.38e-14 71.6
Msa0947880 MtrunA17_Chr4g0043381 34.637 179 107 5 2 175 890 1063 1.63e-21 94.0
Msa0947880 MtrunA17_Chr3g0086401 34.225 187 93 7 1 162 437 618 1.88e-21 93.6
Msa0947880 MtrunA17_Chr3g0086401 32.653 245 143 8 1 234 145 378 6.24e-20 89.0
Msa0947880 MtrunA17_Chr1g0168321 36.129 155 89 5 26 172 203 355 2.54e-21 92.8
Msa0947880 MtrunA17_Chr1g0200081 35.028 177 107 5 1 172 227 400 5.47e-21 91.7
Msa0947880 MtrunA17_Chr4g0033451 35.829 187 106 6 1 177 432 614 5.37e-20 89.4
Msa0947880 MtrunA17_Chr3g0129971 32.864 213 127 6 1 199 347 557 7.56e-20 89.0
Msa0947880 MtrunA17_Chr7g0255691 27.953 254 146 7 2 248 70 293 1.33e-19 87.8
Msa0947880 MtrunA17_Chr7g0255691 32.934 167 105 4 14 175 351 515 3.84e-16 77.8
Msa0947880 MtrunA17_Chr2g0316851 33.728 169 97 6 25 182 675 839 3.45e-19 87.0
Msa0947880 MtrunA17_Chr2g0327231 40.541 111 62 3 1 109 398 506 4.97e-19 86.3
Msa0947880 MtrunA17_Chr8g0357301 31.132 212 119 8 1 193 521 724 8.42e-19 85.9
Msa0947880 MtrunA17_Chr3g0108321 37.037 135 79 3 1 131 211 343 4.47e-18 82.8
Msa0947880 MtrunA17_Chr5g0432391 34.302 172 103 6 28 193 82 249 3.36e-16 77.8
Msa0947880 MtrunA17_Chr8g0388371 31.720 186 112 4 1 173 455 638 1.22e-15 76.6
Msa0947880 MtrunA17_Chr3g0135781 37.273 110 66 2 1 110 106 212 6.24e-13 66.2
Msa0947880 MtrunA17_Chr4g0047411 30.811 185 103 7 22 186 250 429 1.52e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0947880 AT4G28000.1 79.545 264 52 1 1 262 567 830 1.10e-146 431
Msa0947880 AT4G28000.2 79.545 264 52 1 1 262 569 832 1.16e-146 431
Msa0947880 AT5G52882.1 79.924 264 51 1 1 262 566 829 1.84e-146 430
Msa0947880 AT1G64110.1 78.707 263 52 2 1 262 565 824 1.81e-144 425
Msa0947880 AT1G64110.2 78.707 263 52 2 1 262 570 829 2.05e-144 425
Msa0947880 AT1G64110.4 78.707 263 52 2 1 262 570 829 2.05e-144 425
Msa0947880 AT1G64110.5 78.707 263 52 2 1 262 568 827 2.66e-144 424
Msa0947880 AT1G64110.3 78.707 263 52 2 1 262 568 827 2.66e-144 424
Msa0947880 AT4G28000.3 79.386 228 45 1 1 226 569 796 9.42e-123 368
Msa0947880 AT1G02890.1 59.316 263 96 3 1 262 994 1246 2.03e-102 323
Msa0947880 AT4G02480.1 58.175 263 99 3 1 262 1013 1265 5.90e-97 309
Msa0947880 AT4G24860.4 55.725 262 105 3 1 261 843 1094 2.18e-90 289
Msa0947880 AT4G24860.2 55.725 262 105 3 1 261 866 1117 3.37e-90 289
Msa0947880 AT4G24860.1 55.725 262 105 3 1 261 870 1121 3.85e-90 289
Msa0947880 AT4G24860.3 55.725 262 105 3 1 261 868 1119 3.85e-90 289
Msa0947880 AT3G19740.1 53.257 261 100 3 1 260 754 993 5.21e-86 276
Msa0947880 AT1G50140.2 52.107 261 103 3 1 260 742 981 7.59e-84 270
Msa0947880 AT1G50140.5 52.107 261 103 3 1 260 742 981 7.59e-84 270
Msa0947880 AT1G50140.3 52.107 261 103 3 1 260 764 1003 9.15e-84 270
Msa0947880 AT1G50140.1 52.107 261 103 3 1 260 764 1003 9.15e-84 270
Msa0947880 AT1G50140.4 52.107 261 103 3 1 260 764 1003 9.15e-84 270
Msa0947880 AT1G02890.2 52.091 263 87 4 1 262 994 1218 1.38e-80 263
Msa0947880 AT1G62130.2 48.669 263 112 5 1 262 796 1036 1.37e-72 240
Msa0947880 AT1G62130.1 48.669 263 112 5 1 262 803 1043 1.55e-72 239
Msa0947880 AT4G27680.1 41.667 264 114 6 1 258 134 363 5.92e-59 192
Msa0947880 AT5G53540.1 50.000 180 88 2 1 179 137 315 1.68e-56 186
Msa0947880 AT2G45500.4 44.886 176 94 2 1 174 131 305 8.77e-50 167
Msa0947880 AT2G45500.3 44.886 176 94 2 1 174 131 305 8.77e-50 167
Msa0947880 AT2G45500.2 44.886 176 94 2 1 174 264 438 1.14e-48 167
Msa0947880 AT2G45500.1 44.886 176 94 2 1 174 268 442 1.21e-48 167
Msa0947880 AT2G45500.5 44.886 176 94 2 1 174 274 448 1.64e-48 167
Msa0947880 AT3G27120.1 39.044 251 125 5 1 248 451 676 3.92e-48 169
Msa0947880 AT1G80350.1 36.471 255 135 5 1 248 287 521 2.55e-46 162
Msa0947880 AT2G34560.1 46.286 175 90 3 1 172 151 324 1.68e-44 154
Msa0947880 AT2G34560.2 46.286 175 90 3 1 172 160 333 2.53e-44 154
Msa0947880 AT2G27600.1 46.857 175 88 3 2 173 181 353 3.86e-43 152
Msa0947880 AT3G53230.1 37.563 197 112 6 1 192 530 720 4.94e-34 130
Msa0947880 AT3G53230.1 36.098 205 122 5 1 202 257 455 3.19e-30 119
Msa0947880 AT2G26140.1 42.442 172 93 4 1 169 275 443 2.52e-31 122
Msa0947880 AT3G09840.1 32.677 254 156 6 1 248 529 773 5.08e-31 121
Msa0947880 AT3G09840.1 36.893 206 119 6 1 202 256 454 1.06e-29 117
Msa0947880 AT5G03340.1 33.597 253 155 7 1 248 529 773 5.64e-31 121
