Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0954620 | A0A072UA78 | 97.917 | 192 | 4 | 0 | 7 | 198 | 1 | 192 | 1.13e-136 | 389 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0088550 | Msa0954620 | 0.808372 | 3.199600e-50 | -8.615850e-47 |
| Msa0135360 | Msa0954620 | 0.805994 | 1.020349e-49 | -8.615850e-47 |
| Msa0190640 | Msa0954620 | 0.838494 | 2.781178e-57 | -8.615850e-47 |
| Msa0211670 | Msa0954620 | 0.832393 | 9.697828e-56 | -8.615850e-47 |
| Msa0213090 | Msa0954620 | 0.804088 | 2.554721e-49 | -8.615850e-47 |
| Msa0232860 | Msa0954620 | 0.815868 | 7.415604e-52 | -8.615850e-47 |
| Msa0232910 | Msa0954620 | 0.823875 | 1.094682e-53 | -8.615850e-47 |
| Msa0330400 | Msa0954620 | 0.800467 | 1.421725e-48 | -8.615850e-47 |
| Msa0916170 | Msa0954620 | 0.897404 | 1.452712e-76 | -8.615850e-47 |
| Msa0916590 | Msa0954620 | 0.919837 | 2.730355e-87 | -8.615850e-47 |
| Msa0954620 | Msa1105270 | 0.800875 | 1.173560e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0954620 | MtrunA17_Chr6g0472041 | 97.917 | 192 | 4 | 0 | 7 | 198 | 1 | 192 | 2.17e-140 | 389 |
| Msa0954620 | MtrunA17_Chr1g0203171 | 72.727 | 198 | 54 | 0 | 1 | 198 | 1 | 198 | 8.15e-108 | 307 |
| Msa0954620 | MtrunA17_Chr7g0241061 | 50.000 | 172 | 82 | 2 | 9 | 177 | 6 | 176 | 2.49e-57 | 178 |
| Msa0954620 | MtrunA17_Chr4g0008141 | 48.276 | 174 | 78 | 1 | 21 | 194 | 18 | 179 | 7.54e-57 | 177 |
| Msa0954620 | MtrunA17_Chr4g0008131 | 50.625 | 160 | 78 | 1 | 10 | 169 | 7 | 165 | 2.29e-54 | 172 |
| Msa0954620 | MtrunA17_Chr4g0008121 | 49.697 | 165 | 71 | 1 | 30 | 194 | 27 | 179 | 1.09e-53 | 170 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0954620 | AT5G52390.1 | 57.143 | 196 | 70 | 6 | 11 | 198 | 6 | 195 | 3.43e-71 | 214 |
| Msa0954620 | AT3G54040.1 | 50.000 | 162 | 74 | 3 | 28 | 189 | 26 | 180 | 4.22e-52 | 166 |
| Msa0954620 | AT3G54040.2 | 50.000 | 162 | 74 | 3 | 28 | 189 | 82 | 236 | 2.06e-51 | 166 |
Find 63 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGACTATGCCAACTTTA+TGG | 0.143672 | 6_3:+55760662 | None:intergenic |
| TAACATTAGCATGAGAAATT+TGG | 0.213364 | 6_3:-55760573 | Msa0954620:CDS |
| TGTCCAGTTTATTTATAATA+AGG | 0.260406 | 6_3:-55757855 | Msa0954620:three_prime_UTR |
| ACAAATAATATATAGGGTTT+TGG | 0.270666 | 6_3:-55757823 | Msa0954620:three_prime_UTR |
| GCCTAAACACCTTGGGAGTT+TGG | 0.292769 | 6_3:+55760636 | None:intergenic |
| TGGCAGGCAAAGAAATAAAA+TGG | 0.302063 | 6_3:+55757666 | None:intergenic |
| GATTGAAGCTGATAAATTAA+AGG | 0.308737 | 6_3:-55759081 | Msa0954620:CDS |
| CTTCCTTATTATAAATAAAC+TGG | 0.312097 | 6_3:+55757852 | None:intergenic |
