Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0952210 | XP_013452304.1 | 99.428 | 699 | 4 | 0 | 1 | 699 | 1 | 699 | 0.0 | 1417 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0952210 | sp|P51819|HSP83_IPONI | 93.276 | 699 | 46 | 1 | 1 | 699 | 6 | 703 | 0.0 | 1231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0644240 | Msa0952210 | 0.813268 | 2.789489e-51 | -8.615850e-47 |
| Msa0548300 | Msa0952210 | 0.818291 | 2.116651e-52 | -8.615850e-47 |
| Msa0887720 | Msa0952210 | 0.877111 | 8.166870e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0952210 | MtrunA17_Chr6g0469201 | 99.428 | 699 | 4 | 0 | 1 | 699 | 1 | 699 | 0.0 | 1417 |
| Msa0952210 | MtrunA17_Chr1g0202601 | 91.000 | 700 | 39 | 3 | 1 | 699 | 6 | 682 | 0.0 | 1197 |
| Msa0952210 | MtrunA17_Chr5g0446951 | 88.017 | 701 | 80 | 3 | 1 | 699 | 1 | 699 | 0.0 | 1153 |
| Msa0952210 | MtrunA17_Chr5g0446941 | 88.017 | 701 | 80 | 3 | 1 | 699 | 1 | 699 | 0.0 | 1153 |
| Msa0952210 | MtrunA17_Chr1g0156731 | 48.805 | 711 | 318 | 8 | 2 | 673 | 75 | 778 | 0.0 | 657 |
| Msa0952210 | MtrunA17_Chr5g0447581 | 46.824 | 677 | 338 | 10 | 4 | 668 | 89 | 755 | 0.0 | 596 |
| Msa0952210 | MtrunA17_Chr5g0420861 | 45.575 | 678 | 344 | 11 | 4 | 668 | 81 | 746 | 0.0 | 572 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0952210 | AT5G52640.1 | 91.000 | 700 | 62 | 1 | 1 | 699 | 1 | 700 | 0.0 | 1228 |
| Msa0952210 | AT5G56000.1 | 86.143 | 700 | 95 | 2 | 1 | 699 | 1 | 699 | 0.0 | 1160 |
| Msa0952210 | AT5G56030.1 | 86.857 | 700 | 90 | 2 | 1 | 699 | 1 | 699 | 0.0 | 1155 |
| Msa0952210 | AT5G56010.1 | 86.571 | 700 | 92 | 2 | 1 | 699 | 1 | 699 | 0.0 | 1151 |
| Msa0952210 | AT5G56030.2 | 83.402 | 729 | 90 | 3 | 1 | 699 | 1 | 728 | 0.0 | 1140 |
| Msa0952210 | AT4G24190.2 | 49.364 | 707 | 318 | 7 | 2 | 673 | 74 | 775 | 0.0 | 653 |
| Msa0952210 | AT4G24190.1 | 49.364 | 707 | 318 | 7 | 2 | 673 | 74 | 775 | 0.0 | 652 |
| Msa0952210 | AT3G07770.1 | 47.050 | 678 | 337 | 10 | 4 | 669 | 94 | 761 | 0.0 | 607 |
| Msa0952210 | AT3G07770.3 | 47.050 | 678 | 337 | 10 | 4 | 669 | 94 | 761 | 0.0 | 607 |
| Msa0952210 | AT3G07770.2 | 47.050 | 678 | 337 | 10 | 4 | 669 | 94 | 761 | 0.0 | 607 |
| Msa0952210 | AT2G04030.1 | 47.647 | 680 | 327 | 12 | 2 | 668 | 74 | 737 | 0.0 | 606 |
| Msa0952210 | AT2G04030.2 | 47.198 | 678 | 330 | 12 | 2 | 668 | 74 | 734 | 0.0 | 596 |
Find 174 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATAGTGTGGAGTGTTTC+TGG | 0.101308 | 6_3:-45783498 | None:intergenic |
| CACACCTTCTTCTTCCTTCT+TGG | 0.101531 | 6_3:-45785726 | None:intergenic |
| TGAGGGGCAGCTTGAATTTA+AGG | 0.150591 | 6_3:+45785955 | Msa0952210:CDS |
| TTTCTCAAAGAATTTGAAAT+TGG | 0.159756 | 6_3:+45786282 | Msa0952210:CDS |
| CTTCTGCCCTTCTTTCATTC+TGG | 0.190465 | 6_3:-45786407 | None:intergenic |
| TCATCCTTGGTGATCTCTTC+TGG | 0.247953 | 6_3:-45785863 | None:intergenic |
| TTCACAAATCCAAGGTATTC+AGG | 0.262791 | 6_3:-45786097 | None:intergenic |
| AAGGACATTTACTACATTAC+TGG | 0.272569 | 6_3:+45786427 | Msa0952210:CDS |
| TCTTCCATAATGCCATTATC+AGG | 0.278158 | 6_3:-45786877 | None:intergenic |
| TTCTCGGTCCAAAGGTAAAT+TGG | 0.288081 | 6_3:-45785662 | None:intergenic |
| CAACCCTGATAATGGCATTA+TGG | 0.300773 | 6_3:+45786873 | Msa0952210:CDS |
| GATGAACCAAACACCTTTGC+TGG | 0.301565 | 6_3:+45787000 | Msa0952210:CDS |
| TGGATTCTACTCTGCTTATC+TGG | 0.302305 | 6_3:+45784938 | Msa0952210:CDS |
| CTCTTTCTCAGTAGTCTTCT+CGG | 0.302709 | 6_3:-45785678 | None:intergenic |
| TATAGATTGGAATGTTAATA+TGG | 0.312039 | 6_3:+45787155 | Msa0952210:three_prime_UTR |
| ACACCTTCTTCTTCCTTCTT+GGG | 0.312537 | 6_3:-45785725 | None:intergenic |
| AGAGTACGACGGGAAGAAAT+TGG | 0.333339 | 6_3:+45786564 | Msa0952210:CDS |
| TGAAGGCTTTGGACAAAATT+CGG | 0.333528 | 6_3:+45784278 | Msa0952210:intron |
| GTCTTGATAGTTATGGGTGT+TGG | 0.339488 | 6_3:+45787207 | Msa0952210:three_prime_UTR |
| TCCAGAACGTTCTGTTAGTA+TGG | 0.351745 | 6_3:-45783397 | None:intergenic |
| CAGCAAGTTTAGCCCTGTTC+TGG | 0.354753 | 6_3:-45786321 | None:intergenic |
| TTTGAGGAAAAGAGTGATCT+TGG | 0.357250 | 6_3:-45785084 | None:intergenic |
| GGAGTTCATGGAGGCATTGC+AGG | 0.360168 | 6_3:+45784878 | Msa0952210:CDS |
| CTTGGAAGAGAGGAGAATTA+AGG | 0.370684 | 6_3:+45785604 | Msa0952210:CDS |
| ATGGAAATCAACCCTGATAA+TGG | 0.371034 | 6_3:+45786865 | Msa0952210:CDS |
| TTCTCAAAGAATTTGAAATT+GGG | 0.375877 | 6_3:+45786283 | Msa0952210:CDS |
| GTGAGCATGATTGGTCAATT+TGG | 0.377726 | 6_3:+45784912 | Msa0952210:CDS |
| CAGGGTCATGAAGGAAATCT+TGG | 0.380225 | 6_3:+45786681 | Msa0952210:CDS |
| TTAGCTATCCAATTTACCTT+TGG | 0.384432 | 6_3:+45785654 | Msa0952210:CDS |
| ACAAGATCTTGAAGGTGATT+AGG | 0.388807 | 6_3:+45786179 | Msa0952210:CDS |
| TTGACTAAAAGCTTATAGAT+TGG | 0.390497 | 6_3:+45787142 | Msa0952210:exon |
| GGGCTATGAAGTTCTCTTCA+TGG | 0.391949 | 6_3:+45786504 | Msa0952210:CDS |
