AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0644240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0644240 MtrunA17_Chr4g0031321 99.384 649 4 0 1 649 1 649 0.0 1325
Msa0644240 MtrunA17_Chr4g0031301 98.921 649 7 0 1 649 1 649 0.0 1318
Msa0644240 MtrunA17_Chr7g0262821 92.296 649 50 0 1 649 1 649 0.0 1234
Msa0644240 MtrunA17_Chr7g0223291 92.473 651 45 3 1 649 1 649 0.0 1231
Msa0644240 MtrunA17_Chr7g0223181 92.166 651 46 2 1 649 1 648 0.0 1223
Msa0644240 MtrunA17_Chr4g0073741 87.156 654 78 3 1 649 1 653 0.0 1152
Msa0644240 MtrunA17_Chr6g0462681 66.992 615 202 1 1 615 1 614 0.0 848
Msa0644240 MtrunA17_Chr7g0223751 66.506 621 203 4 1 619 1 618 0.0 840
Msa0644240 MtrunA17_Chr2g0284681 67.715 604 175 3 9 606 8 597 0.0 833
Msa0644240 MtrunA17_Chr7g0223711 65.217 621 212 3 1 619 1 619 0.0 832
Msa0644240 MtrunA17_Chr6g0462601 65.909 616 209 1 1 616 1 615 0.0 831
Msa0644240 MtrunA17_Chr7g0223741 66.667 597 195 3 1 595 1 595 0.0 817
Msa0644240 MtrunA17_Chr7g0221661 65.366 615 209 3 1 613 1 613 0.0 816
Msa0644240 MtrunA17_Chr2g0298851 65.751 619 205 6 1 615 1 616 0.0 815
Msa0644240 MtrunA17_Chr2g0293581 65.416 613 208 3 6 615 7 618 0.0 809
Msa0644240 MtrunA17_Chr8g0350731 64.640 625 216 4 1 623 29 650 0.0 808
Msa0644240 MtrunA17_Chr5g0427901 64.013 628 211 4 1 615 1 626 0.0 808
Msa0644240 MtrunA17_Chr8g0388761 65.798 614 204 4 7 618 36 645 0.0 806
Msa0644240 MtrunA17_Chr8g0388671 65.798 614 204 4 7 618 36 645 0.0 803
Msa0644240 MtrunA17_Chr7g0223731 65.296 608 206 4 1 606 1 605 0.0 803
Msa0644240 MtrunA17_Chr7g0233311 63.430 618 222 3 1 615 1 617 0.0 799
Msa0644240 MtrunA17_Chr7g0223801 63.371 617 220 5 1 615 1 613 0.0 797
Msa0644240 MtrunA17_Chr7g0223621 64.426 610 212 4 1 608 1 607 0.0 795
Msa0644240 MtrunA17_Chr7g0223031 64.484 611 212 4 1 609 1 608 0.0 795
Msa0644240 MtrunA17_Chr7g0223631 63.929 621 205 6 1 619 1 604 0.0 783
Msa0644240 MtrunA17_Chr7g0223781 63.415 615 219 3 1 613 1 611 0.0 783
Msa0644240 MtrunA17_Chr7g0248131 63.578 626 218 8 1 619 1 623 0.0 782
Msa0644240 MtrunA17_Chr6g0462711 62.205 635 229 4 2 630 3 632 0.0 782
Msa0644240 MtrunA17_Chr4g0040931 63.175 611 220 4 1 608 1 609 0.0 780
Msa0644240 MtrunA17_Chr7g0248151 63.680 625 219 6 1 620 1 622 0.0 780
Msa0644240 MtrunA17_Chr2g0287631 64.887 618 213 3 1 615 1 617 0.0 780
Msa0644240 MtrunA17_Chr7g0223701 63.166 619 214 6 1 608 1 616 0.0 778
Msa0644240 MtrunA17_Chr7g0223721 62.298 618 228 4 1 615 1 616 0.0 778
Msa0644240 MtrunA17_Chr2g0298861 61.746 630 224 6 1 615 1 628 0.0 778
Msa0644240 MtrunA17_Chr6g0462771 61.981 626 232 2 1 621 1 625 0.0 778
Msa0644240 MtrunA17_Chr7g0225671 63.355 614 217 7 6 615 13 622 0.0 775
Msa0644240 MtrunA17_Chr6g0462641 61.022 626 238 2 1 621 1 625 0.0 769
Msa0644240 MtrunA17_Chr7g0223851 62.843 619 223 6 1 615 10 625 0.0 766
Msa0644240 MtrunA17_Chr2g0296391 68.809 529 162 2 1 527 1 528 0.0 752
Msa0644240 MtrunA17_Chr7g0233301 60.548 621 208 6 1 617 1 588 0.0 745
Msa0644240 MtrunA17_Chr7g0223821 62.319 621 222 7 1 613 1 617 0.0 737
Msa0644240 MtrunA17_Chr7g0217971 61.462 602 203 5 1 600 1 575 0.0 733
Msa0644240 MtrunA17_Chr8g0390821 56.781 671 218 10 1 616 1 654 0.0 719
Msa0644240 MtrunA17_Chr6g0462611 64.014 553 196 2 63 615 13 562 0.0 718
Msa0644240 MtrunA17_Chr4g0012541 58.966 619 238 7 1 615 1 607 0.0 714
Msa0644240 MtrunA17_Chr7g0223831 59.574 611 210 8 1 606 1 579 0.0 702
Msa0644240 MtrunA17_Chr7g0223541 61.497 561 214 2 61 621 20 578 0.0 696
Msa0644240 MtrunA17_Chr7g0215261 58.158 619 217 7 1 614 1 582 0.0 695
Msa0644240 MtrunA17_Chr7g0228281 56.311 618 220 7 1 615 62 632 0.0 671
Msa0644240 MtrunA17_Chr7g0223681 62.147 531 198 3 89 619 2 529 0.0 668
Msa0644240 MtrunA17_Chr2g0299921 84.319 389 59 1 4 392 1024 1410 0.0 667
Msa0644240 MtrunA17_Chr2g0299921 83.377 385 61 2 4 387 1408 1790 0.0 633
Msa0644240 MtrunA17_Chr2g0299851 82.946 387 64 1 1 387 1030 1414 0.0 660
Msa0644240 MtrunA17_Chr2g0293601 64.162 519 149 3 1 517 1 484 0.0 655
Msa0644240 MtrunA17_Chr2g0299791 81.186 388 71 1 1 388 1034 1419 0.0 644
Msa0644240 MtrunA17_Chr2g0299821 71.556 450 114 3 1 436 1 450 0.0 632
Msa0644240 MtrunA17_Chr2g0299821 80.000 95 12 1 452 539 390 484 8.00e-40 152
Msa0644240 MtrunA17_Chr2g0331381 58.780 541 157 6 9 547 6 482 0.0 631
Msa0644240 MtrunA17_Chr2g0299881 76.808 401 87 3 6 402 1035 1433 0.0 622
Msa0644240 MtrunA17_Chr2g0299881 75.758 66 12 1 183 248 1414 1475 5.06e-22 101
Msa0644240 MtrunA17_Chr2g0293561 73.529 374 97 1 1 372 1 374 0.0 583
Msa0644240 MtrunA17_Chr1g0166551 50.977 614 183 8 6 615 2 501 0.0 580
Msa0644240 MtrunA17_Chr2g0279901 51.333 600 262 10 10 602 57 633 0.0 576
Msa0644240 MtrunA17_Chr4g0049501 51.000 600 265 10 10 602 54 631 0.0 565
Msa0644240 MtrunA17_Chr6g0462861 50.159 628 277 11 1 615 1 605 0.0 565
Msa0644240 MtrunA17_Chr2g0277021 47.975 642 305 13 10 641 72 694 0.0 536
Msa0644240 MtrunA17_Chr2g0293271 54.920 437 124 4 21 455 43 408 8.24e-162 470
Msa0644240 MtrunA17_Chr1g0151991 70.790 291 83 1 1 289 1 291 4.45e-149 433
Msa0644240 MtrunA17_Chr7g0245521 72.161 273 74 1 1 271 1 273 4.21e-142 414