| GTTGATAACAAATAATATAT+AGG | 0.312156 | 6_3:-55757830 | Msa0954620:three_prime_UTR |
| TTCATGGCTTCAGAGGATTC+TGG | 0.318318 | 6_3:+55757994 | None:intergenic |
| ATTAATTTGAAAGAATTTCT+TGG | 0.320433 | 6_3:+55757646 | None:intergenic |
| GGTGGGATTGTTGGTGCAAC+TGG | 0.322423 | 6_3:+55757955 | None:intergenic |
| TTGATAACAAATAATATATA+GGG | 0.322810 | 6_3:-55757829 | Msa0954620:three_prime_UTR |
| GCACCAGGACCATTGCATTC+TGG | 0.332222 | 6_3:-55758036 | Msa0954620:CDS |
| AATTTCTCATGCTAATGTTA+AGG | 0.338744 | 6_3:+55760576 | None:intergenic |
| TGCATTGGTCACTTTCAATA+TGG | 0.343401 | 6_3:+55759057 | None:intergenic |
| ATTTCTCATGCTAATGTTAA+GGG | 0.343971 | 6_3:+55760577 | None:intergenic |
| AGGTTCAACTGTGAGTTTCA+TGG | 0.344462 | 6_3:+55757978 | None:intergenic |
| ATGCATTAAGTCTTGTGGTT+TGG | 0.385790 | 6_3:-55759039 | Msa0954620:CDS |
| TATGCCAACTTTATGGTAAT+AGG | 0.392760 | 6_3:+55760669 | None:intergenic |
| CCTTGAGCCTCACACAACTT+TGG | 0.393654 | 6_3:+55758108 | None:intergenic |
| ACCAAACTCCCAAGGTGTTT+AGG | 0.400815 | 6_3:-55760637 | Msa0954620:five_prime_UTR |
| TGCTAATGCTCGTCGAGAAA+TGG | 0.427098 | 6_3:-55758085 | Msa0954620:CDS |
| ACTTAGAATGGTGGGATTGT+TGG | 0.430110 | 6_3:+55757946 | None:intergenic |
| GAGAAGCATGTTAAGAGAAA+TGG | 0.434680 | 6_3:-55759134 | Msa0954620:CDS |
| TCCTCCTATTACCATAAAGT+TGG | 0.446088 | 6_3:-55760673 | Msa0954620:five_prime_UTR |
| GGTTTGGACAGAAAATCCTT+TGG | 0.451628 | 6_3:-55759023 | Msa0954620:CDS |
| CTCTACTTCAACCTTGCTGC+TGG | 0.455905 | 6_3:-55758912 | Msa0954620:CDS |
| ACCTTCTTGTGCTTGAGCTA+TGG | 0.466405 | 6_3:-55760600 | Msa0954620:exon |
| AAGTAGAGATCAACAATGTT+GGG | 0.477139 | 6_3:+55758927 | None:intergenic |
| GAAGTAGAGATCAACAATGT+TGG | 0.484563 | 6_3:+55758926 | None:intergenic |
| AAGCACAAGAAGGTGTCGTT+GGG | 0.485458 | 6_3:+55760609 | None:intergenic |
| ATGGCTGAGATCAAAAGCTC+TGG | 0.492168 | 6_3:-55758066 | Msa0954620:CDS |
| ATTTGAAAGAATTTCTTGGC+AGG | 0.493575 | 6_3:+55757650 | None:intergenic |
| CTGCAAATGCGCATGTGTCT+TGG | 0.507891 | 6_3:+55759186 | None:intergenic |
| GTTGCAGTGGAAGGAACTCT+AGG | 0.510275 | 6_3:-55760527 | Msa0954620:intron |
| AAAAGCTCTCCTACTTAGAA+TGG | 0.511709 | 6_3:+55757934 | None:intergenic |
| CAAGAAGGTGTCGTTGGGAA+TGG | 0.513358 | 6_3:+55760614 | None:intergenic |
| CAAGCACAAGAAGGTGTCGT+TGG | 0.516401 | 6_3:+55760608 | None:intergenic |
| GGGAATGGCCTAAACACCTT+GGG | 0.518612 | 6_3:+55760629 | None:intergenic |
| TTCAACCTTGCTGCTGGTGA+AGG | 0.536326 | 6_3:-55758906 | Msa0954620:intron |