| GTGAAGCATTTCTCTGTTGA+GGG | 0.392948 | 6_3:+45785938 | Msa0952210:CDS |
| CAAATGTTCTTCCCAGTCAT+TGG | 0.393440 | 6_3:-45785912 | None:intergenic |
| CATTACTGGAGAAAGCAAAA+AGG | 0.394098 | 6_3:+45786441 | Msa0952210:CDS |
| ATCCTTCCAGCAAAGGTGTT+TGG | 0.396070 | 6_3:-45787006 | None:intergenic |
| GTCTGGAACCAAGGAGTTCA+TGG | 0.398629 | 6_3:+45784866 | Msa0952210:CDS |
| CTGAGGGACAGCAGCATGGC+AGG | 0.404400 | 6_3:+45786820 | Msa0952210:CDS |
| CAATGACTGGGAAGAACATT+TGG | 0.404959 | 6_3:+45785913 | Msa0952210:CDS |
| ACTGATAAGAGTAAGCTTGA+TGG | 0.406274 | 6_3:+45784313 | Msa0952210:CDS |
| CCTTTGCTGGAAGGATTCAT+AGG | 0.408465 | 6_3:+45787013 | Msa0952210:CDS |
| TGTTGATTCTCCATGCTGTT+TGG | 0.410104 | 6_3:+45786741 | Msa0952210:CDS |
| AGAGTGTTGTTGGCTTTGTC+AGG | 0.410966 | 6_3:-45784364 | None:intergenic |
| TCTTGATAGTTATGGGTGTT+GGG | 0.417519 | 6_3:+45787208 | Msa0952210:three_prime_UTR |
| GGAAGAAGAAGGTGTGGTCG+AGG | 0.418375 | 6_3:+45785733 | Msa0952210:CDS |
| CTAAACTTGCTGATTTGCTT+AGG | 0.419861 | 6_3:+45786332 | Msa0952210:CDS |
| TGTGGAAAACTCTCCATTCT+TGG | 0.421410 | 6_3:+45786465 | Msa0952210:CDS |
| CATCACCACTCTTGGTAGAA+TGG | 0.422395 | 6_3:-45786357 | None:intergenic |
| CTCATCATCATTGTGCTTGG+TGG | 0.423723 | 6_3:-45784982 | None:intergenic |
| TGTGAAGCATTTCTCTGTTG+AGG | 0.428133 | 6_3:+45785937 | Msa0952210:CDS |
| TTATGAACAGTTGGAATACT+TGG | 0.429942 | 6_3:+45785586 | Msa0952210:intron |
| ACCATACTAACAGAACGTTC+TGG | 0.433014 | 6_3:+45783396 | Msa0952210:five_prime_UTR |
| TCTGGCTTACGTAGCCAGAT+TGG | 0.433880 | 6_3:-45785845 | None:intergenic |
| AGTTGTGAGATTACCTGCTT+TGG | 0.434766 | 6_3:-45784416 | None:intergenic |
| TCCATCATTGACAGTGGCAT+TGG | 0.438096 | 6_3:+45784388 | Msa0952210:CDS |
| ACAATATCAAGCTCTATGTT+AGG | 0.438106 | 6_3:+45786038 | Msa0952210:CDS |
| TTCATGAAGATAGCCAGAAC+AGG | 0.438466 | 6_3:+45786308 | Msa0952210:CDS |
| GATTCATAGGATGTTGAAGT+TGG | 0.444651 | 6_3:+45787026 | Msa0952210:CDS |
| TTGGGTACTATTGCGAGGTC+TGG | 0.447368 | 6_3:+45784849 | Msa0952210:CDS |
| TGATGATGAGCAATACGTTT+GGG | 0.456896 | 6_3:+45784995 | Msa0952210:CDS |
| TCCAATGCCACTGTCAATGA+TGG | 0.459853 | 6_3:-45784389 | None:intergenic |
| GGTGCAGATGTGAGCATGAT+TGG | 0.459913 | 6_3:+45784903 | Msa0952210:CDS |
| GGAAATCTTGGGAGATAAAG+TGG | 0.461575 | 6_3:+45786693 | Msa0952210:CDS |
| TTCTTCAGTCTCTCCAAGAA+TGG | 0.464380 | 6_3:-45786478 | None:intergenic |
| CAATGCCTCCATGAACTCCT+TGG | 0.465652 | 6_3:-45784874 | None:intergenic |
| AGCATTGATGAGGATGAAAC+TGG | 0.466923 | 6_3:+45787054 | Msa0952210:CDS |
| AGTCATTTCATCACCACTCT+TGG | 0.469040 | 6_3:-45786365 | None:intergenic |
| TCTCGATCGAGTTTCTTCAA+TGG | 0.470383 | 6_3:+45783646 | Msa0952210:exon |
| TTTAGATTTGGTGAACAACT+TGG | 0.471473 | 6_3:+45784830 | Msa0952210:intron |
| ATGATGATGAGCAATACGTT+TGG | 0.474057 | 6_3:+45784994 | Msa0952210:CDS |
| AAAGTACCTGATCCTCTTTG+AGG | 0.479157 | 6_3:-45785100 | None:intergenic |
| GGCATTGGAATGACCAAAGC+AGG | 0.484062 | 6_3:+45784403 | Msa0952210:CDS |
| TATTGCGAGGTCTGGAACCA+AGG | 0.488111 | 6_3:+45784857 | Msa0952210:CDS |
| TCTCCATGCTGTTTGGTGAC+CGG | 0.488224 | 6_3:+45786748 | Msa0952210:CDS |
| GGAGAAGAAGAAATCCTTTG+AGG | 0.489750 | 6_3:+45786651 | Msa0952210:CDS |
| CATGTCGAGCAAGAAAACTA+TGG | 0.491466 | 6_3:+45786846 | Msa0952210:CDS |
| TTCATGGAGGCATTGCAGGC+TGG | 0.508382 | 6_3:+45784882 | Msa0952210:CDS |
| TCAACAAGCAGAAACCAATC+TGG | 0.509284 | 6_3:+45785831 | Msa0952210:CDS |
| AATCCTTTGAGGATCTCTGC+AGG | 0.509662 | 6_3:+45786662 | Msa0952210:CDS |
| AATGATGGAAAGAGTGTTGT+TGG | 0.510020 | 6_3:-45784374 | None:intergenic |
| CTAGTATCAAACAAATCAAA+GGG | 0.512956 | 6_3:-45786004 | None:intergenic |
| AGGGTCATGAAGGAAATCTT+GGG | 0.514742 | 6_3:+45786682 | Msa0952210:CDS |
| TCTAGTATCAAACAAATCAA+AGG | 0.514799 | 6_3:-45786005 | None:intergenic |
| ATTCATAGGATGTTGAAGTT+GGG | 0.514925 | 6_3:+45787027 | Msa0952210:CDS |
| TGATAATCAAACTAAGAAGT+TGG | 0.515106 | 6_3:-45783706 | None:intergenic |
| CAATGAGATTGCTGAGAACA+AGG | 0.515182 | 6_3:+45786234 | Msa0952210:CDS |
| TGTTTGGTGACCGGCGAATA+CGG | 0.516052 | 6_3:+45786757 | Msa0952210:CDS |
| CAAAGGTGTTTGGTTCATCA+AGG | 0.517696 | 6_3:-45786996 | None:intergenic |
| ACAAGAGCCTAACCAATGAC+TGG | 0.518480 | 6_3:+45785900 | Msa0952210:CDS |
| CTGAAGGTGAACAACTTGGT+AGG | 0.518707 | 6_3:+45785057 | Msa0952210:CDS |
| AACAAAGGAAGGACTGAAGC+TGG | 0.524548 | 6_3:+45786594 | Msa0952210:CDS |
| TGTTAGGAGGGTGTTCATCA+TGG | 0.527101 | 6_3:+45786054 | Msa0952210:CDS |
| CATGAAGGCTCAAGCTCTGA+GGG | 0.528593 | 6_3:+45786804 | Msa0952210:CDS |
| GTTCTTCCCAGTCATTGGTT+AGG | 0.532125 | 6_3:-45785907 | None:intergenic |
| TTATGGAAGAGTTGAGGAAG+AGG | 0.533445 | 6_3:+45786890 | Msa0952210:CDS |
| GAAATTGGTTTCAGCAACAA+AGG | 0.533588 | 6_3:+45786579 | Msa0952210:CDS |
