AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0408300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0408300 MtrunA17_Chr3g0098661 98.353 425 7 0 4 428 71 495 0.0 844
Msa0408300 MtrunA17_Chr2g0293351 27.700 426 235 6 4 421 78 438 1.86e-48 171
Msa0408300 MtrunA17_Chr3g0079271 29.976 417 234 3 4 420 156 514 1.15e-46 169
Msa0408300 MtrunA17_Chr1g0205221 30.617 405 220 8 5 409 168 511 4.71e-40 150
Msa0408300 MtrunA17_Chr2g0293361 36.190 210 134 0 212 421 34 243 1.67e-39 142
Msa0408300 MtrunA17_Chr2g0293371 26.877 413 229 6 17 421 1 348 2.73e-39 144
Msa0408300 MtrunA17_Chr1g0150001 26.118 425 238 8 4 421 107 462 3.06e-34 133
Msa0408300 MtrunA17_Chr1g0150031 32.500 160 108 0 262 421 3 162 1.47e-27 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0408300 AT5G54860.1 64.235 425 147 2 4 428 71 490 0.0 548
Msa0408300 AT2G32040.2 29.630 405 226 7 5 409 51 396 1.12e-37 142
Msa0408300 AT2G32040.1 29.383 405 227 7 5 409 182 527 6.61e-37 142
Msa0408300 AT1G04570.2 33.962 212 140 0 209 420 137 348 3.33e-35 134
Msa0408300 AT1G64890.1 34.906 212 138 0 212 423 221 432 3.00e-34 133
Msa0408300 AT1G04570.1 33.962 212 140 0 209 420 285 496 5.76e-34 133
Msa0408300 AT1G79710.2 25.412 425 241 9 4 421 106 461 8.24e-33 129
Msa0408300 AT1G79710.1 25.412 425 241 9 4 421 106 461 8.24e-33 129
Msa0408300 AT5G10820.1 25.829 422 244 8 4 420 114 471 2.99e-32 128
Msa0408300 AT2G33280.2 32.243 214 145 0 212 425 107 320 5.66e-32 125
Msa0408300 AT2G33280.3 32.243 214 145 0 212 425 181 394 3.42e-31 124
Msa0408300 AT2G33280.1 32.243 214 145 0 212 425 289 502 6.72e-31 124
Msa0408300 AT5G25050.1 29.612 206 142 1 219 421 252 457 1.13e-26 112
Msa0408300 AT5G25040.5 27.442 215 153 1 210 421 94 308 1.62e-26 109
Msa0408300 AT5G25040.4 27.442 215 153 1 210 421 241 455 1.13e-25 109
Msa0408300 AT5G25040.2 32.278 158 107 0 264 421 323 480 1.44e-24 106
Msa0408300 AT5G25040.1 26.230 183 132 1 210 389 241 423 1.73e-17 84.7
Msa0408300 AT1G79710.3 21.547 362 208 9 4 358 106 398 1.57e-15 78.6

Find 100 sgRNAs with CRISPR-Local

Find 393 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGATTGTATCCCGATTAA+AGG 0.188248 3_2:-47885384 Msa0408300:CDS
TTGGAGGTCTCCTGCAAATT+TGG 0.210403 3_2:+47884539 None:intergenic
GATGCACCTGTTGCTTCTTT+TGG 0.267349 3_2:+47879739 None:intergenic
CTCCAGAATCTTCGATTTGC+TGG 0.283430 3_2:+47884197 None:intergenic
ATGCCTTTCCTAATCTTATC+TGG 0.289468 3_2:-47879967 Msa0408300:CDS
ATCCGCTTACTTCCTTTAAT+CGG 0.294910 3_2:+47885372 None:intergenic
TTTGGCTCGGCACTTGTTGA+TGG 0.295783 3_2:-47883072 Msa0408300:CDS
TTCTAAGCGTCATATGCTTT+AGG 0.310369 3_2:+47883286 None:intergenic
TGTAAATTGGAAAATATTAG+AGG 0.316689 3_2:-47879618 Msa0408300:three_prime_UTR
TTGGTCAGGGCCAAATTTGC+AGG 0.328122 3_2:-47884549 Msa0408300:intron
GGAATATGCGGGAGTTTGTT+AGG 0.329268 3_2:-47884486 Msa0408300:CDS
AATAAAGTTCCTTCAATTCC+TGG 0.338588 3_2:+47879931 None:intergenic
ATCATAAATTGCTTTCTTCA+AGG 0.340461 3_2:+47884140 None:intergenic
TACCAGCAAATCGAAGATTC+TGG 0.353963 3_2:-47884199 Msa0408300:CDS
TTGATGAATACCATTGGAAT+TGG 0.356869 3_2:-47879698 Msa0408300:three_prime_UTR
TCGCCTTTGGTGTACCAGAT+AGG 0.358572 3_2:-47883107 Msa0408300:CDS
GATAGGGTTATGGTGCTCTT+TGG 0.362387 3_2:-47883090 Msa0408300:CDS
GAATAAGACTGTTGAAAGAT+TGG 0.368387 3_2:+47883413 None:intergenic
AAAGCTCGAAGCATCATTCT+TGG 0.370525 3_2:-47883370 Msa0408300:CDS
TCTATATTGAACATAGATTC+AGG 0.374425 3_2:-47879841 Msa0408300:CDS
AAGTAAGCGGATTTCGTACT+TGG 0.393076 3_2:-47885361 Msa0408300:CDS
ATTGGTTACCTCAAAATCAT+TGG 0.394424 3_2:+47884096 None:intergenic
ATCATTATCTTGGTCTTCAA+TGG 0.396384 3_2:-47884517 Msa0408300:CDS
ATCTTGGTCTTCAATGGCTG+TGG 0.396603 3_2:-47884511 Msa0408300:CDS
TCCGCTTACTTCCTTTAATC+GGG 0.406523 3_2:+47885373 None:intergenic
AAGAGCACCATAACCCTATC+TGG 0.416214 3_2:+47883093 None:intergenic
GAATATGCGGGAGTTTGTTA+GGG 0.418448 3_2:-47884485 Msa0408300:CDS
AAGCTCGAAGCATCATTCTT+GGG 0.419923 3_2:-47883369 Msa0408300:CDS
GTACGCGTTGTTGGTTGGTT+AGG 0.423916 3_2:-47883342 Msa0408300:CDS
TTGGGGACGGTACGCGTTGT+TGG 0.428599 3_2:-47883351 Msa0408300:CDS
TGGTGTACCAGATAGGGTTA+TGG 0.430972 3_2:-47883100 Msa0408300:CDS
GCAAAGGATTTGCATACAAA+TGG 0.433365 3_2:-47884327 Msa0408300:CDS
ATCAGAAACAGAAAAGCAAT+TGG 0.433826 3_2:+47879763 None:intergenic
TTGAAGACCAAGATAATGAT+TGG 0.443377 3_2:+47884520 None:intergenic
AATAAGACTGTTGAAAGATT+GGG 0.450409 3_2:+47883414 None:intergenic
CTGTGCTCTCCCTTGTACCA+TGG 0.460291 3_2:-47885329 Msa0408300:CDS
CTATGCCCTCCAGGAATTGA+AGG 0.462869 3_2:-47879940 Msa0408300:CDS
CGCCTTTGGTGTACCAGATA+GGG 0.464246 3_2:-47883106 Msa0408300:CDS
TTTCATGTCAATAAACAACT+TGG 0.464904 3_2:-47879902 Msa0408300:CDS
ATAGTTGTCCAGATAAGATT+AGG 0.465222 3_2:+47879959 None:intergenic
GAGACCTCCAATCATTATCT+TGG 0.465996 3_2:-47884527 Msa0408300:CDS
TGGAGGACAGACCTATGTCT+TGG 0.476709 3_2:-47883461 Msa0408300:intron
TTCTTGACTGTGCAAAACTT+AGG 0.479731 3_2:-47885252 Msa0408300:CDS
AAATTGCTTTCTTCAAGGAA+TGG 0.479777 3_2:+47884145 None:intergenic
TCTGGAGAAAGGAGATTCCT+TGG 0.489789 3_2:-47884181 Msa0408300:CDS
CTAAAATAAACCATGGTACA+AGG 0.490097 3_2:+47885319 None:intergenic
GGAAAATATTAGAGGAAATG+AGG 0.496578 3_2:-47879610 Msa0408300:three_prime_UTR
CTGATACCAAAAGAAGCAAC+AGG 0.498367 3_2:-47879745 Msa0408300:CDS
GGTTATGGTGCTCTTTGGCT+CGG 0.505871 3_2:-47883085 Msa0408300:CDS