Msa0947880 AT5G03340.1 37.379 206 118 6 1 202 256 454 4.72e-30 119
Msa0947880 AT3G56690.1 36.612 183 110 4 1 179 773 953 4.61e-29 116
Msa0947880 AT3G56690.1 32.222 180 115 4 2 177 434 610 2.50e-25 105
Msa0947880 AT3G01610.2 32.567 261 151 9 2 248 283 532 1.88e-28 114
Msa0947880 AT3G01610.2 35.028 177 107 5 10 182 586 758 1.22e-21 94.4
Msa0947880 AT3G01610.1 32.567 261 151 9 2 248 283 532 1.98e-28 114
Msa0947880 AT3G01610.1 35.028 177 107 5 10 182 586 758 1.20e-21 94.4
Msa0947880 AT5G42270.1 36.598 194 112 6 1 185 298 489 2.08e-27 111
Msa0947880 AT1G50250.1 36.598 194 112 6 1 185 310 501 3.48e-27 110
Msa0947880 AT1G45000.1 34.450 209 125 6 1 200 188 393 5.16e-27 108
Msa0947880 AT5G43010.1 34.300 207 128 5 1 200 188 393 6.78e-27 107
Msa0947880 AT5G53170.1 38.421 190 110 4 1 187 410 595 7.26e-27 109
Msa0947880 AT3G47060.1 38.857 175 97 4 1 167 373 545 3.11e-26 107
Msa0947880 AT5G15250.1 40.116 172 96 5 1 167 272 441 1.06e-25 106
Msa0947880 AT2G30950.1 38.095 189 110 5 1 184 275 461 1.53e-25 105
Msa0947880 AT2G30950.2 38.095 189 110 5 1 184 275 461 1.53e-25 105
Msa0947880 AT2G30950.3 38.095 189 110 5 1 184 275 461 1.53e-25 105
Msa0947880 AT2G30950.4 38.095 189 110 5 1 184 279 465 1.77e-25 105
Msa0947880 AT1G07510.1 36.000 175 102 5 1 167 375 547 1.82e-25 105
Msa0947880 AT3G02450.1 37.791 172 99 4 1 167 382 550 2.10e-25 105
Msa0947880 AT1G06430.1 40.116 172 96 5 1 167 268 437 3.90e-25 104
Msa0947880 AT1G06430.3 40.116 172 96 5 1 167 268 437 3.90e-25 104
Msa0947880 AT1G06430.2 40.116 172 96 5 1 167 268 437 3.90e-25 104
Msa0947880 AT2G29080.1 36.782 174 101 5 1 167 370 541 1.07e-24 103
Msa0947880 AT5G58870.1 37.714 175 99 4 1 167 377 549 3.00e-24 102
Msa0947880 AT5G08470.1 35.484 186 110 5 2 182 894 1074 1.04e-23 100
Msa0947880 AT5G08470.3 35.484 186 110 5 2 182 885 1065 1.07e-23 100
Msa0947880 AT4G29040.1 34.483 203 117 7 1 190 237 436 3.04e-23 98.2
Msa0947880 AT2G20140.1 34.637 179 108 5 1 173 237 412 3.59e-23 98.2
Msa0947880 AT1G53750.1 35.028 177 108 4 1 172 217 391 7.74e-23 97.1
Msa0947880 AT3G05530.1 33.898 177 110 4 1 172 220 394 1.13e-22 96.7
Msa0947880 AT5G19990.1 35.754 179 107 4 1 173 210 386 1.16e-22 96.7
Msa0947880 AT5G19990.3 35.754 179 107 4 1 173 210 386 1.16e-22 96.7
Msa0947880 AT1G53780.2 35.632 174 101 5 1 167 410 579 1.31e-22 97.1
Msa0947880 AT1G53780.1 35.632 174 101 5 1 167 389 558 1.32e-22 97.1
Msa0947880 AT1G53780.4 35.632 174 101 5 1 167 389 558 1.32e-22 97.1
Msa0947880 AT5G20000.1 35.754 179 107 4 1 173 210 386 1.38e-22 96.3
Msa0947880 AT1G53780.3 35.632 174 101 5 1 167 388 557 1.39e-22 97.1
Msa0947880 AT4G04180.2 33.333 186 118 4 2 186 372 552 1.57e-22 97.1
Msa0947880 AT4G04180.1 33.333 186 118 4 2 186 377 557 1.69e-22 96.7
Msa0947880 AT5G19990.2 35.754 179 107 4 1 173 152 328 1.98e-22 95.1
Msa0947880 AT3G16290.1 34.637 179 108 6 1 173 458 633 3.25e-22 96.3
Msa0947880 AT1G03000.1 29.114 237 159 7 1 229 706 941 7.78e-22 95.1
Msa0947880 AT5G58290.1 32.584 178 113 4 1 173 204 379 7.95e-22 94.0
Msa0947880 AT5G15250.2 35.385 195 96 6 1 167 272 464 1.81e-21 93.6
Msa0947880 AT1G09100.1 33.146 178 110 5 1 172 219 393 7.93e-21 91.3
Msa0947880 AT1G05910.1 35.484 186 108 6 1 177 430 612 1.03e-19 89.0
Msa0947880 AT5G64580.1 32.394 213 128 6 1 199 364 574 2.45e-19 87.8
Msa0947880 AT1G79560.1 29.767 215 118 8 1 193 541 744 6.61e-18 83.6
Msa0947880 AT1G79560.2 29.767 215 118 8 1 193 541 744 6.65e-18 83.6
Msa0947880 AT1G79560.3 29.767 215 118 8 1 193 541 744 6.73e-18 83.6
Msa0947880 AT3G15120.1 34.694 147 89 4 25 167 797 940 1.40e-17 82.8
Msa0947880 AT3G15120.2 34.694 147 89 4 25 167 807 950 1.41e-17 82.8
Msa0947880 AT4G23940.1 32.258 186 111 4 1 173 478 661 2.85e-17 81.6
Msa0947880 AT2G03670.1 32.759 174 99 5 13 175 347 513 7.20e-16 77.4
Msa0947880 AT2G03670.1 30.108 186 116 6 2 175 72 255 1.23e-13 70.9
Msa0947880 AT2G03670.2 30.108 186 116 6 2 175 72 255 9.06e-14 70.9

Find 65 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATGTCTTCCATACTTAA+AGG 0.156285 6_3:+31248408 None:intergenic
AAAGGCCTCAAGATGATTTC+TGG 0.173349 6_3:+31248426 None:intergenic
GTGAAATGCTAATTTCATTT+TGG 0.199307 6_3:-31247941 Msa0947880:three_prime_UTR
CATCTTGAGGCCTTTAAGTA+TGG 0.262573 6_3:-31248418 Msa0947880:CDS
AGAACAAGAATTTGTTCATT+AGG 0.265912 6_3:+31249554 None:intergenic