Msa0644240 MtrunA17_Chr6g0462631 58.735 332 93 3 86 415 8 297 2.92e-122 365
Msa0644240 MtrunA17_Chr7g0223761 49.206 378 148 2 239 615 3 337 8.63e-119 357
Msa0644240 MtrunA17_Chr6g0462751 54.155 349 101 3 65 411 12 303 3.99e-117 352
Msa0644240 MtrunA17_Chr7g0245531 58.280 314 129 2 303 616 2 313 8.38e-117 351
Msa0644240 MtrunA17_Chr1g0152001 55.219 297 128 5 313 608 1 293 1.02e-101 313
Msa0644240 MtrunA17_Chr1g0188601 73.822 191 50 0 90 280 1 191 1.13e-98 300
Msa0644240 MtrunA17_Chr5g0394391 36.382 503 293 10 9 494 29 521 4.42e-97 309
Msa0644240 MtrunA17_Chr7g0223671 69.841 189 57 0 72 260 8 196 3.84e-93 286
Msa0644240 MtrunA17_Chr1g0188611 54.082 294 125 4 323 615 4 288 3.60e-85 268
Msa0644240 MtrunA17_Chr6g0462791 70.455 176 51 1 106 281 1 175 1.65e-82 257
Msa0644240 MtrunA17_Chr2g0331901 32.972 461 291 5 10 457 4 459 5.42e-81 273
Msa0644240 MtrunA17_Chr4g0004331 34.018 438 273 4 10 434 4 438 4.63e-80 271
Msa0644240 MtrunA17_Chr5g0444001 34.192 427 272 4 10 430 4 427 1.52e-77 257
Msa0644240 MtrunA17_Chr3g0098761 33.571 420 274 4 10 428 4 419 1.16e-75 257
Msa0644240 MtrunA17_Chr7g0223771 73.203 153 41 0 92 244 2 154 5.52e-75 237
Msa0644240 MtrunA17_Chr5g0394221 42.638 326 175 5 265 587 35 351 1.25e-70 233
Msa0644240 MtrunA17_Chr4g0046881 73.050 141 35 1 133 273 14 151 9.44e-69 220
Msa0644240 MtrunA17_Chr4g0060241 32.143 504 307 14 10 496 21 506 1.95e-67 230
Msa0644240 MtrunA17_Chr4g0064621 33.789 512 307 11 9 496 140 643 2.95e-67 233
Msa0644240 MtrunA17_Chr6g0462701 62.651 166 38 1 103 268 27 168 1.31e-61 202
Msa0644240 MtrunA17_Chr5g0442171 37.168 339 182 9 168 491 1 323 3.96e-60 204
Msa0644240 MtrunA17_Chr7g0223861 70.992 131 38 0 76 206 4 134 4.07e-58 192
Msa0644240 MtrunA17_Chr6g0462691 67.361 144 47 0 321 464 2 145 2.01e-57 191
Msa0644240 MtrunA17_Chr3g0120101 27.567 526 336 12 10 498 27 544 4.68e-57 207
Msa0644240 MtrunA17_Chr7g0245541 48.756 201 102 1 416 616 1 200 4.36e-54 183
Msa0644240 MtrunA17_Chr5g0394231 39.207 227 87 4 72 297 5 181 1.11e-43 154
Msa0644240 MtrunA17_Chr4g0046871 72.449 98 26 1 337 434 9 105 1.55e-40 143
Msa0644240 MtrunA17_Chr6g0481391 59.836 122 46 1 36 157 13 131 1.22e-39 142
Msa0644240 MtrunA17_Chr6g0462621 76.056 71 17 0 1 71 1 71 3.38e-32 119
Msa0644240 MtrunA17_Chr7g0223691 78.082 73 14 1 1 71 1 73 9.24e-32 117
Msa0644240 MtrunA17_Chr6g0481381 71.622 74 21 0 174 247 1 74 1.42e-30 118
Msa0644240 MtrunA17_Chr6g0481381 38.384 99 60 1 515 612 75 173 1.91e-11 63.5
Msa0644240 MtrunA17_Chr1g0188591 75.342 73 16 1 1 71 1 73 2.85e-30 114
Msa0644240 MtrunA17_Chr2g0284661 71.084 83 24 0 366 448 61 143 3.01e-30 116
Msa0644240 MtrunA17_Chr2g0284661 50.820 61 28 1 223 281 5 65 1.59e-11 62.8
Msa0644240 MtrunA17_Chr7g0223791 64.634 82 21 3 54 135 18 91 2.90e-24 100
Msa0644240 MtrunA17_Chr7g0223791 45.652 92 50 0 482 573 90 181 2.29e-18 83.6
Msa0644240 MtrunA17_Chr7g0223881 60.000 75 29 1 286 360 9 82 3.16e-24 97.1
Msa0644240 MtrunA17_Chr2g0299941 76.667 60 14 0 398 457 23 82 1.54e-23 95.1
Msa0644240 MtrunA17_Chr7g0221651 53.571 84 39 0 213 296 1 84 3.42e-23 94.0
Msa0644240 MtrunA17_Chr4g0064651 46.739 92 49 0 396 487 29 120 1.68e-22 93.2
Msa0644240 MtrunA17_Chr2g0299891 88.372 43 5 0 313 355 1 43 2.16e-19 82.8
Msa0644240 MtrunA17_Chr7g0223871 39.683 126 75 1 491 615 7 132 2.76e-19 84.7
Msa0644240 MtrunA17_Chr6g0462801 62.500 64 19 1 321 379 2 65 1.99e-16 74.3
Msa0644240 MtrunA17_Chr5g0442161 31.126 151 99 3 9 155 28 177 2.60e-15 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0644240 AT3G12580.1 92.166 651 48 2 1 649 1 650 0.0 1216
Msa0644240 AT5G02500.1 90.505 653 56 2 1 649 1 651 0.0 1207
Msa0644240 AT3G09440.1 90.937 651 55 2 1 649 1 649 0.0 1205
Msa0644240 AT3G09440.4 90.937 651 55 2 1 649 1 649 0.0 1205
Msa0644240 AT3G09440.2 90.937 651 55 2 1 649 1 649 0.0 1205
Msa0644240 AT3G09440.3 90.937 651 55 2 1 649 1 649 0.0 1205
Msa0644240 AT5G02490.1 88.838 654 67 2 1 649 1 653 0.0 1188
Msa0644240 AT1G16030.1 84.129 649 100 2 1 649 1 646 0.0 1128
Msa0644240 AT1G56410.1 87.076 619 78 1 1 619 1 617 0.0 1116
Msa0644240 AT5G42020.1 65.056 621 211 4 7 625 35 651 0.0 828
Msa0644240 AT5G42020.3 65.056 621 211 4 7 625 40 656 0.0 827
Msa0644240 AT5G28540.1 65.635 614 205 4 7 618 35 644 0.0 827
Msa0644240 AT1G09080.2 62.969 613 222 3 7 618 40 648 0.0 783
Msa0644240 AT1G09080.1 62.969 613 222 3 7 618 50 658 0.0 783
Msa0644240 AT5G02500.2 92.640 394 29 0 1 394 1 394 0.0 767
Msa0644240 AT5G02500.2 76.087 138 27 2 516 649 386 521 7.69e-54 193
Msa0644240 AT5G42020.2 62.366 558 185 8 7 550 35 581 0.0 671
Msa0644240 AT5G42020.2 51.724 87 41 1 540 625 510 596 1.45e-21 99.8
Msa0644240 AT5G09590.1 52.196 592 257 9 10 594 60 632 0.0 564
Msa0644240 AT4G24280.1 49.418 601 280 10 10 605 81 662 0.0 541
Msa0644240 AT5G49910.1 48.475 623 294 11 10 624 81 684 0.0 537
Msa0644240 AT4G37910.1 52.422 578 249 9 10 580 55 613 0.0 536
Msa0644240 AT4G37910.2 52.422 578 249 9 10 580 55 613 0.0 536
Msa0644240 AT2G32120.1 34.180 512 309 9 9 508 30 525 1.51e-88 287
Msa0644240 AT2G32120.2 34.180 512 309 9 9 508 30 525 1.51e-88 287
