AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0887720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0887720 MtrunA17_Chr6g0469201 95.213 188 9 0 1 188 1 188 1.34e-125 369
Msa0887720 MtrunA17_Chr1g0202601 92.021 188 15 0 1 188 6 193 2.02e-121 358
Msa0887720 MtrunA17_Chr5g0446951 90.323 186 18 0 1 186 1 186 2.79e-116 345
Msa0887720 MtrunA17_Chr5g0446941 90.323 186 18 0 1 186 1 186 2.79e-116 345
Msa0887720 MtrunA17_Chr1g0156731 59.574 188 70 2 2 185 75 260 5.51e-68 221
Msa0887720 MtrunA17_Chr5g0420861 52.604 192 84 4 4 188 81 272 3.14e-58 194
Msa0887720 MtrunA17_Chr5g0447581 53.514 185 79 4 4 181 89 273 1.19e-57 193
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0887720 AT5G52640.1 92.553 188 14 0 1 188 1 188 7.25e-122 360
Msa0887720 AT5G56030.1 91.398 186 16 0 1 186 1 186 1.13e-118 352
Msa0887720 AT5G56010.1 91.892 185 15 0 1 185 1 185 1.74e-118 351
Msa0887720 AT5G56000.1 91.892 185 15 0 1 185 1 185 2.00e-118 351
Msa0887720 AT5G56030.2 79.070 215 16 1 1 186 1 215 3.04e-112 336
Msa0887720 AT4G24190.1 59.358 187 74 2 2 186 74 260 1.19e-67 221
Msa0887720 AT4G24190.2 59.358 187 74 2 2 186 74 260 1.28e-67 221
Msa0887720 AT3G07770.1 55.135 185 76 4 4 181 94 278 1.57e-59 199
Msa0887720 AT3G07770.3 55.135 185 76 4 4 181 94 278 1.57e-59 199
Msa0887720 AT3G07770.2 55.135 185 76 4 4 181 94 278 1.57e-59 199
Msa0887720 AT2G04030.2 53.125 192 83 4 4 188 76 267 2.31e-58 195
Msa0887720 AT2G04030.1 53.125 192 83 4 4 188 76 267 2.63e-58 195

Find 191 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGTTGTTCATCTTCTTTC+TGG 0.055108 6_1:-50299190 None:intergenic
CACACCTTCTTCTTCCTTCT+TGG 0.101531 6_1:-50298893 None:intergenic
TTATGACCATTTGGAATATT+TGG 0.140697 6_1:+50298753 Msa0887720:three_prime_UTR
TGTAACTCAGAGATTAAATT+AGG 0.150073 6_1:+50298645 Msa0887720:three_prime_UTR
TTTCTCAAAGAATTTGAAAT+TGG 0.159756 6_1:+50299449 Msa0887720:three_prime_UTR
TTTAGATTTGGTGAACAATT+TGG 0.175778 6_1:+50297980 Msa0887720:intron
CTTCTGCCCTTCTTTCATTC+TGG 0.190465 6_1:-50299574 None:intergenic
GATTCATAGGATGTTGAAAT+TGG 0.209435 6_1:+50300193 Msa0887720:three_prime_UTR
TCATCCTTGGTGATCTCTTC+TGG 0.247953 6_1:-50299030 None:intergenic
TCCTCCATAATGCCATTATC+AGG 0.264576 6_1:-50300044 None:intergenic
CTAAACTTTGCTAAAACTAT+TGG 0.269542 6_1:+50298279 Msa0887720:exon
CACTGACTTATCATTCTTAT+CGG 0.275665 6_1:-50300087 None:intergenic
TTCTCGGTCCAAAGGTAAAT+TGG 0.288081 6_1:-50298829 None:intergenic
TTTGGAAGAGAGGAGAATTA+AGG 0.289713 6_1:+50298771 Msa0887720:three_prime_UTR
GATGAACCAAACACCTTTGC+TGG 0.301565 6_1:+50300167 Msa0887720:three_prime_UTR
TGGATTCTACTCTGCTTATC+TGG 0.302305 6_1:+50298088 Msa0887720:CDS
CTCTTTCTCAGTAGTCTTCT+CGG 0.302709 6_1:-50298845 None:intergenic
CAACCCTGATAATGGCATTA+TGG 0.307593 6_1:+50300040 Msa0887720:three_prime_UTR
TTCATTGATGACATGATAAT+AGG 0.309468 6_1:-50300429 None:intergenic
TATAGATTGGAATGTTAATA+TGG 0.312039 6_1:+50300322 Msa0887720:three_prime_UTR
ACACCTTCTTCTTCCTTCTT+GGG 0.312537 6_1:-50298892 None:intergenic
TTTCATCACATTACGATAGA+TGG 0.326802 6_1:-50300601 None:intergenic
AGAGTACGACGGGAAGAAAT+TGG 0.333339 6_1:+50299731 Msa0887720:three_prime_UTR
TGAAGGCTTTGGACAAAATT+CGG 0.333528 6_1:+50297415 Msa0887720:intron
TCTCTACAAAACGTCCCTAA+TGG 0.338155 6_1:-50298354 None:intergenic
GTCTTGATAGTTATGGGTGT+TGG 0.339488 6_1:+50300378 Msa0887720:three_prime_UTR
TTAGATTTGGTGAACAATTT+GGG 0.341267 6_1:+50297981 Msa0887720:intron
GTGAGCATGATTGGTCAATT+TGG 0.347539 6_1:+50298062 Msa0887720:CDS
CAGCAAGTTTAGCCCTGTTC+TGG 0.354753 6_1:-50299488 None:intergenic
TTCACGAATCCAAGGTATTC+CGG 0.354766 6_1:-50299264 None:intergenic
TTTGAGGAAAAGAGTGATCT+TGG 0.357250 6_1:-50298234 None:intergenic
AAATCGTATAATTAATATAC+TGG 0.365403 6_1:-50298518 None:intergenic
GTAACTCAGAGATTAAATTA+GGG 0.368374 6_1:+50298646 Msa0887720:three_prime_UTR
ATGGAAATCAACCCTGATAA+TGG 0.371034 6_1:+50300032 Msa0887720:three_prime_UTR
TTCTCAAAGAATTTGAAATT+GGG 0.375877 6_1:+50299450 Msa0887720:three_prime_UTR
TTAGCTATCCAATTTACCTT+TGG 0.384432 6_1:+50298821 Msa0887720:three_prime_UTR
CAGGGTTATGAAGGAAATCT+TGG 0.384963 6_1:+50299848 Msa0887720:three_prime_UTR
ACAACATAAAGCTTTATGTT+AGG 0.386775 6_1:+50299205 Msa0887720:three_prime_UTR
TTGACTAAAAGCTTATAGAT+TGG 0.390497 6_1:+50300309 Msa0887720:three_prime_UTR
GGGCTATGAAGTTCTCTTCA+TGG 0.391949 6_1:+50299671 Msa0887720:three_prime_UTR
ACAAGATCTTGAAGGTGATT+AGG 0.395627 6_1:+50299346 Msa0887720:three_prime_UTR
ATCCTTCCAGCAAAGGTGTT+TGG 0.396070 6_1:-50300173 None:intergenic
GTCTGGAACCAAGGAGTTCA+TGG 0.398629 6_1:+50298016 Msa0887720:CDS
CTGAGGGACAGCAGCATGGC+AGG 0.404400 6_1:+50299987 Msa0887720:three_prime_UTR
ACTGATAAGAGTAAGCTTGA+TGG 0.406274 6_1:+50297450 Msa0887720:CDS