| GAAAGCAGCATATTCATCCT+TGG | 0.533712 | 6_3:-45785876 | None:intergenic |
| TGAAGGTGAACAACTTGGTA+GGG | 0.535597 | 6_3:+45785058 | Msa0952210:CDS |
| ATACGGATGGACTGCTAACA+TGG | 0.536018 | 6_3:+45786774 | Msa0952210:CDS |
| TTGGTTTCAGCAACAAAGGA+AGG | 0.536532 | 6_3:+45786583 | Msa0952210:CDS |
| GAAGTTGGTTAATCTCAGCT+TGG | 0.537046 | 6_3:-45783691 | None:intergenic |
| GCAACAGAACAAGATCTTGA+AGG | 0.537336 | 6_3:+45786171 | Msa0952210:CDS |
| TGGTGCTGAGGAGAGCAAGA+TGG | 0.537641 | 6_3:+45787113 | Msa0952210:CDS |
| TGATGAAATGACTAGCTTGA+AGG | 0.540040 | 6_3:+45786375 | Msa0952210:CDS |
| AGAAGGTGGTTGTCTCTGAC+AGG | 0.540339 | 6_3:+45786716 | Msa0952210:CDS |
| TCAGCACCATCTTCTTCCAA+TGG | 0.546256 | 6_3:-45787099 | None:intergenic |
| TAAGGAGGTTTCTCATGAGT+GGG | 0.546729 | 6_3:+45785802 | Msa0952210:CDS |
| ATATCAAGCTCTATGTTAGG+AGG | 0.547012 | 6_3:+45786041 | Msa0952210:CDS |
| CTTGGAGAGACTGAAGAAGA+GGG | 0.547661 | 6_3:+45786483 | Msa0952210:CDS |
| TTGCTCATCATCATTGTGCT+TGG | 0.548971 | 6_3:-45784985 | None:intergenic |
| TGATGTTGATATGCCTCCAT+TGG | 0.549356 | 6_3:+45787083 | Msa0952210:CDS |
| GACAACTGAAAGAGTACGAC+GGG | 0.549601 | 6_3:+45786554 | Msa0952210:CDS |
| GATACTGAAGGTGAACAACT+TGG | 0.550229 | 6_3:+45785053 | Msa0952210:CDS |
| CTTGGGAGATAAAGTGGAGA+AGG | 0.557213 | 6_3:+45786699 | Msa0952210:CDS |
| AACCAAACACCTTTGCTGGA+AGG | 0.560553 | 6_3:+45787004 | Msa0952210:CDS |
| CGATCGAGTTTCTTCAATGG+CGG | 0.562456 | 6_3:+45783649 | Msa0952210:exon |
| CGAGGAAGTTGATGAGGACA+AGG | 0.563541 | 6_3:+45785751 | Msa0952210:CDS |
| GGGAGATAAAGTGGAGAAGG+TGG | 0.565582 | 6_3:+45786702 | Msa0952210:CDS |
| ATGATTGGTCAATTTGGTGT+TGG | 0.565654 | 6_3:+45784918 | Msa0952210:CDS |
| TTGGTTAATCTCAGCTTGGA+AGG | 0.566535 | 6_3:-45783687 | None:intergenic |
| AGGGATGGTGTGAAGTGATA+CGG | 0.567487 | 6_3:-45783436 | None:intergenic |
| TTAGATTTGGTGAACAACTT+GGG | 0.568161 | 6_3:+45784831 | Msa0952210:intron |
| CTTCCATAATGCCATTATCA+GGG | 0.568326 | 6_3:-45786876 | None:intergenic |
| CAGTAGTCTTCTCGGTCCAA+AGG | 0.574286 | 6_3:-45785670 | None:intergenic |
| TGAAGCATTTCTCTGTTGAG+GGG | 0.577926 | 6_3:+45785939 | Msa0952210:CDS |
| TGGTGACCGGCGAATACGGA+TGG | 0.582292 | 6_3:+45786761 | Msa0952210:CDS |
| TATGTCACCAGAATGAAAGA+AGG | 0.583254 | 6_3:+45786400 | Msa0952210:CDS |
| GGATCTCTGCAGGGTCATGA+AGG | 0.584786 | 6_3:+45786672 | Msa0952210:CDS |
| TTAAGGAGGTTTCTCATGAG+TGG | 0.586380 | 6_3:+45785801 | Msa0952210:CDS |
| GAGCTCATACCTGAATACCT+TGG | 0.588687 | 6_3:+45786088 | Msa0952210:CDS |
| TACGTTTGGGAATCACAAGC+TGG | 0.590022 | 6_3:+45785008 | Msa0952210:CDS |
| GAGCCCAAGAAGGAAGAAGA+AGG | 0.591409 | 6_3:+45785722 | Msa0952210:CDS |
| GCTATCGATGAGTATGCTGT+TGG | 0.592094 | 6_3:+45786532 | Msa0952210:CDS |
| CCTATGAATCCTTCCAGCAA+AGG | 0.593754 | 6_3:-45787013 | None:intergenic |
| CAGAATGAAAGAAGGGCAGA+AGG | 0.594937 | 6_3:+45786408 | Msa0952210:CDS |
| AGTTGGAATACTTGGAAGAG+AGG | 0.595514 | 6_3:+45785594 | Msa0952210:intron |
| TCTTGGAGAGACTGAAGAAG+AGG | 0.595964 | 6_3:+45786482 | Msa0952210:CDS |
| GAATACCTTGGATTTGTGAA+AGG | 0.603708 | 6_3:+45786100 | Msa0952210:CDS |
| TCGCCGGTCACCAAACAGCA+TGG | 0.612361 | 6_3:-45786751 | None:intergenic |
| AGCAGTCCATCCGTATTCGC+CGG | 0.613705 | 6_3:-45786767 | None:intergenic |
| ATGCCTCCATTGGAAGAAGA+TGG | 0.616046 | 6_3:+45787093 | Msa0952210:CDS |
| TATCAAGCTCTATGTTAGGA+GGG | 0.617985 | 6_3:+45786042 | Msa0952210:CDS |
| CAAGAGCCTAACCAATGACT+GGG | 0.619606 | 6_3:+45785901 | Msa0952210:CDS |
| GACCCTGCAGAGATCCTCAA+AGG | 0.619721 | 6_3:-45786665 | None:intergenic |
| CAACACCTTTCACAAATCCA+AGG | 0.619744 | 6_3:-45786105 | None:intergenic |
| AGCTCTGAGGGACAGCAGCA+TGG | 0.620902 | 6_3:+45786816 | Msa0952210:CDS |
| ATCTCACGAGAGATGTTAAG+CGG | 0.621516 | 6_3:-45786145 | None:intergenic |
| ATCCTTTGAGGATCTCTGCA+GGG | 0.622482 | 6_3:+45786663 | Msa0952210:CDS |
| ATGGCATTATGGAAGAGTTG+AGG | 0.622579 | 6_3:+45786884 | Msa0952210:CDS |
| GCACCATCTTCTTCCAATGG+AGG | 0.624744 | 6_3:-45787096 | None:intergenic |
| TCATGAAGGCTCAAGCTCTG+AGG | 0.626453 | 6_3:+45786803 | Msa0952210:CDS |
| ATGTCACCAGAATGAAAGAA+GGG | 0.627317 | 6_3:+45786401 | Msa0952210:CDS |
| ATTGGAAGAAGATGGTGCTG+AGG | 0.630811 | 6_3:+45787101 | Msa0952210:CDS |
| CAAGAAGGAAGAAGAAGGTG+TGG | 0.636436 | 6_3:+45785727 | Msa0952210:CDS |
| TGCTGAGGAGAGCAAGATGG+AGG | 0.636599 | 6_3:+45787116 | Msa0952210:CDS |
| TGAAGATGATGAGCCCAAGA+AGG | 0.641724 | 6_3:+45785712 | Msa0952210:CDS |
| TGTGGTCGAGGAAGTTGATG+AGG | 0.643052 | 6_3:+45785745 | Msa0952210:CDS |
| GAAGGTGAACAACTTGGTAG+GGG | 0.643370 | 6_3:+45785059 | Msa0952210:CDS |
| CAACACTTTCTATAGCAACA+AGG | 0.645825 | 6_3:+45783727 | Msa0952210:CDS |
| TAACATGGAGAGAATCATGA+AGG | 0.650550 | 6_3:+45786789 | Msa0952210:CDS |