Msa0644240 AT1G79930.1 34.932 438 269 4 10 434 4 438 1.05e-84 283
Msa0644240 AT1G79930.2 34.932 438 269 4 10 434 4 438 1.35e-84 282
Msa0644240 AT1G79920.1 34.932 438 269 4 10 434 4 438 2.11e-83 278
Msa0644240 AT1G79920.3 34.932 438 269 4 10 434 4 438 2.97e-83 277
Msa0644240 AT1G79920.2 34.932 438 269 4 10 434 4 438 2.97e-83 277
Msa0644240 AT1G79920.4 34.932 438 269 4 10 434 4 438 2.97e-83 277
Msa0644240 AT1G11660.4 27.219 676 403 12 10 619 4 656 3.92e-82 275
Msa0644240 AT1G11660.3 27.219 676 403 12 10 619 4 656 3.92e-82 275
Msa0644240 AT1G11660.1 27.219 676 403 12 10 619 4 656 3.92e-82 275
Msa0644240 AT1G11660.2 27.301 641 377 12 45 619 2 619 4.26e-74 253
Msa0644240 AT4G16660.2 25.348 718 424 16 5 615 46 758 5.03e-62 222
Msa0644240 AT4G16660.1 25.627 718 422 17 5 615 22 734 1.13e-60 218

Find 166 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCTTCTCAATTTCCTCTT+TGG 0.183600 4_3:-47900984 None:intergenic
AAGGATGCCGGTGTCATTTC+TGG 0.230319 4_3:+47899921 Msa0644240:CDS
AGCCTGTTGAGAAGTGTTTA+AGG 0.232712 4_3:+47900396 Msa0644240:CDS
TGATACATCCTTGCAATGAT+AGG 0.282685 4_3:-47901265 None:intergenic
TACTCCTCTTTCCCTTGGTT+TGG 0.290944 4_3:+47900640 Msa0644240:CDS
GATTGTGTTCCTCATGTTGT+AGG 0.297657 4_3:-47901089 None:intergenic
TCAGATGCCAAGCGTTTAAT+TGG 0.329823 4_3:+47899645 Msa0644240:intron
TGGCCATTCAAGGTCATTCC+TGG 0.331072 4_3:+47899711 Msa0644240:CDS
ACTGCTGCTGCTATTGCTTA+TGG 0.331381 4_3:+47899975 Msa0644240:CDS
CGAAAACACCTGCTCCTTCT+TGG 0.338820 4_3:-47900717 None:intergenic
GCCTGCGATTGGAATCGATT+TGG 0.340588 4_3:+47898659 Msa0644240:CDS
GCTGGCAGTGGAAGTGGTGC+TGG 0.342439 4_3:+47901337 Msa0644240:CDS
CCTGCGATTGGAATCGATTT+GGG 0.353641 4_3:+47898660 Msa0644240:CDS
TACTGCTGGTGATACACATT+TGG 0.354173 4_3:+47900115 Msa0644240:CDS
CCTGATGAAGCCGTTGCATA+TGG 0.359843 4_3:+47900545 Msa0644240:CDS
TGCAAAAGTTGTTGAACCTT+CGG 0.362052 4_3:-47900482 None:intergenic
AATGATTGTGGTGAACTATA+AGG 0.363219 4_3:+47899749 Msa0644240:CDS
CCTGCTGCTGGCAGTGGAAG+TGG 0.369861 4_3:+47901331 Msa0644240:CDS
GATGGTCCTGCTGCTGGCAG+TGG 0.372941 4_3:+47901325 Msa0644240:CDS
GTAGGAATGGTTGTGTTTCT+CGG 0.374272 4_3:-47900695 None:intergenic
GTTGATGATGTTGTTCTAGT+TGG 0.375499 4_3:+47900443 Msa0644240:CDS
CCAACCTGGTGTGTTGATTC+AGG 0.377108 4_3:+47900754 Msa0644240:CDS
CATATTCATGTGTTGGTGTT+TGG 0.389658 4_3:+47898688 Msa0644240:CDS
TAGGCGAATCAGCGATGTTT+CGG 0.397395 4_3:+47899668 Msa0644240:CDS
TTATAGTTCACCACAATCAT+TGG 0.398480 4_3:-47899747 None:intergenic
TTACCGAAAACAGTGTTAGT+AGG 0.404952 4_3:-47898834 None:intergenic
GATGTTACTCCTCTTTCCCT+TGG 0.405687 4_3:+47900635 Msa0644240:CDS
ACAATCATTGGTTTGTCAGC+AGG 0.411900 4_3:-47899735 None:intergenic
CAAGGTGCTGGTGGTGATGC+TGG 0.412390 4_3:+47901286 Msa0644240:CDS
CATGAAATTGTGGCCATTCA+AGG 0.415218 4_3:+47899701 Msa0644240:CDS
TCCCTTGGTTTGGAGACTGC+AGG 0.421609 4_3:+47900650 Msa0644240:CDS
GAGATTGCAGAGGCTTATCT+TGG 0.422742 4_3:+47899831 Msa0644240:CDS
GTTGGGCAAGTTTGAGTTGT+CGG 0.423204 4_3:+47900817 Msa0644240:CDS
TGAAATTGATTCATTGTTTG+AGG 0.423673 4_3:+47900298 Msa0644240:CDS
GAGGAGGATGGTCCTGCTGC+TGG 0.426806 4_3:+47901319 Msa0644240:CDS
GGAAAGCCTACCCTTGTCAT+TGG 0.428458 4_3:-47900963 None:intergenic
TGAAATCATAGCAAATGATC+AGG 0.428560 4_3:+47898725 Msa0644240:CDS
TCCCTTAAACACTTCTCAAC+AGG 0.433425 4_3:-47900398 None:intergenic
CAAAGAGGAAATTGAGAAGA+TGG 0.433532 4_3:+47900985 Msa0644240:CDS
TTGGGCAAGTTTGAGTTGTC+GGG 0.437869 4_3:+47900818 Msa0644240:CDS
GCCTGTTGAGAAGTGTTTAA+GGG 0.438750 4_3:+47900397 Msa0644240:CDS
CATGTTGAGCTCTTCAAAAC+GGG 0.446462 4_3:-47900351 None:intergenic
CCATATGCAACGGCTTCATC+AGG 0.446831 4_3:-47900545 None:intergenic
CTGCTCCTTCTTGGTAGGAA+TGG 0.452909 4_3:-47900708 None:intergenic
CTGATGAAGCCGTTGCATAT+GGG 0.454888 4_3:+47900546 Msa0644240:CDS
GGGCATACCTCCTGCTCCAA+GGG 0.460951 4_3:+47900838 Msa0644240:CDS
ACTGCTGGTGATACACATTT+GGG 0.462462 4_3:+47900116 Msa0644240:CDS
TTATGTTGCTTTCACTGATA+CGG 0.463481 4_3:+47898767 Msa0644240:CDS
CATGGTTCTTATGAAGATGA+AGG 0.464118 4_3:+47899809 Msa0644240:CDS
AGAAATGACACCGGCATCCT+TGG 0.464569 4_3:-47899919 None:intergenic
AGTGAGATTATGGCTGGAAA+AGG 0.464749 4_3:+47898630 None:intergenic
CCATGTTGAGCTCTTCAAAA+CGG 0.468199 4_3:-47900352 None:intergenic
AGTACAGGATCTGTTGTTGC+TGG 0.469670 4_3:+47900613 Msa0644240:CDS
TCGCCTACCAATTAAACGCT+TGG 0.477726 4_3:-47899652 None:intergenic
CGGGCATACCTCCTGCTCCA+AGG 0.477998 4_3:+47900837 Msa0644240:CDS
GATGATGTTGTTCTAGTTGG+TGG 0.478696 4_3:+47900446 Msa0644240:CDS
GTGTTTAAGGGATGCTAAGA+TGG 0.480423 4_3:+47900409 Msa0644240:CDS
GAAAATTGAAGATGCTATTG+AGG 0.480599 4_3:+47901156 Msa0644240:CDS
ATTGGTTTGTCAGCAGGGCC+AGG 0.481800 4_3:-47899729 None:intergenic
CAATGAATCAATTTCAATGG+TGG 0.482628 4_3:-47900291 None:intergenic
CTCAATCTTCTCAGAGCCCT+CGG 0.484863 4_3:-47900221 None:intergenic
AAATTTAGTGAGATTATGGC+TGG 0.487985 4_3:+47898624 None:intergenic
TTCTAGTTGGTGGATCTACT+AGG 0.492016 4_3:+47900456 Msa0644240:CDS
AAAGGTGAAGGGCCTGCGAT+TGG 0.492641 4_3:+47898648 Msa0644240:CDS
GCAAGATTTCTTCAATGGAA+AGG 0.494283 4_3:+47900502 Msa0644240:CDS
GGGCCAGGAATGACCTTGAA+TGG 0.494864 4_3:-47899714 None:intergenic