CAGGTATGCTCATGTTGCGT+TGG 0.512392 3_2:-47883175 Msa0408300:CDS
TCTGGACAACTATGCCCTCC+AGG 0.515434 3_2:-47879949 Msa0408300:CDS
TCTTGGTCTTCAATGGCTGT+GGG 0.522835 3_2:-47884510 Msa0408300:CDS
AACAACTTGGGAACAACGAT+AGG 0.523273 3_2:-47879889 Msa0408300:CDS
GGACGGTACGCGTTGTTGGT+TGG 0.528967 3_2:-47883347 Msa0408300:CDS
TTCATGTCAATAAACAACTT+GGG 0.529203 3_2:-47879901 Msa0408300:CDS
TGCAGATTGTCGTTGTGTCT+AGG 0.532529 3_2:-47883137 Msa0408300:CDS
AAATCGAAGATTCTGGAGAA+AGG 0.536470 3_2:-47884192 Msa0408300:CDS
CATGATAATAACTGTATGCA+AGG 0.547185 3_2:+47884405 None:intergenic
TAGTTATTGATGAATACCAT+TGG 0.549832 3_2:-47879704 Msa0408300:three_prime_UTR
AGTTGAGGATTATATTGCAA+AGG 0.550493 3_2:-47884343 Msa0408300:CDS
ATGGAACCACTTTGTTGCCA+AGG 0.553047 3_2:+47884164 None:intergenic
CTTGTCATATCTTACAGCCT+CGG 0.554473 3_2:+47885191 None:intergenic
GCGTCATATGCTTTAGGTGA+CGG 0.557890 3_2:+47883292 None:intergenic
AGTCTTATTCTACTACGAAA+CGG 0.561877 3_2:-47883400 Msa0408300:CDS
GCACAGTCAAGAATACCATC+AGG 0.566177 3_2:+47885262 None:intergenic
TTGCATACAAATGGTAGTAG+TGG 0.583089 3_2:-47884318 Msa0408300:CDS
AATATGCGGGAGTTTGTTAG+GGG 0.585466 3_2:-47884484 Msa0408300:CDS
AAAGATTGGGAACAGTAATG+TGG 0.587892 3_2:+47883427 None:intergenic
GGTTGGTTAGGACTTATGCT+CGG 0.594212 3_2:-47883330 Msa0408300:CDS
TGGGAACAGTAATGTGGGCA+AGG 0.597103 3_2:+47883433 None:intergenic
ACAACTTGGGAACAACGATA+GGG 0.598636 3_2:-47879888 Msa0408300:CDS
GAATTCAACATGGCACCTGA+TGG 0.602006 3_2:-47885277 Msa0408300:CDS
AGCTCGAAGCATCATTCTTG+GGG 0.605840 3_2:-47883368 Msa0408300:CDS
ATCAACAACAACATCTGCCA+TGG 0.606162 3_2:+47885224 None:intergenic
CGAAGCATCATTCTTGGGGA+CGG 0.607115 3_2:-47883364 Msa0408300:CDS
ATGGCTGTGGGAGGAATATG+CGG 0.607957 3_2:-47884498 Msa0408300:CDS
TGTCCAGATAAGATTAGGAA+AGG 0.608005 3_2:+47879964 None:intergenic
TATCAACTATCAAAATACCT+AGG 0.608426 3_2:+47879651 None:intergenic
GTGTGTATAACCAATTCCAA+TGG 0.609701 3_2:+47879688 None:intergenic
TAAAATAAACCATGGTACAA+GGG 0.610741 3_2:+47885320 None:intergenic
AAGATTGGGAACAGTAATGT+GGG 0.612894 3_2:+47883428 None:intergenic
CAACCTTGAGGAATTCAACA+TGG 0.615312 3_2:-47885287 Msa0408300:CDS
TGGTCTTCAATGGCTGTGGG+AGG 0.618541 3_2:-47884507 Msa0408300:CDS
GTGCCATGTTGAATTCCTCA+AGG 0.618903 3_2:+47885284 None:intergenic
AAGACCAAGATAATGATTGG+AGG 0.620304 3_2:+47884523 None:intergenic
CTTAAACCTAAAATAAACCA+TGG 0.629672 3_2:+47885312 None:intergenic
TAGGTGACGGTTATAAACGA+AGG 0.632468 3_2:+47883305 None:intergenic
GAGATTCCTTGGCAACAAAG+TGG 0.632737 3_2:-47884170 Msa0408300:CDS
AACCCTATCTGGTACACCAA+AGG 0.632946 3_2:+47883104 None:intergenic
TAGGTTTAAGTTCAACCTTG+AGG 0.633543 3_2:-47885299 Msa0408300:CDS
AAGTTCCTTCAATTCCTGGA+GGG 0.637778 3_2:+47879935 None:intergenic
TGGCTGTGGGAGGAATATGC+GGG 0.640200 3_2:-47884497 Msa0408300:CDS
AATCTGCAGAAGATTCAAGA+AGG 0.650496 3_2:+47883152 None:intergenic
TAAAACTTCGCTATTTACAG+AGG 0.655075 3_2:+47884365 None:intergenic
TCCCGATTAAAGGAAGTAAG+CGG 0.662912 3_2:-47885374 Msa0408300:CDS
GCAAAACTTAGGATCAGCCA+TGG 0.664884 3_2:-47885241 Msa0408300:CDS
AAAGTTCCTTCAATTCCTGG+AGG 0.671510 3_2:+47879934 None:intergenic
CTTATTCTACTACGAAACGG+AGG 0.704156 3_2:-47883397 Msa0408300:CDS
TGTTGATGCGATGATAGCCG+AGG 0.715574 3_2:-47885208 Msa0408300:CDS
ATATGCGGGAGTTTGTTAGG+GGG 0.728603 3_2:-47884483 Msa0408300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAATATAATTATATATGAA+TGG + chr3_2:47880941-47880960 None:intergenic 10.0%
!!! TTTTTGTAAGTTAAAATAAT+TGG + chr3_2:47881190-47881209 None:intergenic 10.0%
!!! AAAAGTATATAAAAATATAG+AGG + chr3_2:47883317-47883336 None:intergenic 10.0%
!!! AAACTATAATGTTTTATATA+GGG - chr3_2:47884461-47884480 Msa0408300:CDS 10.0%
!!! AAAGTAGATATTTGAAATTT+TGG - chr3_2:47880853-47880872 Msa0408300:intron 15.0%
!! ACTAATAAAAAGTAATGTTT+CGG - chr3_2:47881280-47881299 Msa0408300:intron 15.0%
!!! ATAAAGTAATTTTTAGCATT+CGG - chr3_2:47882683-47882702 Msa0408300:intron 15.0%
!!! AAAATTTAGAATATCATCTA+TGG - chr3_2:47883194-47883213 Msa0408300:intron 15.0%
!!! AAATTTAGAATATCATCTAT+GGG - chr3_2:47883195-47883214 Msa0408300:intron 15.0%
!!! TGTGATTATATTGATTTTAT+GGG + chr3_2:47883730-47883749 None:intergenic 15.0%
!!! GAGATTTTAAAAGATTATTT+TGG + chr3_2:47883786-47883805 None:intergenic 15.0%
!! AAAAAAAATACTATCTTTCA+GGG + chr3_2:47884257-47884276 None:intergenic 15.0%
!! AAAAAAAAATACTATCTTTC+AGG + chr3_2:47884258-47884277 None:intergenic 15.0%
!!! ATAGTATTTTTTTTTGCTTA+TGG - chr3_2:47884263-47884282 Msa0408300:CDS 15.0%
!!! CAAACTATAATGTTTTATAT+AGG - chr3_2:47884460-47884479 Msa0408300:CDS 15.0%
!! CAAATATCTACTTTAATGAT+TGG + chr3_2:47880847-47880866 None:intergenic 20.0%
!!! CTGTTTACTTTTTAAGATTA+TGG - chr3_2:47880876-47880895 Msa0408300:intron 20.0%
!!! ATGGAGATTATCTTTTTAAT+TGG + chr3_2:47881150-47881169 None:intergenic 20.0%
!!! TATGTTCTTCTTTTTATTAC+AGG - chr3_2:47881728-47881747 Msa0408300:intron 20.0%
!!! AAAAGATGATATCTTCATTT+TGG - chr3_2:47882006-47882025 Msa0408300:intron 20.0%
!! TATTCTTAACCGAATATATT+TGG + chr3_2:47882129-47882148 None:intergenic 20.0%
!! ATACATAATATTAACCATCA+AGG - chr3_2:47882201-47882220 Msa0408300:intron 20.0%
!! TACATAATATTAACCATCAA+GGG - chr3_2:47882202-47882221 Msa0408300:intron 20.0%
!! TTAAAAAAATGATTCGCTTT+GGG + chr3_2:47882486-47882505 None:intergenic 20.0%