| GACCAATGCATTAAGTCTTG+TGG | 0.538802 | 6_3:-55759044 | Msa0954620:CDS |
| TTTCCAGAATGCAATGGTCC+TGG | 0.539994 | 6_3:+55758033 | None:intergenic |
| AGCTCTCCTACTTAGAATGG+TGG | 0.544053 | 6_3:+55757937 | None:intergenic |
| GGGATTGTTGGTGCAACTGG+AGG | 0.551808 | 6_3:+55757958 | None:intergenic |
| GCATTTGCAGTGTCATCTGC+AGG | 0.559460 | 6_3:-55759173 | Msa0954620:CDS |
| AGGCAAAGAAATAAAATGGT+TGG | 0.560150 | 6_3:+55757670 | None:intergenic |
| TGGGAATGGCCTAAACACCT+TGG | 0.565204 | 6_3:+55760628 | None:intergenic |
| TGTGAGTTTCATGGCTTCAG+AGG | 0.570124 | 6_3:+55757987 | None:intergenic |
| GCTCTCCTACTTAGAATGGT+GGG | 0.572840 | 6_3:+55757938 | None:intergenic |
| AGCTCTGGAATTGTTGCACC+AGG | 0.572975 | 6_3:-55758051 | Msa0954620:CDS |
| ACAATCCCACCATTCTAAGT+AGG | 0.575676 | 6_3:-55757943 | Msa0954620:exon |
| CCAAAGTTGTGTGAGGCTCA+AGG | 0.580369 | 6_3:-55758108 | Msa0954620:CDS |
| GCCAACTTTATGGTAATAGG+AGG | 0.587765 | 6_3:+55760672 | None:intergenic |
| TGTAACACTGAGGAGAACAA+AGG | 0.597700 | 6_3:+55758958 | None:intergenic |
| AACCACAAGACTTAATGCAT+TGG | 0.598582 | 6_3:+55759042 | None:intergenic |
| GCCATAGCTCAAGCACAAGA+AGG | 0.600313 | 6_3:+55760599 | None:intergenic |
| GTTTCTTCCAAAGTTGTGTG+AGG | 0.618394 | 6_3:-55758115 | Msa0954620:CDS |
| AGAATCAGATGATATTCCAA+AGG | 0.620017 | 6_3:+55759007 | None:intergenic |
| GTGTGTAACTGTTGTATGAG+AGG | 0.634386 | 6_3:-55757760 | Msa0954620:three_prime_UTR |
| ATGAACTTTCCAGAATGCAA+TGG | 0.651949 | 6_3:+55758027 | None:intergenic |
| GTGTACCTTCACCAGCAGCA+AGG | 0.664846 | 6_3:+55758901 | None:intergenic |
| TCAATTATACCAAACTCCCA+AGG | 0.666955 | 6_3:-55760645 | Msa0954620:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAAATTATAATTTTTTT+TGG | - | chr6_3:55758512-55758531 | Msa0954620:intron | 0.0% |
| !!! | AAAAAATTATAATTTTTTTT+GGG | - | chr6_3:55758513-55758532 | Msa0954620:intron | 0.0% |
| !! | ACAAAAATTAACTTAATAAT+AGG | - | chr6_3:55758587-55758606 | Msa0954620:intron | 10.0% |
| !! | CAAAAATTAACTTAATAATA+GGG | - | chr6_3:55758588-55758607 | Msa0954620:intron | 10.0% |
| !!! | AATCAATATTTCTAAAATAA+TGG | - | chr6_3:55759027-55759046 | Msa0954620:CDS | 10.0% |
| !! | TTTGATTCAAATTAATATAA+AGG | + | chr6_3:55760097-55760116 | None:intergenic | 10.0% |
| !!! | ATTTTCTTTTAATTATGTAT+AGG | - | chr6_3:55760167-55760186 | Msa0954620:intron | 10.0% |
| !!! | TTGATAACAAATAATATATA+GGG | - | chr6_3:55760479-55760498 | Msa0954620:intron | 10.0% |
| !! | CAAAAAAACTTAACTAATTT+AGG | + | chr6_3:55757906-55757925 | None:intergenic | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+GGG | - | chr6_3:55758619-55758638 | Msa0954620:intron | 15.0% |