TGTTTCACTTCTTACTATTG+AGG 0.495641 4_3:+47900070 Msa0644240:CDS
AAACAATGAATCAATTTCAA+TGG 0.497295 4_3:-47900294 None:intergenic
TGGTGATGCTGGAGGAGCCA+TGG 0.498075 4_3:+47901297 Msa0644240:CDS
ATTCAAGAGGAAGAATAAGA+AGG 0.502948 4_3:+47900184 Msa0644240:CDS
GACTCGTGATAACAATCTGT+TGG 0.504268 4_3:+47900799 Msa0644240:CDS
ACTGATACGGAACGTTTGAT+CGG 0.504694 4_3:+47898780 Msa0644240:CDS
GATACATCCTTGCAATGATA+GGG 0.505117 4_3:-47901264 None:intergenic
GGAAATTGAGAAGATGGTGC+AGG 0.506093 4_3:+47900991 Msa0644240:CDS
CCACTTCCACTGCCAGCAGC+AGG 0.506743 4_3:-47901331 None:intergenic
GAAATTGATTCATTGTTTGA+GGG 0.510562 4_3:+47900299 Msa0644240:CDS
TGCTGAAGAGATATCTTCCA+TGG 0.512232 4_3:+47899791 Msa0644240:CDS
CAATCATTGGTTTGTCAGCA+GGG 0.512365 4_3:-47899734 None:intergenic
TGAGGAACACCCCTTGGAGC+AGG 0.513433 4_3:-47900848 None:intergenic
AGTAGAGGAAAGGGTCCTCT+TGG 0.513969 4_3:-47900261 None:intergenic
TCAGCAGAGGACAAGACTAC+AGG 0.515526 4_3:+47900917 Msa0644240:CDS
TACCGAAAACAGTGTTAGTA+GGG 0.517002 4_3:-47898833 None:intergenic
GGATTTGTTTAGAAAGTGTA+CGG 0.519591 4_3:+47900373 Msa0644240:CDS
GTCTCCAAACCAAGGGAAAG+AGG 0.524557 4_3:-47900644 None:intergenic
ACTCGTGATAACAATCTGTT+GGG 0.525563 4_3:+47900800 Msa0644240:CDS
AAAATTGAAGATGCTATTGA+GGG 0.529908 4_3:+47901157 Msa0644240:CDS
AAAGTACAAGTCTGAGGATG+AGG 0.531693 4_3:+47901021 Msa0644240:CDS
TGAATTTGAAGACAAGATGA+AGG 0.531804 4_3:+47901222 Msa0644240:CDS
TGAAGACAAGATGAAGGAGC+TGG 0.532976 4_3:+47901228 Msa0644240:CDS
CTTGGTTTGGAGACTGCAGG+AGG 0.533555 4_3:+47900653 Msa0644240:CDS
GATAAGAAAGCTACAAGTAC+CGG 0.542379 4_3:+47900002 Msa0644240:CDS
CCCAAATCGATTCCAATCGC+AGG 0.542979 4_3:-47898660 None:intergenic
TCAGTGAAAGCAACATAAGA+AGG 0.544801 4_3:-47898762 None:intergenic
TGAGACATTTAAAATACCAT+TGG 0.546511 4_3:-47900897 None:intergenic
TGTGAATCATTGAAGTAAGC+AGG 0.547923 4_3:-47899885 None:intergenic
AAGAATAAGAAGGATATCAG+TGG 0.551907 4_3:+47900194 Msa0644240:CDS
TGATGAAGCCGTTGCATATG+GGG 0.552611 4_3:+47900547 Msa0644240:CDS
ATGCCAAGCGTTTAATTGGT+AGG 0.552994 4_3:+47899649 Msa0644240:CDS
AATGGTGGTTTGAGCAGTAG+AGG 0.553384 4_3:-47900276 None:intergenic
GGGGCTATTCAATGGTTGGA+TGG 0.553727 4_3:+47901178 Msa0644240:CDS
GGTTTGAGCAGTAGAGGAAA+GGG 0.553832 4_3:-47900270 None:intergenic
CACCACTCAAAATAGCAGCT+TGG 0.555458 4_3:-47900577 None:intergenic
ATCATTGCAAGGATGTATCA+AGG 0.560478 4_3:+47901268 Msa0644240:CDS
AGCAGGACCATCCTCCTCCA+TGG 0.563889 4_3:-47901314 None:intergenic
TTTGAGGTGAAAGCTACTGC+TGG 0.564230 4_3:+47900101 Msa0644240:CDS
TGCTTTGACATTGATGCCAA+TGG 0.565546 4_3:+47900881 Msa0644240:CDS
GTGATCTGAGGAACACCCCT+TGG 0.567797 4_3:-47900854 None:intergenic
GGAACAACATATTCATGTGT+TGG 0.568612 4_3:+47898681 Msa0644240:CDS
CAGCAGAGGACAAGACTACA+GGG 0.570449 4_3:+47900918 Msa0644240:CDS
GGAGGAGCCATGGAGGAGGA+TGG 0.577122 4_3:+47901307 Msa0644240:CDS
CTTCATCTTCATAAGAACCA+TGG 0.578877 4_3:-47899808 None:intergenic
CACAACCATTCCTACCAAGA+AGG 0.580287 4_3:+47900703 Msa0644240:CDS
TGGTTTGAGCAGTAGAGGAA+AGG 0.580792 4_3:-47900271 None:intergenic
CATTCCTACCAAGAAGGAGC+AGG 0.582400 4_3:+47900709 Msa0644240:CDS
TCACTTCTTACTATTGAGGA+AGG 0.584344 4_3:+47900074 Msa0644240:CDS
TGTATGAAGGCGAAAGAACA+AGG 0.586977 4_3:+47900777 Msa0644240:CDS
CAATCACCAATGACAAGGGT+AGG 0.589395 4_3:+47900957 Msa0644240:CDS
TAGTAGGGTTCATAGCAACT+TGG 0.589835 4_3:-47898818 None:intergenic
ATTATGGCTGGAAAAGGTGA+AGG 0.590193 4_3:+47898636 None:intergenic
GCAAGGATGTATCAAGGTGC+TGG 0.591076 4_3:+47901274 Msa0644240:CDS
TGCTGGAGGAGCCATGGAGG+AGG 0.593024 4_3:+47901303 Msa0644240:CDS
GACAAGATGAAGGAGCTGGA+GGG 0.594000 4_3:+47901232 Msa0644240:CDS
TGAGGGAAATGAGAAAGTAC+AGG 0.596958 4_3:+47900598 Msa0644240:CDS
TCCTGCAGTCTCCAAACCAA+GGG 0.603057 4_3:-47900651 None:intergenic
CTCCTGCAGTCTCCAAACCA+AGG 0.604106 4_3:-47900652 None:intergenic
GAAATCATAGCAAATGATCA+GGG 0.604960 4_3:+47898726 Msa0644240:CDS
TGGTTGGATGGAAATCAACT+TGG 0.605882 4_3:+47901190 Msa0644240:CDS
CAAGGGTAGGCTTTCCAAAG+AGG 0.607535 4_3:+47900970 Msa0644240:CDS
TTTGCAACCCTATCATTGCA+AGG 0.610006 4_3:+47901257 Msa0644240:CDS
GTGTTGATTCAGGTGTATGA+AGG 0.610158 4_3:+47900764 Msa0644240:CDS
CGTCAAGCTACCAAGGATGC+CGG 0.612550 4_3:+47899909 Msa0644240:CDS
AGAACTATGCCTACAACATG+AGG 0.614338 4_3:+47901080 Msa0644240:CDS
TGTGGTGAACTATAAGGCGG+AGG 0.616582 4_3:+47899755 Msa0644240:CDS
GACTGCTGCCCCATATGCAA+CGG 0.621746 4_3:-47900555 None:intergenic
TACAGAGCGACATGAAATTG+TGG 0.624043 4_3:+47899691 Msa0644240:CDS
TGGATCTACTAGGATTCCGA+AGG 0.625450 4_3:+47900466 Msa0644240:CDS
AGCTGAAAAGTACAAGTCTG+AGG 0.625787 4_3:+47901015 Msa0644240:CDS
ACCTACTCTGATAACCAACC+TGG 0.627630 4_3:+47900740 Msa0644240:CDS
GGATGGAAATCAACTTGGAG+AGG 0.632319 4_3:+47901195 Msa0644240:CDS
TGGTACAACAATTAAGAATG+CGG 0.632992 4_3:+47899851 Msa0644240:CDS
TAAGCAATAGCAGCAGCAGT+AGG 0.633763 4_3:-47899972 None:intergenic
AACACCTGCTCCTTCTTGGT+AGG 0.636528 4_3:-47900713 None:intergenic
AGACAAGATGAAGGAGCTGG+AGG 0.638733 4_3:+47901231 Msa0644240:CDS
GGAACACCCCTTGGAGCAGG+AGG 0.642035 4_3:-47900845 None:intergenic
GAAGATGAAGGAGATTGCAG+AGG 0.642514 4_3:+47899821 Msa0644240:CDS
