AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1332760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1332760 MtrunA17_Chr4g0068761 96.552 203 7 0 1 203 1 203 5.31e-117 331
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 86 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTCTGACCTCTTTCTCTT+TGG 0.280363 8_4:+52731495 None:intergenic
GGTTTATTACTATATTTATC+AGG 0.321740 8_4:-52731294 Msa1332760:three_prime_UTR
TCTGACCTCTTTCTCTTTGG+TGG 0.353625 8_4:+52731498 None:intergenic
GCTATATATTGTATTTGTTA+TGG 0.360300 8_4:-52731330 Msa1332760:three_prime_UTR
GACTTTGAACCTGTGGAAAA+TGG 0.383052 8_4:-52731603 Msa1332760:CDS
ATAGTTAGTCCATTCTTTGC+TGG 0.392621 8_4:-52731416 Msa1332760:exon
TCAGTTGAAGAAGTAGTTGA+TGG 0.404943 8_4:-52733070 Msa1332760:CDS
GGAGAACGAGGAAGAGGAAC+AGG 0.416231 8_4:-52732822 Msa1332760:intron
TATTGTATTTGTTATGGTGC+AGG 0.419034 8_4:-52731324 Msa1332760:three_prime_UTR
GGACTAACTATATCGTTTAG+AGG 0.427231 8_4:+52731428 None:intergenic
TGAACATCATCTACCATCCT+AGG 0.427553 8_4:+52731193 None:intergenic
AAGATTTCGAAATTCGAATT+CGG 0.439423 8_4:+52733219 None:intergenic
GAGTATCTTGTCCGCCCTCT+AGG 0.469645 8_4:-52731654 Msa1332760:CDS
CCCTCTAGGTGCTGCTGAGG+AGG 0.471471 8_4:-52731640 Msa1332760:CDS
AGAAGGGATACATTAGTTCA+TGG 0.474448 8_4:-52731364 Msa1332760:three_prime_UTR
CTGTCATCATCATCGTCATC+AGG 0.478014 8_4:+52732893 None:intergenic
CTTCTTCAAATTCAATTCCT+CGG 0.484334 8_4:+52733147 None:intergenic
ACTAGTTCTCCAGCAAAGAA+TGG 0.486901 8_4:+52731407 None:intergenic
TTATCTTTCACCCACTCCCT+AGG 0.506026 8_4:-52731210 Msa1332760:three_prime_UTR
GATGATTCCGATGACGATGA+TGG 0.511741 8_4:-52731471 Msa1332760:CDS
CTCTCCTCCATCATCGTCAT+CGG 0.512020 8_4:+52731464 None:intergenic
TCTAGGTGCTGCTGAGGAGG+AGG 0.515413 8_4:-52731637 Msa1332760:CDS
GAAGCAAGTGGAGGAAAGTG+AGG 0.519338 8_4:-52733128 Msa1332760:CDS
CGCGTGAATTCTCGTTTCAA+CGG 0.519650 8_4:-52733322 Msa1332760:five_prime_UTR
TGAAGACAATGAGGAGGATG+AGG 0.521900 8_4:-52733008 Msa1332760:CDS
TGAGGAGGAGAACGAGGAAG+AGG 0.529676 8_4:-52732828 Msa1332760:CDS
GATGAAGTGGAGGAAGATGA+AGG 0.530159 8_4:-52731570 Msa1332760:CDS
GCAAGTGCATAGTCAATAGT+TGG 0.532260 8_4:-52731272 Msa1332760:three_prime_UTR
TTCTGCTGCTATGAAAATGT+TGG 0.533453 8_4:-52731163 Msa1332760:three_prime_UTR
AGTGGAGGAAGATGAAGGTG+AGG 0.534123 8_4:-52731565 Msa1332760:CDS
CCTCCTCAGCAGCACCTAGA+GGG 0.535425 8_4:+52731640 None:intergenic
GAGGAGGATGAAGATGAAGA+AGG 0.535794 8_4:-52732947 Msa1332760:CDS
GATGACGACGATGAAGGTAC+TGG 0.547523 8_4:-52732986 Msa1332760:CDS
ATTGAATTTGAAGAAGCAAG+TGG 0.549489 8_4:-52733140 Msa1332760:CDS
TCATCTACCATCCTAGGGAG+TGG 0.561741 8_4:+52731199 None:intergenic
GAAGGTGAGGAAGATGAAGG+TGG 0.562453 8_4:-52731552 Msa1332760:CDS
GAAGAAGGTGGAACAGCTGA+AGG 0.562641 8_4:-52732932 Msa1332760:CDS
GATGAGGATGACGACGATGA+AGG 0.563427 8_4:-52732992 Msa1332760:CDS
CTTTCACCCACTCCCTAGGA+TGG 0.563600 8_4:-52731206 Msa1332760:three_prime_UTR
CATCTACCATCCTAGGGAGT+GGG 0.565255 8_4:+52731200 None:intergenic
GATGAAGGTGAGGAAGATGA+AGG 0.565731 8_4:-52731555 Msa1332760:CDS
TCCTCCTCAGCAGCACCTAG+AGG 0.566944 8_4:+52731639 None:intergenic
AGGTTCCACCAAAGAGAAAG+AGG 0.567677 8_4:-52731503 Msa1332760:CDS
GAGGATGAAGATGAAGAAGG+TGG 0.570237 8_4:-52732944 Msa1332760:CDS
CCGCCCTCTAGGTGCTGCTG+AGG 0.570609 8_4:-52731643 Msa1332760:CDS
CAATAGTTGGCTAAATTATG+TGG 0.578065 8_4:-52731259 Msa1332760:three_prime_UTR
AGTTGGCTAAATTATGTGGT+AGG 0.579676 8_4:-52731255 Msa1332760:three_prime_UTR
TGGTGTGGACGAAGATGAAG+TGG 0.587398 8_4:-52731583 Msa1332760:CDS
CTATCAACACATTTCAGAGA+AGG 0.588171 8_4:-52731381 Msa1332760:three_prime_UTR