ATTAGTAATGGTGATTGTTA+TGG 0.278421 6_3:-31247559 Msa0947880:three_prime_UTR
CATTGGGATGGACTATTATC+TGG 0.315982 6_3:-31249578 Msa0947880:CDS
TTACAACATATCTAAAGTTT+TGG 0.319613 6_3:+31247659 None:intergenic
TATTGTGTCATGTGAGGTTT+TGG 0.351413 6_3:-31247721 Msa0947880:three_prime_UTR
TTGTTATGGATTGCATAAAA+TGG 0.363087 6_3:-31247545 Msa0947880:three_prime_UTR
CCGCGGCTTATCGACCTGTT+AGG 0.364530 6_3:-31248637 Msa0947880:CDS
TGTCCACCATCACTTCAAAA+TGG 0.368087 6_3:-31249760 Msa0947880:CDS
TATATCTTTGGAACACTTGA+AGG 0.383455 6_3:+31247850 None:intergenic
TTTGTTGAAATATACCCTTT+AGG 0.383667 6_3:+31247903 None:intergenic
TAGTTGAACTTGTTATAGTT+TGG 0.390380 6_3:-31247586 Msa0947880:three_prime_UTR
ACCATCACTTCAAAATGGTT+TGG 0.395578 6_3:-31249755 Msa0947880:CDS
ATCAAGATCAAATGGTCTAT+TGG 0.396067 6_3:+31249523 None:intergenic
TGCTGTATTAACTCCCTAAC+AGG 0.402030 6_3:+31248623 None:intergenic
GTTATTATTTGAAGCATCTT+CGG 0.409808 6_3:+31248461 None:intergenic
TTTAATATTGAGCAGGATCA+TGG 0.411554 6_3:-31248880 Msa0947880:intron
ACACGAAAACTTGGACTTCA+AGG 0.412437 6_3:-31248796 Msa0947880:CDS
TAATAATCTTCTAATACAAT+TGG 0.432943 6_3:+31247745 None:intergenic
TCTTCCATCTGCTGAGAATA+GGG 0.436797 6_3:-31248853 Msa0947880:CDS
AAATGAATTCATGACACATT+GGG 0.437919 6_3:-31249594 Msa0947880:CDS
GTCTTCCATCTGCTGAGAAT+AGG 0.445088 6_3:-31248854 Msa0947880:CDS
TGTACGGCGAAGGCGGTTCA+AGG 0.446430 6_3:-31247998 Msa0947880:CDS
CATGAAACAAGCTAAGAATC+AGG 0.448416 6_3:-31248391 Msa0947880:intron
TTTGTCACATATATCCTAAA+GGG 0.458879 6_3:-31247917 Msa0947880:three_prime_UTR
AAAGGAGAAACACGAAAACT+TGG 0.474800 6_3:-31248805 Msa0947880:CDS
ATTGCTTCATCAAGATCAAA+TGG 0.476293 6_3:+31249515 None:intergenic
ATTTGTCACATATATCCTAA+AGG 0.480477 6_3:-31247918 Msa0947880:three_prime_UTR
CGCGGCTTATCGACCTGTTA+GGG 0.486783 6_3:-31248636 Msa0947880:CDS
TTATACGACGGTTCGAGCGC+AGG 0.491319 6_3:-31249493 Msa0947880:intron
AAGGCGATTGCGAATGAAGC+AGG 0.496258 6_3:-31249806 Msa0947880:CDS
CTCGGTCAGCGTACTAGAGT+TGG 0.498745 6_3:-31249644 Msa0947880:CDS
TTTGTTCACGCTAGCAGCTA+AGG 0.504388 6_3:-31249708 Msa0947880:CDS
ACCATGACAGAAGGATTTAG+TGG 0.514138 6_3:-31248765 Msa0947880:CDS
AAAATGAATTCATGACACAT+TGG 0.516818 6_3:-31249595 Msa0947880:CDS
ATTTCCCTATTCTCAGCAGA+TGG 0.517657 6_3:+31248849 None:intergenic
TAGTTTGGTTCAATTAGTAA+TGG 0.522387 6_3:-31247571 Msa0947880:three_prime_UTR
ATTTAGTGGAAGTGATCTAA+AGG 0.528579 6_3:-31248751 Msa0947880:intron
TGCATCAGAAGGTTCAGTAA+TGG 0.535925 6_3:-31248045 Msa0947880:CDS
TCCACTAAATCCTTCTGTCA+TGG 0.536524 6_3:+31248764 None:intergenic
CCTTAAAACTCTTATGTCAA+AGG 0.539255 6_3:-31248823 Msa0947880:CDS
CTGCTAGCGTGAACAAAGCT+CGG 0.548824 6_3:+31249714 None:intergenic
GATGAAGTTGACAGCATGCT+CGG 0.560044 6_3:-31249662 Msa0947880:CDS
ATATTGAGCAGGATCATGGT+TGG 0.574060 6_3:-31248876 Msa0947880:intron
ATATCTTTGGAACACTTGAA+GGG 0.575428 6_3:+31247851 None:intergenic
TGTTAGGGAGTTAATACAGC+AGG 0.578490 6_3:-31248621 Msa0947880:CDS
GGGTATATTTCAACAAAGCA+AGG 0.585307 6_3:-31247897 Msa0947880:three_prime_UTR
AAACAATGGAATGAATTGTA+CGG 0.586269 6_3:-31248014 Msa0947880:CDS
TGGAATGAATTGTACGGCGA+AGG 0.590358 6_3:-31248008 Msa0947880:CDS
TAATGGCTGAGCTAAAACAA+TGG 0.592183 6_3:-31248028 Msa0947880:CDS
AATGAATTGTACGGCGAAGG+CGG 0.593092 6_3:-31248005 Msa0947880:CDS
GAATTCATGACACATTGGGA+TGG 0.601740 6_3:-31249590 Msa0947880:CDS
TATTAGTATTGTGTCATGTG+AGG 0.603209 6_3:-31247727 Msa0947880:three_prime_UTR
GATTGTATCATAAATGACAA+TGG 0.603570 6_3:-31247487 Msa0947880:three_prime_UTR
TACTAGAGTTGGAGAACATG+AGG 0.625329 6_3:-31249633 Msa0947880:CDS
GAACTAGCAACCATGACAGA+AGG 0.634509 6_3:-31248774 Msa0947880:CDS
TCATCGACGAATATAATAGT+CGG 0.640660 6_3:+31249680 None:intergenic
TTGGAGAACATGAGGCCATG+AGG 0.657661 6_3:-31249625 Msa0947880:CDS
ACAGAATTTGTGCATAACCG+CGG 0.668344 6_3:-31248654 Msa0947880:intron
ATGAACCAGAAATCATCTTG+AGG 0.676444 6_3:-31248431 Msa0947880:CDS
TTGATGAAGCAATTATACGA+CGG 0.688423 6_3:-31249505 Msa0947880:CDS
CCTAACAGGTCGATAAGCCG+CGG 0.727018 6_3:+31248637 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAACTAAATAATTTGAT+TGG - chr6_3:31248034-31248053 Msa0947880:CDS 10.0%
!! AAATAAAATAGTTTAAATGA+AGG - chr6_3:31248077-31248096 Msa0947880:intron 10.0%
!! AATAAAATAGTTTAAATGAA+GGG - chr6_3:31248078-31248097 Msa0947880:intron 10.0%