GGTGCTGGTGGTGATGCTGG+AGG 0.646421 4_3:+47901289 Msa0644240:CDS
TCAAAGCAGACAGTGATCTG+AGG 0.646469 4_3:-47900866 None:intergenic
GGATATCAGTGGAAATCCGA+GGG 0.650254 4_3:+47900205 Msa0644240:CDS
AGGATATCAGTGGAAATCCG+AGG 0.651537 4_3:+47900204 Msa0644240:CDS
TACACCTGAATCAACACACC+AGG 0.652080 4_3:-47900758 None:intergenic
AATTGAAGATGCTATTGAGG+GGG 0.652473 4_3:+47901159 Msa0644240:CDS
ATTACAATCACCAATGACAA+GGG 0.655670 4_3:+47900953 Msa0644240:CDS
GGCATACCTCCTGCTCCAAG+GGG 0.657082 4_3:+47900839 Msa0644240:CDS
GATTACAATCACCAATGACA+AGG 0.657271 4_3:+47900952 Msa0644240:CDS
CCTGAATCAACACACCAGGT+TGG 0.659727 4_3:-47900754 None:intergenic
TTCACAACGTCAAGCTACCA+AGG 0.660328 4_3:+47899902 Msa0644240:CDS
CTGCTTGTGAGAGAGCCAAG+AGG 0.662258 4_3:+47900246 Msa0644240:CDS
ACCAGGTTGGTTATCAGAGT+AGG 0.664582 4_3:-47900741 None:intergenic
TGCTGACAAACCAATGATTG+TGG 0.668634 4_3:+47899737 Msa0644240:CDS
AGGATGTATCAAGGTGCTGG+TGG 0.672624 4_3:+47901277 Msa0644240:CDS
TTATGGCTGGAAAAGGTGAA+GGG 0.679450 4_3:+47898637 None:intergenic
TGATGCTGGAGGAGCCATGG+AGG 0.686392 4_3:+47901300 Msa0644240:CDS
AAATTGAAGATGCTATTGAG+GGG 0.691800 4_3:+47901158 Msa0644240:CDS
GATTGTGGTGAACTATAAGG+CGG 0.709553 4_3:+47899752 Msa0644240:CDS
ATTGAGTCCAGAAATGACAC+CGG 0.722092 4_3:-47899928 None:intergenic
GCTGGTGATACACATTTGGG+AGG 0.733697 4_3:+47900119 Msa0644240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAAAAATTTTACAATAATT+AGG - chr4_3:47898988-47899007 None:intergenic 10.0%
!! TTATTAAAAAAACAGATTAC+TGG - chr4_3:47899078-47899097 None:intergenic 15.0%
!!! GTTATTTTTATGTAGTAAAT+AGG + chr4_3:47899513-47899532 Msa0644240:intron 15.0%
!!! AAAATTTTTGATCTTCATCT+TGG + chr4_3:47898997-47899016 Msa0644240:intron 20.0%
!! TGGAACAGAATAAAATTAAA+AGG - chr4_3:47899211-47899230 None:intergenic 20.0%
!!! AAATTCACTTTTCTATCTTT+TGG - chr4_3:47899231-47899250 None:intergenic 20.0%
!!! ATTGATTTGGTTATATGATT+AGG + chr4_3:47899351-47899370 Msa0644240:intron 20.0%
!!! TTAAGTTTTAGTATGTAAGT+AGG + chr4_3:47899394-47899413 Msa0644240:intron 20.0%
!! AAACAATGAATCAATTTCAA+TGG - chr4_3:47900297-47900316 None:intergenic 20.0%
! ACTGAAACAGAATAAAACTT+CGG - chr4_3:47898894-47898913 None:intergenic 25.0%
!! TTTGAAATTTCTAATGCATG+AGG + chr4_3:47898953-47898972 Msa0644240:intron 25.0%
!!! GATTGTTGTTGATAATAACT+TGG + chr4_3:47899153-47899172 Msa0644240:intron 25.0%
!! TTTTGCATTGTTTATACGAT+TGG + chr4_3:47899278-47899297 Msa0644240:intron 25.0%
!!! ATTGGTTTGGTTATATGATT+AGG + chr4_3:47899296-47899315 Msa0644240:intron 25.0%
! CATTGTTTATACGATTGATT+TGG + chr4_3:47899338-47899357 Msa0644240:intron 25.0%
!! AGAAGTAAGATTGTTGATAA+TGG + chr4_3:47899557-47899576 Msa0644240:intron 25.0%
!! AATAAGAACATTCTTTTCAC+CGG - chr4_3:47900024-47900043 None:intergenic 25.0%
!!! AATGTTCTTATTTTCGATCT+TGG + chr4_3:47900032-47900051 Msa0644240:CDS 25.0%
!!! TGAAGATTTTGATAACAGAA+TGG + chr4_3:47900142-47900161 Msa0644240:CDS 25.0%
!! ATTTTGTTCAAGAATTCAAG+AGG + chr4_3:47900171-47900190 Msa0644240:CDS 25.0%
!! TGAAATTGATTCATTGTTTG+AGG + chr4_3:47900298-47900317 Msa0644240:CDS 25.0%
!! GAAATTGATTCATTGTTTGA+GGG + chr4_3:47900299-47900318 Msa0644240:CDS 25.0%
!! TGAGACATTTAAAATACCAT+TGG - chr4_3:47900900-47900919 None:intergenic 25.0%
! AAAATTGAAGATGCTATTGA+GGG + chr4_3:47901157-47901176 Msa0644240:CDS 25.0%
!! AATCAACTTCCTCAATTTTT+GGG - chr4_3:47901363-47901382 None:intergenic 25.0%
!! TAATCAACTTCCTCAATTTT+TGG - chr4_3:47901364-47901383 None:intergenic 25.0%
TGAAATCATAGCAAATGATC+AGG + chr4_3:47898725-47898744 Msa0644240:CDS 30.0%
GAAATCATAGCAAATGATCA+GGG + chr4_3:47898726-47898745 Msa0644240:CDS 30.0%
!! TTATGTTGCTTTCACTGATA+CGG + chr4_3:47898767-47898786 Msa0644240:CDS 30.0%
!! TTGATCTTCATCTTGGTTTT+AGG + chr4_3:47899004-47899023 Msa0644240:intron 30.0%
!!! GGTTTTAGGATTAGATGATT+AGG + chr4_3:47899018-47899037 Msa0644240:intron 30.0%
! CATTGTTTATACGATTGGTT+TGG + chr4_3:47899283-47899302 Msa0644240:intron 30.0%
! AGAAGTAAGATTGTTGATGA+TGG + chr4_3:47899438-47899457 Msa0644240:intron 30.0%
!!! TGTTGATAATGGTTTTGCAT+TGG + chr4_3:47899568-47899587 Msa0644240:intron 30.0%
TTATAGTTCACCACAATCAT+TGG - chr4_3:47899750-47899769 None:intergenic 30.0%
AATGATTGTGGTGAACTATA+AGG + chr4_3:47899749-47899768 Msa0644240:CDS 30.0%
TGGTACAACAATTAAGAATG+CGG + chr4_3:47899851-47899870 Msa0644240:CDS 30.0%
TGTTTCACTTCTTACTATTG+AGG + chr4_3:47900070-47900089 Msa0644240:CDS 30.0%
!!! TATTGAGGAAGGTATTTTTG+AGG + chr4_3:47900085-47900104 Msa0644240:CDS 30.0%
ATTCAAGAGGAAGAATAAGA+AGG + chr4_3:47900184-47900203 Msa0644240:CDS 30.0%
AAGAATAAGAAGGATATCAG+TGG + chr4_3:47900194-47900213 Msa0644240:CDS 30.0%
CAATGAATCAATTTCAATGG+TGG - chr4_3:47900294-47900313 None:intergenic 30.0%
! GGATTTGTTTAGAAAGTGTA+CGG + chr4_3:47900373-47900392 Msa0644240:CDS 30.0%
! CTTTTGCAAGATTTCTTCAA+TGG + chr4_3:47900497-47900516 Msa0644240:CDS 30.0%
!! TATTTTAAATGTCTCAGCAG+AGG + chr4_3:47900904-47900923 Msa0644240:CDS 30.0%
ATTACAATCACCAATGACAA+GGG + chr4_3:47900953-47900972 Msa0644240:CDS 30.0%
GAAAATTGAAGATGCTATTG+AGG + chr4_3:47901156-47901175 Msa0644240:CDS 30.0%
AAATTGAAGATGCTATTGAG+GGG + chr4_3:47901158-47901177 Msa0644240:CDS 30.0%