GAACATCATCTACCATCCTA+GGG 0.589444 8_4:+52731194 None:intergenic
ATCTAGTGACTTTGAACCTG+TGG 0.594251 8_4:-52731610 Msa1332760:CDS
TATCAACACATTTCAGAGAA+GGG 0.599290 8_4:-52731380 Msa1332760:three_prime_UTR
ACTGTGTTAGCGAAGAGAAG+AGG 0.599437 8_4:-52733279 Msa1332760:five_prime_UTR
CGATGATGAGGAGGAGAACG+AGG 0.600100 8_4:-52732834 Msa1332760:CDS
GACTAACTATATCGTTTAGA+GGG 0.602265 8_4:+52731429 None:intergenic
GAAGGTGGCAGTGATGATGA+TGG 0.609983 8_4:-52731537 Msa1332760:CDS
TTCGGTGTTGAAATCGAGCA+AGG 0.611094 8_4:+52733237 None:intergenic
CAGTGATGATGATGGTGAGA+AGG 0.611385 8_4:-52731529 Msa1332760:CDS
TTGATGACGTGGAAATGTAT+CGG 0.613684 8_4:+52733347 None:intergenic
CGATGACGATGATGGAGGAG+AGG 0.619440 8_4:-52731463 Msa1332760:CDS
CCTCAGCAGCACCTAGAGGG+CGG 0.623892 8_4:+52731643 None:intergenic
ATTCACGCGGATTGATGACG+TGG 0.632078 8_4:+52733336 None:intergenic
AGACGACGAGGACGATGATG+AGG 0.633637 8_4:-52732846 Msa1332760:CDS
GAAGACAGTGAAGATGATGA+AGG 0.634050 8_4:-52733046 Msa1332760:CDS
CGACGAGGACGATGATGAGG+AGG 0.638214 8_4:-52732843 Msa1332760:CDS
GAATTTGAAGAAGCAAGTGG+AGG 0.640087 8_4:-52733137 Msa1332760:CDS
GTGTTTCAACGAGGATAGTG+TGG 0.646870 8_4:+52733391 None:intergenic
GATAGTGTGGTTGAGCGTTG+CGG 0.655031 8_4:+52733404 None:intergenic
TTGAAAGATGAAGTTAACCG+AGG 0.656029 8_4:-52733164 Msa1332760:exon
TGAACCTGTGGAAAATGGTG+TGG 0.665989 8_4:-52731598 Msa1332760:CDS
GATTCCGATGACGATGATGG+AGG 0.666214 8_4:-52731468 Msa1332760:CDS
TGGCGGTGGTGATGAAGATG+AGG 0.668517 8_4:-52732966 Msa1332760:CDS
TGATGATGGTGAGAAGGCTG+AGG 0.678911 8_4:-52731523 Msa1332760:CDS
TGTGGACGAAGATGAAGTGG+AGG 0.680459 8_4:-52731580 Msa1332760:CDS
GACGATGAAGGTACTGGCGG+TGG 0.681659 8_4:-52732980 Msa1332760:CDS
TGATGATGAAGACAATGAGG+AGG 0.682640 8_4:-52733014 Msa1332760:CDS
CGGTGGTGATGAAGATGAGG+AGG 0.685551 8_4:-52732963 Msa1332760:CDS
GGAACAGCTGAAGGTGCACG+TGG 0.687851 8_4:-52732923 Msa1332760:CDS
CGTTGAAACGAGAATTCACG+CGG 0.698746 8_4:+52733323 None:intergenic
GACGACGATGAAGGTACTGG+CGG 0.700903 8_4:-52732983 Msa1332760:CDS
AAAAGATTTGTGTTTCAACG+AGG 0.709051 8_4:+52733382 None:intergenic
TGATGACAGTGACAATGATG+AGG 0.711629 8_4:-52732879 Msa1332760:CDS
GTATGATGATGAAGACAATG+AGG 0.726974 8_4:-52733017 Msa1332760:CDS
GGATGACGATGAAGACGACG+AGG 0.745183 8_4:-52732858 Msa1332760:CDS
ACAGCTGAAGGTGCACGTGG+TGG 0.755975 8_4:-52732920 Msa1332760:CDS
TGACGTGGAAATGTATCGGA+CGG 0.787974 8_4:+52733351 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACCAAATTAAAAAAAAA+TGG + chr8_4:52731856-52731875 None:intergenic 10.0%
!! AAAATAAATACAAATTCAAA+AGG + chr8_4:52731931-52731950 None:intergenic 10.0%
!! TGATTATTATTTGATATTTA+TGG - chr8_4:52732318-52732337 Msa1332760:intron 10.0%
!! TTTACTTAAAATTACAAATT+AGG + chr8_4:52732386-52732405 None:intergenic 10.0%
!! AAAACCAAATTAAAAAAAAA+TGG + chr8_4:52731856-52731875 None:intergenic 10.0%
!! AAAATAAATACAAATTCAAA+AGG + chr8_4:52731931-52731950 None:intergenic 10.0%
!! TGATTATTATTTGATATTTA+TGG - chr8_4:52732318-52732337 Msa1332760:intron 10.0%
!! TTTACTTAAAATTACAAATT+AGG + chr8_4:52732386-52732405 None:intergenic 10.0%
!!! ATAACTAATTTTTGTAAATC+TGG - chr8_4:52731778-52731797 Msa1332760:intron 15.0%
!! AGAAAAATTAACAAACAAAA+AGG + chr8_4:52731824-52731843 None:intergenic 15.0%
!!! TGTTCCATTTTTTTTTAATT+TGG - chr8_4:52731849-52731868 Msa1332760:intron 15.0%
!!! GTTGATTTTTTTTTTTTCTA+TGG - chr8_4:52732021-52732040 Msa1332760:intron 15.0%
!! AAAAATCAAATTCTAACTTT+GGG + chr8_4:52732362-52732381 None:intergenic 15.0%
!! TAAAAATCAAATTCTAACTT+TGG + chr8_4:52732363-52732382 None:intergenic 15.0%
!!! CTTGATCAATAAAAATATTT+TGG + chr8_4:52732493-52732512 None:intergenic 15.0%