!! AAAAAACTAAATAATTTGAT+TGG - chr6_3:31248034-31248053 Msa0947880:CDS 10.0%
!! AAATAAAATAGTTTAAATGA+AGG - chr6_3:31248077-31248096 Msa0947880:intron 10.0%
!! AATAAAATAGTTTAAATGAA+GGG - chr6_3:31248078-31248097 Msa0947880:intron 10.0%
!!! TTTTATACCAATATATAAAG+CGG + chr6_3:31248018-31248037 None:intergenic 15.0%
!!! TTTGTTAATTATGAAGTTTT+AGG + chr6_3:31248190-31248209 None:intergenic 15.0%
!! CTTTCTCAATAAAAAATTTA+TGG + chr6_3:31248217-31248236 None:intergenic 15.0%
!!! TATATTTTTTAATATTGAGC+AGG - chr6_3:31248416-31248435 Msa0947880:CDS 15.0%
!! TAATAATCTTCTAATACAAT+TGG + chr6_3:31249561-31249580 None:intergenic 15.0%
!!! TTTTATACCAATATATAAAG+CGG + chr6_3:31248018-31248037 None:intergenic 15.0%
!!! TTTGTTAATTATGAAGTTTT+AGG + chr6_3:31248190-31248209 None:intergenic 15.0%
!! CTTTCTCAATAAAAAATTTA+TGG + chr6_3:31248217-31248236 None:intergenic 15.0%
!!! TATATTTTTTAATATTGAGC+AGG - chr6_3:31248416-31248435 Msa0947880:CDS 15.0%
!! TAATAATCTTCTAATACAAT+TGG + chr6_3:31249561-31249580 None:intergenic 15.0%
!!! TTCATTTTTAATTTTCCTCA+TGG + chr6_3:31247696-31247715 None:intergenic 20.0%
!! ACACTAATAAAGGATAAAAT+TGG - chr6_3:31247961-31247980 Msa0947880:exon 20.0%
!! ATAAAGCGGAATATAATTAT+TGG + chr6_3:31248004-31248023 None:intergenic 20.0%
!! TTATATTCCGCTTTATATAT+TGG - chr6_3:31248008-31248027 Msa0947880:CDS 20.0%
!!! TGAAGTTTTAGGTTTTTTAA+TGG + chr6_3:31248179-31248198 None:intergenic 20.0%
!! GGATAAAGTATATAAATGAA+TGG + chr6_3:31248265-31248284 None:intergenic 20.0%
!! TAATATCAATAACTGAGTAT+TGG - chr6_3:31248769-31248788 Msa0947880:CDS 20.0%
!! GAGATGTTATTATTTCAAAA+AGG - chr6_3:31249484-31249503 Msa0947880:intron 20.0%
!!! TTACAACATATCTAAAGTTT+TGG + chr6_3:31249647-31249666 None:intergenic 20.0%
!!! TTCATTTTTAATTTTCCTCA+TGG + chr6_3:31247696-31247715 None:intergenic 20.0%
!! ACACTAATAAAGGATAAAAT+TGG - chr6_3:31247961-31247980 Msa0947880:exon 20.0%
!! ATAAAGCGGAATATAATTAT+TGG + chr6_3:31248004-31248023 None:intergenic 20.0%
!! TTATATTCCGCTTTATATAT+TGG - chr6_3:31248008-31248027 Msa0947880:CDS 20.0%
!!! TGAAGTTTTAGGTTTTTTAA+TGG + chr6_3:31248179-31248198 None:intergenic 20.0%
!! GGATAAAGTATATAAATGAA+TGG + chr6_3:31248265-31248284 None:intergenic 20.0%
!! TAATATCAATAACTGAGTAT+TGG - chr6_3:31248769-31248788 Msa0947880:CDS 20.0%
!! GAGATGTTATTATTTCAAAA+AGG - chr6_3:31249484-31249503 Msa0947880:intron 20.0%
!!! TTACAACATATCTAAAGTTT+TGG + chr6_3:31249647-31249666 None:intergenic 20.0%
! AAAATGAATTCATGACACAT+TGG - chr6_3:31247708-31247727 Msa0947880:three_prime_UTR 25.0%
! AAATGAATTCATGACACATT+GGG - chr6_3:31247709-31247728 Msa0947880:three_prime_UTR 25.0%
!! AGAACAAGAATTTGTTCATT+AGG + chr6_3:31247752-31247771 None:intergenic 25.0%
!!! ATAGAGAAGATATCGATTTT+CGG + chr6_3:31248128-31248147 None:intergenic 25.0%
!! TTTTTATTGAGAAAGAAGCA+TGG - chr6_3:31248222-31248241 Msa0947880:intron 25.0%
! ATCCATGTGAAAAATAAGAA+TGG + chr6_3:31248306-31248325 None:intergenic 25.0%
!! GTTATTATTTGAAGCATCTT+CGG + chr6_3:31248845-31248864 None:intergenic 25.0%
! ACTGTCAAGTAATTAAATAG+CGG - chr6_3:31248966-31248985 Msa0947880:intron 25.0%
! ATATTTCATTCATGCTTCAT+CGG - chr6_3:31249165-31249184 Msa0947880:intron 25.0%
! AAACAATGGAATGAATTGTA+CGG - chr6_3:31249289-31249308 Msa0947880:intron 25.0%
!! GTGAAATGCTAATTTCATTT+TGG - chr6_3:31249362-31249381 Msa0947880:intron 25.0%
! ATTTGTCACATATATCCTAA+AGG - chr6_3:31249385-31249404 Msa0947880:intron 25.0%
! TTTGTCACATATATCCTAAA+GGG - chr6_3:31249386-31249405 Msa0947880:intron 25.0%
! TTTGTTGAAATATACCCTTT+AGG + chr6_3:31249403-31249422 None:intergenic 25.0%
!!! TCTCTTAGCTTTTATATCTT+TGG + chr6_3:31249468-31249487 None:intergenic 25.0%
! TTATTTCAAAAAGGATGCTT+AGG - chr6_3:31249493-31249512 Msa0947880:intron 25.0%
!!! TAGTTGAACTTGTTATAGTT+TGG - chr6_3:31249717-31249736 Msa0947880:CDS 25.0%
!! TAGTTTGGTTCAATTAGTAA+TGG - chr6_3:31249732-31249751 Msa0947880:CDS 25.0%
! ATTAGTAATGGTGATTGTTA+TGG - chr6_3:31249744-31249763 Msa0947880:CDS 25.0%
!! TTGTTATGGATTGCATAAAA+TGG - chr6_3:31249758-31249777 Msa0947880:CDS 25.0%
! GATTGTATCATAAATGACAA+TGG - chr6_3:31249816-31249835 Msa0947880:CDS 25.0%
! AAAATGAATTCATGACACAT+TGG - chr6_3:31247708-31247727 Msa0947880:three_prime_UTR 25.0%
! AAATGAATTCATGACACATT+GGG - chr6_3:31247709-31247728 Msa0947880:three_prime_UTR 25.0%