!! TTTAAAAAAATGATTCGCTT+TGG + chr3_2:47882487-47882506 None:intergenic 20.0%
!!! TAAAGTAATTTTTAGCATTC+GGG - chr3_2:47882684-47882703 Msa0408300:intron 20.0%
!!! TTTTTCTCGATTTAAAAACA+TGG + chr3_2:47882768-47882787 None:intergenic 20.0%
!! TAGAAATACTTATGCATATA+TGG - chr3_2:47883499-47883518 Msa0408300:intron 20.0%
!! TTAATCTCTCTATGTTTATT+GGG + chr3_2:47883680-47883699 None:intergenic 20.0%
!! TTTAATCTCTCTATGTTTAT+TGG + chr3_2:47883681-47883700 None:intergenic 20.0%
!!! GTGTGATTATATTGATTTTA+TGG + chr3_2:47883731-47883750 None:intergenic 20.0%
!!! CTTGCTTTTTTTTTAATCAA+TGG + chr3_2:47883896-47883915 None:intergenic 20.0%
!! ACTCCAAACAAAAATAAAAA+AGG - chr3_2:47883917-47883936 Msa0408300:intron 20.0%
!!! AGTCCTTTTTTATTTTTGTT+TGG + chr3_2:47883923-47883942 None:intergenic 20.0%
!!! ATATTTTCCACTTTGTAAAT+TGG - chr3_2:47885291-47885310 Msa0408300:CDS 20.0%
!!! ATATTTTCCAATTTACAAAG+TGG + chr3_2:47885301-47885320 None:intergenic 20.0%
!! TGTAAATTGGAAAATATTAG+AGG - chr3_2:47885304-47885323 Msa0408300:CDS 20.0%
! TAAAATAAACCATGGTACAA+GGG + chr3_2:47879605-47879624 None:intergenic 25.0%
! CTTAAACCTAAAATAAACCA+TGG + chr3_2:47879613-47879632 None:intergenic 25.0%
! TTATCTTGGACAATGAAATT+AGG + chr3_2:47879776-47879795 None:intergenic 25.0%
! TTGATCTAACAACTGAAATA+AGG + chr3_2:47879940-47879959 None:intergenic 25.0%
! AACACTTAATCATAGAGAAT+AGG + chr3_2:47880346-47880365 None:intergenic 25.0%
! TAGTACAAGAAAAAGAAAGA+AGG - chr3_2:47880669-47880688 Msa0408300:intron 25.0%
! AGTACAAGAAAAAGAAAGAA+GGG - chr3_2:47880670-47880689 Msa0408300:intron 25.0%
! ATCATAAATTGCTTTCTTCA+AGG + chr3_2:47880785-47880804 None:intergenic 25.0%
!!! TCCAATGTTTGTGTTTTTAT+CGG - chr3_2:47881065-47881084 Msa0408300:intron 25.0%
!!! CTTTTTAATTGGCTGAAAAT+TGG + chr3_2:47881139-47881158 None:intergenic 25.0%
! AATAATTGGCCATAATGTAA+AGG + chr3_2:47881176-47881195 None:intergenic 25.0%
! TTCAAATACATTATCTACCA+AGG - chr3_2:47881252-47881271 Msa0408300:intron 25.0%
! TCAAATACATTATCTACCAA+GGG - chr3_2:47881253-47881272 Msa0408300:intron 25.0%
! AATAAGACTGTTGAAAGATT+GGG + chr3_2:47881511-47881530 None:intergenic 25.0%
! AATATTATGTATGTGTGCTT+TGG + chr3_2:47882193-47882212 None:intergenic 25.0%
! ACATAATATTAACCATCAAG+GGG - chr3_2:47882203-47882222 Msa0408300:intron 25.0%
! TGAACAGTTTCAAACAAAAA+GGG + chr3_2:47882341-47882360 None:intergenic 25.0%
! TGTAGAAAACACAATACAAA+AGG - chr3_2:47882418-47882437 Msa0408300:intron 25.0%
! GTAGAAAACACAATACAAAA+GGG - chr3_2:47882419-47882438 Msa0408300:intron 25.0%
!!! AAAGTAATTTTTAGCATTCG+GGG - chr3_2:47882685-47882704 Msa0408300:intron 25.0%
!!! AGATTATGAGAATTTTGAGT+GGG - chr3_2:47883109-47883128 Msa0408300:CDS 25.0%
! TAATCTCTCTATGTTTATTG+GGG + chr3_2:47883679-47883698 None:intergenic 25.0%
!!! TAGAGATACATTTTGACTTA+GGG + chr3_2:47883822-47883841 None:intergenic 25.0%
!!! TTAGAGATACATTTTGACTT+AGG + chr3_2:47883823-47883842 None:intergenic 25.0%
!!! CAATGGTTTTTTGTTTGTAT+AGG + chr3_2:47883879-47883898 None:intergenic 25.0%
! AAACTTAACTCACAAAGTAA+AGG + chr3_2:47884001-47884020 None:intergenic 25.0%
! ATTCTCATGAAAATGATACA+CGG + chr3_2:47884159-47884178 None:intergenic 25.0%
! TAAAGGGACTAATTCAATAT+GGG + chr3_2:47884327-47884346 None:intergenic 25.0%
! TTAAAGGGACTAATTCAATA+TGG + chr3_2:47884328-47884347 None:intergenic 25.0%
!! ACCGAAAAAGTGTATATTAA+AGG - chr3_2:47884490-47884509 Msa0408300:CDS 25.0%
!!! CCCTTTAATATACACTTTTT+CGG + chr3_2:47884494-47884513 None:intergenic 25.0%
!! CCGAAAAAGTGTATATTAAA+GGG - chr3_2:47884491-47884510 Msa0408300:CDS 25.0%
! TGAAGCATAATGATTTGATA+TGG - chr3_2:47884631-47884650 Msa0408300:intron 25.0%
! AAGGATGTAACACAAAAAAA+TGG + chr3_2:47884658-47884677 None:intergenic 25.0%
!!! ATTTTTTTGTGTTACATCCT+TGG - chr3_2:47884657-47884676 Msa0408300:intron 25.0%
! TTTCATGTCAATAAACAACT+TGG - chr3_2:47885020-47885039 Msa0408300:intron 25.0%
! TTCATGTCAATAAACAACTT+GGG - chr3_2:47885021-47885040 Msa0408300:intron 25.0%
! TCTATATTGAACATAGATTC+AGG - chr3_2:47885081-47885100 Msa0408300:intron 25.0%
! TAGTTATTGATGAATACCAT+TGG - chr3_2:47885218-47885237 Msa0408300:CDS 25.0%
! TATCAACTATCAAAATACCT+AGG + chr3_2:47885274-47885293 None:intergenic 25.0%
CTAAAATAAACCATGGTACA+AGG + chr3_2:47879606-47879625 None:intergenic 30.0%
!! CTTGTACCATGGTTTATTTT+AGG - chr3_2:47879604-47879623 Msa0408300:three_prime_UTR 30.0%
CAATATGCAACAGTTTATCT+TGG + chr3_2:47879790-47879809 None:intergenic 30.0%
AGAAATACATCCATCATAGA+AGG + chr3_2:47879975-47879994 None:intergenic 30.0%
CACATACAATGCAAAGAAAT+TGG + chr3_2:47880009-47880028 None:intergenic 30.0%
TCAAATTAGTCAATCCAAAC+AGG + chr3_2:47880103-47880122 None:intergenic 30.0%
! AATGAGTTGAAAACAGCTTA+TGG + chr3_2:47880194-47880213 None:intergenic 30.0%
!!! AGCTGTTTTTGTAAGCTATT+CGG + chr3_2:47880230-47880249 None:intergenic 30.0%
TGATTAAGTGTTTGCTTTGT+TGG - chr3_2:47880354-47880373 Msa0408300:intron 30.0%
TTGAAGACCAAGATAATGAT+TGG + chr3_2:47880405-47880424 None:intergenic 30.0%
! ATCATTATCTTGGTCTTCAA+TGG - chr3_2:47880405-47880424 Msa0408300:intron 30.0%
CATGATAATAACTGTATGCA+AGG + chr3_2:47880520-47880539 None:intergenic 30.0%
! ATTATCATGCTTTTCTGTGA+AGG - chr3_2:47880531-47880550 Msa0408300:intron 30.0%
TAAAACTTCGCTATTTACAG+AGG + chr3_2:47880560-47880579 None:intergenic 30.0%