TGAATTTGAAGACAAGATGA+AGG + chr4_3:47901222-47901241 Msa0644240:CDS 30.0%
GGAACAACATATTCATGTGT+TGG + chr4_3:47898681-47898700 Msa0644240:CDS 35.0%
! CATATTCATGTGTTGGTGTT+TGG + chr4_3:47898688-47898707 Msa0644240:CDS 35.0%
TCAGTGAAAGCAACATAAGA+AGG - chr4_3:47898765-47898784 None:intergenic 35.0%
! AACCCTACTAACACTGTTTT+CGG + chr4_3:47898831-47898850 Msa0644240:CDS 35.0%
TACCGAAAACAGTGTTAGTA+GGG - chr4_3:47898836-47898855 None:intergenic 35.0%
TTACCGAAAACAGTGTTAGT+AGG - chr4_3:47898837-47898856 None:intergenic 35.0%
TCGGAAAATCAAGCATTAAG+AGG - chr4_3:47898875-47898894 None:intergenic 35.0%
ACTGATTGTGTTTGCTTGTT+TGG + chr4_3:47899617-47899636 Msa0644240:intron 35.0%
CTTCATCTTCATAAGAACCA+TGG - chr4_3:47899811-47899830 None:intergenic 35.0%
CATGGTTCTTATGAAGATGA+AGG + chr4_3:47899809-47899828 Msa0644240:CDS 35.0%
TGTGAATCATTGAAGTAAGC+AGG - chr4_3:47899888-47899907 None:intergenic 35.0%
GATAAGAAAGCTACAAGTAC+CGG + chr4_3:47900002-47900021 Msa0644240:CDS 35.0%
!!! GTTCTTATTTTCGATCTTGG+TGG + chr4_3:47900035-47900054 Msa0644240:CDS 35.0%
TCACTTCTTACTATTGAGGA+AGG + chr4_3:47900074-47900093 Msa0644240:CDS 35.0%
!! GTTGATGATGTTGTTCTAGT+TGG + chr4_3:47900443-47900462 Msa0644240:CDS 35.0%
TGCAAAAGTTGTTGAACCTT+CGG - chr4_3:47900485-47900504 None:intergenic 35.0%
GCAAGATTTCTTCAATGGAA+AGG + chr4_3:47900502-47900521 Msa0644240:CDS 35.0%
ACTCGTGATAACAATCTGTT+GGG + chr4_3:47900800-47900819 Msa0644240:CDS 35.0%
GATTACAATCACCAATGACA+AGG + chr4_3:47900952-47900971 Msa0644240:CDS 35.0%
CATCTTCTCAATTTCCTCTT+TGG - chr4_3:47900987-47901006 None:intergenic 35.0%
CAAAGAGGAAATTGAGAAGA+TGG + chr4_3:47900985-47901004 Msa0644240:CDS 35.0%
! ATAGTTCTCAAGCGCATTTT+TGG - chr4_3:47901068-47901087 None:intergenic 35.0%
AATTGAAGATGCTATTGAGG+GGG + chr4_3:47901159-47901178 Msa0644240:CDS 35.0%
GATACATCCTTGCAATGATA+GGG - chr4_3:47901267-47901286 None:intergenic 35.0%
TGATACATCCTTGCAATGAT+AGG - chr4_3:47901268-47901287 None:intergenic 35.0%
ATCATTGCAAGGATGTATCA+AGG + chr4_3:47901268-47901287 Msa0644240:CDS 35.0%
ACTGATACGGAACGTTTGAT+CGG + chr4_3:47898780-47898799 Msa0644240:CDS 40.0%
TAGTAGGGTTCATAGCAACT+TGG - chr4_3:47898821-47898840 None:intergenic 40.0%
!! TGTTGATGATGGTCTTGCAT+TGG + chr4_3:47899449-47899468 Msa0644240:intron 40.0%
ATCCTCAAGTGATTGTGCAT+AGG + chr4_3:47899491-47899510 Msa0644240:intron 40.0%
AACCTATGCACAATCACTTG+AGG - chr4_3:47899496-47899515 None:intergenic 40.0%
TCAGATGCCAAGCGTTTAAT+TGG + chr4_3:47899645-47899664 Msa0644240:intron 40.0%
ATGCCAAGCGTTTAATTGGT+AGG + chr4_3:47899649-47899668 Msa0644240:CDS 40.0%
TACAGAGCGACATGAAATTG+TGG + chr4_3:47899691-47899710 Msa0644240:CDS 40.0%
CATGAAATTGTGGCCATTCA+AGG + chr4_3:47899701-47899720 Msa0644240:CDS 40.0%
!! CAATCATTGGTTTGTCAGCA+GGG - chr4_3:47899737-47899756 None:intergenic 40.0%
!! ACAATCATTGGTTTGTCAGC+AGG - chr4_3:47899738-47899757 None:intergenic 40.0%
TGCTGACAAACCAATGATTG+TGG + chr4_3:47899737-47899756 Msa0644240:CDS 40.0%
GATTGTGGTGAACTATAAGG+CGG + chr4_3:47899752-47899771 Msa0644240:CDS 40.0%
TGCTGAAGAGATATCTTCCA+TGG + chr4_3:47899791-47899810 Msa0644240:CDS 40.0%
ATTGAGTCCAGAAATGACAC+CGG - chr4_3:47899931-47899950 None:intergenic 40.0%
!! CTTATTTTCGATCTTGGTGG+TGG + chr4_3:47900038-47900057 Msa0644240:CDS 40.0%
TACTGCTGGTGATACACATT+TGG + chr4_3:47900115-47900134 Msa0644240:CDS 40.0%
ACTGCTGGTGATACACATTT+GGG + chr4_3:47900116-47900135 Msa0644240:CDS 40.0%
CATGTTGAGCTCTTCAAAAC+GGG - chr4_3:47900354-47900373 None:intergenic 40.0%
CCATGTTGAGCTCTTCAAAA+CGG - chr4_3:47900355-47900374 None:intergenic 40.0%
!! AGCCTGTTGAGAAGTGTTTA+AGG + chr4_3:47900396-47900415 Msa0644240:CDS 40.0%
!! GCCTGTTGAGAAGTGTTTAA+GGG + chr4_3:47900397-47900416 Msa0644240:CDS 40.0%
TCCCTTAAACACTTCTCAAC+AGG - chr4_3:47900401-47900420 None:intergenic 40.0%
GTGTTTAAGGGATGCTAAGA+TGG + chr4_3:47900409-47900428 Msa0644240:CDS 40.0%
! GATGATGTTGTTCTAGTTGG+TGG + chr4_3:47900446-47900465 Msa0644240:CDS 40.0%
!! TTCTAGTTGGTGGATCTACT+AGG + chr4_3:47900456-47900475 Msa0644240:CDS 40.0%
! TGAGGGAAATGAGAAAGTAC+AGG + chr4_3:47900598-47900617 Msa0644240:CDS 40.0%
GTAGGAATGGTTGTGTTTCT+CGG - chr4_3:47900698-47900717 None:intergenic 40.0%
!! GTGTTGATTCAGGTGTATGA+AGG + chr4_3:47900764-47900783 Msa0644240:CDS 40.0%
TGTATGAAGGCGAAAGAACA+AGG + chr4_3:47900777-47900796 Msa0644240:CDS 40.0%
GACTCGTGATAACAATCTGT+TGG + chr4_3:47900799-47900818 Msa0644240:CDS 40.0%
TGCTTTGACATTGATGCCAA+TGG + chr4_3:47900881-47900900 Msa0644240:CDS 40.0%
! AGCTGAAAAGTACAAGTCTG+AGG + chr4_3:47901015-47901034 Msa0644240:CDS 40.0%
AAAGTACAAGTCTGAGGATG+AGG + chr4_3:47901021-47901040 Msa0644240:CDS 40.0%
AGAACTATGCCTACAACATG+AGG + chr4_3:47901080-47901099 Msa0644240:CDS 40.0%
GATTGTGTTCCTCATGTTGT+AGG - chr4_3:47901092-47901111 None:intergenic 40.0%
TGGTTGGATGGAAATCAACT+TGG + chr4_3:47901190-47901209 Msa0644240:CDS 40.0%
TTTGCAACCCTATCATTGCA+AGG + chr4_3:47901257-47901276 Msa0644240:CDS 40.0%
! CCTGCGATTGGAATCGATTT+GGG + chr4_3:47898660-47898679 Msa0644240:CDS 45.0%
TCGCCTACCAATTAAACGCT+TGG - chr4_3:47899655-47899674 None:intergenic 45.0%