!! AGAACAAGAATTTGTTCATT+AGG + chr6_3:31247752-31247771 None:intergenic 25.0%
!!! ATAGAGAAGATATCGATTTT+CGG + chr6_3:31248128-31248147 None:intergenic 25.0%
!! TTTTTATTGAGAAAGAAGCA+TGG - chr6_3:31248222-31248241 Msa0947880:intron 25.0%
! ATCCATGTGAAAAATAAGAA+TGG + chr6_3:31248306-31248325 None:intergenic 25.0%
!! GTTATTATTTGAAGCATCTT+CGG + chr6_3:31248845-31248864 None:intergenic 25.0%
! ACTGTCAAGTAATTAAATAG+CGG - chr6_3:31248966-31248985 Msa0947880:intron 25.0%
! ATATTTCATTCATGCTTCAT+CGG - chr6_3:31249165-31249184 Msa0947880:intron 25.0%
! AAACAATGGAATGAATTGTA+CGG - chr6_3:31249289-31249308 Msa0947880:intron 25.0%
!! GTGAAATGCTAATTTCATTT+TGG - chr6_3:31249362-31249381 Msa0947880:intron 25.0%
! ATTTGTCACATATATCCTAA+AGG - chr6_3:31249385-31249404 Msa0947880:intron 25.0%
! TTTGTCACATATATCCTAAA+GGG - chr6_3:31249386-31249405 Msa0947880:intron 25.0%
! TTTGTTGAAATATACCCTTT+AGG + chr6_3:31249403-31249422 None:intergenic 25.0%
!!! TCTCTTAGCTTTTATATCTT+TGG + chr6_3:31249468-31249487 None:intergenic 25.0%
! TTATTTCAAAAAGGATGCTT+AGG - chr6_3:31249493-31249512 Msa0947880:intron 25.0%
!!! TAGTTGAACTTGTTATAGTT+TGG - chr6_3:31249717-31249736 Msa0947880:CDS 25.0%
!! TAGTTTGGTTCAATTAGTAA+TGG - chr6_3:31249732-31249751 Msa0947880:CDS 25.0%
! ATTAGTAATGGTGATTGTTA+TGG - chr6_3:31249744-31249763 Msa0947880:CDS 25.0%
!! TTGTTATGGATTGCATAAAA+TGG - chr6_3:31249758-31249777 Msa0947880:CDS 25.0%
! GATTGTATCATAAATGACAA+TGG - chr6_3:31249816-31249835 Msa0947880:CDS 25.0%
TCATCGACGAATATAATAGT+CGG + chr6_3:31247626-31247645 None:intergenic 30.0%
ATCAAGATCAAATGGTCTAT+TGG + chr6_3:31247783-31247802 None:intergenic 30.0%
ATTGCTTCATCAAGATCAAA+TGG + chr6_3:31247791-31247810 None:intergenic 30.0%
TTGATGAAGCAATTATACGA+CGG - chr6_3:31247798-31247817 Msa0947880:intron 30.0%
TCGATATCTTCTCTATACAT+AGG - chr6_3:31248132-31248151 Msa0947880:intron 30.0%
!!! GTCCATTCTTATTTTTCACA+TGG - chr6_3:31248301-31248320 Msa0947880:intron 30.0%
TTTAATATTGAGCAGGATCA+TGG - chr6_3:31248423-31248442 Msa0947880:CDS 30.0%
! CCTTTGACATAAGAGTTTTA+AGG + chr6_3:31248483-31248502 None:intergenic 30.0%
CCTTAAAACTCTTATGTCAA+AGG - chr6_3:31248480-31248499 Msa0947880:CDS 30.0%
ATTTAGTGGAAGTGATCTAA+AGG - chr6_3:31248552-31248571 Msa0947880:intron 30.0%
! TATTGGTTGCTTCTTATATC+AGG - chr6_3:31248786-31248805 Msa0947880:CDS 30.0%
TCAGGAAAAGAAGAAAAAAG+AGG - chr6_3:31248804-31248823 Msa0947880:CDS 30.0%
TTCATGTCTTCCATACTTAA+AGG + chr6_3:31248898-31248917 None:intergenic 30.0%
TAATTAAATAGCGGCTATAG+TGG - chr6_3:31248975-31248994 Msa0947880:intron 30.0%
!! TACAAAGTGTTGTCAAATAG+CGG - chr6_3:31249040-31249059 Msa0947880:intron 30.0%
GGCTATATTAAAAAAGCTAG+CGG - chr6_3:31249061-31249080 Msa0947880:intron 30.0%
ATCGATGAATGTTTATATGC+AGG - chr6_3:31249222-31249241 Msa0947880:intron 30.0%
!! ATATCTTTGGAACACTTGAA+GGG + chr6_3:31249455-31249474 None:intergenic 30.0%
!! TATATCTTTGGAACACTTGA+AGG + chr6_3:31249456-31249475 None:intergenic 30.0%
TATTAGTATTGTGTCATGTG+AGG - chr6_3:31249576-31249595 Msa0947880:CDS 30.0%
!! GGAAGATGCAATTGATTTTT+AGG - chr6_3:31249603-31249622 Msa0947880:CDS 30.0%
!! GCAATTGATTTTTAGGAAGT+AGG - chr6_3:31249610-31249629 Msa0947880:CDS 30.0%
TCATCGACGAATATAATAGT+CGG + chr6_3:31247626-31247645 None:intergenic 30.0%
ATCAAGATCAAATGGTCTAT+TGG + chr6_3:31247783-31247802 None:intergenic 30.0%
ATTGCTTCATCAAGATCAAA+TGG + chr6_3:31247791-31247810 None:intergenic 30.0%
TTGATGAAGCAATTATACGA+CGG - chr6_3:31247798-31247817 Msa0947880:intron 30.0%
TCGATATCTTCTCTATACAT+AGG - chr6_3:31248132-31248151 Msa0947880:intron 30.0%
!!! GTCCATTCTTATTTTTCACA+TGG - chr6_3:31248301-31248320 Msa0947880:intron 30.0%
TTTAATATTGAGCAGGATCA+TGG - chr6_3:31248423-31248442 Msa0947880:CDS 30.0%
! CCTTTGACATAAGAGTTTTA+AGG + chr6_3:31248483-31248502 None:intergenic 30.0%
CCTTAAAACTCTTATGTCAA+AGG - chr6_3:31248480-31248499 Msa0947880:CDS 30.0%
ATTTAGTGGAAGTGATCTAA+AGG - chr6_3:31248552-31248571 Msa0947880:intron 30.0%
! TATTGGTTGCTTCTTATATC+AGG - chr6_3:31248786-31248805 Msa0947880:CDS 30.0%
TCAGGAAAAGAAGAAAAAAG+AGG - chr6_3:31248804-31248823 Msa0947880:CDS 30.0%
TTCATGTCTTCCATACTTAA+AGG + chr6_3:31248898-31248917 None:intergenic 30.0%
TAATTAAATAGCGGCTATAG+TGG - chr6_3:31248975-31248994 Msa0947880:intron 30.0%
!! TACAAAGTGTTGTCAAATAG+CGG - chr6_3:31249040-31249059 Msa0947880:intron 30.0%