!!! AAATAGCGAAGTTTTAGTTG+AGG - chr3_2:47880564-47880583 Msa0408300:intron 30.0%
AGTTGAGGATTATATTGCAA+AGG - chr3_2:47880579-47880598 Msa0408300:intron 30.0%
AAATTGCTTTCTTCAAGGAA+TGG + chr3_2:47880780-47880799 None:intergenic 30.0%
ATTGGTTACCTCAAAATCAT+TGG + chr3_2:47880829-47880848 None:intergenic 30.0%
ACCGATAAAAACACAAACAT+TGG + chr3_2:47881069-47881088 None:intergenic 30.0%
ACAAACCTTTAATGTCTACA+TGG + chr3_2:47881113-47881132 None:intergenic 30.0%
! CTTTTTATTAGTTGAACCCT+TGG + chr3_2:47881272-47881291 None:intergenic 30.0%
! ATTATTAGCTTCATTCTGTG+AGG + chr3_2:47881392-47881411 None:intergenic 30.0%
! AGAATCTCTGTTTTATGTTG+TGG - chr3_2:47881441-47881460 Msa0408300:intron 30.0%
GAATAAGACTGTTGAAAGAT+TGG + chr3_2:47881512-47881531 None:intergenic 30.0%
!! AGTCTTATTCTACTACGAAA+CGG - chr3_2:47881522-47881541 Msa0408300:intron 30.0%
AATTCTCATGTAAGCAACTA+AGG - chr3_2:47881660-47881679 Msa0408300:intron 30.0%
!! GCAACTAAGGATTGTTTTAT+TGG - chr3_2:47881673-47881692 Msa0408300:intron 30.0%
!! CTAAGGATTGTTTTATTGGT+TGG - chr3_2:47881677-47881696 Msa0408300:intron 30.0%
AGAGATTGTATTCTTCTTTG+TGG + chr3_2:47882233-47882252 None:intergenic 30.0%
GAACAGTTTCAAACAAAAAG+GGG + chr3_2:47882340-47882359 None:intergenic 30.0%
GTGAACAGTTTCAAACAAAA+AGG + chr3_2:47882342-47882361 None:intergenic 30.0%
!!! TTTGTGTTTTGAAAGTGCAT+GGG + chr3_2:47882382-47882401 None:intergenic 30.0%
! TTCTTACTGATTGAGTGAAA+TGG - chr3_2:47882624-47882643 Msa0408300:intron 30.0%
!!! AAGTAATTTTTAGCATTCGG+GGG - chr3_2:47882686-47882705 Msa0408300:intron 30.0%
TTAAAAACATGGCTACAAGA+CGG + chr3_2:47882757-47882776 None:intergenic 30.0%
! AAGAATGGATCTTGGTAATT+AGG + chr3_2:47882886-47882905 None:intergenic 30.0%
!! CGATTTTGAAGGTTAAGAAT+AGG + chr3_2:47882963-47882982 None:intergenic 30.0%
ATTCTTAACCTTCAAAATCG+TGG - chr3_2:47882963-47882982 Msa0408300:intron 30.0%
AACGAGAAAATGAAGAAGTA+GGG + chr3_2:47883045-47883064 None:intergenic 30.0%
! GAGATTATGAGAATTTTGAG+TGG - chr3_2:47883108-47883127 Msa0408300:CDS 30.0%
TTAGAATATCATCTATGGGA+AGG - chr3_2:47883199-47883218 Msa0408300:intron 30.0%
TAAATGAGGTAGAAGAGAAA+AGG - chr3_2:47883251-47883270 Msa0408300:intron 30.0%
AGAAAAGGACGTATTTGTTT+GGG - chr3_2:47883266-47883285 Msa0408300:intron 30.0%
!!! TAAATATCACGTCACTTTTG+TGG + chr3_2:47883340-47883359 None:intergenic 30.0%
TCATGCATTTCATAGTTACT+TGG - chr3_2:47883534-47883553 Msa0408300:intron 30.0%
TAAAACGAGTAGATGAACTA+TGG - chr3_2:47883585-47883604 Msa0408300:intron 30.0%
!!! CAAAGTCTTTTAAAATCTGC+AGG - chr3_2:47883750-47883769 Msa0408300:intron 30.0%
!!! AGAGATACATTTTGACTTAG+GGG + chr3_2:47883821-47883840 None:intergenic 30.0%
GCAAGGAAATTTAGATTTCT+GGG + chr3_2:47883968-47883987 None:intergenic 30.0%
ACAAAGTAAAGGTTCAAATG+TGG + chr3_2:47883990-47884009 None:intergenic 30.0%
CACTTGTTCTAATGAATAGT+TGG + chr3_2:47884062-47884081 None:intergenic 30.0%
CTATCTTTCAGGGATTAAAA+AGG + chr3_2:47884247-47884266 None:intergenic 30.0%
TACAAGAACTAATTCAGCAT+AGG - chr3_2:47884400-47884419 Msa0408300:CDS 30.0%
!!! TAGTTTGTTCCTCATTGTTT+TGG + chr3_2:47884447-47884466 None:intergenic 30.0%
!!! TTTTTCAAGCACATCTCAAT+AGG - chr3_2:47884559-47884578 Msa0408300:intron 30.0%
! AATAGGTATTACTAGCTTAG+AGG - chr3_2:47884576-47884595 Msa0408300:intron 30.0%
! ATAGGTATTACTAGCTTAGA+GGG - chr3_2:47884577-47884596 Msa0408300:intron 30.0%
TCCAAAGAGAAAAATCAGAA+GGG + chr3_2:47884919-47884938 None:intergenic 30.0%
TTCCAAAGAGAAAAATCAGA+AGG + chr3_2:47884920-47884939 None:intergenic 30.0%
! TCTCTTTGGAAAAAAAATGC+AGG - chr3_2:47884929-47884948 Msa0408300:intron 30.0%
ATAGTTGTCCAGATAAGATT+AGG + chr3_2:47884966-47884985 None:intergenic 30.0%
AATAAAGTTCCTTCAATTCC+TGG + chr3_2:47884994-47885013 None:intergenic 30.0%
! TCTTTTGACAATCTTCTGTT+AGG - chr3_2:47885105-47885124 Msa0408300:intron 30.0%
ATCAGAAACAGAAAAGCAAT+TGG + chr3_2:47885162-47885181 None:intergenic 30.0%
TTGATGAATACCATTGGAAT+TGG - chr3_2:47885224-47885243 Msa0408300:CDS 30.0%
! CACTTCAAATAGTTTTTCCT+AGG - chr3_2:47885254-47885273 Msa0408300:CDS 30.0%
GGAAAATATTAGAGGAAATG+AGG - chr3_2:47885312-47885331 Msa0408300:CDS 30.0%
TCTGATTGTATCCCGATTAA+AGG - chr3_2:47879538-47879557 Msa0408300:three_prime_UTR 35.0%
ATCCGCTTACTTCCTTTAAT+CGG + chr3_2:47879553-47879572 None:intergenic 35.0%
! TAGGTTTAAGTTCAACCTTG+AGG - chr3_2:47879623-47879642 Msa0408300:three_prime_UTR 35.0%
TTCTTGACTGTGCAAAACTT+AGG - chr3_2:47879670-47879689 Msa0408300:three_prime_UTR 35.0%
TTGGAAGCTTATCTATATGC+AGG + chr3_2:47879822-47879841 None:intergenic 35.0%
CTTCCAATCTCTCAATACTA+CGG - chr3_2:47879835-47879854 Msa0408300:CDS 35.0%
GTCACAAAATTAAAGCGATC+TGG + chr3_2:47879891-47879910 None:intergenic 35.0%
CATTTGTCAACCTTCTATGA+TGG - chr3_2:47879962-47879981 Msa0408300:CDS 35.0%
! TTTGCGGAGTTCTCTTTTTA+AGG - chr3_2:47880071-47880090 Msa0408300:intron 35.0%
!!! GCTGTTTTTGTAAGCTATTC+GGG + chr3_2:47880229-47880248 None:intergenic 35.0%
TCATAGAGAATAGGCATGTT+TGG + chr3_2:47880337-47880356 None:intergenic 35.0%
AAGACCAAGATAATGATTGG+AGG + chr3_2:47880402-47880421 None:intergenic 35.0%
GCAAAGGATTTGCATACAAA+TGG - chr3_2:47880595-47880614 Msa0408300:intron 35.0%
TTGCATACAAATGGTAGTAG+TGG - chr3_2:47880604-47880623 Msa0408300:intron 35.0%
! AAATCGAAGATTCTGGAGAA+AGG - chr3_2:47880730-47880749 Msa0408300:intron 35.0%
! TTAGACAGCCAATGATTTTG+AGG - chr3_2:47880818-47880837 Msa0408300:intron 35.0%