CCTTTGCTGGAAGGATTCAT+AGG 0.408465 6_1:+50300180 Msa0887720:three_prime_UTR
TGTTGATTCTCCATGCTGTT+TGG 0.410104 6_1:+50299908 Msa0887720:three_prime_UTR
AGAGTGTTGTTGGCTTTGTC+AGG 0.410966 6_1:-50297501 None:intergenic
TCTGGCTTACGCAGCCAGAT+TGG 0.415664 6_1:-50299012 None:intergenic
CTCTACAAAACGTCCCTAAT+GGG 0.415752 6_1:-50298353 None:intergenic
TTGGGTACTATTGCGAGGTC+TGG 0.416612 6_1:+50297999 Msa0887720:CDS
TCTTGATAGTTATGGGTGTT+GGG 0.417519 6_1:+50300379 Msa0887720:three_prime_UTR
GGAAGAAGAAGGTGTGGTCG+AGG 0.418375 6_1:+50298900 Msa0887720:three_prime_UTR
CTAAACTTGCTGATTTGCTT+AGG 0.419861 6_1:+50299499 Msa0887720:three_prime_UTR
CAATGCCTCCATGAACTCCT+TGG 0.420992 6_1:-50298024 None:intergenic
TGTGGAAAACTCTCCATTCT+TGG 0.421410 6_1:+50299632 Msa0887720:three_prime_UTR
CATCACCACTCTTGGTAGAA+TGG 0.422395 6_1:-50299524 None:intergenic
CTCATCATCATTGTGCTTGG+TGG 0.423723 6_1:-50298132 None:intergenic
CAAGTGCTCTTCCCAGTCAT+TGG 0.425192 6_1:-50299079 None:intergenic
CATCACTGGAGAGAGCAAAA+AGG 0.428738 6_1:+50299608 Msa0887720:three_prime_UTR
AATCATGAGATTACCTGCTT+TGG 0.428794 6_1:-50297553 None:intergenic
AAACTACCTGATCCTCTTTG+AGG 0.436988 6_1:-50298250 None:intergenic
TCCATCATTGACAGTGGCAT+TGG 0.438096 6_1:+50297525 Msa0887720:CDS
TTCATGAAGATAGCCAGAAC+AGG 0.438466 6_1:+50299475 Msa0887720:three_prime_UTR
CATGTCTAGCAAGAAAACTA+TGG 0.450629 6_1:+50300013 Msa0887720:three_prime_UTR
TCCAATGCCACTGTCAATGA+TGG 0.459853 6_1:-50297526 None:intergenic
TGTGAAGCATTTCTCTGTTG+AGG 0.460182 6_1:+50299104 Msa0887720:three_prime_UTR
GGAAATCTTGGGAGATAAAG+TGG 0.461575 6_1:+50299860 Msa0887720:three_prime_UTR
GTGAAGCATTTCTCTGTTGA+GGG 0.463724 6_1:+50299105 Msa0887720:three_prime_UTR
TTCTTCAGTCTCTCCAAGAA+TGG 0.464380 6_1:-50299645 None:intergenic
AGTCATTTCATCACCACTCT+TGG 0.469040 6_1:-50299532 None:intergenic
TGTTAGGAGGGTGTTCATCA+TGG 0.470081 6_1:+50299221 Msa0887720:three_prime_UTR
ATTCATAGGATGTTGAAATT+GGG 0.470095 6_1:+50300194 Msa0887720:three_prime_UTR
GGTGCTGATGTGAGCATGAT+TGG 0.470270 6_1:+50298053 Msa0887720:CDS
TCTCGATCGAGTTTCTTCAA+TGG 0.470383 6_1:+50296689 Msa0887720:exon
GCTCTATGATTTCTGTAACT+TGG 0.480719 6_1:+50298561 Msa0887720:three_prime_UTR
AGCATTGATGAGGATGAATC+TGG 0.480909 6_1:+50300221 Msa0887720:three_prime_UTR
ATGGTCACCTCCACAAAGTC+AGG 0.483984 6_1:-50300530 None:intergenic
GGCATTGGAATGACCAAAGC+AGG 0.484062 6_1:+50297540 Msa0887720:CDS
CAATGACTGGGAAGAGCACT+TGG 0.487652 6_1:+50299080 Msa0887720:three_prime_UTR
TATTGCGAGGTCTGGAACCA+AGG 0.488111 6_1:+50298007 Msa0887720:CDS
TCTCCATGCTGTTTGGTGAC+CGG 0.488224 6_1:+50299915 Msa0887720:three_prime_UTR
GGAGAAGAAGAAATCCTTTG+AGG 0.489750 6_1:+50299818 Msa0887720:three_prime_UTR
ATGATGATGAGCAATACGTT+TGG 0.491490 6_1:+50298144 Msa0887720:CDS
TCTCTTCCAAATATTCCAAA+TGG 0.495356 6_1:-50298759 None:intergenic
TCAACAAGCAGAAACCAATC+TGG 0.496727 6_1:+50298998 Msa0887720:three_prime_UTR
TAAAACGTAACCTGACTTTG+TGG 0.505246 6_1:+50300520 Msa0887720:three_prime_UTR
AATCCTTTGAGGATCTCTGC+AGG 0.505467 6_1:+50299829 Msa0887720:three_prime_UTR
GGAGAGAATCATGAAGGCTC+AGG 0.506844 6_1:+50299962 Msa0887720:three_prime_UTR
CTGGTATCAAACAAATCAAA+GGG 0.509305 6_1:-50299171 None:intergenic
AATGATGGAAAGAGTGTTGT+TGG 0.510020 6_1:-50297511 None:intergenic
ACATAAAGCTTTATGTTAGG+AGG 0.511591 6_1:+50299208 Msa0887720:three_prime_UTR
TGTTTGGTGACCGGCGAATA+CGG 0.516052 6_1:+50299924 Msa0887720:three_prime_UTR
CAAAGGTGTTTGGTTCATCA+AGG 0.517696 6_1:-50300163 None:intergenic
ACAAGAGCCTAACCAATGAC+TGG 0.518480 6_1:+50299067 Msa0887720:three_prime_UTR
CTGAAGGTGAACAACTTGGT+AGG 0.518707 6_1:+50298207 Msa0887720:CDS
CATGAAGGCTCAGGCTCTGA+GGG 0.518828 6_1:+50299971 Msa0887720:three_prime_UTR
GCTCTTCCCAGTCATTGGTT+AGG 0.519608 6_1:-50299074 None:intergenic
GAAGTATGGTGGGTGATGGT+AGG 0.519637 6_1:+50300661 Msa0887720:three_prime_UTR
TGTGATGAAACTCACAAATA+CGG 0.523728 6_1:+50300614 Msa0887720:three_prime_UTR
GGATCTCTGCAGGGTTATGA+AGG 0.525177 6_1:+50299839 Msa0887720:three_prime_UTR
AGGGTTATGAAGGAAATCTT+GGG 0.525512 6_1:+50299849 Msa0887720:three_prime_UTR
ATAAGCCTAATGAAAAGCTC+TGG 0.527027 6_1:-50297477 None:intergenic
CTTGGGAGATAAAGTGGAGA+AGG 0.529149 6_1:+50299866 Msa0887720:three_prime_UTR
ATTTGGAATATTTGGAAGAG+AGG 0.531946 6_1:+50298761 Msa0887720:three_prime_UTR
AAGGACATTTACTACATCAC+TGG 0.532436 6_1:+50299594 Msa0887720:three_prime_UTR
CAATGAGATCGCTGAGAACA+AGG 0.532766 6_1:+50299401 Msa0887720:three_prime_UTR
TTATGGAGGAATTGAGGAAG+AGG 0.532809 6_1:+50300057 Msa0887720:three_prime_UTR
GAAATTGGTTTCAGCTACAA+AGG 0.533335 6_1:+50299746 Msa0887720:three_prime_UTR
GAAAGCAGCATATTCATCCT+TGG 0.533712 6_1:-50299043 None:intergenic
TACAAAGGAAGGACTGAAGC+TGG 0.533934 6_1:+50299761 Msa0887720:three_prime_UTR