| !!! | TATTTAATCCTTTCTTTTAA+TGG | - | chr6_3:55758712-55758731 | Msa0954620:intron | 15.0% |
| !!! | ATATTTCTAAAATAATGGTT+TGG | - | chr6_3:55759032-55759051 | Msa0954620:CDS | 15.0% |
| !!! | ATGAATTTTATGATTTAAGT+CGG | + | chr6_3:55759518-55759537 | None:intergenic | 15.0% |
| !! | TACATAAATGACTAAAAAAA+TGG | + | chr6_3:55759679-55759698 | None:intergenic | 15.0% |
| !!! | GTTGATAACAAATAATATAT+AGG | - | chr6_3:55760478-55760497 | Msa0954620:intron | 15.0% |
| !!! | ATTAATTTGAAAGAATTTCT+TGG | + | chr6_3:55760665-55760684 | None:intergenic | 15.0% |
| !! | AATAGAAAATTGTAAAACAG+AGG | - | chr6_3:55758118-55758137 | Msa0954620:CDS | 20.0% |
| !!! | TTGAATTTTGATAGTTTTGA+TGG | - | chr6_3:55758148-55758167 | Msa0954620:intron | 20.0% |
| !! | GAATTAATTCAAGTCAAATA+AGG | + | chr6_3:55758183-55758202 | None:intergenic | 20.0% |
| !!! | TGAAGATTGAAAACTTTTAA+GGG | + | chr6_3:55758305-55758324 | None:intergenic | 20.0% |
| !!! | TACATATGATTTTACTTCAA+AGG | + | chr6_3:55758340-55758359 | None:intergenic | 20.0% |
| !!! | GTAGTGATTGAAAATTTTAT+AGG | - | chr6_3:55758618-55758637 | Msa0954620:intron | 20.0% |
| !!! | GAAAAGTTGGTATATTTATA+GGG | - | chr6_3:55758679-55758698 | Msa0954620:intron | 20.0% |
| !! | TAGAAAAATTGAATTAGCAA+AGG | - | chr6_3:55758739-55758758 | Msa0954620:intron | 20.0% |
| !!! | AATTTGCTTATAAATGTGAT+CGG | + | chr6_3:55758809-55758828 | None:intergenic | 20.0% |
| !!! | AATTTGCTTATAAATGTGAT+CGG | + | chr6_3:55758809-55758828 | None:intergenic | 20.0% |
| !!! | TTTTTTAATAAATGTGACTG+AGG | - | chr6_3:55758958-55758977 | Msa0954620:CDS | 20.0% |
| !!! | TAAAATTCTACGATTTTGTA+TGG | + | chr6_3:55759635-55759654 | None:intergenic | 20.0% |
| !!! | ACAAAATCGTAGAATTTTAA+AGG | - | chr6_3:55759636-55759655 | Msa0954620:intron | 20.0% |
| !!! | AGAATTTTAAAGGATTTTCA+AGG | - | chr6_3:55759646-55759665 | Msa0954620:intron | 20.0% |
| !!! | ATTTATGTACAAGTATTTTG+TGG | - | chr6_3:55759690-55759709 | Msa0954620:intron | 20.0% |
| !!! | ATTTATGTACATGTATTTTG+TGG | - | chr6_3:55759784-55759803 | Msa0954620:intron | 20.0% |
| !! | TATATTTAGCATTTCTGATT+CGG | - | chr6_3:55759849-55759868 | Msa0954620:intron | 20.0% |
| !! | ATAATTCATGAAGATAATGA+TGG | + | chr6_3:55760038-55760057 | None:intergenic | 20.0% |
| !! | TGTCCAGTTTATTTATAATA+AGG | - | chr6_3:55760453-55760472 | Msa0954620:intron | 20.0% |
| !! | CTTCCTTATTATAAATAAAC+TGG | + | chr6_3:55760459-55760478 | None:intergenic | 20.0% |
| !!! | ACAAATAATATATAGGGTTT+TGG | - | chr6_3:55760485-55760504 | Msa0954620:intron | 20.0% |