!!! CAAAATATTTTTATTGATCA+AGG - chr8_4:52732491-52732510 Msa1332760:intron 15.0%
!!! ATAACTAATTTTTGTAAATC+TGG - chr8_4:52731778-52731797 Msa1332760:intron 15.0%
!! AGAAAAATTAACAAACAAAA+AGG + chr8_4:52731824-52731843 None:intergenic 15.0%
!!! TGTTCCATTTTTTTTTAATT+TGG - chr8_4:52731849-52731868 Msa1332760:intron 15.0%
!!! GTTGATTTTTTTTTTTTCTA+TGG - chr8_4:52732021-52732040 Msa1332760:intron 15.0%
!! AAAAATCAAATTCTAACTTT+GGG + chr8_4:52732362-52732381 None:intergenic 15.0%
!! TAAAAATCAAATTCTAACTT+TGG + chr8_4:52732363-52732382 None:intergenic 15.0%
!!! CTTGATCAATAAAAATATTT+TGG + chr8_4:52732493-52732512 None:intergenic 15.0%
!!! CAAAATATTTTTATTGATCA+AGG - chr8_4:52732491-52732510 Msa1332760:intron 15.0%
!! AAAATTAACAAACAAAAAGG+AGG + chr8_4:52731821-52731840 None:intergenic 20.0%
!! TTGAAAATATGTTCAAAGTT+AGG - chr8_4:52731888-52731907 Msa1332760:intron 20.0%
!! TGAAAATATGTTCAAAGTTA+GGG - chr8_4:52731889-52731908 Msa1332760:intron 20.0%
!!! TTAAAGCTAGTTTAGAAATA+TGG - chr8_4:52732286-52732305 Msa1332760:intron 20.0%
!!! GCTATATATTGTATTTGTTA+TGG - chr8_4:52733244-52733263 Msa1332760:five_prime_UTR 20.0%
!! GGTTTATTACTATATTTATC+AGG - chr8_4:52733280-52733299 Msa1332760:five_prime_UTR 20.0%
!! AAAATTAACAAACAAAAAGG+AGG + chr8_4:52731821-52731840 None:intergenic 20.0%
!! TTGAAAATATGTTCAAAGTT+AGG - chr8_4:52731888-52731907 Msa1332760:intron 20.0%
!! TGAAAATATGTTCAAAGTTA+GGG - chr8_4:52731889-52731908 Msa1332760:intron 20.0%
!!! TTAAAGCTAGTTTAGAAATA+TGG - chr8_4:52732286-52732305 Msa1332760:intron 20.0%
!!! GCTATATATTGTATTTGTTA+TGG - chr8_4:52733244-52733263 Msa1332760:five_prime_UTR 20.0%
!! GGTTTATTACTATATTTATC+AGG - chr8_4:52733280-52733299 Msa1332760:five_prime_UTR 20.0%
! AAGATTTCGAAATTCGAATT+CGG + chr8_4:52731358-52731377 None:intergenic 25.0%
!!! ATTTTTGTAAATCTGGTTTC+TGG - chr8_4:52731785-52731804 Msa1332760:intron 25.0%
!! TTGAAAAGCTGATTTAAGTT+AGG - chr8_4:52731958-52731977 Msa1332760:intron 25.0%
!! CATATGTATTTCTTTTCTTC+TGG - chr8_4:52732107-52732126 Msa1332760:intron 25.0%
! GCAAATCAAAATTCAAAAGA+AGG + chr8_4:52732544-52732563 None:intergenic 25.0%
!! TAGTTTGGATTACTTGATTT+TGG - chr8_4:52732654-52732673 Msa1332760:intron 25.0%
! AAAAAACTCCAACACATAAA+TGG - chr8_4:52732739-52732758 Msa1332760:intron 25.0%
!!! CTTCTTACACAAACTTTTTT+AGG - chr8_4:52732883-52732902 Msa1332760:CDS 25.0%
!!! AAACTTTTTTAGGAGGATTT+GGG - chr8_4:52732893-52732912 Msa1332760:CDS 25.0%
! AAGATTTCGAAATTCGAATT+CGG + chr8_4:52731358-52731377 None:intergenic 25.0%
!!! ATTTTTGTAAATCTGGTTTC+TGG - chr8_4:52731785-52731804 Msa1332760:intron 25.0%
!! TTGAAAAGCTGATTTAAGTT+AGG - chr8_4:52731958-52731977 Msa1332760:intron 25.0%
!! CATATGTATTTCTTTTCTTC+TGG - chr8_4:52732107-52732126 Msa1332760:intron 25.0%
! GCAAATCAAAATTCAAAAGA+AGG + chr8_4:52732544-52732563 None:intergenic 25.0%
!! TAGTTTGGATTACTTGATTT+TGG - chr8_4:52732654-52732673 Msa1332760:intron 25.0%
! AAAAAACTCCAACACATAAA+TGG - chr8_4:52732739-52732758 Msa1332760:intron 25.0%
!!! CTTCTTACACAAACTTTTTT+AGG - chr8_4:52732883-52732902 Msa1332760:CDS 25.0%
!!! AAACTTTTTTAGGAGGATTT+GGG - chr8_4:52732893-52732912 Msa1332760:CDS 25.0%
AAAAGATTTGTGTTTCAACG+AGG + chr8_4:52731195-52731214 None:intergenic 30.0%
CTTCTTCAAATTCAATTCCT+CGG + chr8_4:52731430-52731449 None:intergenic 30.0%
ATTGAATTTGAAGAAGCAAG+TGG - chr8_4:52731434-52731453 Msa1332760:CDS 30.0%
! CTGATTTAAGTTAGGACTTA+GGG - chr8_4:52731966-52731985 Msa1332760:intron 30.0%
TATCACAATTCACAAACAAC+TGG + chr8_4:52732065-52732084 None:intergenic 30.0%
AAAAGTAGACTGATTGTAGT+AGG + chr8_4:52732410-52732429 None:intergenic 30.0%