AGTCTGTAGATGTTTAATGT+TGG 0.534758 6_1:+50298422 Msa0887720:three_prime_UTR
TGAAGGTGAACAACTTGGTA+GGG 0.535597 6_1:+50298208 Msa0887720:CDS
ATACGGATGGACTGCTAACA+TGG 0.536018 6_1:+50299941 Msa0887720:three_prime_UTR
TTGGTTTCAGCTACAAAGGA+AGG 0.536846 6_1:+50299750 Msa0887720:three_prime_UTR
GCAACAGAACAAGATCTTGA+AGG 0.537336 6_1:+50299338 Msa0887720:three_prime_UTR
TGGTGCTGAGGAGAGCAAGA+TGG 0.537641 6_1:+50300280 Msa0887720:three_prime_UTR
TGATGAAATGACTAGCTTGA+AGG 0.540040 6_1:+50299542 Msa0887720:three_prime_UTR
TTCATGGAGGCATTGCAAGC+TGG 0.543430 6_1:+50298032 Msa0887720:CDS
TGATGTTGATATGCCTCCAT+TGG 0.544162 6_1:+50300250 Msa0887720:three_prime_UTR
TCAGCACCATCTTCTTCCAA+TGG 0.546256 6_1:-50300266 None:intergenic
TAAGGAGGTTTCTCATGAGT+GGG 0.546729 6_1:+50298969 Msa0887720:three_prime_UTR
CTTGGAGAGACTGAAGAAGA+GGG 0.547661 6_1:+50299650 Msa0887720:three_prime_UTR
AGAAGGTAGTTGTCTCTGAT+AGG 0.548727 6_1:+50299883 Msa0887720:three_prime_UTR
TTGCTCATCATCATTGTGCT+TGG 0.548971 6_1:-50298135 None:intergenic
GACAACTGAAAGAGTACGAC+GGG 0.549601 6_1:+50299721 Msa0887720:three_prime_UTR
GATACTGAAGGTGAACAACT+TGG 0.550229 6_1:+50298203 Msa0887720:CDS
TCTGGTATCAAACAAATCAA+AGG 0.550635 6_1:-50299172 None:intergenic
ATGGCATTATGGAGGAATTG+AGG 0.551184 6_1:+50300051 Msa0887720:three_prime_UTR
AACCAAACACCTTTGCTGGA+AGG 0.560553 6_1:+50300171 Msa0887720:three_prime_UTR
CGATCGAGTTTCTTCAATGG+CGG 0.562456 6_1:+50296692 Msa0887720:exon
CGAGGAAGTTGATGAGGACA+AGG 0.563541 6_1:+50298918 Msa0887720:three_prime_UTR
ATGATTGGTCAATTTGGTGT+TGG 0.565654 6_1:+50298068 Msa0887720:CDS
CATAAAGCTTTATGTTAGGA+GGG 0.567280 6_1:+50299209 Msa0887720:three_prime_UTR
GAAGCTGGTTAATCTCAGCT+TGG 0.568399 6_1:-50296734 None:intergenic
CCTCCATAATGCCATTATCA+GGG 0.570809 6_1:-50300043 None:intergenic
GTGGAGGTGACCATGTCACT+AGG 0.573102 6_1:+50300539 Msa0887720:three_prime_UTR
CAGTAGTCTTCTCGGTCCAA+AGG 0.574286 6_1:-50298837 None:intergenic
GAGCTCATACCGGAATACCT+TGG 0.577019 6_1:+50299255 Msa0887720:three_prime_UTR
GGCTCTGAGGGACAGCAGCA+TGG 0.577027 6_1:+50299983 Msa0887720:three_prime_UTR
CAACTGCGAGGAGCTCATAC+CGG 0.577287 6_1:+50299245 Msa0887720:three_prime_UTR
GAATACCTTGGATTCGTGAA+AGG 0.577628 6_1:+50299267 Msa0887720:three_prime_UTR
TGGTGACCGGCGAATACGGA+TGG 0.582292 6_1:+50299928 Msa0887720:three_prime_UTR
TATGTCACCAGAATGAAAGA+AGG 0.583254 6_1:+50299567 Msa0887720:three_prime_UTR
TTAAGGAGGTTTCTCATGAG+TGG 0.586380 6_1:+50298968 Msa0887720:three_prime_UTR
CAACACCTTTCACGAATCCA+AGG 0.590596 6_1:-50299272 None:intergenic
TGATGATCAAGCTAAGAAGC+TGG 0.590904 6_1:-50296749 None:intergenic
GAGCCCAAGAAGGAAGAAGA+AGG 0.591409 6_1:+50298889 Msa0887720:three_prime_UTR
GCTATCGATGAGTATGCTGT+TGG 0.592094 6_1:+50299699 Msa0887720:three_prime_UTR
CCTATGAATCCTTCCAGCAA+AGG 0.593754 6_1:-50300180 None:intergenic
CAGAATGAAAGAAGGGCAGA+AGG 0.594937 6_1:+50299575 Msa0887720:three_prime_UTR
TGGAGGCATATCAACATCAT+CGG 0.595401 6_1:-50300246 None:intergenic
TCTTGGAGAGACTGAAGAAG+AGG 0.595964 6_1:+50299649 Msa0887720:three_prime_UTR
TACGTTTGGAAATCACAAGC+TGG 0.601760 6_1:+50298158 Msa0887720:CDS
AGTATCTCTTGTAACAGTGA+AGG 0.603086 6_1:-50298186 None:intergenic
TAAGAATGATAAGTCAGTGA+AGG 0.606326 6_1:+50300091 Msa0887720:three_prime_UTR
ATCCTTTGAGGATCTCTGCA+GGG 0.610202 6_1:+50299830 Msa0887720:three_prime_UTR
TCATGAAGGCTCAGGCTCTG+AGG 0.610845 6_1:+50299970 Msa0887720:three_prime_UTR
TCGCCGGTCACCAAACAGCA+TGG 0.612361 6_1:-50299918 None:intergenic
AGCAGTCCATCCGTATTCGC+CGG 0.613705 6_1:-50299934 None:intergenic
ATGCCTCCATTGGAAGAAGA+TGG 0.616046 6_1:+50300260 Msa0887720:three_prime_UTR
CAAGAGCCTAACCAATGACT+GGG 0.619606 6_1:+50299068 Msa0887720:three_prime_UTR
AACCCTGCAGAGATCCTCAA+AGG 0.620639 6_1:-50299832 None:intergenic
ATCTCACGAGAGATGTTAAG+CGG 0.621516 6_1:-50299312 None:intergenic
CCCTGATAATGGCATTATGG+AGG 0.621969 6_1:+50300043 Msa0887720:three_prime_UTR
GCACCATCTTCTTCCAATGG+AGG 0.624744 6_1:-50300263 None:intergenic
ATGTCACCAGAATGAAAGAA+GGG 0.627317 6_1:+50299568 Msa0887720:three_prime_UTR
ATTGGAAGAAGATGGTGCTG+AGG 0.630811 6_1:+50300268 Msa0887720:three_prime_UTR
CAAGAAGGAAGAAGAAGGTG+TGG 0.636436 6_1:+50298894 Msa0887720:three_prime_UTR
TGCTGAGGAGAGCAAGATGG+AGG 0.636599 6_1:+50300283 Msa0887720:three_prime_UTR
TGAAGATGATGAGCCCAAGA+AGG 0.641724 6_1:+50298879 Msa0887720:three_prime_UTR
TGTGGTCGAGGAAGTTGATG+AGG 0.643052 6_1:+50298912 Msa0887720:three_prime_UTR
GAAGGTGAACAACTTGGTAG+GGG 0.643370 6_1:+50298209 Msa0887720:CDS
TTATTGTTAGCCTAGTGACA+TGG 0.649673 6_1:-50300549 None:intergenic
TAACATGGAGAGAATCATGA+AGG 0.650550 6_1:+50299956 Msa0887720:three_prime_UTR
CAATACTTTCTATAGCAACA+AGG 0.652080 6_1:+50296770 Msa0887720:CDS