TATGAAATGTGCTCTCAACA+AGG + chr3_2:47880908-47880927 None:intergenic 35.0%
CCTTTAATGTCTACATGGTT+CGG + chr3_2:47881108-47881127 None:intergenic 35.0%
AATTGGCCATAATGTAAAGG+AGG + chr3_2:47881173-47881192 None:intergenic 35.0%
AACAAACACACACTCTAATG+AGG + chr3_2:47881352-47881371 None:intergenic 35.0%
! ATCTCTGTTTTATGTTGTGG+AGG - chr3_2:47881444-47881463 Msa0408300:intron 35.0%
AAGATTGGGAACAGTAATGT+GGG + chr3_2:47881497-47881516 None:intergenic 35.0%
AAAGATTGGGAACAGTAATG+TGG + chr3_2:47881498-47881517 None:intergenic 35.0%
TTCTAAGCGTCATATGCTTT+AGG + chr3_2:47881639-47881658 None:intergenic 35.0%
AATCTGCAGAAGATTCAAGA+AGG + chr3_2:47881773-47881792 None:intergenic 35.0%
TCTAGGAAAAATATCGCCTT+TGG - chr3_2:47881802-47881821 Msa0408300:intron 35.0%
! TTTTTGCTTAAGCATGTGCA+TGG - chr3_2:47881926-47881945 Msa0408300:intron 35.0%
!!! ATTCGTGCTGATTTTCATGT+TGG + chr3_2:47881973-47881992 None:intergenic 35.0%
AACATGAAAATCAGCACGAA+TGG - chr3_2:47881972-47881991 Msa0408300:intron 35.0%
GTGAGCAGACCAAATATATT+CGG - chr3_2:47882117-47882136 Msa0408300:intron 35.0%
ATTATGTATGTGTGCTTTGG+TGG + chr3_2:47882190-47882209 None:intergenic 35.0%
!!! CTTTGTGTTTTGAAAGTGCA+TGG + chr3_2:47882383-47882402 None:intergenic 35.0%
! AAGAAGTTTTTCCAACCCAT+AGG - chr3_2:47882513-47882532 Msa0408300:intron 35.0%
! AGAAGTTTTTCCAACCCATA+GGG - chr3_2:47882514-47882533 Msa0408300:intron 35.0%
ACATTATACCATTGCCCTAT+GGG + chr3_2:47882531-47882550 None:intergenic 35.0%
TACATTATACCATTGCCCTA+TGG + chr3_2:47882532-47882551 None:intergenic 35.0%
AATGTAGAAGAGAGAGATTG+AGG - chr3_2:47882546-47882565 Msa0408300:intron 35.0%
ATGTAGAAGAGAGAGATTGA+GGG - chr3_2:47882547-47882566 Msa0408300:intron 35.0%
CTGATTGAGTGAAATGGTTT+AGG - chr3_2:47882630-47882649 Msa0408300:intron 35.0%
TAAAAACATGGCTACAAGAC+GGG + chr3_2:47882756-47882775 None:intergenic 35.0%
CTAGGTTTGGATATGAGTTT+GGG + chr3_2:47882791-47882810 None:intergenic 35.0%
ACTAGGTTTGGATATGAGTT+TGG + chr3_2:47882792-47882811 None:intergenic 35.0%
GTTTGTAGAAGAATGGATCT+TGG + chr3_2:47882894-47882913 None:intergenic 35.0%
! TACTCTGGTTTGTAGAAGAA+TGG + chr3_2:47882901-47882920 None:intergenic 35.0%
ATTCTTCTACAAACCAGAGT+AGG - chr3_2:47882900-47882919 Msa0408300:intron 35.0%
TACAAACCAGAGTAGGAAAT+GGG - chr3_2:47882907-47882926 Msa0408300:intron 35.0%
AACTTGATCATTTCCTACTC+TGG + chr3_2:47882993-47883012 None:intergenic 35.0%
GAACGAGAAAATGAAGAAGT+AGG + chr3_2:47883046-47883065 None:intergenic 35.0%
GAGTTGGAAAAATCAGTGAT+AGG - chr3_2:47883131-47883150 Msa0408300:CDS 35.0%
ATCAGTGATAGGAGAAAGAA+AGG - chr3_2:47883142-47883161 Msa0408300:CDS 35.0%
TCAATAACACCTCCAAGTAA+AGG + chr3_2:47883168-47883187 None:intergenic 35.0%
GAAGGCTATTCAGTTATTGA+GGG - chr3_2:47883217-47883236 Msa0408300:intron 35.0%
GAGAAAAGGACGTATTTGTT+TGG - chr3_2:47883265-47883284 Msa0408300:intron 35.0%
GAAAAGGACGTATTTGTTTG+GGG - chr3_2:47883267-47883286 Msa0408300:intron 35.0%
AAAAGGACGTATTTGTTTGG+GGG - chr3_2:47883268-47883287 Msa0408300:intron 35.0%
GAGTAGATGAACTATGGTTT+GGG - chr3_2:47883591-47883610 Msa0408300:intron 35.0%
!!! GAGATACATTTTGACTTAGG+GGG + chr3_2:47883820-47883839 None:intergenic 35.0%
GGCAAGGAAATTTAGATTTC+TGG + chr3_2:47883969-47883988 None:intergenic 35.0%
ACTTGTCTGTCATTCCATTT+GGG + chr3_2:47884033-47884052 None:intergenic 35.0%
AACTTGTCTGTCATTCCATT+TGG + chr3_2:47884034-47884053 None:intergenic 35.0%
ATAACCCACACATGAAATCT+CGG - chr3_2:47884085-47884104 Msa0408300:intron 35.0%
! TAGAGATGACACGTTTGTTA+AGG - chr3_2:47884125-47884144 Msa0408300:CDS 35.0%
! AGAGATGACACGTTTGTTAA+GGG - chr3_2:47884126-47884145 Msa0408300:CDS 35.0%
GGTAGCTTCATTGAGTTTAA+GGG + chr3_2:47884194-47884213 None:intergenic 35.0%
AGCATAGGCCAAATATTACA+CGG - chr3_2:47884415-47884434 Msa0408300:CDS 35.0%
GGTTTAGTCCGTGTAATATT+TGG + chr3_2:47884426-47884445 None:intergenic 35.0%
ATTTACTTTATCACTGCACC+TGG - chr3_2:47884529-47884548 Msa0408300:CDS 35.0%
TGCTTGAAAAAGATGAATCC+AGG + chr3_2:47884550-47884569 None:intergenic 35.0%
TTACATCCTTGGAGTCTATT+TGG - chr3_2:47884668-47884687 Msa0408300:intron 35.0%
ATCAATCCAAATAGACTCCA+AGG + chr3_2:47884677-47884696 None:intergenic 35.0%
ATGCCTTTCCTAATCTTATC+TGG - chr3_2:47884955-47884974 Msa0408300:intron 35.0%
TGTCCAGATAAGATTAGGAA+AGG + chr3_2:47884961-47884980 None:intergenic 35.0%
GTGTGTATAACCAATTCCAA+TGG + chr3_2:47885237-47885256 None:intergenic 35.0%
TCCCGATTAAAGGAAGTAAG+CGG - chr3_2:47879548-47879567 Msa0408300:three_prime_UTR 40.0%
TCCGCTTACTTCCTTTAATC+GGG + chr3_2:47879552-47879571 None:intergenic 40.0%
! AAGTAAGCGGATTTCGTACT+TGG - chr3_2:47879561-47879580 Msa0408300:three_prime_UTR 40.0%
CAACCTTGAGGAATTCAACA+TGG - chr3_2:47879635-47879654 Msa0408300:three_prime_UTR 40.0%
ATCAACAACAACATCTGCCA+TGG + chr3_2:47879701-47879720 None:intergenic 40.0%
CTTGTCATATCTTACAGCCT+CGG + chr3_2:47879734-47879753 None:intergenic 40.0%
TGCACTTCATGGAATCTTTG+CGG - chr3_2:47880055-47880074 Msa0408300:intron 40.0%
!!! TTTTAAGGCCTGTTCCTGTT+TGG - chr3_2:47880086-47880105 Msa0408300:intron 40.0%
TAGTCAATCCAAACAGGAAC+AGG + chr3_2:47880097-47880116 None:intergenic 40.0%
! AAGTGTTTGCTTTGTTGGTC+AGG - chr3_2:47880359-47880378 Msa0408300:intron 40.0%
! AGTGTTTGCTTTGTTGGTCA+GGG - chr3_2:47880360-47880379 Msa0408300:intron 40.0%