| AGGTACCATTCTACCAAGAG+TGG | 0.654561 | 6_3:+45786352 | Msa0952210:CDS |
| ACTGTTACAAGAGATACTGA+AGG | 0.664903 | 6_3:+45785041 | Msa0952210:CDS |
| ACAACTTGGGTACTATTGCG+AGG | 0.667074 | 6_3:+45784844 | Msa0952210:CDS |
| TCATGAAGATAGCCAGAACA+GGG | 0.671210 | 6_3:+45786309 | Msa0952210:CDS |
| ACTCTTTCCATCATTGACAG+TGG | 0.673727 | 6_3:+45784382 | Msa0952210:CDS |
| GAAGCTGGATGATGAAACTG+AGG | 0.675040 | 6_3:+45786609 | Msa0952210:CDS |
| GTTTGGGAATCACAAGCTGG+TGG | 0.681490 | 6_3:+45785011 | Msa0952210:CDS |
| GTTGGGTCTTAGCATTGATG+AGG | 0.684305 | 6_3:+45787044 | Msa0952210:CDS |
| TTGGAGAGACTGAAGAAGAG+GGG | 0.684554 | 6_3:+45786484 | Msa0952210:CDS |
| GCTGGATGATGAAACTGAGG+AGG | 0.701189 | 6_3:+45786612 | Msa0952210:CDS |
| GGACAACTGAAAGAGTACGA+CGG | 0.721123 | 6_3:+45786553 | Msa0952210:CDS |
| GTTCATCATGGACAACTGCG+AGG | 0.727487 | 6_3:+45786066 | Msa0952210:CDS |
| TGGAACCAAGGAGTTCATGG+AGG | 0.751607 | 6_3:+45784869 | Msa0952210:CDS |
| TAAGCCAGAAGAGATCACCA+AGG | 0.796849 | 6_3:+45785859 | Msa0952210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATTTTTTTTTTTTTTTG+AGG | + | chr6_3:45783941-45783960 | Msa0952210:intron | 10.0% |
| !!! | TGTAAATTTTGTTAAGATTA+TGG | + | chr6_3:45784526-45784545 | Msa0952210:intron | 15.0% |
| !!! | ATTCTTAACTTGTTTTTTGA+GGG | - | chr6_3:45783458-45783477 | None:intergenic | 20.0% |
| !! | CAAAATTTACACTAAATTTC+AGG | - | chr6_3:45784517-45784536 | None:intergenic | 20.0% |
| !! | TGTAATTATGTTAAAACTAC+CGG | + | chr6_3:45784720-45784739 | Msa0952210:intron | 20.0% |
| !!! | AGTTTTTCAATAACATAACA+AGG | - | chr6_3:45785168-45785187 | None:intergenic | 20.0% |
| !!! | TGTGAAATTATACGATTTTT+TGG | + | chr6_3:45785356-45785375 | Msa0952210:intron | 20.0% |
| !!! | TTTCTCAAAGAATTTGAAAT+TGG | + | chr6_3:45786282-45786301 | Msa0952210:CDS | 20.0% |
| !!! | TTCTCAAAGAATTTGAAATT+GGG | + | chr6_3:45786283-45786302 | Msa0952210:CDS | 20.0% |
| !! | TATAGATTGGAATGTTAATA+TGG | + | chr6_3:45787155-45787174 | Msa0952210:three_prime_UTR | 20.0% |
| !!! | GATTCTTAACTTGTTTTTTG+AGG | - | chr6_3:45783459-45783478 | None:intergenic | 25.0% |
| ! | TGATAATCAAACTAAGAAGT+TGG | - | chr6_3:45783709-45783728 | None:intergenic | 25.0% |
| !!! | AGCATGAATTTTGATTATGA+AGG | + | chr6_3:45784184-45784203 | Msa0952210:intron | 25.0% |
| ! | TATTTGACTAACTGTGTATT+TGG | + | chr6_3:45784244-45784263 | Msa0952210:intron | 25.0% |
| ! | GTCAATCTTCAAAAACAAAA+GGG | - | chr6_3:45784442-45784461 | None:intergenic | 25.0% |
| ! | AGTCAATCTTCAAAAACAAA+AGG | - | chr6_3:45784443-45784462 | None:intergenic | 25.0% |
| ! | ACTAAATTTCAGGAAAATCA+CGG | - | chr6_3:45784507-45784526 | None:intergenic | 25.0% |
| ! | ATACATTCAATCATAAGTGT+TGG | - | chr6_3:45784569-45784588 | None:intergenic | 25.0% |
| ! | ATTATTATCAATGTACATGC+CGG | + | chr6_3:45784657-45784676 | Msa0952210:intron | 25.0% |
| ! | CAATTTCAAATGAACAATAC+CGG | - | chr6_3:45784764-45784783 | None:intergenic | 25.0% |
| ! | CTAAACTTTGCTAAAACTAT+TGG | + | chr6_3:45785129-45785148 | Msa0952210:intron | 25.0% |
| !!! | TTTTACTTTTGCAACTCATT+AGG | + | chr6_3:45785189-45785208 | Msa0952210:intron | 25.0% |
| !!! | TTTACTTTTGCAACTCATTA+GGG | + | chr6_3:45785190-45785209 | Msa0952210:intron | 25.0% |
| ! | TGTAACTCAGAGATTAAATT+AGG | + | chr6_3:45785478-45785497 | Msa0952210:intron | 25.0% |
| ! | GTAACTCAGAGATTAAATTA+GGG | + | chr6_3:45785479-45785498 | Msa0952210:intron | 25.0% |
| !! | TGATTCATTTTATGAACAGT+TGG | + | chr6_3:45785577-45785596 | Msa0952210:intron | 25.0% |
| !! | CTTAATCTTCTTTTTCTTCT+TGG | - | chr6_3:45785786-45785805 | None:intergenic | 25.0% |
| ! | CAAGAAGAAAAAGAAGATTA+AGG | + | chr6_3:45785784-45785803 | Msa0952210:CDS | 25.0% |
| ! | CTAGTATCAAACAAATCAAA+GGG | - | chr6_3:45786007-45786026 | None:intergenic | 25.0% |
| ! | TCTAGTATCAAACAAATCAA+AGG | - | chr6_3:45786008-45786027 | None:intergenic | 25.0% |
| !!! | CACTGATTTGTCATTTTTAT+CGG | - | chr6_3:45786923-45786942 | None:intergenic | 25.0% |
| ! | TAAAAATGACAAATCAGTGA+AGG | + | chr6_3:45786924-45786943 | Msa0952210:CDS | 25.0% |
| ! | TTGACTAAAAGCTTATAGAT+TGG | + | chr6_3:45787142-45787161 | Msa0952210:exon | 25.0% |
| !!! | ACTTTTTGTCTTGATAGTTA+TGG | + | chr6_3:45787200-45787219 | Msa0952210:three_prime_UTR | 25.0% |
| !!! | CTTTTTGTCTTGATAGTTAT+GGG | + | chr6_3:45787201-45787220 | Msa0952210:three_prime_UTR | 25.0% |
| !!! | TTAACTTGTTTTTTGAGGGA+TGG | - | chr6_3:45783454-45783473 | None:intergenic | 30.0% |
| !!! | ATTTGGATGTGGTTTTTTGA+AGG | + | chr6_3:45784261-45784280 | Msa0952210:intron | 30.0% |
| CTAAATTTCAGGAAAATCAC+GGG | - | chr6_3:45784506-45784525 | None:intergenic | 30.0% | |
| CTTATGATTGAATGTATGTC+TGG | + | chr6_3:45784572-45784591 | Msa0952210:intron | 30.0% | |
| GTACGTATGTGTAAATTAAC+CGG | - | chr6_3:45784742-45784761 | None:intergenic | 30.0% | |