AGGTACCATTCTACCAAGAG+TGG 0.654561 6_1:+50299519 Msa0887720:three_prime_UTR
ACTGTTACAAGAGATACTGA+AGG 0.656468 6_1:+50298191 Msa0887720:CDS
ACAATTTGGGTACTATTGCG+AGG 0.656937 6_1:+50297994 Msa0887720:CDS
ATTGGGTCTTAGCATTGATG+AGG 0.659301 6_1:+50300211 Msa0887720:three_prime_UTR
TCATGAAGATAGCCAGAACA+GGG 0.671210 6_1:+50299476 Msa0887720:three_prime_UTR
AACGTAACCTGACTTTGTGG+AGG 0.672507 6_1:+50300523 Msa0887720:three_prime_UTR
ACTCTTTCCATCATTGACAG+TGG 0.673727 6_1:+50297519 Msa0887720:CDS
GAAGCTGGATGATGAAACTG+AGG 0.675040 6_1:+50299776 Msa0887720:three_prime_UTR
TTGGAGAGACTGAAGAAGAG+GGG 0.684554 6_1:+50299651 Msa0887720:three_prime_UTR
GTTTGGAAATCACAAGCTGG+TGG 0.692731 6_1:+50298161 Msa0887720:CDS
GCTGGATGATGAAACTGAGG+AGG 0.701189 6_1:+50299779 Msa0887720:three_prime_UTR
GGACAACTGAAAGAGTACGA+CGG 0.721123 6_1:+50299720 Msa0887720:three_prime_UTR
GTTCATCATGGACAACTGCG+AGG 0.727487 6_1:+50299233 Msa0887720:three_prime_UTR
TGGAACCAAGGAGTTCATGG+AGG 0.751607 6_1:+50298019 Msa0887720:CDS
TAAGCCAGAAGAGATCACCA+AGG 0.797818 6_1:+50299026 Msa0887720:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTAATTATACGATTTTT+TGG + chr6_1:50298523-50298542 Msa0887720:three_prime_UTR 10.0%
!!! ATGAAGTTTATTTTACTAAA+CGG + chr6_1:50297373-50297392 Msa0887720:intron 15.0%
!!! TGTAAATTTTGTTAAGATTA+TGG + chr6_1:50297665-50297684 Msa0887720:intron 15.0%
!! AAATCGTATAATTAATATAC+TGG - chr6_1:50298521-50298540 None:intergenic 15.0%
!!! TAATTTTGTTTTTTGAAGTA+TGG + chr6_1:50300647-50300666 Msa0887720:three_prime_UTR 15.0%
!!! TAAAATTGTTTTTATGTCAG+TGG + chr6_1:50296947-50296966 Msa0887720:intron 20.0%
!! TCAACTAAAATTAACTTCAT+AGG - chr6_1:50296977-50296996 None:intergenic 20.0%
!!! AGTTTTTCAATTACATAACA+AGG - chr6_1:50298318-50298337 None:intergenic 20.0%
!!! TTTCTCAAAGAATTTGAAAT+TGG + chr6_1:50299449-50299468 Msa0887720:three_prime_UTR 20.0%
!!! TTCTCAAAGAATTTGAAATT+GGG + chr6_1:50299450-50299469 Msa0887720:three_prime_UTR 20.0%
!! TATAGATTGGAATGTTAATA+TGG + chr6_1:50300322-50300341 Msa0887720:three_prime_UTR 20.0%
!!! AGCATAAGTTTTGATTATGA+AGG + chr6_1:50297325-50297344 Msa0887720:intron 25.0%
!! ATTTTACTAAACGGTGTTTT+TGG + chr6_1:50297382-50297401 Msa0887720:intron 25.0%
! ATCAAACTTCAGAAACAAAA+TGG - chr6_1:50297579-50297598 None:intergenic 25.0%
! AGTTTGATACATGTTTGAAT+TGG + chr6_1:50297591-50297610 Msa0887720:intron 25.0%
! TAACAGAATTACAATTAACG+AGG - chr6_1:50297863-50297882 None:intergenic 25.0%
! TGTAATTCTGTTAAAACTAC+CGG + chr6_1:50297870-50297889 Msa0887720:intron 25.0%
!! AATTTCTGAATGTTCTGTTT+TGG + chr6_1:50297949-50297968 Msa0887720:intron 25.0%
!! ATTTCTGAATGTTCTGTTTT+GGG + chr6_1:50297950-50297969 Msa0887720:intron 25.0%
!!! TTTAGATTTGGTGAACAATT+TGG + chr6_1:50297980-50297999 Msa0887720:intron 25.0%
!!! TTAGATTTGGTGAACAATTT+GGG + chr6_1:50297981-50298000 Msa0887720:intron 25.0%
! CTAAACTTTGCTAAAACTAT+TGG + chr6_1:50298279-50298298 Msa0887720:exon 25.0%
!!! ATGTTATGCTTTAGTTTTGT+TGG + chr6_1:50298385-50298404 Msa0887720:three_prime_UTR 25.0%
! TGTAACTCAGAGATTAAATT+AGG + chr6_1:50298645-50298664 Msa0887720:three_prime_UTR 25.0%
! GTAACTCAGAGATTAAATTA+GGG + chr6_1:50298646-50298665 Msa0887720:three_prime_UTR 25.0%
!! TGATTCATTTTATGACCATT+TGG + chr6_1:50298744-50298763 Msa0887720:three_prime_UTR 25.0%
!! TTATGACCATTTGGAATATT+TGG + chr6_1:50298753-50298772 Msa0887720:three_prime_UTR 25.0%
!! CTTAATCTTCTTTTTCTTCT+TGG - chr6_1:50298953-50298972 None:intergenic 25.0%
! CAAGAAGAAAAAGAAGATTA+AGG + chr6_1:50298951-50298970 Msa0887720:three_prime_UTR 25.0%
!! ACAACATAAAGCTTTATGTT+AGG + chr6_1:50299205-50299224 Msa0887720:three_prime_UTR 25.0%
! ATTCATAGGATGTTGAAATT+GGG + chr6_1:50300194-50300213 Msa0887720:three_prime_UTR 25.0%
! TTGACTAAAAGCTTATAGAT+TGG + chr6_1:50300309-50300328 Msa0887720:three_prime_UTR 25.0%
!!! ACTTTTTGTCTTGATAGTTA+TGG + chr6_1:50300371-50300390 Msa0887720:three_prime_UTR 25.0%
!!! CTTTTTGTCTTGATAGTTAT+GGG + chr6_1:50300372-50300391 Msa0887720:three_prime_UTR 25.0%
!! TTCATTGATGACATGATAAT+AGG - chr6_1:50300432-50300451 None:intergenic 25.0%
!!! TTTTGTTTTTTGAAGTATGG+TGG + chr6_1:50300650-50300669 Msa0887720:three_prime_UTR 25.0%
!!! TTTGTTTTTTGAAGTATGGT+GGG + chr6_1:50300651-50300670 Msa0887720:three_prime_UTR 25.0%
CAATACTTTCTATAGCAACA+AGG + chr6_1:50296770-50296789 Msa0887720:CDS 30.0%
! TTTTTGGATGTGGTTTTTGA+AGG + chr6_1:50297398-50297417 Msa0887720:intron 30.0%
CTAAACGTTCAAGAAAATCA+CGG - chr6_1:50297645-50297664 None:intergenic 30.0%
ATACATTCAGTGATAAGTGT+TGG - chr6_1:50297708-50297727 None:intergenic 30.0%
GAGCATATGTGTAAATTAAC+CGG - chr6_1:50297892-50297911 None:intergenic 30.0%
AACAGAACATTCAGAAATTC+AGG - chr6_1:50297948-50297967 None:intergenic 30.0%