GGCTATATTAAAAAAGCTAG+CGG - chr6_3:31249061-31249080 Msa0947880:intron 30.0%
ATCGATGAATGTTTATATGC+AGG - chr6_3:31249222-31249241 Msa0947880:intron 30.0%
!! ATATCTTTGGAACACTTGAA+GGG + chr6_3:31249455-31249474 None:intergenic 30.0%
!! TATATCTTTGGAACACTTGA+AGG + chr6_3:31249456-31249475 None:intergenic 30.0%
TATTAGTATTGTGTCATGTG+AGG - chr6_3:31249576-31249595 Msa0947880:CDS 30.0%
!! GGAAGATGCAATTGATTTTT+AGG - chr6_3:31249603-31249622 Msa0947880:CDS 30.0%
!! GCAATTGATTTTTAGGAAGT+AGG - chr6_3:31249610-31249629 Msa0947880:CDS 30.0%
!!! AAACCATTTTGAAGTGATGG+TGG + chr6_3:31247549-31247568 None:intergenic 35.0%
ACCATCACTTCAAAATGGTT+TGG - chr6_3:31247548-31247567 Msa0947880:three_prime_UTR 35.0%
!!! TCCAAACCATTTTGAAGTGA+TGG + chr6_3:31247552-31247571 None:intergenic 35.0%
GCTAACAATAAGACAAGATG+TGG + chr6_3:31247841-31247860 None:intergenic 35.0%
TGCATGTGACTTTGTTCTAA+TGG + chr6_3:31247905-31247924 None:intergenic 35.0%
CATAGGTATAGATGAACAAC+TGG - chr6_3:31248149-31248168 Msa0947880:intron 35.0%
CTTTATCCTCATGAGTTATG+AGG - chr6_3:31248277-31248296 Msa0947880:intron 35.0%
AAAGGAGAAACACGAAAACT+TGG - chr6_3:31248498-31248517 Msa0947880:CDS 35.0%
AATACAGCAGGAGAAAAAGA+AGG - chr6_3:31248694-31248713 Msa0947880:intron 35.0%
ATGAACCAGAAATCATCTTG+AGG - chr6_3:31248872-31248891 Msa0947880:intron 35.0%
CATGAAACAAGCTAAGAATC+AGG - chr6_3:31248912-31248931 Msa0947880:intron 35.0%
AAACAAGCTAAGAATCAGGT+AGG - chr6_3:31248916-31248935 Msa0947880:intron 35.0%
GATGAATGTTTATATGCAGG+TGG - chr6_3:31249225-31249244 Msa0947880:intron 35.0%
TAATGGCTGAGCTAAAACAA+TGG - chr6_3:31249275-31249294 Msa0947880:intron 35.0%
GGGTATATTTCAACAAAGCA+AGG - chr6_3:31249406-31249425 Msa0947880:intron 35.0%
!!! AGAGGGCTCTAGAATTTTTT+TGG - chr6_3:31249516-31249535 Msa0947880:CDS 35.0%
! TATTGTGTCATGTGAGGTTT+TGG - chr6_3:31249582-31249601 Msa0947880:CDS 35.0%
!!! AAACCATTTTGAAGTGATGG+TGG + chr6_3:31247549-31247568 None:intergenic 35.0%
ACCATCACTTCAAAATGGTT+TGG - chr6_3:31247548-31247567 Msa0947880:three_prime_UTR 35.0%
!!! TCCAAACCATTTTGAAGTGA+TGG + chr6_3:31247552-31247571 None:intergenic 35.0%
GCTAACAATAAGACAAGATG+TGG + chr6_3:31247841-31247860 None:intergenic 35.0%
TGCATGTGACTTTGTTCTAA+TGG + chr6_3:31247905-31247924 None:intergenic 35.0%
CATAGGTATAGATGAACAAC+TGG - chr6_3:31248149-31248168 Msa0947880:intron 35.0%
CTTTATCCTCATGAGTTATG+AGG - chr6_3:31248277-31248296 Msa0947880:intron 35.0%
AAAGGAGAAACACGAAAACT+TGG - chr6_3:31248498-31248517 Msa0947880:CDS 35.0%
AATACAGCAGGAGAAAAAGA+AGG - chr6_3:31248694-31248713 Msa0947880:intron 35.0%
ATGAACCAGAAATCATCTTG+AGG - chr6_3:31248872-31248891 Msa0947880:intron 35.0%
CATGAAACAAGCTAAGAATC+AGG - chr6_3:31248912-31248931 Msa0947880:intron 35.0%
AAACAAGCTAAGAATCAGGT+AGG - chr6_3:31248916-31248935 Msa0947880:intron 35.0%
GATGAATGTTTATATGCAGG+TGG - chr6_3:31249225-31249244 Msa0947880:intron 35.0%
TAATGGCTGAGCTAAAACAA+TGG - chr6_3:31249275-31249294 Msa0947880:intron 35.0%
GGGTATATTTCAACAAAGCA+AGG - chr6_3:31249406-31249425 Msa0947880:intron 35.0%
!!! AGAGGGCTCTAGAATTTTTT+TGG - chr6_3:31249516-31249535 Msa0947880:CDS 35.0%
! TATTGTGTCATGTGAGGTTT+TGG - chr6_3:31249582-31249601 Msa0947880:CDS 35.0%
CGGAAAAACAATGCTAGCAA+AGG - chr6_3:31247478-31247497 Msa0947880:three_prime_UTR 40.0%
TGTCCACCATCACTTCAAAA+TGG - chr6_3:31247543-31247562 Msa0947880:three_prime_UTR 40.0%
TACTAGAGTTGGAGAACATG+AGG - chr6_3:31247670-31247689 Msa0947880:three_prime_UTR 40.0%
GAATTCATGACACATTGGGA+TGG - chr6_3:31247713-31247732 Msa0947880:three_prime_UTR 40.0%
!! CATTGGGATGGACTATTATC+TGG - chr6_3:31247725-31247744 Msa0947880:three_prime_UTR 40.0%
GTGCAGACAGACACTAATAA+AGG - chr6_3:31247951-31247970 Msa0947880:exon 40.0%
ATATTGAGCAGGATCATGGT+TGG - chr6_3:31248427-31248446 Msa0947880:CDS 40.0%
TCTTCCATCTGCTGAGAATA+GGG - chr6_3:31248450-31248469 Msa0947880:CDS 40.0%
ATTTCCCTATTCTCAGCAGA+TGG + chr6_3:31248457-31248476 None:intergenic 40.0%
ACACGAAAACTTGGACTTCA+AGG - chr6_3:31248507-31248526 Msa0947880:intron 40.0%
ACCATGACAGAAGGATTTAG+TGG - chr6_3:31248538-31248557 Msa0947880:intron 40.0%
TCCACTAAATCCTTCTGTCA+TGG + chr6_3:31248542-31248561 None:intergenic 40.0%
CGGTTATGCACAAATTCTGT+TGG + chr6_3:31248649-31248668 None:intergenic 40.0%