| ! | ATTTCTCATGCTAATGTTAA+GGG | + | chr6_3:55757734-55757753 | None:intergenic | 25.0% |
| ! | AATTTCTCATGCTAATGTTA+AGG | + | chr6_3:55757735-55757754 | None:intergenic | 25.0% |
| ! | TAACATTAGCATGAGAAATT+TGG | - | chr6_3:55757735-55757754 | Msa0954620:three_prime_UTR | 25.0% |
| !! | ATGAAGTTTAAGATCATGAT+GGG | + | chr6_3:55757824-55757843 | None:intergenic | 25.0% |
| !! | AATGAAGTTTAAGATCATGA+TGG | + | chr6_3:55757825-55757844 | None:intergenic | 25.0% |
| !! | CTAATTTAGGTTAACATGAA+TGG | + | chr6_3:55757893-55757912 | None:intergenic | 25.0% |
| !!! | GAAGTTTTGAATTTAAATGC+TGG | - | chr6_3:55758094-55758113 | Msa0954620:CDS | 25.0% |
| !! | GTGAAGATTGAAAACTTTTA+AGG | + | chr6_3:55758306-55758325 | None:intergenic | 25.0% |
| !! | AAGTTTTCAATCTTCACTTT+TGG | - | chr6_3:55758309-55758328 | Msa0954620:intron | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | - | chr6_3:55758647-55758666 | Msa0954620:intron | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | - | chr6_3:55758648-55758667 | Msa0954620:intron | 25.0% |
| !!! | AAAATTTTAGAGGGACTAAA+AGG | - | chr6_3:55758657-55758676 | Msa0954620:intron | 25.0% |
| !!! | GGAAAAGTTGGTATATTTAT+AGG | - | chr6_3:55758678-55758697 | Msa0954620:intron | 25.0% |
| ! | TCTATCAACCATTAAAAGAA+AGG | + | chr6_3:55758723-55758742 | None:intergenic | 25.0% |
| ! | CATATAGATCTCTAAATATG+TGG | - | chr6_3:55759057-55759076 | Msa0954620:CDS | 25.0% |
| ! | GATTGAAGCTGATAAATTAA+AGG | - | chr6_3:55759227-55759246 | Msa0954620:intron | 25.0% |
| !!! | ACTAGGATTTTGCTTATTTT+GGG | + | chr6_3:55759588-55759607 | None:intergenic | 25.0% |
| !! | AACTAGGATTTTGCTTATTT+TGG | + | chr6_3:55759589-55759608 | None:intergenic | 25.0% |
| !! | TATTTTGTGGACTTTAAACT+GGG | - | chr6_3:55759703-55759722 | Msa0954620:intron | 25.0% |
| TATGCCAACTTTATGGTAAT+AGG | + | chr6_3:55757642-55757661 | None:intergenic | 30.0% | |
| AATTGACTATGCCAACTTTA+TGG | + | chr6_3:55757649-55757668 | None:intergenic | 30.0% | |
| CACTGCAACAAAAAATACAA+AGG | + | chr6_3:55757770-55757789 | None:intergenic | 30.0% | |
| !!! | CTTTGTATTTTTTGTTGCAG+TGG | - | chr6_3:55757768-55757787 | Msa0954620:three_prime_UTR | 30.0% |
| AAATTTCGTCCTATCTTACA+TGG | - | chr6_3:55758013-55758032 | Msa0954620:CDS | 30.0% | |
| GACTTCTAGATAACTAAACT+TGG | - | chr6_3:55758218-55758237 | Msa0954620:intron | 30.0% | |
| TTATAGGGACTAAAAGTTGA+AGG | - | chr6_3:55758634-55758653 | Msa0954620:intron | 30.0% | |
| CATTGAACAACTTATGTATC+TGG | - | chr6_3:55758881-55758900 | Msa0954620:intron | 30.0% | |