TAGGCGAATCAGCGATGTTT+CGG + chr4_3:47899668-47899687 Msa0644240:CDS 45.0%
GAAGATGAAGGAGATTGCAG+AGG + chr4_3:47899821-47899840 Msa0644240:CDS 45.0%
GAGATTGCAGAGGCTTATCT+TGG + chr4_3:47899831-47899850 Msa0644240:CDS 45.0%
TTCACAACGTCAAGCTACCA+AGG + chr4_3:47899902-47899921 Msa0644240:CDS 45.0%
TAAGCAATAGCAGCAGCAGT+AGG - chr4_3:47899975-47899994 None:intergenic 45.0%
ACTGCTGCTGCTATTGCTTA+TGG + chr4_3:47899975-47899994 Msa0644240:CDS 45.0%
! TTTGAGGTGAAAGCTACTGC+TGG + chr4_3:47900101-47900120 Msa0644240:CDS 45.0%
AGGATATCAGTGGAAATCCG+AGG + chr4_3:47900204-47900223 Msa0644240:CDS 45.0%
GGATATCAGTGGAAATCCGA+GGG + chr4_3:47900205-47900224 Msa0644240:CDS 45.0%
GGTTTGAGCAGTAGAGGAAA+GGG - chr4_3:47900273-47900292 None:intergenic 45.0%
TGGTTTGAGCAGTAGAGGAA+AGG - chr4_3:47900274-47900293 None:intergenic 45.0%
AATGGTGGTTTGAGCAGTAG+AGG - chr4_3:47900279-47900298 None:intergenic 45.0%
!!! CCGTTTTGAAGAGCTCAACA+TGG + chr4_3:47900352-47900371 Msa0644240:CDS 45.0%
TGGATCTACTAGGATTCCGA+AGG + chr4_3:47900466-47900485 Msa0644240:CDS 45.0%
CTGATGAAGCCGTTGCATAT+GGG + chr4_3:47900546-47900565 Msa0644240:CDS 45.0%
TGATGAAGCCGTTGCATATG+GGG + chr4_3:47900547-47900566 Msa0644240:CDS 45.0%
!!! GTCCAAGCTGCTATTTTGAG+TGG + chr4_3:47900575-47900594 Msa0644240:CDS 45.0%
CACCACTCAAAATAGCAGCT+TGG - chr4_3:47900580-47900599 None:intergenic 45.0%
!!! AGCTGCTATTTTGAGTGGTG+AGG + chr4_3:47900580-47900599 Msa0644240:CDS 45.0%
!!! GCTGCTATTTTGAGTGGTGA+GGG + chr4_3:47900581-47900600 Msa0644240:CDS 45.0%
AGTACAGGATCTGTTGTTGC+TGG + chr4_3:47900613-47900632 Msa0644240:CDS 45.0%
GATGTTACTCCTCTTTCCCT+TGG + chr4_3:47900635-47900654 Msa0644240:CDS 45.0%
TACTCCTCTTTCCCTTGGTT+TGG + chr4_3:47900640-47900659 Msa0644240:CDS 45.0%
CACAACCATTCCTACCAAGA+AGG + chr4_3:47900703-47900722 Msa0644240:CDS 45.0%
ACCTACTCTGATAACCAACC+TGG + chr4_3:47900740-47900759 Msa0644240:CDS 45.0%
!! ACCAGGTTGGTTATCAGAGT+AGG - chr4_3:47900744-47900763 None:intergenic 45.0%
TACACCTGAATCAACACACC+AGG - chr4_3:47900761-47900780 None:intergenic 45.0%
!! GTTGGGCAAGTTTGAGTTGT+CGG + chr4_3:47900817-47900836 Msa0644240:CDS 45.0%
!! TTGGGCAAGTTTGAGTTGTC+GGG + chr4_3:47900818-47900837 Msa0644240:CDS 45.0%
TCAAAGCAGACAGTGATCTG+AGG - chr4_3:47900869-47900888 None:intergenic 45.0%
CAATCACCAATGACAAGGGT+AGG + chr4_3:47900957-47900976 Msa0644240:CDS 45.0%
GGAAATTGAGAAGATGGTGC+AGG + chr4_3:47900991-47901010 Msa0644240:CDS 45.0%
! GGATGAGGAGCACAAAAAGA+AGG + chr4_3:47901036-47901055 Msa0644240:CDS 45.0%
! TGAGGAGCACAAAAAGAAGG+TGG + chr4_3:47901039-47901058 Msa0644240:CDS 45.0%
CTATTGAGGGGGCTATTCAA+TGG + chr4_3:47901170-47901189 Msa0644240:CDS 45.0%
GGATGGAAATCAACTTGGAG+AGG + chr4_3:47901195-47901214 Msa0644240:CDS 45.0%
TGAAGACAAGATGAAGGAGC+TGG + chr4_3:47901228-47901247 Msa0644240:CDS 45.0%
GCCTGCGATTGGAATCGATT+TGG + chr4_3:47898659-47898678 Msa0644240:CDS 50.0%
! CCCAAATCGATTCCAATCGC+AGG - chr4_3:47898663-47898682 None:intergenic 50.0%
TGGCCATTCAAGGTCATTCC+TGG + chr4_3:47899711-47899730 Msa0644240:CDS 50.0%
TGTGGTGAACTATAAGGCGG+AGG + chr4_3:47899755-47899774 Msa0644240:CDS 50.0%
AGAAATGACACCGGCATCCT+TGG - chr4_3:47899922-47899941 None:intergenic 50.0%
!! AAGGATGCCGGTGTCATTTC+TGG + chr4_3:47899921-47899940 Msa0644240:CDS 50.0%
GCTGGTGATACACATTTGGG+AGG + chr4_3:47900119-47900138 Msa0644240:CDS 50.0%
CTCAATCTTCTCAGAGCCCT+CGG - chr4_3:47900224-47900243 None:intergenic 50.0%
AGTAGAGGAAAGGGTCCTCT+TGG - chr4_3:47900264-47900283 None:intergenic 50.0%
CCATATGCAACGGCTTCATC+AGG - chr4_3:47900548-47900567 None:intergenic 50.0%
CCTGATGAAGCCGTTGCATA+TGG + chr4_3:47900545-47900564 Msa0644240:CDS 50.0%
GTCTCCAAACCAAGGGAAAG+AGG - chr4_3:47900647-47900666 None:intergenic 50.0%
TCCTGCAGTCTCCAAACCAA+GGG - chr4_3:47900654-47900673 None:intergenic 50.0%
CTGCTCCTTCTTGGTAGGAA+TGG - chr4_3:47900711-47900730 None:intergenic 50.0%
CATTCCTACCAAGAAGGAGC+AGG + chr4_3:47900709-47900728 Msa0644240:CDS 50.0%
AACACCTGCTCCTTCTTGGT+AGG - chr4_3:47900716-47900735 None:intergenic 50.0%
CGAAAACACCTGCTCCTTCT+TGG - chr4_3:47900720-47900739 None:intergenic 50.0%
CCTGAATCAACACACCAGGT+TGG - chr4_3:47900757-47900776 None:intergenic 50.0%
!! CCAACCTGGTGTGTTGATTC+AGG + chr4_3:47900754-47900773 Msa0644240:CDS 50.0%
TCAGCAGAGGACAAGACTAC+AGG + chr4_3:47900917-47900936 Msa0644240:CDS 50.0%
CAGCAGAGGACAAGACTACA+GGG + chr4_3:47900918-47900937 Msa0644240:CDS 50.0%
GGAAAGCCTACCCTTGTCAT+TGG - chr4_3:47900966-47900985 None:intergenic 50.0%
CAAGGGTAGGCTTTCCAAAG+AGG + chr4_3:47900970-47900989 Msa0644240:CDS 50.0%
GGAGCACAAAAAGAAGGTGG+AGG + chr4_3:47901042-47901061 Msa0644240:CDS 50.0%
TGAGGGGGCTATTCAATGGT+TGG + chr4_3:47901174-47901193 Msa0644240:CDS 50.0%
GGGGCTATTCAATGGTTGGA+TGG + chr4_3:47901178-47901197 Msa0644240:CDS 50.0%
AGACAAGATGAAGGAGCTGG+AGG + chr4_3:47901231-47901250 Msa0644240:CDS 50.0%
GACAAGATGAAGGAGCTGGA+GGG + chr4_3:47901232-47901251 Msa0644240:CDS 50.0%
GCAAGGATGTATCAAGGTGC+TGG + chr4_3:47901274-47901293 Msa0644240:CDS 50.0%
!! AGGATGTATCAAGGTGCTGG+TGG + chr4_3:47901277-47901296 Msa0644240:CDS 50.0%
!! TGGTGCTGGCCCAAAAATTG+AGG + chr4_3:47901351-47901370 Msa0644240:CDS 50.0%