ACAGAATTTGTGCATAACCG+CGG - chr6_3:31248649-31248668 Msa0947880:CDS 40.0%
TGCTGTATTAACTCCCTAAC+AGG + chr6_3:31248683-31248702 None:intergenic 40.0%
TGTTAGGGAGTTAATACAGC+AGG - chr6_3:31248682-31248701 Msa0947880:intron 40.0%
GCAGGAGAAAAAGAAGGAAA+TGG - chr6_3:31248700-31248719 Msa0947880:intron 40.0%
AAAGGCCTCAAGATGATTTC+TGG + chr6_3:31248880-31248899 None:intergenic 40.0%
CATCTTGAGGCCTTTAAGTA+TGG - chr6_3:31248885-31248904 Msa0947880:intron 40.0%
! TCTTTTTCTCATGTCAACCG+CGG + chr6_3:31249116-31249135 None:intergenic 40.0%
TGCATCAGAAGGTTCAGTAA+TGG - chr6_3:31249258-31249277 Msa0947880:intron 40.0%
TCAAAAAGGATGCTTAGGAG+AGG - chr6_3:31249498-31249517 Msa0947880:CDS 40.0%
CAAAAAGGATGCTTAGGAGA+GGG - chr6_3:31249499-31249518 Msa0947880:CDS 40.0%
AATGACAATGGACGTTCATG+CGG - chr6_3:31249828-31249847 Msa0947880:exon 40.0%
CGGAAAAACAATGCTAGCAA+AGG - chr6_3:31247478-31247497 Msa0947880:three_prime_UTR 40.0%
TGTCCACCATCACTTCAAAA+TGG - chr6_3:31247543-31247562 Msa0947880:three_prime_UTR 40.0%
TACTAGAGTTGGAGAACATG+AGG - chr6_3:31247670-31247689 Msa0947880:three_prime_UTR 40.0%
GAATTCATGACACATTGGGA+TGG - chr6_3:31247713-31247732 Msa0947880:three_prime_UTR 40.0%
!! CATTGGGATGGACTATTATC+TGG - chr6_3:31247725-31247744 Msa0947880:three_prime_UTR 40.0%
GTGCAGACAGACACTAATAA+AGG - chr6_3:31247951-31247970 Msa0947880:exon 40.0%
ATATTGAGCAGGATCATGGT+TGG - chr6_3:31248427-31248446 Msa0947880:CDS 40.0%
TCTTCCATCTGCTGAGAATA+GGG - chr6_3:31248450-31248469 Msa0947880:CDS 40.0%
ATTTCCCTATTCTCAGCAGA+TGG + chr6_3:31248457-31248476 None:intergenic 40.0%
ACACGAAAACTTGGACTTCA+AGG - chr6_3:31248507-31248526 Msa0947880:intron 40.0%
ACCATGACAGAAGGATTTAG+TGG - chr6_3:31248538-31248557 Msa0947880:intron 40.0%
TCCACTAAATCCTTCTGTCA+TGG + chr6_3:31248542-31248561 None:intergenic 40.0%
CGGTTATGCACAAATTCTGT+TGG + chr6_3:31248649-31248668 None:intergenic 40.0%
ACAGAATTTGTGCATAACCG+CGG - chr6_3:31248649-31248668 Msa0947880:CDS 40.0%
TGCTGTATTAACTCCCTAAC+AGG + chr6_3:31248683-31248702 None:intergenic 40.0%
TGTTAGGGAGTTAATACAGC+AGG - chr6_3:31248682-31248701 Msa0947880:intron 40.0%
GCAGGAGAAAAAGAAGGAAA+TGG - chr6_3:31248700-31248719 Msa0947880:intron 40.0%
AAAGGCCTCAAGATGATTTC+TGG + chr6_3:31248880-31248899 None:intergenic 40.0%
CATCTTGAGGCCTTTAAGTA+TGG - chr6_3:31248885-31248904 Msa0947880:intron 40.0%
! TCTTTTTCTCATGTCAACCG+CGG + chr6_3:31249116-31249135 None:intergenic 40.0%
TGCATCAGAAGGTTCAGTAA+TGG - chr6_3:31249258-31249277 Msa0947880:intron 40.0%
TCAAAAAGGATGCTTAGGAG+AGG - chr6_3:31249498-31249517 Msa0947880:CDS 40.0%
CAAAAAGGATGCTTAGGAGA+GGG - chr6_3:31249499-31249518 Msa0947880:CDS 40.0%
TTTGTTCACGCTAGCAGCTA+AGG - chr6_3:31247595-31247614 Msa0947880:three_prime_UTR 45.0%
GATGAAGTTGACAGCATGCT+CGG - chr6_3:31247641-31247660 Msa0947880:three_prime_UTR 45.0%
TGGACACCTCATAACTCATG+AGG + chr6_3:31248286-31248305 None:intergenic 45.0%
GTCTTCCATCTGCTGAGAAT+AGG - chr6_3:31248449-31248468 Msa0947880:CDS 45.0%
GAACTAGCAACCATGACAGA+AGG - chr6_3:31248529-31248548 Msa0947880:intron 45.0%
! GCTGCAAGTTTTGCATCAGA+AGG - chr6_3:31249247-31249266 Msa0947880:intron 45.0%
TGGAATGAATTGTACGGCGA+AGG - chr6_3:31249295-31249314 Msa0947880:intron 45.0%
AATGAATTGTACGGCGAAGG+CGG - chr6_3:31249298-31249317 Msa0947880:intron 45.0%
TTTGTTCACGCTAGCAGCTA+AGG - chr6_3:31247595-31247614 Msa0947880:three_prime_UTR 45.0%
GATGAAGTTGACAGCATGCT+CGG - chr6_3:31247641-31247660 Msa0947880:three_prime_UTR 45.0%
TGGACACCTCATAACTCATG+AGG + chr6_3:31248286-31248305 None:intergenic 45.0%
GTCTTCCATCTGCTGAGAAT+AGG - chr6_3:31248449-31248468 Msa0947880:CDS 45.0%
GAACTAGCAACCATGACAGA+AGG - chr6_3:31248529-31248548 Msa0947880:intron 45.0%
! GCTGCAAGTTTTGCATCAGA+AGG - chr6_3:31249247-31249266 Msa0947880:intron 45.0%
TGGAATGAATTGTACGGCGA+AGG - chr6_3:31249295-31249314 Msa0947880:intron 45.0%
AATGAATTGTACGGCGAAGG+CGG - chr6_3:31249298-31249317 Msa0947880:intron 45.0%
AAGGCGATTGCGAATGAAGC+AGG - chr6_3:31247497-31247516 Msa0947880:three_prime_UTR 50.0%
CTGCTAGCGTGAACAAAGCT+CGG + chr6_3:31247592-31247611 None:intergenic 50.0%
TTGGAGAACATGAGGCCATG+AGG - chr6_3:31247678-31247697 Msa0947880:three_prime_UTR 50.0%
! CCACTATTTTCCGTGATCCG+CGG - chr6_3:31249096-31249115 Msa0947880:intron 50.0%
AAGGCGATTGCGAATGAAGC+AGG - chr6_3:31247497-31247516 Msa0947880:three_prime_UTR 50.0%