!! TTGGGTCTATGTTTTAGATT+TGG + chr6_1:50297968-50297987 Msa0887720:intron 30.0%
!! TATTACTTTTGCAACCCATT+AGG + chr6_1:50298339-50298358 Msa0887720:three_prime_UTR 30.0%
!! ATTACTTTTGCAACCCATTA+GGG + chr6_1:50298340-50298359 Msa0887720:three_prime_UTR 30.0%
AGTCTGTAGATGTTTAATGT+TGG + chr6_1:50298422-50298441 Msa0887720:three_prime_UTR 30.0%
TCTCTTCCAAATATTCCAAA+TGG - chr6_1:50298762-50298781 None:intergenic 30.0%
! ATTTGGAATATTTGGAAGAG+AGG + chr6_1:50298761-50298780 Msa0887720:three_prime_UTR 30.0%
TTAGCTATCCAATTTACCTT+TGG + chr6_1:50298821-50298840 Msa0887720:three_prime_UTR 30.0%
GAAGAAAAAGAAGATTAAGG+AGG + chr6_1:50298954-50298973 Msa0887720:three_prime_UTR 30.0%
CTGGTATCAAACAAATCAAA+GGG - chr6_1:50299174-50299193 None:intergenic 30.0%
TCTGGTATCAAACAAATCAA+AGG - chr6_1:50299175-50299194 None:intergenic 30.0%
TATGTTGTTCATCTTCTTTC+TGG - chr6_1:50299193-50299212 None:intergenic 30.0%
! ACATAAAGCTTTATGTTAGG+AGG + chr6_1:50299208-50299227 Msa0887720:three_prime_UTR 30.0%
! CATAAAGCTTTATGTTAGGA+GGG + chr6_1:50299209-50299228 Msa0887720:three_prime_UTR 30.0%
!! CACTGACTTATCATTCTTAT+CGG - chr6_1:50300090-50300109 None:intergenic 30.0%
TAAGAATGATAAGTCAGTGA+AGG + chr6_1:50300091-50300110 Msa0887720:three_prime_UTR 30.0%
GATTCATAGGATGTTGAAAT+TGG + chr6_1:50300193-50300212 Msa0887720:three_prime_UTR 30.0%
TTTCATCACATTACGATAGA+TGG - chr6_1:50300604-50300623 None:intergenic 30.0%
TGTGATGAAACTCACAAATA+CGG + chr6_1:50300614-50300633 Msa0887720:three_prime_UTR 30.0%
!! TGAAGGCTTTGGACAAAATT+CGG + chr6_1:50297415-50297434 Msa0887720:intron 35.0%
ACTGATAAGAGTAAGCTTGA+TGG + chr6_1:50297450-50297469 Msa0887720:CDS 35.0%
ATAAGCCTAATGAAAAGCTC+TGG - chr6_1:50297480-50297499 None:intergenic 35.0%
!! AATGATGGAAAGAGTGTTGT+TGG - chr6_1:50297514-50297533 None:intergenic 35.0%
AATCATGAGATTACCTGCTT+TGG - chr6_1:50297556-50297575 None:intergenic 35.0%
CTTATCACTGAATGTATGTC+TGG + chr6_1:50297711-50297730 Msa0887720:intron 35.0%
!! ATGATTGGTCAATTTGGTGT+TGG + chr6_1:50298068-50298087 Msa0887720:CDS 35.0%
! ATGATGATGAGCAATACGTT+TGG + chr6_1:50298144-50298163 Msa0887720:CDS 35.0%
AGTATCTCTTGTAACAGTGA+AGG - chr6_1:50298189-50298208 None:intergenic 35.0%
ACTGTTACAAGAGATACTGA+AGG + chr6_1:50298191-50298210 Msa0887720:CDS 35.0%
TTTGAGGAAAAGAGTGATCT+TGG - chr6_1:50298237-50298256 None:intergenic 35.0%
GCTCTATGATTTCTGTAACT+TGG + chr6_1:50298561-50298580 Msa0887720:three_prime_UTR 35.0%
! GAACATGAGTGAGAATTTTC+TGG + chr6_1:50298598-50298617 Msa0887720:three_prime_UTR 35.0%
TTTGGAAGAGAGGAGAATTA+AGG + chr6_1:50298771-50298790 Msa0887720:three_prime_UTR 35.0%
! TCTTTTCGGAACAAAGAGAA+TGG - chr6_1:50299148-50299167 None:intergenic 35.0%
!!! AAATCAAAGGGTGCTCTTTT+CGG - chr6_1:50299162-50299181 None:intergenic 35.0%
ACAAGATCTTGAAGGTGATT+AGG + chr6_1:50299346-50299365 Msa0887720:three_prime_UTR 35.0%
!! CTAAACTTGCTGATTTGCTT+AGG + chr6_1:50299499-50299518 Msa0887720:three_prime_UTR 35.0%
!! TGATGAAATGACTAGCTTGA+AGG + chr6_1:50299542-50299561 Msa0887720:three_prime_UTR 35.0%
TATGTCACCAGAATGAAAGA+AGG + chr6_1:50299567-50299586 Msa0887720:three_prime_UTR 35.0%
ATGTCACCAGAATGAAAGAA+GGG + chr6_1:50299568-50299587 Msa0887720:three_prime_UTR 35.0%
AAGGACATTTACTACATCAC+TGG + chr6_1:50299594-50299613 Msa0887720:three_prime_UTR 35.0%
! GAAATTGGTTTCAGCTACAA+AGG + chr6_1:50299746-50299765 Msa0887720:three_prime_UTR 35.0%
AGGGTTATGAAGGAAATCTT+GGG + chr6_1:50299849-50299868 Msa0887720:three_prime_UTR 35.0%
TAACATGGAGAGAATCATGA+AGG + chr6_1:50299956-50299975 Msa0887720:three_prime_UTR 35.0%
CATGTCTAGCAAGAAAACTA+TGG + chr6_1:50300013-50300032 Msa0887720:three_prime_UTR 35.0%
ATGGAAATCAACCCTGATAA+TGG + chr6_1:50300032-50300051 Msa0887720:three_prime_UTR 35.0%
! TTTCAAAAAGCAGAAGCACA+AGG - chr6_1:50300118-50300137 None:intergenic 35.0%
! TCTTGATAGTTATGGGTGTT+GGG + chr6_1:50300379-50300398 Msa0887720:three_prime_UTR 35.0%
!! TTGGGTTTTTGGATTTGTCT+TGG + chr6_1:50300397-50300416 Msa0887720:three_prime_UTR 35.0%
! ACAAAGTCAGGTTACGTTTT+AGG - chr6_1:50300521-50300540 None:intergenic 35.0%
TAAAACGTAACCTGACTTTG+TGG + chr6_1:50300520-50300539 Msa0887720:three_prime_UTR 35.0%
! TTATTGTTAGCCTAGTGACA+TGG - chr6_1:50300552-50300571 None:intergenic 35.0%
!!! TAGATGGTTTTGTGGTTTAG+AGG - chr6_1:50300588-50300607 None:intergenic 35.0%
!! CATTACGATAGATGGTTTTG+TGG - chr6_1:50300596-50300615 None:intergenic 35.0%
TCTCGATCGAGTTTCTTCAA+TGG + chr6_1:50296689-50296708 Msa0887720:exon 40.0%
TGATGATCAAGCTAAGAAGC+TGG - chr6_1:50296752-50296771 None:intergenic 40.0%
!!! CTAAACGGTGTTTTTGGATG+TGG + chr6_1:50297388-50297407 Msa0887720:intron 40.0%
!! GATGTGGTTTTTGAAGGCTT+TGG + chr6_1:50297404-50297423 Msa0887720:intron 40.0%