| TGTGGTGAAATTAATATTGC+AGG | - | chr6_3:55759075-55759094 | Msa0954620:CDS | 30.0% | |
| AGAATCAGATGATATTCCAA+AGG | + | chr6_3:55759304-55759323 | None:intergenic | 30.0% | |
| AAGTAGAGATCAACAATGTT+GGG | + | chr6_3:55759384-55759403 | None:intergenic | 30.0% | |
| !! | GATTTTGATGCGATTTAACT+AGG | + | chr6_3:55759605-55759624 | None:intergenic | 30.0% |
| ! | GTATTTTGTGGACTTTAAAC+TGG | - | chr6_3:55759702-55759721 | Msa0954620:intron | 30.0% |
| AAAATCGCAATCAAAATCGA+TGG | + | chr6_3:55759881-55759900 | None:intergenic | 30.0% | |
| AAAATCGCAATCAAAATCGA+AGG | + | chr6_3:55759881-55759900 | None:intergenic | 30.0% | |
| !! | AATCTCGATTTTAACAACCT+TGG | - | chr6_3:55760006-55760025 | Msa0954620:intron | 30.0% |
| GATAATGATGGTATATACCA+AGG | + | chr6_3:55760026-55760045 | None:intergenic | 30.0% | |
| !!! | GTTACACACATTATTTTGAG+TGG | + | chr6_3:55760537-55760556 | None:intergenic | 30.0% |
| AGGCAAAGAAATAAAATGGT+TGG | + | chr6_3:55760641-55760660 | None:intergenic | 30.0% | |
| ATTTGAAAGAATTTCTTGGC+AGG | + | chr6_3:55760661-55760680 | None:intergenic | 30.0% | |
| TCCTCCTATTACCATAAAGT+TGG | - | chr6_3:55757635-55757654 | Msa0954620:three_prime_UTR | 35.0% | |
| TCAATTATACCAAACTCCCA+AGG | - | chr6_3:55757663-55757682 | Msa0954620:three_prime_UTR | 35.0% | |
| !!! | GTATTTTTTGTTGCAGTGGA+AGG | - | chr6_3:55757772-55757791 | Msa0954620:three_prime_UTR | 35.0% |
| TGCTTATAAATGTGATCGGA+TGG | + | chr6_3:55758805-55758824 | None:intergenic | 35.0% | |
| GGTGAAATTAATATTGCAGG+AGG | - | chr6_3:55759078-55759097 | Msa0954620:CDS | 35.0% | |
| ! | GAGAAGCATGTTAAGAGAAA+TGG | - | chr6_3:55759174-55759193 | Msa0954620:CDS | 35.0% |
| ! | TGCATTGGTCACTTTCAATA+TGG | + | chr6_3:55759254-55759273 | None:intergenic | 35.0% |
| AACCACAAGACTTAATGCAT+TGG | + | chr6_3:55759269-55759288 | None:intergenic | 35.0% | |
| ! | ATGCATTAAGTCTTGTGGTT+TGG | - | chr6_3:55759269-55759288 | Msa0954620:intron | 35.0% |
| GAAGTAGAGATCAACAATGT+TGG | + | chr6_3:55759385-55759404 | None:intergenic | 35.0% | |
| ATGAACTTTCCAGAATGCAA+TGG | + | chr6_3:55760284-55760303 | None:intergenic | 35.0% | |
| AAAAGCTCTCCTACTTAGAA+TGG | + | chr6_3:55760377-55760396 | None:intergenic | 35.0% | |
| TGGCAGGCAAAGAAATAAAA+TGG | + | chr6_3:55760645-55760664 | None:intergenic | 35.0% | |
| GCCAACTTTATGGTAATAGG+AGG | + | chr6_3:55757639-55757658 | None:intergenic | 40.0% | |
| TTTCGTCCTATCTTACATGG+AGG | - | chr6_3:55758016-55758035 | Msa0954620:CDS | 40.0% | |
| GAGGGACTAAAAGGAAAAGT+TGG | - | chr6_3:55758666-55758685 | Msa0954620:intron | 40.0% | |
| GACCAATGCATTAAGTCTTG+TGG | - | chr6_3:55759264-55759283 | Msa0954620:intron | 40.0% | |