TCGTCGTATTAAACATACAA+TGG + chr8_4:52732466-52732485 None:intergenic 30.0%
!!! ATTTTGATTTGCGCATTGAT+TGG - chr8_4:52732552-52732571 Msa1332760:intron 30.0%
ATGCTAACAGTTGCTAATAT+TGG - chr8_4:52732592-52732611 Msa1332760:intron 30.0%
!! TTTTGAGGGAATTTATGTGT+TGG + chr8_4:52732705-52732724 None:intergenic 30.0%
ATAACCAAAATTTGTGTGAC+TGG + chr8_4:52732779-52732798 None:intergenic 30.0%
!! AAGAAGTACTCAAATGCAAA+AGG + chr8_4:52732866-52732885 None:intergenic 30.0%
!!! CTTACACAAACTTTTTTAGG+AGG - chr8_4:52732886-52732905 Msa1332760:CDS 30.0%
!!! CAAACTTTTTTAGGAGGATT+TGG - chr8_4:52732892-52732911 Msa1332760:CDS 30.0%
GACTAACTATATCGTTTAGA+GGG + chr8_4:52733148-52733167 None:intergenic 30.0%
TATCAACACATTTCAGAGAA+GGG - chr8_4:52733194-52733213 Msa1332760:five_prime_UTR 30.0%
!! TATTGTATTTGTTATGGTGC+AGG - chr8_4:52733250-52733269 Msa1332760:five_prime_UTR 30.0%
CAATAGTTGGCTAAATTATG+TGG - chr8_4:52733315-52733334 Msa1332760:five_prime_UTR 30.0%
AAAAGATTTGTGTTTCAACG+AGG + chr8_4:52731195-52731214 None:intergenic 30.0%
CTTCTTCAAATTCAATTCCT+CGG + chr8_4:52731430-52731449 None:intergenic 30.0%
ATTGAATTTGAAGAAGCAAG+TGG - chr8_4:52731434-52731453 Msa1332760:CDS 30.0%
! CTGATTTAAGTTAGGACTTA+GGG - chr8_4:52731966-52731985 Msa1332760:intron 30.0%
TATCACAATTCACAAACAAC+TGG + chr8_4:52732065-52732084 None:intergenic 30.0%
AAAAGTAGACTGATTGTAGT+AGG + chr8_4:52732410-52732429 None:intergenic 30.0%
TCGTCGTATTAAACATACAA+TGG + chr8_4:52732466-52732485 None:intergenic 30.0%
!!! ATTTTGATTTGCGCATTGAT+TGG - chr8_4:52732552-52732571 Msa1332760:intron 30.0%
ATGCTAACAGTTGCTAATAT+TGG - chr8_4:52732592-52732611 Msa1332760:intron 30.0%
!! TTTTGAGGGAATTTATGTGT+TGG + chr8_4:52732705-52732724 None:intergenic 30.0%
ATAACCAAAATTTGTGTGAC+TGG + chr8_4:52732779-52732798 None:intergenic 30.0%
!! AAGAAGTACTCAAATGCAAA+AGG + chr8_4:52732866-52732885 None:intergenic 30.0%
!!! CTTACACAAACTTTTTTAGG+AGG - chr8_4:52732886-52732905 Msa1332760:CDS 30.0%
!!! CAAACTTTTTTAGGAGGATT+TGG - chr8_4:52732892-52732911 Msa1332760:CDS 30.0%
GACTAACTATATCGTTTAGA+GGG + chr8_4:52733148-52733167 None:intergenic 30.0%
TATCAACACATTTCAGAGAA+GGG - chr8_4:52733194-52733213 Msa1332760:five_prime_UTR 30.0%
!! TATTGTATTTGTTATGGTGC+AGG - chr8_4:52733250-52733269 Msa1332760:five_prime_UTR 30.0%
CAATAGTTGGCTAAATTATG+TGG - chr8_4:52733315-52733334 Msa1332760:five_prime_UTR 30.0%
!! TTGATGACGTGGAAATGTAT+CGG + chr8_4:52731230-52731249 None:intergenic 35.0%
TTGAAAGATGAAGTTAACCG+AGG - chr8_4:52731410-52731429 Msa1332760:three_prime_UTR 35.0%
!!! TGAGGTTATTGTTTTGAGTG+AGG - chr8_4:52731464-52731483 Msa1332760:CDS 35.0%
TCAGTTGAAGAAGTAGTTGA+TGG - chr8_4:52731504-52731523 Msa1332760:CDS 35.0%
! GTATGATGATGAAGACAATG+AGG - chr8_4:52731557-52731576 Msa1332760:CDS 35.0%
! GCTGATTTAAGTTAGGACTT+AGG - chr8_4:52731965-52731984 Msa1332760:intron 35.0%
AATCCAAACTATCCCAACAA+AGG + chr8_4:52732645-52732664 None:intergenic 35.0%
AAAGATGGCCATTTATGTGT+TGG + chr8_4:52732750-52732769 None:intergenic 35.0%
GGACTAACTATATCGTTTAG+AGG + chr8_4:52733149-52733168 None:intergenic 35.0%
ATAGTTAGTCCATTCTTTGC+TGG - chr8_4:52733158-52733177 Msa1332760:CDS 35.0%
CTATCAACACATTTCAGAGA+AGG - chr8_4:52733193-52733212 Msa1332760:five_prime_UTR 35.0%
AGAAGGGATACATTAGTTCA+TGG - chr8_4:52733210-52733229 Msa1332760:five_prime_UTR 35.0%
! TGTTATGGTGCAGGATTTTT+AGG - chr8_4:52733259-52733278 Msa1332760:five_prime_UTR 35.0%
AGTTGGCTAAATTATGTGGT+AGG - chr8_4:52733319-52733338 Msa1332760:five_prime_UTR 35.0%
TTCTGCTGCTATGAAAATGT+TGG - chr8_4:52733411-52733430 Msa1332760:five_prime_UTR 35.0%
TCTGCTGCTATGAAAATGTT+GGG - chr8_4:52733412-52733431 Msa1332760:five_prime_UTR 35.0%