| GTTAATTTACACATACGTAC+CGG | + | chr6_3:45784742-45784761 | Msa0952210:intron | 30.0% | |
| !! | AATCTCTGAAAGTTCTGTTT+TGG | + | chr6_3:45784799-45784818 | Msa0952210:intron | 30.0% |
| !! | ATCTCTGAAAGTTCTGTTTT+GGG | + | chr6_3:45784800-45784819 | Msa0952210:intron | 30.0% |
| !!! | TTGGGTCTTTGTTTTAGATT+TGG | + | chr6_3:45784818-45784837 | Msa0952210:intron | 30.0% |
| !! | TTTAGATTTGGTGAACAACT+TGG | + | chr6_3:45784830-45784849 | Msa0952210:intron | 30.0% |
| !! | TTAGATTTGGTGAACAACTT+GGG | + | chr6_3:45784831-45784850 | Msa0952210:intron | 30.0% |
| ! | GCTCTATGATTTTTGTAACT+TGG | + | chr6_3:45785394-45785413 | Msa0952210:intron | 30.0% |
| TTATGAACAGTTGGAATACT+TGG | + | chr6_3:45785586-45785605 | Msa0952210:intron | 30.0% | |
| TTAGCTATCCAATTTACCTT+TGG | + | chr6_3:45785654-45785673 | Msa0952210:CDS | 30.0% | |
| GAAGAAAAAGAAGATTAAGG+AGG | + | chr6_3:45785787-45785806 | Msa0952210:CDS | 30.0% | |
| ACAATATCAAGCTCTATGTT+AGG | + | chr6_3:45786038-45786057 | Msa0952210:CDS | 30.0% | |
| AAGGACATTTACTACATTAC+TGG | + | chr6_3:45786427-45786446 | Msa0952210:CDS | 30.0% | |
| !!! | TTTGTCATTTTTATCGGCTT+CGG | - | chr6_3:45786917-45786936 | None:intergenic | 30.0% |
| ATTCATAGGATGTTGAAGTT+GGG | + | chr6_3:45787027-45787046 | Msa0952210:CDS | 30.0% | |
| !!! | TGATACGGTGTCGTTTTAAA+AGG | - | chr6_3:45783424-45783443 | None:intergenic | 35.0% |
| ! | TTTATAGTGTGGAGTGTTTC+TGG | - | chr6_3:45783501-45783520 | None:intergenic | 35.0% |
| !! | AGAGAGAGAGTTTTATAGTG+TGG | - | chr6_3:45783512-45783531 | None:intergenic | 35.0% |
| CAACACTTTCTATAGCAACA+AGG | + | chr6_3:45783727-45783746 | Msa0952210:CDS | 35.0% | |
| ACTAACTGTGTATTTGGATG+TGG | + | chr6_3:45784250-45784269 | Msa0952210:intron | 35.0% | |
| !!! | ATGTGGTTTTTTGAAGGCTT+TGG | + | chr6_3:45784267-45784286 | Msa0952210:intron | 35.0% |
| !! | TGAAGGCTTTGGACAAAATT+CGG | + | chr6_3:45784278-45784297 | Msa0952210:intron | 35.0% |
| ACTGATAAGAGTAAGCTTGA+TGG | + | chr6_3:45784313-45784332 | Msa0952210:CDS | 35.0% | |
| ! | GACAACCAGAGCTTTTTATT+AGG | + | chr6_3:45784335-45784354 | Msa0952210:CDS | 35.0% |
| ACAAGCCTAATAAAAAGCTC+TGG | - | chr6_3:45784343-45784362 | None:intergenic | 35.0% | |
| !! | AATGATGGAAAGAGTGTTGT+TGG | - | chr6_3:45784377-45784396 | None:intergenic | 35.0% |
| ATTACAATGTTCAACCTAGC+CGG | - | chr6_3:45784679-45784698 | None:intergenic | 35.0% | |
| !! | ATGATTGGTCAATTTGGTGT+TGG | + | chr6_3:45784918-45784937 | Msa0952210:CDS | 35.0% |
| ! | ATGATGATGAGCAATACGTT+TGG | + | chr6_3:45784994-45785013 | Msa0952210:CDS | 35.0% |
| ! | TGATGATGAGCAATACGTTT+GGG | + | chr6_3:45784995-45785014 | Msa0952210:CDS | 35.0% |
| ACTGTTACAAGAGATACTGA+AGG | + | chr6_3:45785041-45785060 | Msa0952210:CDS | 35.0% | |
| TTTGAGGAAAAGAGTGATCT+TGG | - | chr6_3:45785087-45785106 | None:intergenic | 35.0% | |
| ATGTTATGCCTTAGTTTCGT+TGG | + | chr6_3:45785233-45785252 | Msa0952210:intron | 35.0% | |
| TTATCACACCAACGAAACTA+AGG | - | chr6_3:45785244-45785263 | None:intergenic | 35.0% | |
| ! | GAACATGAGTGAGAATTTTC+TGG | + | chr6_3:45785431-45785450 | Msa0952210:intron | 35.0% |
| ! | TCTTTTCGGAACAAAGAGAA+TGG | - | chr6_3:45785981-45786000 | None:intergenic | 35.0% |
| !!! | AAATCAAAGGGTGCTCTTTT+CGG | - | chr6_3:45785995-45786014 | None:intergenic | 35.0% |
| ATATCAAGCTCTATGTTAGG+AGG | + | chr6_3:45786041-45786060 | Msa0952210:CDS | 35.0% | |
| TATCAAGCTCTATGTTAGGA+GGG | + | chr6_3:45786042-45786061 | Msa0952210:CDS | 35.0% | |
| ! | TTCACAAATCCAAGGTATTC+AGG | - | chr6_3:45786100-45786119 | None:intergenic | 35.0% |
| GAATACCTTGGATTTGTGAA+AGG | + | chr6_3:45786100-45786119 | Msa0952210:CDS | 35.0% | |
| ACAAGATCTTGAAGGTGATT+AGG | + | chr6_3:45786179-45786198 | Msa0952210:CDS | 35.0% | |
| !! | CTAAACTTGCTGATTTGCTT+AGG | + | chr6_3:45786332-45786351 | Msa0952210:CDS | 35.0% |
| !! | TGATGAAATGACTAGCTTGA+AGG | + | chr6_3:45786375-45786394 | Msa0952210:CDS | 35.0% |
| TATGTCACCAGAATGAAAGA+AGG | + | chr6_3:45786400-45786419 | Msa0952210:CDS | 35.0% | |
| ATGTCACCAGAATGAAAGAA+GGG | + | chr6_3:45786401-45786420 | Msa0952210:CDS | 35.0% | |
| CATTACTGGAGAAAGCAAAA+AGG | + | chr6_3:45786441-45786460 | Msa0952210:CDS | 35.0% | |
| ! | GAAATTGGTTTCAGCAACAA+AGG | + | chr6_3:45786579-45786598 | Msa0952210:CDS | 35.0% |
| TAACATGGAGAGAATCATGA+AGG | + | chr6_3:45786789-45786808 | Msa0952210:CDS | 35.0% | |
| ATGGAAATCAACCCTGATAA+TGG | + | chr6_3:45786865-45786884 | Msa0952210:CDS | 35.0% | |
| CTTCCATAATGCCATTATCA+GGG | - | chr6_3:45786879-45786898 | None:intergenic | 35.0% | |
| TCTTCCATAATGCCATTATC+AGG | - | chr6_3:45786880-45786899 | None:intergenic | 35.0% | |
| ! | TTTCAAAAAGCAGAAGCACA+AGG | - | chr6_3:45786951-45786970 | None:intergenic | 35.0% |
| GATTCATAGGATGTTGAAGT+TGG | + | chr6_3:45787026-45787045 | Msa0952210:CDS | 35.0% | |