| GGTTTGGACAGAAAATCCTT+TGG | - | chr6_3:55759285-55759304 | Msa0954620:intron | 40.0% | |
| TGTAACACTGAGGAGAACAA+AGG | + | chr6_3:55759353-55759372 | None:intergenic | 40.0% | |
| ! | GGACAACTTTTGTAACACTG+AGG | + | chr6_3:55759363-55759382 | None:intergenic | 40.0% |
| GTTTCTTCCAAAGTTGTGTG+AGG | - | chr6_3:55760193-55760212 | Msa0954620:intron | 40.0% | |
| AGGTTCAACTGTGAGTTTCA+TGG | + | chr6_3:55760333-55760352 | None:intergenic | 40.0% | |
| ! | ACTTAGAATGGTGGGATTGT+TGG | + | chr6_3:55760365-55760384 | None:intergenic | 40.0% |
| ACAATCCCACCATTCTAAGT+AGG | - | chr6_3:55760365-55760384 | Msa0954620:intron | 40.0% | |
| GTGTGTAACTGTTGTATGAG+AGG | - | chr6_3:55760548-55760567 | Msa0954620:CDS | 40.0% | |
| ! | ACCAAACTCCCAAGGTGTTT+AGG | - | chr6_3:55757671-55757690 | Msa0954620:three_prime_UTR | 45.0% |
| !! | AAGCACAAGAAGGTGTCGTT+GGG | + | chr6_3:55757702-55757721 | None:intergenic | 45.0% |
| ACCTTCTTGTGCTTGAGCTA+TGG | - | chr6_3:55757708-55757727 | Msa0954620:three_prime_UTR | 45.0% | |
| CACACACCTCCATGTAAGAT+AGG | + | chr6_3:55758025-55758044 | None:intergenic | 45.0% | |
| ! | ATTTTGCTCCTCCCTTTCGA+CGG | - | chr6_3:55759976-55759995 | Msa0954620:intron | 45.0% |
| ! | GATTTTGCTTCCCGTCGAAA+GGG | + | chr6_3:55759990-55760009 | None:intergenic | 45.0% |
| ! | AGATTTTGCTTCCCGTCGAA+AGG | + | chr6_3:55759991-55760010 | None:intergenic | 45.0% |
| TGCTAATGCTCGTCGAGAAA+TGG | - | chr6_3:55760223-55760242 | Msa0954620:intron | 45.0% | |
| ATGGCTGAGATCAAAAGCTC+TGG | - | chr6_3:55760242-55760261 | Msa0954620:intron | 45.0% | |
| TTTCCAGAATGCAATGGTCC+TGG | + | chr6_3:55760278-55760297 | None:intergenic | 45.0% | |
| TTCATGGCTTCAGAGGATTC+TGG | + | chr6_3:55760317-55760336 | None:intergenic | 45.0% | |
| TGTGAGTTTCATGGCTTCAG+AGG | + | chr6_3:55760324-55760343 | None:intergenic | 45.0% | |
| GCTCTCCTACTTAGAATGGT+GGG | + | chr6_3:55760373-55760392 | None:intergenic | 45.0% | |
| AGCTCTCCTACTTAGAATGG+TGG | + | chr6_3:55760374-55760393 | None:intergenic | 45.0% | |
| !!! | TGAATTTTTATATTTTTTTA+AGG | - | chr6_3:55758459-55758478 | Msa0954620:intron | 5.0% |
| GCCTAAACACCTTGGGAGTT+TGG | + | chr6_3:55757675-55757694 | None:intergenic | 50.0% | |
| GGGAATGGCCTAAACACCTT+GGG | + | chr6_3:55757682-55757701 | None:intergenic | 50.0% | |
| TGGGAATGGCCTAAACACCT+TGG | + | chr6_3:55757683-55757702 | None:intergenic | 50.0% | |
| !! | CAAGAAGGTGTCGTTGGGAA+TGG | + | chr6_3:55757697-55757716 | None:intergenic | 50.0% |
| !! | CAAGCACAAGAAGGTGTCGT+TGG | + | chr6_3:55757703-55757722 | None:intergenic | 50.0% |