!! TTGATGACGTGGAAATGTAT+CGG + chr8_4:52731230-52731249 None:intergenic 35.0%
TTGAAAGATGAAGTTAACCG+AGG - chr8_4:52731410-52731429 Msa1332760:three_prime_UTR 35.0%
!!! TGAGGTTATTGTTTTGAGTG+AGG - chr8_4:52731464-52731483 Msa1332760:CDS 35.0%
TCAGTTGAAGAAGTAGTTGA+TGG - chr8_4:52731504-52731523 Msa1332760:CDS 35.0%
! GTATGATGATGAAGACAATG+AGG - chr8_4:52731557-52731576 Msa1332760:CDS 35.0%
! GCTGATTTAAGTTAGGACTT+AGG - chr8_4:52731965-52731984 Msa1332760:intron 35.0%
AATCCAAACTATCCCAACAA+AGG + chr8_4:52732645-52732664 None:intergenic 35.0%
AAAGATGGCCATTTATGTGT+TGG + chr8_4:52732750-52732769 None:intergenic 35.0%
GGACTAACTATATCGTTTAG+AGG + chr8_4:52733149-52733168 None:intergenic 35.0%
ATAGTTAGTCCATTCTTTGC+TGG - chr8_4:52733158-52733177 Msa1332760:CDS 35.0%
CTATCAACACATTTCAGAGA+AGG - chr8_4:52733193-52733212 Msa1332760:five_prime_UTR 35.0%
AGAAGGGATACATTAGTTCA+TGG - chr8_4:52733210-52733229 Msa1332760:five_prime_UTR 35.0%
! TGTTATGGTGCAGGATTTTT+AGG - chr8_4:52733259-52733278 Msa1332760:five_prime_UTR 35.0%
AGTTGGCTAAATTATGTGGT+AGG - chr8_4:52733319-52733338 Msa1332760:five_prime_UTR 35.0%
GAATTTGAAGAAGCAAGTGG+AGG - chr8_4:52731437-52731456 Msa1332760:CDS 40.0%
GAAGACAGTGAAGATGATGA+AGG - chr8_4:52731528-52731547 Msa1332760:CDS 40.0%
! TGATGATGAAGACAATGAGG+AGG - chr8_4:52731560-52731579 Msa1332760:CDS 40.0%
TGATGACAGTGACAATGATG+AGG - chr8_4:52731695-52731714 Msa1332760:intron 40.0%
! TCCTTTTCACGTTCCTTTGT+TGG - chr8_4:52732629-52732648 Msa1332760:intron 40.0%
! CCTTTTCACGTTCCTTTGTT+GGG - chr8_4:52732630-52732649 Msa1332760:intron 40.0%
GTTCCTTTGTTGGGATAGTT+TGG - chr8_4:52732639-52732658 Msa1332760:intron 40.0%
! GTAGCCAGTCACACAAATTT+TGG - chr8_4:52732772-52732791 Msa1332760:intron 40.0%
ATCTAGTGACTTTGAACCTG+TGG - chr8_4:52732964-52732983 Msa1332760:CDS 40.0%
GACTTTGAACCTGTGGAAAA+TGG - chr8_4:52732971-52732990 Msa1332760:CDS 40.0%
TTGTCTGACCTCTTTCTCTT+TGG + chr8_4:52733082-52733101 None:intergenic 40.0%
! ACTAGTTCTCCAGCAAAGAA+TGG + chr8_4:52733170-52733189 None:intergenic 40.0%
GCAAGTGCATAGTCAATAGT+TGG - chr8_4:52733302-52733321 Msa1332760:five_prime_UTR 40.0%
GAACATCATCTACCATCCTA+GGG + chr8_4:52733383-52733402 None:intergenic 40.0%
TGAACATCATCTACCATCCT+AGG + chr8_4:52733384-52733403 None:intergenic 40.0%
GAATTTGAAGAAGCAAGTGG+AGG - chr8_4:52731437-52731456 Msa1332760:CDS 40.0%
GAAGACAGTGAAGATGATGA+AGG - chr8_4:52731528-52731547 Msa1332760:CDS 40.0%
! TGATGATGAAGACAATGAGG+AGG - chr8_4:52731560-52731579 Msa1332760:CDS 40.0%
TGATGACAGTGACAATGATG+AGG - chr8_4:52731695-52731714 Msa1332760:intron 40.0%
! TCCTTTTCACGTTCCTTTGT+TGG - chr8_4:52732629-52732648 Msa1332760:intron 40.0%
! CCTTTTCACGTTCCTTTGTT+GGG - chr8_4:52732630-52732649 Msa1332760:intron 40.0%
GTTCCTTTGTTGGGATAGTT+TGG - chr8_4:52732639-52732658 Msa1332760:intron 40.0%
! GTAGCCAGTCACACAAATTT+TGG - chr8_4:52732772-52732791 Msa1332760:intron 40.0%
ATCTAGTGACTTTGAACCTG+TGG - chr8_4:52732964-52732983 Msa1332760:CDS 40.0%
GACTTTGAACCTGTGGAAAA+TGG - chr8_4:52732971-52732990 Msa1332760:CDS 40.0%
TTGTCTGACCTCTTTCTCTT+TGG + chr8_4:52733082-52733101 None:intergenic 40.0%
! ACTAGTTCTCCAGCAAAGAA+TGG + chr8_4:52733170-52733189 None:intergenic 40.0%
GCAAGTGCATAGTCAATAGT+TGG - chr8_4:52733302-52733321 Msa1332760:five_prime_UTR 40.0%
GAACATCATCTACCATCCTA+GGG + chr8_4:52733383-52733402 None:intergenic 40.0%
TGAACATCATCTACCATCCT+AGG + chr8_4:52733384-52733403 None:intergenic 40.0%
GTGTTTCAACGAGGATAGTG+TGG + chr8_4:52731186-52731205 None:intergenic 45.0%
TGACGTGGAAATGTATCGGA+CGG + chr8_4:52731226-52731245 None:intergenic 45.0%