! GACAACCAGAGCTTTTCATT+AGG + chr6_1:50297472-50297491 Msa0887720:CDS 40.0%
ACTCTTTCCATCATTGACAG+TGG + chr6_1:50297519-50297538 Msa0887720:CDS 40.0%
TCAATGTCAACATACCAGTG+TGG + chr6_1:50297804-50297823 Msa0887720:intron 40.0%
ACAATTTGGGTACTATTGCG+AGG + chr6_1:50297994-50298013 Msa0887720:CDS 40.0%
! GTGAGCATGATTGGTCAATT+TGG + chr6_1:50298062-50298081 Msa0887720:CDS 40.0%
TGGATTCTACTCTGCTTATC+TGG + chr6_1:50298088-50298107 Msa0887720:CDS 40.0%
TTGCTCATCATCATTGTGCT+TGG - chr6_1:50298138-50298157 None:intergenic 40.0%
TACGTTTGGAAATCACAAGC+TGG + chr6_1:50298158-50298177 Msa0887720:CDS 40.0%
GATACTGAAGGTGAACAACT+TGG + chr6_1:50298203-50298222 Msa0887720:CDS 40.0%
TGAAGGTGAACAACTTGGTA+GGG + chr6_1:50298208-50298227 Msa0887720:CDS 40.0%
! GATCACTCTTTTCCTCAAAG+AGG + chr6_1:50298238-50298257 Msa0887720:CDS 40.0%
! TCTTTTCCTCAAAGAGGATC+AGG + chr6_1:50298244-50298263 Msa0887720:CDS 40.0%
AAACTACCTGATCCTCTTTG+AGG - chr6_1:50298253-50298272 None:intergenic 40.0%
CTCTACAAAACGTCCCTAAT+GGG - chr6_1:50298356-50298375 None:intergenic 40.0%
TCTCTACAAAACGTCCCTAA+TGG - chr6_1:50298357-50298376 None:intergenic 40.0%
TTCTCGGTCCAAAGGTAAAT+TGG - chr6_1:50298832-50298851 None:intergenic 40.0%
CTCTTTCTCAGTAGTCTTCT+CGG - chr6_1:50298848-50298867 None:intergenic 40.0%
ACACCTTCTTCTTCCTTCTT+GGG - chr6_1:50298895-50298914 None:intergenic 40.0%
TTAAGGAGGTTTCTCATGAG+TGG + chr6_1:50298968-50298987 Msa0887720:three_prime_UTR 40.0%
TAAGGAGGTTTCTCATGAGT+GGG + chr6_1:50298969-50298988 Msa0887720:three_prime_UTR 40.0%
TCAACAAGCAGAAACCAATC+TGG + chr6_1:50298998-50299017 Msa0887720:three_prime_UTR 40.0%
GAAAGCAGCATATTCATCCT+TGG - chr6_1:50299046-50299065 None:intergenic 40.0%
! TGTGAAGCATTTCTCTGTTG+AGG + chr6_1:50299104-50299123 Msa0887720:three_prime_UTR 40.0%
! GTGAAGCATTTCTCTGTTGA+GGG + chr6_1:50299105-50299124 Msa0887720:three_prime_UTR 40.0%
! TTCACGAATCCAAGGTATTC+CGG - chr6_1:50299267-50299286 None:intergenic 40.0%
GAATACCTTGGATTCGTGAA+AGG + chr6_1:50299267-50299286 Msa0887720:three_prime_UTR 40.0%
ATCTCACGAGAGATGTTAAG+CGG - chr6_1:50299315-50299334 None:intergenic 40.0%
GCAACAGAACAAGATCTTGA+AGG + chr6_1:50299338-50299357 Msa0887720:three_prime_UTR 40.0%
TTCATGAAGATAGCCAGAAC+AGG + chr6_1:50299475-50299494 Msa0887720:three_prime_UTR 40.0%
TCATGAAGATAGCCAGAACA+GGG + chr6_1:50299476-50299495 Msa0887720:three_prime_UTR 40.0%
AGTCATTTCATCACCACTCT+TGG - chr6_1:50299535-50299554 None:intergenic 40.0%
TGTGGAAAACTCTCCATTCT+TGG + chr6_1:50299632-50299651 Msa0887720:three_prime_UTR 40.0%
TTCTTCAGTCTCTCCAAGAA+TGG - chr6_1:50299648-50299667 None:intergenic 40.0%
TTGGTTTCAGCTACAAAGGA+AGG + chr6_1:50299750-50299769 Msa0887720:three_prime_UTR 40.0%
GGAGGAGAAGAAGAAAAAAG+AGG + chr6_1:50299797-50299816 Msa0887720:three_prime_UTR 40.0%
GGAGAAGAAGAAATCCTTTG+AGG + chr6_1:50299818-50299837 Msa0887720:three_prime_UTR 40.0%
CAGGGTTATGAAGGAAATCT+TGG + chr6_1:50299848-50299867 Msa0887720:three_prime_UTR 40.0%
GGAAATCTTGGGAGATAAAG+TGG + chr6_1:50299860-50299879 Msa0887720:three_prime_UTR 40.0%
AGAAGGTAGTTGTCTCTGAT+AGG + chr6_1:50299883-50299902 Msa0887720:three_prime_UTR 40.0%
!! TGTTGATTCTCCATGCTGTT+TGG + chr6_1:50299908-50299927 Msa0887720:three_prime_UTR 40.0%
!! CAACCCTGATAATGGCATTA+TGG + chr6_1:50300040-50300059 Msa0887720:three_prime_UTR 40.0%
CCTCCATAATGCCATTATCA+GGG - chr6_1:50300046-50300065 None:intergenic 40.0%
TCCTCCATAATGCCATTATC+AGG - chr6_1:50300047-50300066 None:intergenic 40.0%
ATGGCATTATGGAGGAATTG+AGG + chr6_1:50300051-50300070 Msa0887720:three_prime_UTR 40.0%
TTATGGAGGAATTGAGGAAG+AGG + chr6_1:50300057-50300076 Msa0887720:three_prime_UTR 40.0%
!!! GAAACTGCTCTTTTGACTTC+TGG + chr6_1:50300134-50300153 Msa0887720:three_prime_UTR 40.0%
!! CAAAGGTGTTTGGTTCATCA+AGG - chr6_1:50300166-50300185 None:intergenic 40.0%
!! ATTGGGTCTTAGCATTGATG+AGG + chr6_1:50300211-50300230 Msa0887720:three_prime_UTR 40.0%
!! AGCATTGATGAGGATGAATC+TGG + chr6_1:50300221-50300240 Msa0887720:three_prime_UTR 40.0%
! TGGAGGCATATCAACATCAT+CGG - chr6_1:50300249-50300268 None:intergenic 40.0%
TGATGTTGATATGCCTCCAT+TGG + chr6_1:50300250-50300269 Msa0887720:three_prime_UTR 40.0%
! GTCTTGATAGTTATGGGTGT+TGG + chr6_1:50300378-50300397 Msa0887720:three_prime_UTR 40.0%
!!! AGTTATGGGTGTTGGGTTTT+TGG + chr6_1:50300386-50300405 Msa0887720:three_prime_UTR 40.0%
!!! TTTTGAAGTATGGTGGGTGA+TGG + chr6_1:50300657-50300676 Msa0887720:three_prime_UTR 40.0%
CGATCGAGTTTCTTCAATGG+CGG + chr6_1:50296692-50296711 Msa0887720:exon 45.0%
GAAGCTGGTTAATCTCAGCT+TGG - chr6_1:50296737-50296756 None:intergenic 45.0%
!! AGAGTGTTGTTGGCTTTGTC+AGG - chr6_1:50297504-50297523 None:intergenic 45.0%
TCCATCATTGACAGTGGCAT+TGG + chr6_1:50297525-50297544 Msa0887720:CDS 45.0%