GAGACCTCCAATCATTATCT+TGG - chr3_2:47880395-47880414 Msa0408300:intron 40.0%
!! GAATATGCGGGAGTTTGTTA+GGG - chr3_2:47880437-47880456 Msa0408300:intron 40.0%
!! AATATGCGGGAGTTTGTTAG+GGG - chr3_2:47880438-47880457 Msa0408300:intron 40.0%
TACCAGCAAATCGAAGATTC+TGG - chr3_2:47880723-47880742 Msa0408300:intron 40.0%
CCGAACCATGTAGACATTAA+AGG - chr3_2:47881105-47881124 Msa0408300:intron 40.0%
CTCCATCCTCCTTTACATTA+TGG - chr3_2:47881164-47881183 Msa0408300:intron 40.0%
GCAAGGAAAAACCAAGACAT+AGG + chr3_2:47881475-47881494 None:intergenic 40.0%
CTTATTCTACTACGAAACGG+AGG - chr3_2:47881525-47881544 Msa0408300:intron 40.0%
! AAAGCTCGAAGCATCATTCT+TGG - chr3_2:47881552-47881571 Msa0408300:intron 40.0%
! AAGCTCGAAGCATCATTCTT+GGG - chr3_2:47881553-47881572 Msa0408300:intron 40.0%
! TAGGTGACGGTTATAAACGA+AGG + chr3_2:47881620-47881639 None:intergenic 40.0%
GAAGTTGAACAGTCTGTGAA+AGG + chr3_2:47882302-47882321 None:intergenic 40.0%
ATGGGTGAAAAAGGGAAACA+AGG + chr3_2:47882364-47882383 None:intergenic 40.0%
! GAAAGTGCATGGGTGAAAAA+GGG + chr3_2:47882372-47882391 None:intergenic 40.0%
! TGAAAGTGCATGGGTGAAAA+AGG + chr3_2:47882373-47882392 None:intergenic 40.0%
GTGGAAGAAGAGAGAAAACT+CGG - chr3_2:47882578-47882597 Msa0408300:intron 40.0%
TGGAAGAAGAGAGAAAACTC+GGG - chr3_2:47882579-47882598 Msa0408300:intron 40.0%
!!! TAATTTTTAGCATTCGGGGG+TGG - chr3_2:47882689-47882708 Msa0408300:intron 40.0%
!! AAGACGGGTTACAAGGATAT+AGG + chr3_2:47882741-47882760 None:intergenic 40.0%
TTTCTCGCTTTGACTAGGTT+TGG + chr3_2:47882804-47882823 None:intergenic 40.0%
CTACAAACCAGAGTAGGAAA+TGG - chr3_2:47882906-47882925 Msa0408300:intron 40.0%
TGAAGAAGTAGGGAGATGAT+TGG + chr3_2:47883035-47883054 None:intergenic 40.0%
AAAACCAACACTCGAGAGAA+AGG + chr3_2:47883068-47883087 None:intergenic 40.0%
!! TGAGAATTTTGAGTGGGAGT+TGG - chr3_2:47883115-47883134 Msa0408300:CDS 40.0%
GAGAAAGAAAGGCCTTTACT+TGG - chr3_2:47883153-47883172 Msa0408300:CDS 40.0%
AAAGAAAGGCCTTTACTTGG+AGG - chr3_2:47883156-47883175 Msa0408300:CDS 40.0%
GGAAGGCTATTCAGTTATTG+AGG - chr3_2:47883216-47883235 Msa0408300:intron 40.0%
! GGGACTTTGATGACTAAATG+AGG - chr3_2:47883237-47883256 Msa0408300:intron 40.0%
CGAGTAGATGAACTATGGTT+TGG - chr3_2:47883590-47883609 Msa0408300:intron 40.0%
! ATGAACTATGGTTTGGGTCA+GGG - chr3_2:47883597-47883616 Msa0408300:intron 40.0%
!!! TTTTGACTTAGGGGGTGTAT+TGG + chr3_2:47883812-47883831 None:intergenic 40.0%
GTAAAGGTTCAAATGTGGCA+AGG + chr3_2:47883985-47884004 None:intergenic 40.0%
! AGTTTTCACTCATCCCCAAA+TGG - chr3_2:47884016-47884035 Msa0408300:intron 40.0%
CTTGTCTGTCATTCCATTTG+GGG + chr3_2:47884032-47884051 None:intergenic 40.0%
CATCTCTACAATTCGATCAG+TGG + chr3_2:47884113-47884132 None:intergenic 40.0%
GGGTAGCTTCATTGAGTTTA+AGG + chr3_2:47884195-47884214 None:intergenic 40.0%
GGACAAAATTTAAGCCAGTG+AGG + chr3_2:47884226-47884245 None:intergenic 40.0%
CGGACTAAACCAAAACAATG+AGG - chr3_2:47884435-47884454 Msa0408300:CDS 40.0%
TCATAAGCTCTTCACTCTTC+AGG - chr3_2:47884797-47884816 Msa0408300:intron 40.0%
CATAAGCTCTTCACTCTTCA+GGG - chr3_2:47884798-47884817 Msa0408300:intron 40.0%
! GCCCTTCTGATTTTTCTCTT+TGG - chr3_2:47884915-47884934 Msa0408300:intron 40.0%
AAGTTCCTTCAATTCCTGGA+GGG + chr3_2:47884990-47885009 None:intergenic 40.0%
AAAGTTCCTTCAATTCCTGG+AGG + chr3_2:47884991-47885010 None:intergenic 40.0%
AACAACTTGGGAACAACGAT+AGG - chr3_2:47885033-47885052 Msa0408300:intron 40.0%
ACAACTTGGGAACAACGATA+GGG - chr3_2:47885034-47885053 Msa0408300:intron 40.0%
! ACAACGATAGGGTCTTTTGT+AGG - chr3_2:47885045-47885064 Msa0408300:intron 40.0%
CTGATACCAAAAGAAGCAAC+AGG - chr3_2:47885177-47885196 Msa0408300:intron 40.0%
GTGCCATGTTGAATTCCTCA+AGG + chr3_2:47879641-47879660 None:intergenic 45.0%
GAATTCAACATGGCACCTGA+TGG - chr3_2:47879645-47879664 Msa0408300:three_prime_UTR 45.0%
GCACAGTCAAGAATACCATC+AGG + chr3_2:47879663-47879682 None:intergenic 45.0%
GCAAAACTTAGGATCAGCCA+TGG - chr3_2:47879681-47879700 Msa0408300:three_prime_UTR 45.0%
! GGTCCGTAGTATTGAGAGAT+TGG + chr3_2:47879841-47879860 None:intergenic 45.0%
TCAATACTACGGACCAGTGA+AGG - chr3_2:47879846-47879865 Msa0408300:CDS 45.0%
TGAACCATGCATGCACTTCA+TGG - chr3_2:47880044-47880063 Msa0408300:intron 45.0%
GATTCCATGAAGTGCATGCA+TGG + chr3_2:47880051-47880070 None:intergenic 45.0%
AAGCTATTCGGGAGAGCTTA+TGG + chr3_2:47880218-47880237 None:intergenic 45.0%
TTGGAGGTCTCCTGCAAATT+TGG + chr3_2:47880386-47880405 None:intergenic 45.0%
! ATCTTGGTCTTCAATGGCTG+TGG - chr3_2:47880411-47880430 Msa0408300:intron 45.0%
! TCTTGGTCTTCAATGGCTGT+GGG - chr3_2:47880412-47880431 Msa0408300:intron 45.0%
! GGAATATGCGGGAGTTTGTT+AGG - chr3_2:47880436-47880455 Msa0408300:intron 45.0%
!! ATATGCGGGAGTTTGTTAGG+GGG - chr3_2:47880439-47880458 Msa0408300:intron 45.0%
! CTCCAGAATCTTCGATTTGC+TGG + chr3_2:47880728-47880747 None:intergenic 45.0%
TCTGGAGAAAGGAGATTCCT+TGG - chr3_2:47880741-47880760 Msa0408300:intron 45.0%
GAGATTCCTTGGCAACAAAG+TGG - chr3_2:47880752-47880771 Msa0408300:intron 45.0%
ATGGAACCACTTTGTTGCCA+AGG + chr3_2:47880761-47880780 None:intergenic 45.0%
! GAGAGCACACTTCAGATTGA+TGG - chr3_2:47880960-47880979 Msa0408300:intron 45.0%
ATGTCCGACATCAACACATC+TGG - chr3_2:47880991-47881010 Msa0408300:intron 45.0%
TGTCCGACATCAACACATCT+GGG - chr3_2:47880992-47881011 Msa0408300:intron 45.0%