CGTTGAAACGAGAATTCACG+CGG + chr8_4:52731254-52731273 None:intergenic 45.0%
CGCGTGAATTCTCGTTTCAA+CGG - chr8_4:52731252-52731271 Msa1332760:three_prime_UTR 45.0%
ACTGTGTTAGCGAAGAGAAG+AGG - chr8_4:52731295-52731314 Msa1332760:three_prime_UTR 45.0%
!! TTCGGTGTTGAAATCGAGCA+AGG + chr8_4:52731340-52731359 None:intergenic 45.0%
TGAAGACAATGAGGAGGATG+AGG - chr8_4:52731566-52731585 Msa1332760:CDS 45.0%
GAGGAGGATGAAGATGAAGA+AGG - chr8_4:52731627-52731646 Msa1332760:CDS 45.0%
GAGGATGAAGATGAAGAAGG+TGG - chr8_4:52731630-52731649 Msa1332760:CDS 45.0%
CTGTCATCATCATCGTCATC+AGG + chr8_4:52731684-52731703 None:intergenic 45.0%
CCCAACAAAGGAACGTGAAA+AGG + chr8_4:52732633-52732652 None:intergenic 45.0%
! TGTGACTGGCTACACAAAGA+TGG + chr8_4:52732765-52732784 None:intergenic 45.0%
TGAACCTGTGGAAAATGGTG+TGG - chr8_4:52732976-52732995 Msa1332760:CDS 45.0%
GATGAAGTGGAGGAAGATGA+AGG - chr8_4:52733004-52733023 Msa1332760:CDS 45.0%
GATGAAGGTGAGGAAGATGA+AGG - chr8_4:52733019-52733038 Msa1332760:CDS 45.0%
!! CAGTGATGATGATGGTGAGA+AGG - chr8_4:52733045-52733064 Msa1332760:CDS 45.0%
AGGTTCCACCAAAGAGAAAG+AGG - chr8_4:52733071-52733090 Msa1332760:CDS 45.0%
TCTGACCTCTTTCTCTTTGG+TGG + chr8_4:52733079-52733098 None:intergenic 45.0%
GATGATTCCGATGACGATGA+TGG - chr8_4:52733103-52733122 Msa1332760:CDS 45.0%
TTATCTTTCACCCACTCCCT+AGG - chr8_4:52733364-52733383 Msa1332760:five_prime_UTR 45.0%
GTGTTTCAACGAGGATAGTG+TGG + chr8_4:52731186-52731205 None:intergenic 45.0%
TGACGTGGAAATGTATCGGA+CGG + chr8_4:52731226-52731245 None:intergenic 45.0%
CGTTGAAACGAGAATTCACG+CGG + chr8_4:52731254-52731273 None:intergenic 45.0%
CGCGTGAATTCTCGTTTCAA+CGG - chr8_4:52731252-52731271 Msa1332760:three_prime_UTR 45.0%
ACTGTGTTAGCGAAGAGAAG+AGG - chr8_4:52731295-52731314 Msa1332760:three_prime_UTR 45.0%
!! TTCGGTGTTGAAATCGAGCA+AGG + chr8_4:52731340-52731359 None:intergenic 45.0%
TGAAGACAATGAGGAGGATG+AGG - chr8_4:52731566-52731585 Msa1332760:CDS 45.0%
GAGGAGGATGAAGATGAAGA+AGG - chr8_4:52731627-52731646 Msa1332760:CDS 45.0%
GAGGATGAAGATGAAGAAGG+TGG - chr8_4:52731630-52731649 Msa1332760:CDS 45.0%
CTGTCATCATCATCGTCATC+AGG + chr8_4:52731684-52731703 None:intergenic 45.0%
CCCAACAAAGGAACGTGAAA+AGG + chr8_4:52732633-52732652 None:intergenic 45.0%
! TGTGACTGGCTACACAAAGA+TGG + chr8_4:52732765-52732784 None:intergenic 45.0%
TGAACCTGTGGAAAATGGTG+TGG - chr8_4:52732976-52732995 Msa1332760:CDS 45.0%
GATGAAGTGGAGGAAGATGA+AGG - chr8_4:52733004-52733023 Msa1332760:CDS 45.0%
GATGAAGGTGAGGAAGATGA+AGG - chr8_4:52733019-52733038 Msa1332760:CDS 45.0%
!! CAGTGATGATGATGGTGAGA+AGG - chr8_4:52733045-52733064 Msa1332760:CDS 45.0%
AGGTTCCACCAAAGAGAAAG+AGG - chr8_4:52733071-52733090 Msa1332760:CDS 45.0%
TCTGACCTCTTTCTCTTTGG+TGG + chr8_4:52733079-52733098 None:intergenic 45.0%
GATGATTCCGATGACGATGA+TGG - chr8_4:52733103-52733122 Msa1332760:CDS 45.0%
TTATCTTTCACCCACTCCCT+AGG - chr8_4:52733364-52733383 Msa1332760:five_prime_UTR 45.0%
!!! TTTTTTTTTTTTTTTTTTGA+GGG + chr8_4:52732719-52732738 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTTTTG+AGG + chr8_4:52732720-52732739 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTTTGA+GGG + chr8_4:52732719-52732738 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTTTTG+AGG + chr8_4:52732720-52732739 None:intergenic 5.0%
! GATAGTGTGGTTGAGCGTTG+CGG + chr8_4:52731173-52731192 None:intergenic 50.0%
!! ATTCACGCGGATTGATGACG+TGG + chr8_4:52731241-52731260 None:intergenic 50.0%
GAAGCAAGTGGAGGAAAGTG+AGG - chr8_4:52731446-52731465 Msa1332760:CDS 50.0%
GATGAGGATGACGACGATGA+AGG - chr8_4:52731582-52731601 Msa1332760:CDS 50.0%