| ! | TCTTGATAGTTATGGGTGTT+GGG | + | chr6_3:45787208-45787227 | Msa0952210:three_prime_UTR | 35.0% |
| ACCATACTAACAGAACGTTC+TGG | + | chr6_3:45783396-45783415 | Msa0952210:five_prime_UTR | 40.0% | |
| TCCAGAACGTTCTGTTAGTA+TGG | - | chr6_3:45783400-45783419 | None:intergenic | 40.0% | |
| TCTCGATCGAGTTTCTTCAA+TGG | + | chr6_3:45783646-45783665 | Msa0952210:exon | 40.0% | |
| TTGGTTAATCTCAGCTTGGA+AGG | - | chr6_3:45783690-45783709 | None:intergenic | 40.0% | |
| ! | GAAGTTGGTTAATCTCAGCT+TGG | - | chr6_3:45783694-45783713 | None:intergenic | 40.0% |
| ACTCTTTCCATCATTGACAG+TGG | + | chr6_3:45784382-45784401 | Msa0952210:CDS | 40.0% | |
| AGTTGTGAGATTACCTGCTT+TGG | - | chr6_3:45784419-45784438 | None:intergenic | 40.0% | |
| ! | GTGAGCATGATTGGTCAATT+TGG | + | chr6_3:45784912-45784931 | Msa0952210:CDS | 40.0% |
| TGGATTCTACTCTGCTTATC+TGG | + | chr6_3:45784938-45784957 | Msa0952210:CDS | 40.0% | |
| TTGCTCATCATCATTGTGCT+TGG | - | chr6_3:45784988-45785007 | None:intergenic | 40.0% | |
| GATACTGAAGGTGAACAACT+TGG | + | chr6_3:45785053-45785072 | Msa0952210:CDS | 40.0% | |
| TGAAGGTGAACAACTTGGTA+GGG | + | chr6_3:45785058-45785077 | Msa0952210:CDS | 40.0% | |
| ! | GATCACTCTTTTCCTCAAAG+AGG | + | chr6_3:45785088-45785107 | Msa0952210:CDS | 40.0% |
| ! | TCTTTTCCTCAAAGAGGATC+AGG | + | chr6_3:45785094-45785113 | Msa0952210:CDS | 40.0% |
| ! | AAAGTACCTGATCCTCTTTG+AGG | - | chr6_3:45785103-45785122 | None:intergenic | 40.0% |
| AGTTGGAATACTTGGAAGAG+AGG | + | chr6_3:45785594-45785613 | Msa0952210:intron | 40.0% | |
| CTTGGAAGAGAGGAGAATTA+AGG | + | chr6_3:45785604-45785623 | Msa0952210:CDS | 40.0% | |
| TTCTCGGTCCAAAGGTAAAT+TGG | - | chr6_3:45785665-45785684 | None:intergenic | 40.0% | |
| CTCTTTCTCAGTAGTCTTCT+CGG | - | chr6_3:45785681-45785700 | None:intergenic | 40.0% | |
| ACACCTTCTTCTTCCTTCTT+GGG | - | chr6_3:45785728-45785747 | None:intergenic | 40.0% | |
| TTAAGGAGGTTTCTCATGAG+TGG | + | chr6_3:45785801-45785820 | Msa0952210:CDS | 40.0% | |
| TAAGGAGGTTTCTCATGAGT+GGG | + | chr6_3:45785802-45785821 | Msa0952210:CDS | 40.0% | |
| TCAACAAGCAGAAACCAATC+TGG | + | chr6_3:45785831-45785850 | Msa0952210:CDS | 40.0% | |
| GAAAGCAGCATATTCATCCT+TGG | - | chr6_3:45785879-45785898 | None:intergenic | 40.0% | |
| CAAATGTTCTTCCCAGTCAT+TGG | - | chr6_3:45785915-45785934 | None:intergenic | 40.0% | |
| CAATGACTGGGAAGAACATT+TGG | + | chr6_3:45785913-45785932 | Msa0952210:CDS | 40.0% | |
| ! | TGTGAAGCATTTCTCTGTTG+AGG | + | chr6_3:45785937-45785956 | Msa0952210:CDS | 40.0% |
| ! | GTGAAGCATTTCTCTGTTGA+GGG | + | chr6_3:45785938-45785957 | Msa0952210:CDS | 40.0% |
| ! | TGAAGCATTTCTCTGTTGAG+GGG | + | chr6_3:45785939-45785958 | Msa0952210:CDS | 40.0% |
| CAACACCTTTCACAAATCCA+AGG | - | chr6_3:45786108-45786127 | None:intergenic | 40.0% | |
| ATCTCACGAGAGATGTTAAG+CGG | - | chr6_3:45786148-45786167 | None:intergenic | 40.0% | |
| GCAACAGAACAAGATCTTGA+AGG | + | chr6_3:45786171-45786190 | Msa0952210:CDS | 40.0% | |
| CAATGAGATTGCTGAGAACA+AGG | + | chr6_3:45786234-45786253 | Msa0952210:CDS | 40.0% | |
| TTCATGAAGATAGCCAGAAC+AGG | + | chr6_3:45786308-45786327 | Msa0952210:CDS | 40.0% | |
| TCATGAAGATAGCCAGAACA+GGG | + | chr6_3:45786309-45786328 | Msa0952210:CDS | 40.0% | |
| AGTCATTTCATCACCACTCT+TGG | - | chr6_3:45786368-45786387 | None:intergenic | 40.0% | |
| TGTGGAAAACTCTCCATTCT+TGG | + | chr6_3:45786465-45786484 | Msa0952210:CDS | 40.0% | |
| TTCTTCAGTCTCTCCAAGAA+TGG | - | chr6_3:45786481-45786500 | None:intergenic | 40.0% | |
| TTGGTTTCAGCAACAAAGGA+AGG | + | chr6_3:45786583-45786602 | Msa0952210:CDS | 40.0% | |
| GGAGGAGAAGAAGAAAAAAG+AGG | + | chr6_3:45786630-45786649 | Msa0952210:CDS | 40.0% | |
| GGAGAAGAAGAAATCCTTTG+AGG | + | chr6_3:45786651-45786670 | Msa0952210:CDS | 40.0% | |
| AGGGTCATGAAGGAAATCTT+GGG | + | chr6_3:45786682-45786701 | Msa0952210:CDS | 40.0% | |
| GGAAATCTTGGGAGATAAAG+TGG | + | chr6_3:45786693-45786712 | Msa0952210:CDS | 40.0% | |
| !! | TGTTGATTCTCCATGCTGTT+TGG | + | chr6_3:45786741-45786760 | Msa0952210:CDS | 40.0% |
| CATGTCGAGCAAGAAAACTA+TGG | + | chr6_3:45786846-45786865 | Msa0952210:CDS | 40.0% | |
| !! | CAACCCTGATAATGGCATTA+TGG | + | chr6_3:45786873-45786892 | Msa0952210:CDS | 40.0% |
| ATGGCATTATGGAAGAGTTG+AGG | + | chr6_3:45786884-45786903 | Msa0952210:CDS | 40.0% | |
| TTATGGAAGAGTTGAGGAAG+AGG | + | chr6_3:45786890-45786909 | Msa0952210:CDS | 40.0% | |
| !!! | GAAACTGCTCTTTTGACTTC+TGG | + | chr6_3:45786967-45786986 | Msa0952210:CDS | 40.0% |
| !! | CAAAGGTGTTTGGTTCATCA+AGG | - | chr6_3:45786999-45787018 | None:intergenic | 40.0% |
| !! | AGCATTGATGAGGATGAAAC+TGG | + | chr6_3:45787054-45787073 | Msa0952210:CDS | 40.0% |
| TGATGTTGATATGCCTCCAT+TGG | + | chr6_3:45787083-45787102 | Msa0952210:CDS | 40.0% | |