| GCCATAGCTCAAGCACAAGA+AGG | + | chr6_3:55757712-55757731 | None:intergenic | 50.0% | |
| GTTGCAGTGGAAGGAACTCT+AGG | - | chr6_3:55757781-55757800 | Msa0954620:three_prime_UTR | 50.0% | |
| CTGCAAATGCGCATGTGTCT+TGG | + | chr6_3:55759125-55759144 | None:intergenic | 50.0% | |
| GCATTTGCAGTGTCATCTGC+AGG | - | chr6_3:55759135-55759154 | Msa0954620:CDS | 50.0% | |
| CTCTACTTCAACCTTGCTGC+TGG | - | chr6_3:55759396-55759415 | Msa0954620:intron | 50.0% | |
| TTCAACCTTGCTGCTGGTGA+AGG | - | chr6_3:55759402-55759421 | Msa0954620:intron | 50.0% | |
| ! | TTTTGCTCCTCCCTTTCGAC+GGG | - | chr6_3:55759977-55759996 | Msa0954620:intron | 50.0% |
| CCTTGAGCCTCACACAACTT+TGG | + | chr6_3:55760203-55760222 | None:intergenic | 50.0% | |
| CCAAAGTTGTGTGAGGCTCA+AGG | - | chr6_3:55760200-55760219 | Msa0954620:intron | 50.0% | |
| !! | AGCTCTGGAATTGTTGCACC+AGG | - | chr6_3:55760257-55760276 | Msa0954620:intron | 50.0% |
| GTGTACCTTCACCAGCAGCA+AGG | + | chr6_3:55759410-55759429 | None:intergenic | 55.0% | |
| TTTGCTTCCCGTCGAAAGGG+AGG | + | chr6_3:55759987-55760006 | None:intergenic | 55.0% | |
| GCACCAGGACCATTGCATTC+TGG | - | chr6_3:55760272-55760291 | Msa0954620:intron | 55.0% | |
| GGGATTGTTGGTGCAACTGG+AGG | + | chr6_3:55760353-55760372 | None:intergenic | 55.0% | |
| GGTGGGATTGTTGGTGCAAC+TGG | + | chr6_3:55760356-55760375 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 55757629 | 55760701 | 55757629 | ID=Msa0954620;Name=Msa0954620 |
| chr6_3 | mRNA | 55757629 | 55760701 | 55757629 | ID=Msa0954620-mRNA-1;Parent=Msa0954620;Name=Msa0954620-mRNA-1;_AED=0.01;_eAED=0.01;_QI=98|1|1|1|1|1|3|319|198 |
| chr6_3 | exon | 55757629 | 55758141 | 55757629 | ID=Msa0954620-mRNA-1:exon:11421;Parent=Msa0954620-mRNA-1 |
| chr6_3 | exon | 55758907 | 55759233 | 55758907 | ID=Msa0954620-mRNA-1:exon:11420;Parent=Msa0954620-mRNA-1 |
| chr6_3 | exon | 55760528 | 55760701 | 55760528 | ID=Msa0954620-mRNA-1:exon:11419;Parent=Msa0954620-mRNA-1 |
| chr6_3 | five_prime_UTR | 55760604 | 55760701 | 55760604 | ID=Msa0954620-mRNA-1:five_prime_utr;Parent=Msa0954620-mRNA-1 |
| chr6_3 | CDS | 55760528 | 55760603 | 55760528 | ID=Msa0954620-mRNA-1:cds;Parent=Msa0954620-mRNA-1 |
| chr6_3 | CDS | 55758907 | 55759233 | 55758907 | ID=Msa0954620-mRNA-1:cds;Parent=Msa0954620-mRNA-1 |
| chr6_3 | CDS | 55757948 | 55758141 | 55757948 | ID=Msa0954620-mRNA-1:cds;Parent=Msa0954620-mRNA-1 |
| chr6_3 | three_prime_UTR | 55757629 | 55757947 | 55757629 | ID=Msa0954620-mRNA-1:three_prime_utr;Parent=Msa0954620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