! GATGACGACGATGAAGGTAC+TGG - chr8_4:52731588-52731607 Msa1332760:CDS 50.0%
GAAGAAGGTGGAACAGCTGA+AGG - chr8_4:52731642-52731661 Msa1332760:CDS 50.0%
! TCGTCCACACCATTTTCCAC+AGG + chr8_4:52732983-52733002 None:intergenic 50.0%
TGGTGTGGACGAAGATGAAG+TGG - chr8_4:52732991-52733010 Msa1332760:CDS 50.0%
TGTGGACGAAGATGAAGTGG+AGG - chr8_4:52732994-52733013 Msa1332760:CDS 50.0%
AGTGGAGGAAGATGAAGGTG+AGG - chr8_4:52733009-52733028 Msa1332760:CDS 50.0%
GAAGGTGAGGAAGATGAAGG+TGG - chr8_4:52733022-52733041 Msa1332760:CDS 50.0%
! GAAGGTGGCAGTGATGATGA+TGG - chr8_4:52733037-52733056 Msa1332760:CDS 50.0%
!! TGATGATGGTGAGAAGGCTG+AGG - chr8_4:52733051-52733070 Msa1332760:CDS 50.0%
! GATTCCGATGACGATGATGG+AGG - chr8_4:52733106-52733125 Msa1332760:CDS 50.0%
CTCTCCTCCATCATCGTCAT+CGG + chr8_4:52733113-52733132 None:intergenic 50.0%
CATCTACCATCCTAGGGAGT+GGG + chr8_4:52733377-52733396 None:intergenic 50.0%
TCATCTACCATCCTAGGGAG+TGG + chr8_4:52733378-52733397 None:intergenic 50.0%
! GATAGTGTGGTTGAGCGTTG+CGG + chr8_4:52731173-52731192 None:intergenic 50.0%
!! ATTCACGCGGATTGATGACG+TGG + chr8_4:52731241-52731260 None:intergenic 50.0%
GAAGCAAGTGGAGGAAAGTG+AGG - chr8_4:52731446-52731465 Msa1332760:CDS 50.0%
GATGAGGATGACGACGATGA+AGG - chr8_4:52731582-52731601 Msa1332760:CDS 50.0%
! GATGACGACGATGAAGGTAC+TGG - chr8_4:52731588-52731607 Msa1332760:CDS 50.0%
GAAGAAGGTGGAACAGCTGA+AGG - chr8_4:52731642-52731661 Msa1332760:CDS 50.0%
! TCGTCCACACCATTTTCCAC+AGG + chr8_4:52732983-52733002 None:intergenic 50.0%
TGGTGTGGACGAAGATGAAG+TGG - chr8_4:52732991-52733010 Msa1332760:CDS 50.0%
TGTGGACGAAGATGAAGTGG+AGG - chr8_4:52732994-52733013 Msa1332760:CDS 50.0%
AGTGGAGGAAGATGAAGGTG+AGG - chr8_4:52733009-52733028 Msa1332760:CDS 50.0%
GAAGGTGAGGAAGATGAAGG+TGG - chr8_4:52733022-52733041 Msa1332760:CDS 50.0%
! GAAGGTGGCAGTGATGATGA+TGG - chr8_4:52733037-52733056 Msa1332760:CDS 50.0%
!! TGATGATGGTGAGAAGGCTG+AGG - chr8_4:52733051-52733070 Msa1332760:CDS 50.0%
! GATTCCGATGACGATGATGG+AGG - chr8_4:52733106-52733125 Msa1332760:CDS 50.0%
CTCTCCTCCATCATCGTCAT+CGG + chr8_4:52733113-52733132 None:intergenic 50.0%
CATCTACCATCCTAGGGAGT+GGG + chr8_4:52733377-52733396 None:intergenic 50.0%
TCATCTACCATCCTAGGGAG+TGG + chr8_4:52733378-52733397 None:intergenic 50.0%
!! GACGACGATGAAGGTACTGG+CGG - chr8_4:52731591-52731610 Msa1332760:CDS 55.0%
! TGGCGGTGGTGATGAAGATG+AGG - chr8_4:52731608-52731627 Msa1332760:CDS 55.0%
! CGGTGGTGATGAAGATGAGG+AGG - chr8_4:52731611-52731630 Msa1332760:CDS 55.0%
GGATGACGATGAAGACGACG+AGG - chr8_4:52731716-52731735 Msa1332760:intron 55.0%
AGACGACGAGGACGATGATG+AGG - chr8_4:52731728-52731747 Msa1332760:intron 55.0%
CGATGATGAGGAGGAGAACG+AGG - chr8_4:52731740-52731759 Msa1332760:intron 55.0%
TGAGGAGGAGAACGAGGAAG+AGG - chr8_4:52731746-52731765 Msa1332760:intron 55.0%
GGAGAACGAGGAAGAGGAAC+AGG - chr8_4:52731752-52731771 Msa1332760:intron 55.0%
GAGTATCTTGTCCGCCCTCT+AGG - chr8_4:52732920-52732939 Msa1332760:CDS 55.0%
!! CGATGACGATGATGGAGGAG+AGG - chr8_4:52733111-52733130 Msa1332760:CDS 55.0%
CTTTCACCCACTCCCTAGGA+TGG - chr8_4:52733368-52733387 Msa1332760:five_prime_UTR 55.0%
!! GACGACGATGAAGGTACTGG+CGG - chr8_4:52731591-52731610 Msa1332760:CDS 55.0%
! TGGCGGTGGTGATGAAGATG+AGG - chr8_4:52731608-52731627 Msa1332760:CDS 55.0%
! CGGTGGTGATGAAGATGAGG+AGG - chr8_4:52731611-52731630 Msa1332760:CDS 55.0%
GGATGACGATGAAGACGACG+AGG - chr8_4:52731716-52731735 Msa1332760:intron 55.0%
AGACGACGAGGACGATGATG+AGG - chr8_4:52731728-52731747 Msa1332760:intron 55.0%
CGATGATGAGGAGGAGAACG+AGG - chr8_4:52731740-52731759 Msa1332760:intron 55.0%
TGAGGAGGAGAACGAGGAAG+AGG - chr8_4:52731746-52731765 Msa1332760:intron 55.0%