! GTACCCAGATGTGTTGATGT+CGG + chr3_2:47880998-47881017 None:intergenic 45.0%
GGCCATAATGTAAAGGAGGA+TGG + chr3_2:47881169-47881188 None:intergenic 45.0%
CACACACTCTAATGAGGAGT+AGG + chr3_2:47881346-47881365 None:intergenic 45.0%
! AGCTCGAAGCATCATTCTTG+GGG - chr3_2:47881554-47881573 Msa0408300:intron 45.0%
! GGTTGGTTAGGACTTATGCT+CGG - chr3_2:47881592-47881611 Msa0408300:intron 45.0%
! GCGTCATATGCTTTAGGTGA+CGG + chr3_2:47881633-47881652 None:intergenic 45.0%
TGCAGATTGTCGTTGTGTCT+AGG - chr3_2:47881785-47881804 Msa0408300:intron 45.0%
AACCCTATCTGGTACACCAA+AGG + chr3_2:47881821-47881840 None:intergenic 45.0%
TGGTGTACCAGATAGGGTTA+TGG - chr3_2:47881822-47881841 Msa0408300:intron 45.0%
!! AAGAGCACCATAACCCTATC+TGG + chr3_2:47881832-47881851 None:intergenic 45.0%
GATAGGGTTATGGTGCTCTT+TGG - chr3_2:47881832-47881851 Msa0408300:intron 45.0%
CTTTGTGGATTTCCCCTTGA+TGG + chr3_2:47882218-47882237 None:intergenic 45.0%
! TTTTCCAACCCATAGGGCAA+TGG - chr3_2:47882520-47882539 Msa0408300:intron 45.0%
TATACCATTGCCCTATGGGT+TGG + chr3_2:47882527-47882546 None:intergenic 45.0%
AAATCCCGTCCAATTGGAGT+GGG - chr3_2:47882821-47882840 Msa0408300:intron 45.0%
TAAACCCACTCCAATTGGAC+GGG + chr3_2:47882828-47882847 None:intergenic 45.0%
CTAAACCCACTCCAATTGGA+CGG + chr3_2:47882829-47882848 None:intergenic 45.0%
! CCAATTGGAGTGGGTTTAGA+CGG - chr3_2:47882830-47882849 Msa0408300:intron 45.0%
! CAATTGGAGTGGGTTTAGAC+GGG - chr3_2:47882831-47882850 Msa0408300:intron 45.0%
ACACCAAAATCCGTACATGC+GGG + chr3_2:47882859-47882878 None:intergenic 45.0%
GACACCAAAATCCGTACATG+CGG + chr3_2:47882860-47882879 None:intergenic 45.0%
AATAGGCCCATTTCCTACTC+TGG + chr3_2:47882916-47882935 None:intergenic 45.0%
CGGGTTACAGGGTTCATAAT+AGG + chr3_2:47882933-47882952 None:intergenic 45.0%
GTTAAGAATAGGCCCAAGAC+GGG + chr3_2:47882952-47882971 None:intergenic 45.0%
GGTTAAGAATAGGCCCAAGA+CGG + chr3_2:47882953-47882972 None:intergenic 45.0%
! CTGGAAAGCCACGATTTTGA+AGG + chr3_2:47882974-47882993 None:intergenic 45.0%
AAATCGTGGCTTTCCAGAGT+AGG - chr3_2:47882977-47882996 Msa0408300:intron 45.0%
TTTGGGGGAAAAGCTAATCG+AGG - chr3_2:47883283-47883302 Msa0408300:CDS 45.0%
GGAAAAGCTAATCGAGGCAA+GGG - chr3_2:47883289-47883308 Msa0408300:CDS 45.0%
ATGCTTACGTGTTCAAGACG+TGG - chr3_2:47883380-47883399 Msa0408300:CDS 45.0%
! GATGAACTATGGTTTGGGTC+AGG - chr3_2:47883596-47883615 Msa0408300:intron 45.0%
! GGTACCGAGATTTCATGTGT+GGG + chr3_2:47884092-47884111 None:intergenic 45.0%
! TGGTACCGAGATTTCATGTG+TGG + chr3_2:47884093-47884112 None:intergenic 45.0%
TAAGCCAGTGAGGATGAAGT+GGG + chr3_2:47884216-47884235 None:intergenic 45.0%
TTAAGCCAGTGAGGATGAAG+TGG + chr3_2:47884217-47884236 None:intergenic 45.0%
! ATAGGGTCTTTTGTAGGTGC+TGG - chr3_2:47885051-47885070 Msa0408300:intron 45.0%
!! GATGCACCTGTTGCTTCTTT+TGG + chr3_2:47885186-47885205 None:intergenic 45.0%
!!! TTTGTTTATATTTTTATTTA+TGG - chr3_2:47881366-47881385 Msa0408300:intron 5.0%
!! TAATTTAAATAAAAATTAAC+AGG + chr3_2:47882088-47882107 None:intergenic 5.0%
!!! TATATCAATTTTATTTTAAA+GGG + chr3_2:47884343-47884362 None:intergenic 5.0%
!!! ATATATCAATTTTATTTTAA+AGG + chr3_2:47884344-47884363 None:intergenic 5.0%
!!! TAAAATTGATATATATTTTA+TGG - chr3_2:47884350-47884369 Msa0408300:CDS 5.0%
TGTTGATGCGATGATAGCCG+AGG - chr3_2:47879714-47879733 Msa0408300:exon 50.0%
ACATTCCCTTCGACCTTCAC+TGG + chr3_2:47879862-47879881 None:intergenic 50.0%
TTGGTCAGGGCCAAATTTGC+AGG - chr3_2:47880373-47880392 Msa0408300:intron 50.0%
ATGGCTGTGGGAGGAATATG+CGG - chr3_2:47880424-47880443 Msa0408300:intron 50.0%
TGGAGGACAGACCTATGTCT+TGG - chr3_2:47881461-47881480 Msa0408300:intron 50.0%
TGGGAACAGTAATGTGGGCA+AGG + chr3_2:47881492-47881511 None:intergenic 50.0%
! CGAAGCATCATTCTTGGGGA+CGG - chr3_2:47881558-47881577 Msa0408300:intron 50.0%
! GTACGCGTTGTTGGTTGGTT+AGG - chr3_2:47881580-47881599 Msa0408300:intron 50.0%
CAGGTATGCTCATGTTGCGT+TGG - chr3_2:47881747-47881766 Msa0408300:intron 50.0%
! TCGCCTTTGGTGTACCAGAT+AGG - chr3_2:47881815-47881834 Msa0408300:intron 50.0%
! CGCCTTTGGTGTACCAGATA+GGG - chr3_2:47881816-47881835 Msa0408300:intron 50.0%
GGTTATGGTGCTCTTTGGCT+CGG - chr3_2:47881837-47881856 Msa0408300:intron 50.0%
!! TTTGGCTCGGCACTTGTTGA+TGG - chr3_2:47881850-47881869 Msa0408300:intron 50.0%
AAGCATGTGCATGGTACGAG+AGG - chr3_2:47881935-47881954 Msa0408300:intron 50.0%
! GAGATTGAGGGTGTGAGATG+TGG - chr3_2:47882559-47882578 Msa0408300:intron 50.0%
GTGGATTCAGGTGAGGGTTT+GGG - chr3_2:47882708-47882727 Msa0408300:intron 50.0%
TGGATTCAGGTGAGGGTTTG+GGG - chr3_2:47882709-47882728 Msa0408300:intron 50.0%
!! TGGCTACAAGACGGGTTACA+AGG + chr3_2:47882748-47882767 None:intergenic 50.0%
CGGGATTTCTCGCTTTGACT+AGG + chr3_2:47882809-47882828 None:intergenic 50.0%
AGCGAGAAATCCCGTCCAAT+TGG - chr3_2:47882815-47882834 Msa0408300:intron 50.0%
GAAATCCCGTCCAATTGGAG+TGG - chr3_2:47882820-47882839 Msa0408300:intron 50.0%
CCGTCTAAACCCACTCCAAT+TGG + chr3_2:47882833-47882852 None:intergenic 50.0%
! GTACCCGCATGTACGGATTT+TGG - chr3_2:47882853-47882872 Msa0408300:intron 50.0%
ATGAACCCTGTAACCCGTCT+TGG - chr3_2:47882936-47882955 Msa0408300:intron 50.0%
TGAACCCTGTAACCCGTCTT+GGG - chr3_2:47882937-47882956 Msa0408300:intron 50.0%
CGTTCCTTTCTCTCGAGTGT+TGG - chr3_2:47883061-47883080 Msa0408300:CDS 50.0%
GGGAAAAGCTAATCGAGGCA+AGG - chr3_2:47883288-47883307 Msa0408300:CDS 50.0%