CTGCTAGCGTGAACAAAGCT+CGG + chr6_3:31247592-31247611 None:intergenic 50.0%
TTGGAGAACATGAGGCCATG+AGG - chr6_3:31247678-31247697 Msa0947880:three_prime_UTR 50.0%
! CCACTATTTTCCGTGATCCG+CGG - chr6_3:31249096-31249115 Msa0947880:intron 50.0%
CTCGGTCAGCGTACTAGAGT+TGG - chr6_3:31247659-31247678 Msa0947880:three_prime_UTR 55.0%
TTATACGACGGTTCGAGCGC+AGG - chr6_3:31247810-31247829 Msa0947880:intron 55.0%
CCTAACAGGTCGATAAGCCG+CGG + chr6_3:31248669-31248688 None:intergenic 55.0%
CGCGGCTTATCGACCTGTTA+GGG - chr6_3:31248667-31248686 Msa0947880:intron 55.0%
CCGCGGATCACGGAAAATAG+TGG + chr6_3:31249099-31249118 None:intergenic 55.0%
CTCATGTCAACCGCGGATCA+CGG + chr6_3:31249109-31249128 None:intergenic 55.0%
CTCGGTCAGCGTACTAGAGT+TGG - chr6_3:31247659-31247678 Msa0947880:three_prime_UTR 55.0%
TTATACGACGGTTCGAGCGC+AGG - chr6_3:31247810-31247829 Msa0947880:intron 55.0%
CCTAACAGGTCGATAAGCCG+CGG + chr6_3:31248669-31248688 None:intergenic 55.0%
CGCGGCTTATCGACCTGTTA+GGG - chr6_3:31248667-31248686 Msa0947880:intron 55.0%
CCGCGGATCACGGAAAATAG+TGG + chr6_3:31249099-31249118 None:intergenic 55.0%
CTCATGTCAACCGCGGATCA+CGG + chr6_3:31249109-31249128 None:intergenic 55.0%
CCGCGGCTTATCGACCTGTT+AGG - chr6_3:31248666-31248685 Msa0947880:intron 60.0%
TGTACGGCGAAGGCGGTTCA+AGG - chr6_3:31249305-31249324 Msa0947880:intron 60.0%
CCGCGGCTTATCGACCTGTT+AGG - chr6_3:31248666-31248685 Msa0947880:intron 60.0%
TGTACGGCGAAGGCGGTTCA+AGG - chr6_3:31249305-31249324 Msa0947880:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 31247478 31249847 31247478 ID=Msa0947880;Name=Msa0947880
chr6_3 mRNA 31247478 31249847 31247478 ID=Msa0947880-mRNA-1;Parent=Msa0947880;Name=Msa0947880-mRNA-1;_AED=0.11;_eAED=0.11;_QI=10|1|1|1|0.8|0.66|6|457|262
chr6_3 exon 31247478 31247805 31247478 ID=Msa0947880-mRNA-1:exon:8261;Parent=Msa0947880-mRNA-1
chr6_3 exon 31247839 31248081 31247839 ID=Msa0947880-mRNA-1:exon:8260;Parent=Msa0947880-mRNA-1
chr6_3 exon 31248392 31248517 31248392 ID=Msa0947880-mRNA-1:exon:8259;Parent=Msa0947880-mRNA-1
chr6_3 exon 31248604 31248672 31248604 ID=Msa0947880-mRNA-1:exon:8258;Parent=Msa0947880-mRNA-1
chr6_3 exon 31248752 31248887 31248752 ID=Msa0947880-mRNA-1:exon:8257;Parent=Msa0947880-mRNA-1
chr6_3 exon 31249494 31249847 31249494 ID=Msa0947880-mRNA-1:exon:8256;Parent=Msa0947880-mRNA-1
chr6_3 five_prime_UTR 31249838 31249847 31249838 ID=Msa0947880-mRNA-1:five_prime_utr;Parent=Msa0947880-mRNA-1
chr6_3 CDS 31249494 31249837 31249494 ID=Msa0947880-mRNA-1:cds;Parent=Msa0947880-mRNA-1
chr6_3 CDS 31248752 31248887 31248752 ID=Msa0947880-mRNA-1:cds;Parent=Msa0947880-mRNA-1
chr6_3 CDS 31248604 31248672 31248604 ID=Msa0947880-mRNA-1:cds;Parent=Msa0947880-mRNA-1
chr6_3 CDS 31248392 31248517 31248392 ID=Msa0947880-mRNA-1:cds;Parent=Msa0947880-mRNA-1
chr6_3 CDS 31247968 31248081 31247968 ID=Msa0947880-mRNA-1:cds;Parent=Msa0947880-mRNA-1
chr6_3 three_prime_UTR 31247839 31247967 31247839 ID=Msa0947880-mRNA-1:three_prime_utr;Parent=Msa0947880-mRNA-1
chr6_3 three_prime_UTR 31247478 31247805 31247478 ID=Msa0947880-mRNA-1:three_prime_utr;Parent=Msa0947880-mRNA-1
Gene Sequence

>Msa0947880

ATGCTAGCAAAGGCGATTGCGAATGAAGCAGGAGCAAGTTTCATTAATGTCTCGATGTCCACCATCACTTCAAAATGGTTTGGAGAAGACGAGAAGAATGTCCGAGCTTTGTTCACGCTAGCAGCTAAGGTTGCTCCGACTATTATATTCGTCGATGAAGTTGACAGCATGCTCGGTCAGCGTACTAGAGTTGGAGAACATGAGGCCATGAGGAAAATTAAAAATGAATTCATGACACATTGGGATGGACTATTATCTGGACCTAATGAACAAATTCTTGTTCTTGCTGCTACCAATAGACCATTTGATCTTGATGAAGCAATTATACGACGGTTCGAGCGCAGGATCATGGTTGGTCTTCCATCTGCTGAGAATAGGGAAATGATCCTTAAAACTCTTATGTCAAAGGAGAAACACGAAAACTTGGACTTCAAGGAACTAGCAACCATGACAGAAGGATTTAGTGGAAGTGATCTAAAGAATTTGTGCATAACCGCGGCTTATCGACCTGTTAGGGAGTTAATACAGCAGGAGAAAAAGAAGGAAATGGAAAAGAAGAAAAAAGAGGCAGAAAGTGTAAATTCCGAAGATGCTTCAAATAATAACGATAACGATGAACCAGAAATCATCTTGAGGCCTTTAAGTATGGAAGACATGAAACAAGCTAAGAATCAGGTGGCTGCAAGTTTTGCATCAGAAGGTTCAGTAATGGCTGAGCTAAAACAATGGAATGAATTGTACGGCGAAGGCGGTTCAAGGAAGAAACAACAGCTCACATACTTTCTTTAA
Protein sequence

>Msa0947880

MLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVAPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLSGPNEQILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILKTLMSKEKHENLDFKELATMTEGFSGSDLKNLCITAAYRPVRELIQQEKKKEMEKKKKEAESVNSEDASNNNDNDEPEIILRPLSMEDMKQAKNQVAASFASEGSVMAELKQWNELYGEGGSRKKQQLTYFL*