| ! | GTCTTGATAGTTATGGGTGT+TGG | + | chr6_3:45787207-45787226 | Msa0952210:three_prime_UTR | 40.0% |
| !!! | AGTTATGGGTGTTGGGTTTT+TGG | + | chr6_3:45787215-45787234 | Msa0952210:three_prime_UTR | 40.0% |
| AGGGATGGTGTGAAGTGATA+CGG | - | chr6_3:45783439-45783458 | None:intergenic | 45.0% | |
| CGATCGAGTTTCTTCAATGG+CGG | + | chr6_3:45783649-45783668 | Msa0952210:exon | 45.0% | |
| !! | AGAGTGTTGTTGGCTTTGTC+AGG | - | chr6_3:45784367-45784386 | None:intergenic | 45.0% |
| TCCATCATTGACAGTGGCAT+TGG | + | chr6_3:45784388-45784407 | Msa0952210:CDS | 45.0% | |
| TCCAATGCCACTGTCAATGA+TGG | - | chr6_3:45784392-45784411 | None:intergenic | 45.0% | |
| TGGTGTCCAACACTGAACAA+TGG | + | chr6_3:45784592-45784611 | Msa0952210:intron | 45.0% | |
| TGTCCAACACTGAACAATGG+TGG | + | chr6_3:45784595-45784614 | Msa0952210:intron | 45.0% | |
| TCACCACCATTGTTCAGTGT+TGG | - | chr6_3:45784601-45784620 | None:intergenic | 45.0% | |
| ! | TATCAATGTACATGCCGGCT+AGG | + | chr6_3:45784662-45784681 | Msa0952210:intron | 45.0% |
| ACAACTTGGGTACTATTGCG+AGG | + | chr6_3:45784844-45784863 | Msa0952210:CDS | 45.0% | |
| CTCATCATCATTGTGCTTGG+TGG | - | chr6_3:45784985-45785004 | None:intergenic | 45.0% | |
| TACGTTTGGGAATCACAAGC+TGG | + | chr6_3:45785008-45785027 | Msa0952210:CDS | 45.0% | |
| CTGAAGGTGAACAACTTGGT+AGG | + | chr6_3:45785057-45785076 | Msa0952210:CDS | 45.0% | |
| GAAGGTGAACAACTTGGTAG+GGG | + | chr6_3:45785059-45785078 | Msa0952210:CDS | 45.0% | |
| TGAAGATGATGAGCCCAAGA+AGG | + | chr6_3:45785712-45785731 | Msa0952210:CDS | 45.0% | |
| CACACCTTCTTCTTCCTTCT+TGG | - | chr6_3:45785729-45785748 | None:intergenic | 45.0% | |
| CAAGAAGGAAGAAGAAGGTG+TGG | + | chr6_3:45785727-45785746 | Msa0952210:CDS | 45.0% | |
| TAAGCCAGAAGAGATCACCA+AGG | + | chr6_3:45785859-45785878 | Msa0952210:CDS | 45.0% | |
| ! | TCATCCTTGGTGATCTCTTC+TGG | - | chr6_3:45785866-45785885 | None:intergenic | 45.0% |
| ACAAGAGCCTAACCAATGAC+TGG | + | chr6_3:45785900-45785919 | Msa0952210:CDS | 45.0% | |
| CAAGAGCCTAACCAATGACT+GGG | + | chr6_3:45785901-45785920 | Msa0952210:CDS | 45.0% | |
| ! | GTTCTTCCCAGTCATTGGTT+AGG | - | chr6_3:45785910-45785929 | None:intergenic | 45.0% |
| TGAGGGGCAGCTTGAATTTA+AGG | + | chr6_3:45785955-45785974 | Msa0952210:CDS | 45.0% | |
| !! | TGTTAGGAGGGTGTTCATCA+TGG | + | chr6_3:45786054-45786073 | Msa0952210:CDS | 45.0% |
| GAGCTCATACCTGAATACCT+TGG | + | chr6_3:45786088-45786107 | Msa0952210:CDS | 45.0% | |
| AGGTACCATTCTACCAAGAG+TGG | + | chr6_3:45786352-45786371 | Msa0952210:CDS | 45.0% | |
| CATCACCACTCTTGGTAGAA+TGG | - | chr6_3:45786360-45786379 | None:intergenic | 45.0% | |
| CTTCTGCCCTTCTTTCATTC+TGG | - | chr6_3:45786410-45786429 | None:intergenic | 45.0% | |
| CAGAATGAAAGAAGGGCAGA+AGG | + | chr6_3:45786408-45786427 | Msa0952210:CDS | 45.0% | |
| TGGAGAAAGCAAAAAGGCTG+TGG | + | chr6_3:45786447-45786466 | Msa0952210:CDS | 45.0% | |
| TCTTGGAGAGACTGAAGAAG+AGG | + | chr6_3:45786482-45786501 | Msa0952210:CDS | 45.0% | |
| CTTGGAGAGACTGAAGAAGA+GGG | + | chr6_3:45786483-45786502 | Msa0952210:CDS | 45.0% | |
| TTGGAGAGACTGAAGAAGAG+GGG | + | chr6_3:45786484-45786503 | Msa0952210:CDS | 45.0% | |
| GGGCTATGAAGTTCTCTTCA+TGG | + | chr6_3:45786504-45786523 | Msa0952210:CDS | 45.0% | |
| GCTATCGATGAGTATGCTGT+TGG | + | chr6_3:45786532-45786551 | Msa0952210:CDS | 45.0% | |
| ! | GGACAACTGAAAGAGTACGA+CGG | + | chr6_3:45786553-45786572 | Msa0952210:CDS | 45.0% |
| ! | GACAACTGAAAGAGTACGAC+GGG | + | chr6_3:45786554-45786573 | Msa0952210:CDS | 45.0% |
| AGAGTACGACGGGAAGAAAT+TGG | + | chr6_3:45786564-45786583 | Msa0952210:CDS | 45.0% | |
| AACAAAGGAAGGACTGAAGC+TGG | + | chr6_3:45786594-45786613 | Msa0952210:CDS | 45.0% | |
| GAAGCTGGATGATGAAACTG+AGG | + | chr6_3:45786609-45786628 | Msa0952210:CDS | 45.0% | |
| ! | AATCCTTTGAGGATCTCTGC+AGG | + | chr6_3:45786662-45786681 | Msa0952210:CDS | 45.0% |
| ! | ATCCTTTGAGGATCTCTGCA+GGG | + | chr6_3:45786663-45786682 | Msa0952210:CDS | 45.0% |
| CAGGGTCATGAAGGAAATCT+TGG | + | chr6_3:45786681-45786700 | Msa0952210:CDS | 45.0% | |
| CTTGGGAGATAAAGTGGAGA+AGG | + | chr6_3:45786699-45786718 | Msa0952210:CDS | 45.0% | |
| !! | ATACGGATGGACTGCTAACA+TGG | + | chr6_3:45786774-45786793 | Msa0952210:CDS | 45.0% |
| GATGAACCAAACACCTTTGC+TGG | + | chr6_3:45787000-45787019 | Msa0952210:CDS | 45.0% | |
| AACCAAACACCTTTGCTGGA+AGG | + | chr6_3:45787004-45787023 | Msa0952210:CDS | 45.0% | |
| !! | ATCCTTCCAGCAAAGGTGTT+TGG | - | chr6_3:45787009-45787028 | None:intergenic | 45.0% |
| CCTATGAATCCTTCCAGCAA+AGG | - | chr6_3:45787016-45787035 | None:intergenic | 45.0% | |
| CCTTTGCTGGAAGGATTCAT+AGG | + | chr6_3:45787013-45787032 | Msa0952210:CDS | 45.0% | |
| !! | GTTGGGTCTTAGCATTGATG+AGG | + | chr6_3:45787044-45787063 | Msa0952210:CDS | 45.0% |