AAAGGTGAAGGGCCTGCGAT+TGG + chr4_3:47898648-47898667 Msa0644240:CDS 55.0%
GGGCCAGGAATGACCTTGAA+TGG - chr4_3:47899717-47899736 None:intergenic 55.0%
!! ATTGGTTTGTCAGCAGGGCC+AGG - chr4_3:47899732-47899751 None:intergenic 55.0%
CGTCAAGCTACCAAGGATGC+CGG + chr4_3:47899909-47899928 Msa0644240:CDS 55.0%
CTGCTTGTGAGAGAGCCAAG+AGG + chr4_3:47900246-47900265 Msa0644240:CDS 55.0%
GACTGCTGCCCCATATGCAA+CGG - chr4_3:47900558-47900577 None:intergenic 55.0%
!! TCCCTTGGTTTGGAGACTGC+AGG + chr4_3:47900650-47900669 Msa0644240:CDS 55.0%
CTCCTGCAGTCTCCAAACCA+AGG - chr4_3:47900655-47900674 None:intergenic 55.0%
!! CTTGGTTTGGAGACTGCAGG+AGG + chr4_3:47900653-47900672 Msa0644240:CDS 55.0%
GTGATCTGAGGAACACCCCT+TGG - chr4_3:47900857-47900876 None:intergenic 55.0%
GGGCATACCTCCTGCTCCAA+GGG + chr4_3:47900838-47900857 Msa0644240:CDS 60.0%
GGCATACCTCCTGCTCCAAG+GGG + chr4_3:47900839-47900858 Msa0644240:CDS 60.0%
TGAGGAACACCCCTTGGAGC+AGG - chr4_3:47900851-47900870 None:intergenic 60.0%
!! CAAGGTGCTGGTGGTGATGC+TGG + chr4_3:47901286-47901305 Msa0644240:CDS 60.0%
! TGGTGATGCTGGAGGAGCCA+TGG + chr4_3:47901297-47901316 Msa0644240:CDS 60.0%
TGATGCTGGAGGAGCCATGG+AGG + chr4_3:47901300-47901319 Msa0644240:CDS 60.0%
AGCAGGACCATCCTCCTCCA+TGG - chr4_3:47901317-47901336 None:intergenic 60.0%
CGGGCATACCTCCTGCTCCA+AGG + chr4_3:47900837-47900856 Msa0644240:CDS 65.0%
GGAACACCCCTTGGAGCAGG+AGG - chr4_3:47900848-47900867 None:intergenic 65.0%
!! GGTGCTGGTGGTGATGCTGG+AGG + chr4_3:47901289-47901308 Msa0644240:CDS 65.0%
TGCTGGAGGAGCCATGGAGG+AGG + chr4_3:47901303-47901322 Msa0644240:CDS 65.0%
GGAGGAGCCATGGAGGAGGA+TGG + chr4_3:47901307-47901326 Msa0644240:CDS 65.0%
GAGGAGGATGGTCCTGCTGC+TGG + chr4_3:47901319-47901338 Msa0644240:CDS 65.0%
GATGGTCCTGCTGCTGGCAG+TGG + chr4_3:47901325-47901344 Msa0644240:CDS 65.0%
CCACTTCCACTGCCAGCAGC+AGG - chr4_3:47901334-47901353 None:intergenic 65.0%
CCTGCTGCTGGCAGTGGAAG+TGG + chr4_3:47901331-47901350 Msa0644240:CDS 65.0%
GCTGGCAGTGGAAGTGGTGC+TGG + chr4_3:47901337-47901356 Msa0644240:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 47898639 47901384 47898639 ID=Msa0644240;Name=Msa0644240
chr4_3 mRNA 47898639 47901384 47898639 ID=Msa0644240-mRNA-1;Parent=Msa0644240;Name=Msa0644240-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|649
chr4_3 exon 47898639 47898852 47898639 ID=Msa0644240-mRNA-1:exon:11371;Parent=Msa0644240-mRNA-1
chr4_3 exon 47899649 47901384 47899649 ID=Msa0644240-mRNA-1:exon:11372;Parent=Msa0644240-mRNA-1
chr4_3 CDS 47898639 47898852 47898639 ID=Msa0644240-mRNA-1:cds;Parent=Msa0644240-mRNA-1
chr4_3 CDS 47899649 47901384 47899649 ID=Msa0644240-mRNA-1:cds;Parent=Msa0644240-mRNA-1
Gene Sequence

>Msa0644240

ATGGCTGGAAAAGGTGAAGGGCCTGCGATTGGAATCGATTTGGGAACAACATATTCATGTGTTGGTGTTTGGCAACATGATCGTGTTGAAATCATAGCAAATGATCAGGGTAACAGAACTACTCCTTCTTATGTTGCTTTCACTGATACGGAACGTTTGATCGGTGATGCTGCTAAGAACCAAGTTGCTATGAACCCTACTAACACTGTTTTCGATGCCAAGCGTTTAATTGGTAGGCGAATCAGCGATGTTTCGGTACAGAGCGACATGAAATTGTGGCCATTCAAGGTCATTCCTGGCCCTGCTGACAAACCAATGATTGTGGTGAACTATAAGGCGGAGGAGAAACAATTTTCTGCTGAAGAGATATCTTCCATGGTTCTTATGAAGATGAAGGAGATTGCAGAGGCTTATCTTGGTACAACAATTAAGAATGCGGTTGTAACTGTGCCTGCTTACTTCAATGATTCACAACGTCAAGCTACCAAGGATGCCGGTGTCATTTCTGGACTCAATGTAATGAGAATCATTAATGAACCTACTGCTGCTGCTATTGCTTATGGTCTTGATAAGAAAGCTACAAGTACCGGTGAAAAGAATGTTCTTATTTTCGATCTTGGTGGTGGAACTTTTGATGTTTCACTTCTTACTATTGAGGAAGGTATTTTTGAGGTGAAAGCTACTGCTGGTGATACACATTTGGGAGGTGAAGATTTTGATAACAGAATGGTGAATCATTTTGTTCAAGAATTCAAGAGGAAGAATAAGAAGGATATCAGTGGAAATCCGAGGGCTCTGAGAAGATTGAGAACTGCTTGTGAGAGAGCCAAGAGGACCCTTTCCTCTACTGCTCAAACCACCATTGAAATTGATTCATTGTTTGAGGGTATTGACTTTTACACTACTATTACTCGTGCCCGTTTTGAAGAGCTCAACATGGATTTGTTTAGAAAGTGTACGGAGCCTGTTGAGAAGTGTTTAAGGGATGCTAAGATGGATAAGAACAGTGTTGATGATGTTGTTCTAGTTGGTGGATCTACTAGGATTCCGAAGGTTCAACAACTTTTGCAAGATTTCTTCAATGGAAAGGAGCTATGTAAGAGCATCAATCCTGATGAAGCCGTTGCATATGGGGCAGCAGTCCAAGCTGCTATTTTGAGTGGTGAGGGAAATGAGAAAGTACAGGATCTGTTGTTGCTGGATGTTACTCCTCTTTCCCTTGGTTTGGAGACTGCAGGAGGTGTCATGACTGTGTTGATTCCGAGAAACACAACCATTCCTACCAAGAAGGAGCAGGTGTTTTCGACCTACTCTGATAACCAACCTGGTGTGTTGATTCAGGTGTATGAAGGCGAAAGAACAAGGACTCGTGATAACAATCTGTTGGGCAAGTTTGAGTTGTCGGGCATACCTCCTGCTCCAAGGGGTGTTCCTCAGATCACTGTCTGCTTTGACATTGATGCCAATGGTATTTTAAATGTCTCAGCAGAGGACAAGACTACAGGGCAGAAAAATAAGATTACAATCACCAATGACAAGGGTAGGCTTTCCAAAGAGGAAATTGAGAAGATGGTGCAGGAAGCTGAAAAGTACAAGTCTGAGGATGAGGAGCACAAAAAGAAGGTGGAGGCCAAAAATGCGCTTGAGAACTATGCCTACAACATGAGGAACACAATCAAAGACGACAAGATTGCTTCGAAGTTGTCTGCTGATGATAAGAAGAAAATTGAAGATGCTATTGAGGGGGCTATTCAATGGTTGGATGGAAATCAACTTGGAGAGGCTGATGAATTTGAAGACAAGATGAAGGAGCTGGAGGGCATTTGCAACCCTATCATTGCAAGGATGTATCAAGGTGCTGGTGGTGATGCTGGAGGAGCCATGGAGGAGGATGGTCCTGCTGCTGGCAGTGGAAGTGGTGCTGGCCCAAAAATTGAGGAAGTTGATTAA
Protein sequence

>Msa0644240

MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRISDVSVQSDMKLWPFKVIPGPADKPMIVVNYKAEEKQFSAEEISSMVLMKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKATSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLFEGIDFYTTITRARFEELNMDLFRKCTEPVEKCLRDAKMDKNSVDDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDDKIASKLSADDKKKIEDAIEGAIQWLDGNQLGEADEFEDKMKELEGICNPIIARMYQGAGGDAGGAMEEDGPAAGSGSGAGPKIEEVD*