TCCAATGCCACTGTCAATGA+TGG - chr6_1:50297529-50297548 None:intergenic 45.0%
TCACCACCATTGTTCAGTGT+CGG - chr6_1:50297740-50297759 None:intergenic 45.0%
ATACCAGTGTGGTGCTTCAT+AGG + chr6_1:50297815-50297834 Msa0887720:intron 45.0%
CTCATCATCATTGTGCTTGG+TGG - chr6_1:50298135-50298154 None:intergenic 45.0%
GTTTGGAAATCACAAGCTGG+TGG + chr6_1:50298161-50298180 Msa0887720:CDS 45.0%
CTGAAGGTGAACAACTTGGT+AGG + chr6_1:50298207-50298226 Msa0887720:CDS 45.0%
GAAGGTGAACAACTTGGTAG+GGG + chr6_1:50298209-50298228 Msa0887720:CDS 45.0%
TGAAGATGATGAGCCCAAGA+AGG + chr6_1:50298879-50298898 Msa0887720:three_prime_UTR 45.0%
CACACCTTCTTCTTCCTTCT+TGG - chr6_1:50298896-50298915 None:intergenic 45.0%
CAAGAAGGAAGAAGAAGGTG+TGG + chr6_1:50298894-50298913 Msa0887720:three_prime_UTR 45.0%
TAAGCCAGAAGAGATCACCA+AGG + chr6_1:50299026-50299045 Msa0887720:three_prime_UTR 45.0%
! TCATCCTTGGTGATCTCTTC+TGG - chr6_1:50299033-50299052 None:intergenic 45.0%
ACAAGAGCCTAACCAATGAC+TGG + chr6_1:50299067-50299086 Msa0887720:three_prime_UTR 45.0%
CAAGAGCCTAACCAATGACT+GGG + chr6_1:50299068-50299087 Msa0887720:three_prime_UTR 45.0%
!! TGTTAGGAGGGTGTTCATCA+TGG + chr6_1:50299221-50299240 Msa0887720:three_prime_UTR 45.0%
CAACACCTTTCACGAATCCA+AGG - chr6_1:50299275-50299294 None:intergenic 45.0%
CAATGAGATCGCTGAGAACA+AGG + chr6_1:50299401-50299420 Msa0887720:three_prime_UTR 45.0%
AGGTACCATTCTACCAAGAG+TGG + chr6_1:50299519-50299538 Msa0887720:three_prime_UTR 45.0%
CATCACCACTCTTGGTAGAA+TGG - chr6_1:50299527-50299546 None:intergenic 45.0%
CTTCTGCCCTTCTTTCATTC+TGG - chr6_1:50299577-50299596 None:intergenic 45.0%
CAGAATGAAAGAAGGGCAGA+AGG + chr6_1:50299575-50299594 Msa0887720:three_prime_UTR 45.0%
CATCACTGGAGAGAGCAAAA+AGG + chr6_1:50299608-50299627 Msa0887720:three_prime_UTR 45.0%
TCTTGGAGAGACTGAAGAAG+AGG + chr6_1:50299649-50299668 Msa0887720:three_prime_UTR 45.0%
CTTGGAGAGACTGAAGAAGA+GGG + chr6_1:50299650-50299669 Msa0887720:three_prime_UTR 45.0%
TTGGAGAGACTGAAGAAGAG+GGG + chr6_1:50299651-50299670 Msa0887720:three_prime_UTR 45.0%
GGGCTATGAAGTTCTCTTCA+TGG + chr6_1:50299671-50299690 Msa0887720:three_prime_UTR 45.0%
GCTATCGATGAGTATGCTGT+TGG + chr6_1:50299699-50299718 Msa0887720:three_prime_UTR 45.0%
! GGACAACTGAAAGAGTACGA+CGG + chr6_1:50299720-50299739 Msa0887720:three_prime_UTR 45.0%
! GACAACTGAAAGAGTACGAC+GGG + chr6_1:50299721-50299740 Msa0887720:three_prime_UTR 45.0%
AGAGTACGACGGGAAGAAAT+TGG + chr6_1:50299731-50299750 Msa0887720:three_prime_UTR 45.0%
TACAAAGGAAGGACTGAAGC+TGG + chr6_1:50299761-50299780 Msa0887720:three_prime_UTR 45.0%
GAAGCTGGATGATGAAACTG+AGG + chr6_1:50299776-50299795 Msa0887720:three_prime_UTR 45.0%
! AATCCTTTGAGGATCTCTGC+AGG + chr6_1:50299829-50299848 Msa0887720:three_prime_UTR 45.0%
! ATCCTTTGAGGATCTCTGCA+GGG + chr6_1:50299830-50299849 Msa0887720:three_prime_UTR 45.0%
CTTGGGAGATAAAGTGGAGA+AGG + chr6_1:50299866-50299885 Msa0887720:three_prime_UTR 45.0%
!! ATACGGATGGACTGCTAACA+TGG + chr6_1:50299941-50299960 Msa0887720:three_prime_UTR 45.0%
!! CCCTGATAATGGCATTATGG+AGG + chr6_1:50300043-50300062 Msa0887720:three_prime_UTR 45.0%
GATGAACCAAACACCTTTGC+TGG + chr6_1:50300167-50300186 Msa0887720:three_prime_UTR 45.0%
AACCAAACACCTTTGCTGGA+AGG + chr6_1:50300171-50300190 Msa0887720:three_prime_UTR 45.0%
!! ATCCTTCCAGCAAAGGTGTT+TGG - chr6_1:50300176-50300195 None:intergenic 45.0%
CCTATGAATCCTTCCAGCAA+AGG - chr6_1:50300183-50300202 None:intergenic 45.0%
CCTTTGCTGGAAGGATTCAT+AGG + chr6_1:50300180-50300199 Msa0887720:three_prime_UTR 45.0%
ATGCCTCCATTGGAAGAAGA+TGG + chr6_1:50300260-50300279 Msa0887720:three_prime_UTR 45.0%
TCAGCACCATCTTCTTCCAA+TGG - chr6_1:50300269-50300288 None:intergenic 45.0%
! ATTGGAAGAAGATGGTGCTG+AGG + chr6_1:50300268-50300287 Msa0887720:three_prime_UTR 45.0%
AACGTAACCTGACTTTGTGG+AGG + chr6_1:50300523-50300542 Msa0887720:three_prime_UTR 45.0%
! GGCATTGGAATGACCAAAGC+AGG + chr6_1:50297540-50297559 Msa0887720:CDS 50.0%
TGGTGTCCGACACTGAACAA+TGG + chr6_1:50297731-50297750 Msa0887720:intron 50.0%
TGTCCGACACTGAACAATGG+TGG + chr6_1:50297734-50297753 Msa0887720:intron 50.0%
TTGGGTACTATTGCGAGGTC+TGG + chr6_1:50297999-50298018 Msa0887720:CDS 50.0%
! TATTGCGAGGTCTGGAACCA+AGG + chr6_1:50298007-50298026 Msa0887720:CDS 50.0%
! GTCTGGAACCAAGGAGTTCA+TGG + chr6_1:50298016-50298035 Msa0887720:CDS 50.0%
TGGAACCAAGGAGTTCATGG+AGG + chr6_1:50298019-50298038 Msa0887720:CDS 50.0%
CAATGCCTCCATGAACTCCT+TGG - chr6_1:50298027-50298046 None:intergenic 50.0%
!! TTCATGGAGGCATTGCAAGC+TGG + chr6_1:50298032-50298051 Msa0887720:CDS 50.0%
!! GGTGCTGATGTGAGCATGAT+TGG + chr6_1:50298053-50298072 Msa0887720:CDS 50.0%
CAGTAGTCTTCTCGGTCCAA+AGG - chr6_1:50298840-50298859 None:intergenic 50.0%