GGAGAACGAGGAAGAGGAAC+AGG - chr8_4:52731752-52731771 Msa1332760:intron 55.0%
GAGTATCTTGTCCGCCCTCT+AGG - chr8_4:52732920-52732939 Msa1332760:CDS 55.0%
!! CGATGACGATGATGGAGGAG+AGG - chr8_4:52733111-52733130 Msa1332760:CDS 55.0%
CTTTCACCCACTCCCTAGGA+TGG - chr8_4:52733368-52733387 Msa1332760:five_prime_UTR 55.0%
!! GACGATGAAGGTACTGGCGG+TGG - chr8_4:52731594-52731613 Msa1332760:CDS 60.0%
! GGAACAGCTGAAGGTGCACG+TGG - chr8_4:52731651-52731670 Msa1332760:CDS 60.0%
! ACAGCTGAAGGTGCACGTGG+TGG - chr8_4:52731654-52731673 Msa1332760:CDS 60.0%
CGACGAGGACGATGATGAGG+AGG - chr8_4:52731731-52731750 Msa1332760:intron 60.0%
CCTCCTCAGCAGCACCTAGA+GGG + chr8_4:52732937-52732956 None:intergenic 60.0%
TCCTCCTCAGCAGCACCTAG+AGG + chr8_4:52732938-52732957 None:intergenic 60.0%
!! TCTAGGTGCTGCTGAGGAGG+AGG - chr8_4:52732937-52732956 Msa1332760:CDS 60.0%
!! GACGATGAAGGTACTGGCGG+TGG - chr8_4:52731594-52731613 Msa1332760:CDS 60.0%
! GGAACAGCTGAAGGTGCACG+TGG - chr8_4:52731651-52731670 Msa1332760:CDS 60.0%
! ACAGCTGAAGGTGCACGTGG+TGG - chr8_4:52731654-52731673 Msa1332760:CDS 60.0%
CGACGAGGACGATGATGAGG+AGG - chr8_4:52731731-52731750 Msa1332760:intron 60.0%
CCTCCTCAGCAGCACCTAGA+GGG + chr8_4:52732937-52732956 None:intergenic 60.0%
TCCTCCTCAGCAGCACCTAG+AGG + chr8_4:52732938-52732957 None:intergenic 60.0%
!! TCTAGGTGCTGCTGAGGAGG+AGG - chr8_4:52732937-52732956 Msa1332760:CDS 60.0%
CCTCAGCAGCACCTAGAGGG+CGG + chr8_4:52732934-52732953 None:intergenic 65.0%
!! CCCTCTAGGTGCTGCTGAGG+AGG - chr8_4:52732934-52732953 Msa1332760:CDS 65.0%
CCTCAGCAGCACCTAGAGGG+CGG + chr8_4:52732934-52732953 None:intergenic 65.0%
!! CCCTCTAGGTGCTGCTGAGG+AGG - chr8_4:52732934-52732953 Msa1332760:CDS 65.0%
!! CCGCCCTCTAGGTGCTGCTG+AGG - chr8_4:52732931-52732950 Msa1332760:CDS 70.0%
!! CCGCCCTCTAGGTGCTGCTG+AGG - chr8_4:52732931-52732950 Msa1332760:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 52731163 52733433 52731163 ID=Msa1332760;Name=Msa1332760
chr8_4 mRNA 52731163 52733433 52731163 ID=Msa1332760-mRNA-1;Parent=Msa1332760;Name=Msa1332760-mRNA-1;_AED=0.00;_eAED=0.00;_QI=254|1|1|1|1|1|2|268|205
chr8_4 exon 52731163 52731691 52731163 ID=Msa1332760-mRNA-1:exon:15933;Parent=Msa1332760-mRNA-1
chr8_4 exon 52732823 52733433 52732823 ID=Msa1332760-mRNA-1:exon:15932;Parent=Msa1332760-mRNA-1
chr8_4 five_prime_UTR 52733180 52733433 52733180 ID=Msa1332760-mRNA-1:five_prime_utr;Parent=Msa1332760-mRNA-1
chr8_4 CDS 52732823 52733179 52732823 ID=Msa1332760-mRNA-1:cds;Parent=Msa1332760-mRNA-1
chr8_4 CDS 52731431 52731691 52731431 ID=Msa1332760-mRNA-1:cds;Parent=Msa1332760-mRNA-1
chr8_4 three_prime_UTR 52731163 52731430 52731163 ID=Msa1332760-mRNA-1:three_prime_utr;Parent=Msa1332760-mRNA-1
Gene Sequence

>Msa1332760

ATGAAGTTAACCGAGGAATTGAATTTGAAGAAGCAAGTGGAGGAAAGTGAGGTTATTGTTTTGAGTGAGGATGATGAAGAAATTGAGTCAGTTGAAGAAGTAGTTGATGGAGAAGACAGTGAAGATGATGAAGGTGATGAGTATGATGATGAAGACAATGAGGAGGATGAGGATGACGACGATGAAGGTACTGGCGGTGGTGATGAAGATGAGGAGGATGAAGATGAAGAAGGTGGAACAGCTGAAGGTGCACGTGGTGGTGATCCTGATGACGATGATGATGACAGTGACAATGATGAGGATGACGATGAAGACGACGAGGACGATGATGAGGAGGAGAACGAGGAAGAGGAACAGGAGGATTTGGGAACAGAGTATCTTGTCCGCCCTCTAGGTGCTGCTGAGGAGGAGGAAGCATCTAGTGACTTTGAACCTGTGGAAAATGGTGTGGACGAAGATGAAGTGGAGGAAGATGAAGGTGAGGAAGATGAAGGTGGCAGTGATGATGATGGTGAGAAGGCTGAGGTTCCACCAAAGAGAAAGAGGTCAGACAAAGATGATTCCGATGACGATGATGGAGGAGAGGATGATGTAAGACCCTCTAAACGATATAGTTAG

Protein sequence

>Msa1332760

MKLTEELNLKKQVEESEVIVLSEDDEEIESVEEVVDGEDSEDDEGDEYDDEDNEEDEDDDDEGTGGGDEDEEDEDEEGGTAEGARGGDPDDDDDDSDNDEDDDEDDEDDDEEENEEEEQEDLGTEYLVRPLGAAEEEEASSDFEPVENGVDEDEVEEDEGEEDEGGSDDDGEKAEVPPKRKRSDKDDSDDDDGGEDDVRPSKRYS*