TAGTTACTTGGCCACCAGAG+AGG - chr3_2:47883546-47883565 Msa0408300:intron 50.0%
AAGCCAGTGAGGATGAAGTG+GGG + chr3_2:47884215-47884234 None:intergenic 50.0%
CTATGCCCTCCAGGAATTGA+AGG - chr3_2:47884982-47885001 Msa0408300:intron 50.0%
!!! GTCTTTTGTAGGTGCTGGCT+TGG - chr3_2:47885056-47885075 Msa0408300:intron 50.0%
CTGTGCTCTCCCTTGTACCA+TGG - chr3_2:47879593-47879612 Msa0408300:three_prime_UTR 55.0%
TACGGACCAGTGAAGGTCGA+AGG - chr3_2:47879853-47879872 Msa0408300:CDS 55.0%
ACGGACCAGTGAAGGTCGAA+GGG - chr3_2:47879854-47879873 Msa0408300:CDS 55.0%
TGGTCTTCAATGGCTGTGGG+AGG - chr3_2:47880415-47880434 Msa0408300:intron 55.0%
TGGCTGTGGGAGGAATATGC+GGG - chr3_2:47880425-47880444 Msa0408300:intron 55.0%
TATTCCAGCCGTGCGTTGCA+CGG + chr3_2:47882064-47882083 None:intergenic 55.0%
! TAGCATTCGGGGGTGGATTC+AGG - chr3_2:47882696-47882715 Msa0408300:intron 55.0%
! GGTGGATTCAGGTGAGGGTT+TGG - chr3_2:47882707-47882726 Msa0408300:intron 55.0%
ATTCAGGTGAGGGTTTGGGG+TGG - chr3_2:47882712-47882731 Msa0408300:intron 55.0%
TAGACGGGTACCCGCATGTA+CGG - chr3_2:47882846-47882865 Msa0408300:intron 55.0%
!! TAGGCCCAAGACGGGTTACA+GGG + chr3_2:47882944-47882963 None:intergenic 55.0%
!! ATAGGCCCAAGACGGGTTAC+AGG + chr3_2:47882945-47882964 None:intergenic 55.0%
CTACCCCACTTCATCCTCAC+TGG - chr3_2:47884209-47884228 Msa0408300:CDS 55.0%
TCTGGACAACTATGCCCTCC+AGG - chr3_2:47884973-47884992 Msa0408300:intron 55.0%
TTGGGGACGGTACGCGTTGT+TGG - chr3_2:47881571-47881590 Msa0408300:intron 60.0%
GGACGGTACGCGTTGTTGGT+TGG - chr3_2:47881575-47881594 Msa0408300:intron 60.0%
GTACGAACCCGTGCAACGCA+CGG - chr3_2:47882053-47882072 Msa0408300:intron 60.0%
ATTCCAGCCGTGCGTTGCAC+GGG + chr3_2:47882063-47882082 None:intergenic 60.0%
! TTCGGGGGTGGATTCAGGTG+AGG - chr3_2:47882701-47882720 Msa0408300:intron 60.0%
! TCGGGGGTGGATTCAGGTGA+GGG - chr3_2:47882702-47882721 Msa0408300:intron 60.0%
ACCTCGTGACTCCTCTCTGG+TGG + chr3_2:47883560-47883579 None:intergenic 60.0%
TGCACCTCGTGACTCCTCTC+TGG + chr3_2:47883563-47883582 None:intergenic 60.0%
GCCACCAGAGAGGAGTCACG+AGG - chr3_2:47883556-47883575 Msa0408300:intron 65.0%
GAACCCGTGCAACGCACGGC+TGG - chr3_2:47882057-47882076 Msa0408300:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 47879523 47885421 47879523 ID=Msa0408300;Name=Msa0408300
chr3_2 mRNA 47879523 47885421 47879523 ID=Msa0408300-mRNA-1;Parent=Msa0408300;Name=Msa0408300-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|1|0.8|1|1|1|5|209|428
chr3_2 exon 47879523 47879993 47879523 ID=Msa0408300-mRNA-1:exon:9256;Parent=Msa0408300-mRNA-1
chr3_2 exon 47883057 47883194 47883057 ID=Msa0408300-mRNA-1:exon:9255;Parent=Msa0408300-mRNA-1
chr3_2 exon 47883276 47883473 47883276 ID=Msa0408300-mRNA-1:exon:9254;Parent=Msa0408300-mRNA-1
chr3_2 exon 47884105 47884563 47884105 ID=Msa0408300-mRNA-1:exon:9253;Parent=Msa0408300-mRNA-1
chr3_2 exon 47885192 47885421 47885192 ID=Msa0408300-mRNA-1:exon:9252;Parent=Msa0408300-mRNA-1
chr3_2 CDS 47885192 47885421 47885192 ID=Msa0408300-mRNA-1:cds;Parent=Msa0408300-mRNA-1
chr3_2 CDS 47884105 47884563 47884105 ID=Msa0408300-mRNA-1:cds;Parent=Msa0408300-mRNA-1
chr3_2 CDS 47883276 47883473 47883276 ID=Msa0408300-mRNA-1:cds;Parent=Msa0408300-mRNA-1
chr3_2 CDS 47883057 47883194 47883057 ID=Msa0408300-mRNA-1:cds;Parent=Msa0408300-mRNA-1
chr3_2 CDS 47879732 47879993 47879732 ID=Msa0408300-mRNA-1:cds;Parent=Msa0408300-mRNA-1
chr3_2 three_prime_UTR 47879523 47879731 47879523 ID=Msa0408300-mRNA-1:three_prime_utr;Parent=Msa0408300-mRNA-1
Gene Sequence

>Msa0408300

ATGAACAGAATACTTTCTGATTGTATCCCGATTAAAGGAAGTAAGCGGATTTCGTACTTGGTCATTGCGACTGTGCTCTCCCTTGTACCATGGTTTATTTTAGGTTTAAGTTCAACCTTGAGGAATTCAACATGGCACCTGATGGTATTCTTGACTGTGCAAAACTTAGGATCAGCCATGGCAGATGTTGTTGTTGATGCGATGATAGCCGAGGCTGTAAGATATGACAAGGCCAAATTTGCAGGAGACCTCCAATCATTATCTTGGTCTTCAATGGCTGTGGGAGGAATATGCGGGAGTTTGTTAGGGGGAATCGCGTTATCAAGTTTACAGATAGATGCTATTTTTCTTCTATTTTCTGTACTGCCTTGCATACAGTTATTATCATGCTTTTCTGTGAAGGAGACCTCTGTAAATAGCGAAGTTTTAGTTGAGGATTATATTGCAAAGGATTTGCATACAAATGGTAGTAGTGGTACGCTAGATGAAGATAGTTCTTTTACTAAAAAGTCACACAGTAGTACAAGAAAAAGAAAGAAGGGAAAAAAGAACACAAAAAATAGAACAGTAAATACCAGCAAATCGAAGATTCTGGAGAAAGGAGATTCCTTGGCAACAAAGTGGTTCCATTCCTTGAAGAAAGCAATTTATGATTTGTGTCGTGCGTTTAGACAGCCAATGATTTTGAGACCTATGTCTTGGTTTTTCCTTGCCCACATTACTGTTCCCAATCTTTCAACAGTCTTATTCTACTACGAAACGGAGGTTCTAAAGCTCGAAGCATCATTCTTGGGGACGGTACGCGTTGTTGGTTGGTTAGGACTTATGCTCGGAACCTTCGTTTATAACCGTCACCTAAAGCATATGACGCTTAGAAGAATTCTCATGTATGCTCATGTTGCGTTGGCCTTCTTGAATCTTCTGCAGATTGTCGTTGTGTCTAGGAAAAATATCGCCTTTGGTGTACCAGATAGGGTTATGGTGCTCTTTGGCTCGGCACTTGTTGATGGAATCAATCAATTCAAGTTTATGCCTTTCCTAATCTTATCTGGACAACTATGCCCTCCAGGAATTGAAGGAACTTTATTTGCTCTTTTCATGTCAATAAACAACTTGGGAACAACGATAGGGTCTTTTGTAGGTGCTGGCTTGGCTTCTATATTGAACATAGATTCAGGATCTTTTGACAATCTTCTGTTAGGCATTGTCATTCATGCTTTGTGCAATTTCATTCCAATTGCTTTTCTGTTTCTGATACCAAAAGAAGCAACAGGTGCATCAGCATAG

Protein sequence

>Msa0408300

MNRILSDCIPIKGSKRISYLVIATVLSLVPWFILGLSSTLRNSTWHLMVFLTVQNLGSAMADVVVDAMIAEAVRYDKAKFAGDLQSLSWSSMAVGGICGSLLGGIALSSLQIDAIFLLFSVLPCIQLLSCFSVKETSVNSEVLVEDYIAKDLHTNGSSGTLDEDSSFTKKSHSSTRKRKKGKKNTKNRTVNTSKSKILEKGDSLATKWFHSLKKAIYDLCRAFRQPMILRPMSWFFLAHITVPNLSTVLFYYETEVLKLEASFLGTVRVVGWLGLMLGTFVYNRHLKHMTLRRILMYAHVALAFLNLLQIVVVSRKNIAFGVPDRVMVLFGSALVDGINQFKFMPFLILSGQLCPPGIEGTLFALFMSINNLGTTIGSFVGAGLASILNIDSGSFDNLLLGIVIHALCNFIPIAFLFLIPKEATGASA*