GAGCCCAAGAAGGAAGAAGA+AGG + chr6_1:50298889-50298908 Msa0887720:three_prime_UTR 50.0%
!! TGTGGTCGAGGAAGTTGATG+AGG + chr6_1:50298912-50298931 Msa0887720:three_prime_UTR 50.0%
!! CGAGGAAGTTGATGAGGACA+AGG + chr6_1:50298918-50298937 Msa0887720:three_prime_UTR 50.0%
! GCTCTTCCCAGTCATTGGTT+AGG - chr6_1:50299077-50299096 None:intergenic 50.0%
CAAGTGCTCTTCCCAGTCAT+TGG - chr6_1:50299082-50299101 None:intergenic 50.0%
!! CAATGACTGGGAAGAGCACT+TGG + chr6_1:50299080-50299099 Msa0887720:three_prime_UTR 50.0%
GTTCATCATGGACAACTGCG+AGG + chr6_1:50299233-50299252 Msa0887720:three_prime_UTR 50.0%
GAGCTCATACCGGAATACCT+TGG + chr6_1:50299255-50299274 Msa0887720:three_prime_UTR 50.0%
CAGCAAGTTTAGCCCTGTTC+TGG - chr6_1:50299491-50299510 None:intergenic 50.0%
TGGAGAGAGCAAAAAGGCTG+TGG + chr6_1:50299614-50299633 Msa0887720:three_prime_UTR 50.0%
GCTGGATGATGAAACTGAGG+AGG + chr6_1:50299779-50299798 Msa0887720:three_prime_UTR 50.0%
AACCCTGCAGAGATCCTCAA+AGG - chr6_1:50299835-50299854 None:intergenic 50.0%
GGATCTCTGCAGGGTTATGA+AGG + chr6_1:50299839-50299858 Msa0887720:three_prime_UTR 50.0%
! TCTCCATGCTGTTTGGTGAC+CGG + chr6_1:50299915-50299934 Msa0887720:three_prime_UTR 50.0%
! TGTTTGGTGACCGGCGAATA+CGG + chr6_1:50299924-50299943 Msa0887720:three_prime_UTR 50.0%
GGAGAGAATCATGAAGGCTC+AGG + chr6_1:50299962-50299981 Msa0887720:three_prime_UTR 50.0%
GCACCATCTTCTTCCAATGG+AGG - chr6_1:50300266-50300285 None:intergenic 50.0%
ATGGTCACCTCCACAAAGTC+AGG - chr6_1:50300533-50300552 None:intergenic 50.0%
!! GAAGTATGGTGGGTGATGGT+AGG + chr6_1:50300661-50300680 Msa0887720:three_prime_UTR 50.0%
! CCACCTATGAAGCACCACAC+TGG - chr6_1:50297821-50297840 None:intergenic 55.0%
CCAGTGTGGTGCTTCATAGG+TGG + chr6_1:50297818-50297837 Msa0887720:intron 55.0%
! GGAAGAAGAAGGTGTGGTCG+AGG + chr6_1:50298900-50298919 Msa0887720:three_prime_UTR 55.0%
! TCTGGCTTACGCAGCCAGAT+TGG - chr6_1:50299015-50299034 None:intergenic 55.0%
CAACTGCGAGGAGCTCATAC+CGG + chr6_1:50299245-50299264 Msa0887720:three_prime_UTR 55.0%
AGCAGTCCATCCGTATTCGC+CGG - chr6_1:50299937-50299956 None:intergenic 55.0%
TCATGAAGGCTCAGGCTCTG+AGG + chr6_1:50299970-50299989 Msa0887720:three_prime_UTR 55.0%
! CATGAAGGCTCAGGCTCTGA+GGG + chr6_1:50299971-50299990 Msa0887720:three_prime_UTR 55.0%
! TGGTGCTGAGGAGAGCAAGA+TGG + chr6_1:50300280-50300299 Msa0887720:three_prime_UTR 55.0%
TGCTGAGGAGAGCAAGATGG+AGG + chr6_1:50300283-50300302 Msa0887720:three_prime_UTR 55.0%
GTGGAGGTGACCATGTCACT+AGG + chr6_1:50300539-50300558 Msa0887720:three_prime_UTR 55.0%
TCGCCGGTCACCAAACAGCA+TGG - chr6_1:50299921-50299940 None:intergenic 60.0%
TGGTGACCGGCGAATACGGA+TGG + chr6_1:50299928-50299947 Msa0887720:three_prime_UTR 60.0%
!! GGCTCTGAGGGACAGCAGCA+TGG + chr6_1:50299983-50300002 Msa0887720:three_prime_UTR 65.0%
CTGAGGGACAGCAGCATGGC+AGG + chr6_1:50299987-50300006 Msa0887720:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 50296547 50300700 50296547 ID=Msa0887720;Name=Msa0887720
chr6_1 mRNA 50296547 50300700 50296547 ID=Msa0887720-mRNA-1;Parent=Msa0887720;Name=Msa0887720-mRNA-1;_AED=0.00;_eAED=0.00;_QI=161|1|1|1|1|1|3|2408|190
chr6_1 exon 50296547 50296830 50296547 ID=Msa0887720-mRNA-1:exon:10324;Parent=Msa0887720-mRNA-1
chr6_1 exon 50297420 50297561 50297420 ID=Msa0887720-mRNA-1:exon:10325;Parent=Msa0887720-mRNA-1
chr6_1 exon 50297985 50300700 50297985 ID=Msa0887720-mRNA-1:exon:10326;Parent=Msa0887720-mRNA-1
chr6_1 five_prime_UTR 50296547 50296707 50296547 ID=Msa0887720-mRNA-1:five_prime_utr;Parent=Msa0887720-mRNA-1
chr6_1 CDS 50296708 50296830 50296708 ID=Msa0887720-mRNA-1:cds;Parent=Msa0887720-mRNA-1
chr6_1 CDS 50297420 50297561 50297420 ID=Msa0887720-mRNA-1:cds;Parent=Msa0887720-mRNA-1
chr6_1 CDS 50297985 50298292 50297985 ID=Msa0887720-mRNA-1:cds;Parent=Msa0887720-mRNA-1
chr6_1 three_prime_UTR 50298293 50300700 50298293 ID=Msa0887720-mRNA-1:three_prime_utr;Parent=Msa0887720-mRNA-1
Gene Sequence

>Msa0887720

ATGGCGGACGCTGAAACATTCGCATTCCAAGCTGAGATTAACCAGCTTCTTAGCTTGATCATCAATACTTTCTATAGCAACAAGGAGATTTTCTTGCGTGAACTTATCAGCAATTCTTCTGATGCTTTGGACAAAATTCGGTTTGAGAGTTTGACTGATAAGAGTAAGCTTGATGGACAACCAGAGCTTTTCATTAGGCTTATTCCTGACAAAGCCAACAACACTCTTTCCATCATTGACAGTGGCATTGGAATGACCAAAGCAGATTTGGTGAACAATTTGGGTACTATTGCGAGGTCTGGAACCAAGGAGTTCATGGAGGCATTGCAAGCTGGTGCTGATGTGAGCATGATTGGTCAATTTGGTGTTGGATTCTACTCTGCTTATCTGGTTGCTGAGAAAGTAATTGTAACCACCAAGCACAATGATGATGAGCAATACGTTTGGAAATCACAAGCTGGTGGCTCCTTCACTGTTACAAGAGATACTGAAGGTGAACAACTTGGTAGGGGAACCAAGATCACTCTTTTCCTCAAAGAGGATCAGGTAGTTTATTTTTCTAAACTTTGCTAA
Protein sequence

>Msa0887720

MADAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDGQPELFIRLIPDKANNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWKSQAGGSFTVTRDTEGEQLGRGTKITLFLKEDQVVYFSKLC*