| ATGCCTCCATTGGAAGAAGA+TGG | + | chr6_3:45787093-45787112 | Msa0952210:CDS | 45.0% | |
| TCAGCACCATCTTCTTCCAA+TGG | - | chr6_3:45787102-45787121 | None:intergenic | 45.0% | |
| ! | ATTGGAAGAAGATGGTGCTG+AGG | + | chr6_3:45787101-45787120 | Msa0952210:CDS | 45.0% |
| ! | GGCATTGGAATGACCAAAGC+AGG | + | chr6_3:45784403-45784422 | Msa0952210:CDS | 50.0% |
| TTGGGTACTATTGCGAGGTC+TGG | + | chr6_3:45784849-45784868 | Msa0952210:CDS | 50.0% | |
| ! | TATTGCGAGGTCTGGAACCA+AGG | + | chr6_3:45784857-45784876 | Msa0952210:CDS | 50.0% |
| ! | GTCTGGAACCAAGGAGTTCA+TGG | + | chr6_3:45784866-45784885 | Msa0952210:CDS | 50.0% |
| TGGAACCAAGGAGTTCATGG+AGG | + | chr6_3:45784869-45784888 | Msa0952210:CDS | 50.0% | |
| CAATGCCTCCATGAACTCCT+TGG | - | chr6_3:45784877-45784896 | None:intergenic | 50.0% | |
| GGTGCAGATGTGAGCATGAT+TGG | + | chr6_3:45784903-45784922 | Msa0952210:CDS | 50.0% | |
| GTTTGGGAATCACAAGCTGG+TGG | + | chr6_3:45785011-45785030 | Msa0952210:CDS | 50.0% | |
| CAGTAGTCTTCTCGGTCCAA+AGG | - | chr6_3:45785673-45785692 | None:intergenic | 50.0% | |
| GAGCCCAAGAAGGAAGAAGA+AGG | + | chr6_3:45785722-45785741 | Msa0952210:CDS | 50.0% | |
| !! | TGTGGTCGAGGAAGTTGATG+AGG | + | chr6_3:45785745-45785764 | Msa0952210:CDS | 50.0% |
| !! | CGAGGAAGTTGATGAGGACA+AGG | + | chr6_3:45785751-45785770 | Msa0952210:CDS | 50.0% |
| ! | TCTGGCTTACGTAGCCAGAT+TGG | - | chr6_3:45785848-45785867 | None:intergenic | 50.0% |
| GTTCATCATGGACAACTGCG+AGG | + | chr6_3:45786066-45786085 | Msa0952210:CDS | 50.0% | |
| CAGCAAGTTTAGCCCTGTTC+TGG | - | chr6_3:45786324-45786343 | None:intergenic | 50.0% | |
| GCTGGATGATGAAACTGAGG+AGG | + | chr6_3:45786612-45786631 | Msa0952210:CDS | 50.0% | |
| GGGAGATAAAGTGGAGAAGG+TGG | + | chr6_3:45786702-45786721 | Msa0952210:CDS | 50.0% | |
| AGAAGGTGGTTGTCTCTGAC+AGG | + | chr6_3:45786716-45786735 | Msa0952210:CDS | 50.0% | |
| ! | TCTCCATGCTGTTTGGTGAC+CGG | + | chr6_3:45786748-45786767 | Msa0952210:CDS | 50.0% |
| ! | TGTTTGGTGACCGGCGAATA+CGG | + | chr6_3:45786757-45786776 | Msa0952210:CDS | 50.0% |
| TCATGAAGGCTCAAGCTCTG+AGG | + | chr6_3:45786803-45786822 | Msa0952210:CDS | 50.0% | |
| ! | CATGAAGGCTCAAGCTCTGA+GGG | + | chr6_3:45786804-45786823 | Msa0952210:CDS | 50.0% |
| GCACCATCTTCTTCCAATGG+AGG | - | chr6_3:45787099-45787118 | None:intergenic | 50.0% | |
| !! | GGAGTTCATGGAGGCATTGC+AGG | + | chr6_3:45784878-45784897 | Msa0952210:CDS | 55.0% |
| !! | TTCATGGAGGCATTGCAGGC+TGG | + | chr6_3:45784882-45784901 | Msa0952210:CDS | 55.0% |
| ! | GGAAGAAGAAGGTGTGGTCG+AGG | + | chr6_3:45785733-45785752 | Msa0952210:CDS | 55.0% |
| GACCCTGCAGAGATCCTCAA+AGG | - | chr6_3:45786668-45786687 | None:intergenic | 55.0% | |
| GGATCTCTGCAGGGTCATGA+AGG | + | chr6_3:45786672-45786691 | Msa0952210:CDS | 55.0% | |
| AGCAGTCCATCCGTATTCGC+CGG | - | chr6_3:45786770-45786789 | None:intergenic | 55.0% | |
| ! | TGGTGCTGAGGAGAGCAAGA+TGG | + | chr6_3:45787113-45787132 | Msa0952210:CDS | 55.0% |
| TGCTGAGGAGAGCAAGATGG+AGG | + | chr6_3:45787116-45787135 | Msa0952210:CDS | 55.0% | |
| TCGCCGGTCACCAAACAGCA+TGG | - | chr6_3:45786754-45786773 | None:intergenic | 60.0% | |
| TGGTGACCGGCGAATACGGA+TGG | + | chr6_3:45786761-45786780 | Msa0952210:CDS | 60.0% | |
| !! | AGCTCTGAGGGACAGCAGCA+TGG | + | chr6_3:45786816-45786835 | Msa0952210:CDS | 60.0% |
| CTGAGGGACAGCAGCATGGC+AGG | + | chr6_3:45786820-45786839 | Msa0952210:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 45783393 | 45787350 | 45783393 | ID=Msa0952210;Name=Msa0952210 |
| chr6_3 | mRNA | 45783393 | 45787350 | 45783393 | ID=Msa0952210-mRNA-1;Parent=Msa0952210;Name=Msa0952210-mRNA-1;_AED=0.10;_eAED=0.10;_QI=272|1|1|1|1|1|4|201|699 |
| chr6_3 | exon | 45783393 | 45783787 | 45783393 | ID=Msa0952210-mRNA-1:exon:10222;Parent=Msa0952210-mRNA-1 |
| chr6_3 | exon | 45784283 | 45784424 | 45784283 | ID=Msa0952210-mRNA-1:exon:10223;Parent=Msa0952210-mRNA-1 |
| chr6_3 | exon | 45784835 | 45785115 | 45784835 | ID=Msa0952210-mRNA-1:exon:10224;Parent=Msa0952210-mRNA-1 |
| chr6_3 | exon | 45785596 | 45787350 | 45785596 | ID=Msa0952210-mRNA-1:exon:10225;Parent=Msa0952210-mRNA-1 |
| chr6_3 | five_prime_UTR | 45783393 | 45783664 | 45783393 | ID=Msa0952210-mRNA-1:five_prime_utr;Parent=Msa0952210-mRNA-1 |
| chr6_3 | CDS | 45783665 | 45783787 | 45783665 | ID=Msa0952210-mRNA-1:cds;Parent=Msa0952210-mRNA-1 |
| chr6_3 | CDS | 45784283 | 45784424 | 45784283 | ID=Msa0952210-mRNA-1:cds;Parent=Msa0952210-mRNA-1 |
| chr6_3 | CDS | 45784835 | 45785115 | 45784835 | ID=Msa0952210-mRNA-1:cds;Parent=Msa0952210-mRNA-1 |
| chr6_3 | CDS | 45785596 | 45787149 | 45785596 | ID=Msa0952210-mRNA-1:cds;Parent=Msa0952210-mRNA-1 |
| chr6_3 | three_prime_UTR | 45787150 | 45787350 | 45787150 | ID=Msa0952210-mRNA-1:three_prime_utr;Parent=Msa0952210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
