Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0916170 | XP_013452293.1 | 97.917 | 192 | 4 | 0 | 7 | 198 | 1 | 192 | 2.36e-136 | 389 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0088550 | Msa0916170 | 0.834106 | 3.629824e-56 | -8.615850e-47 |
| Msa0724550 | Msa0916170 | 0.814567 | 1.442879e-51 | -8.615850e-47 |
| Msa0754500 | Msa0916170 | 0.800978 | 1.118090e-48 | -8.615850e-47 |
| Msa0765130 | Msa0916170 | 0.809773 | 1.602820e-50 | -8.615850e-47 |
| Msa0830900 | Msa0916170 | 0.805061 | 1.600913e-49 | -8.615850e-47 |
| Msa0135360 | Msa0916170 | 0.832644 | 8.403459e-56 | -8.615850e-47 |
| Msa0179860 | Msa0916170 | 0.810906 | 9.133051e-51 | -8.615850e-47 |
| Msa0190640 | Msa0916170 | 0.850345 | 1.803053e-60 | -8.615850e-47 |
| Msa0232860 | Msa0916170 | 0.801340 | 9.430494e-49 | -8.615850e-47 |
| Msa0232910 | Msa0916170 | 0.841461 | 4.685586e-58 | -8.615850e-47 |
| Msa0253370 | Msa0916170 | 0.800877 | 1.172890e-48 | -8.615850e-47 |
| Msa0558700 | Msa0916170 | 0.811159 | 8.049948e-51 | -8.615850e-47 |
| Msa0916170 | Msa0916590 | 0.891514 | 3.706637e-74 | -8.615850e-47 |
| Msa0916170 | Msa0954620 | 0.897404 | 1.452712e-76 | -8.615850e-47 |
| Msa0916170 | Msa1107800 | 0.815001 | 1.155883e-51 | -8.615850e-47 |
| Msa0916170 | Msa1195750 | 0.828096 | 1.086947e-54 | -8.615850e-47 |
| Msa0916170 | Msa1195760 | 0.811352 | 7.306732e-51 | -8.615850e-47 |
| Msa0916170 | Msa1196040 | 0.813493 | 2.488982e-51 | -8.615850e-47 |
| Msa0916170 | Msa1289130 | 0.805517 | 1.284760e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0916170 | MtrunA17_Chr6g0472041 | 97.917 | 192 | 4 | 0 | 7 | 198 | 1 | 192 | 2.17e-140 | 389 |
| Msa0916170 | MtrunA17_Chr1g0203171 | 72.727 | 198 | 54 | 0 | 1 | 198 | 1 | 198 | 8.15e-108 | 307 |
| Msa0916170 | MtrunA17_Chr7g0241061 | 50.000 | 172 | 82 | 2 | 9 | 177 | 6 | 176 | 2.49e-57 | 178 |
| Msa0916170 | MtrunA17_Chr4g0008141 | 48.276 | 174 | 78 | 1 | 21 | 194 | 18 | 179 | 7.54e-57 | 177 |
| Msa0916170 | MtrunA17_Chr4g0008131 | 50.625 | 160 | 78 | 1 | 10 | 169 | 7 | 165 | 2.29e-54 | 172 |
| Msa0916170 | MtrunA17_Chr4g0008121 | 49.697 | 165 | 71 | 1 | 30 | 194 | 27 | 179 | 1.09e-53 | 170 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0916170 | AT5G52390.1 | 57.143 | 196 | 70 | 6 | 11 | 198 | 6 | 195 | 3.43e-71 | 214 |
| Msa0916170 | AT3G54040.1 | 50.000 | 162 | 74 | 3 | 28 | 189 | 26 | 180 | 4.22e-52 | 166 |
| Msa0916170 | AT3G54040.2 | 50.000 | 162 | 74 | 3 | 28 | 189 | 82 | 236 | 2.06e-51 | 166 |
Find 64 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGACTATGCCAACTTTA+TGG | 0.143672 | 6_2:+34779500 | None:intergenic |
| TCCAGTTTATTTATATAATA+AGG | 0.218735 | 6_2:-34775852 | Msa0916170:three_prime_UTR |
| ACAAATAATATATAGGGTTT+TGG | 0.273619 | 6_2:-34775820 | Msa0916170:three_prime_UTR |
| TAACATTAGCATGAGAAATT+TGG | 0.277141 | 6_2:-34779411 | Msa0916170:CDS |
| GCCTAAACACCTTGGGAGTT+TGG | 0.292769 | 6_2:+34779474 | None:intergenic |
| TGGCAGGCAAAGAAATAAAA+TGG | 0.302063 | 6_2:+34775663 | None:intergenic |
| GATTGAAGCTGATAAATTAA+AGG | 0.308737 | 6_2:-34777019 | Msa0916170:CDS |
| TTCATGGCTTCAGAGGATTC+TGG | 0.318318 | 6_2:+34775993 | None:intergenic |
| ATTAATTTGAAAGAATTTCT+TGG | 0.320433 | 6_2:+34775643 | None:intergenic |
| GGTGGGATTGTTGGTGCAAC+TGG | 0.322423 | 6_2:+34775954 | None:intergenic |
| GTTGATCACAAATAATATAT+AGG | 0.329750 | 6_2:-34775827 | Msa0916170:three_prime_UTR |
| TCCTTATTATATAAATAAAC+TGG | 0.332066 | 6_2:+34775851 | None:intergenic |
| GCACCAGGACCGTTGCATTC+TGG | 0.336818 | 6_2:-34776035 | Msa0916170:CDS |
| AATTTCTCATGCTAATGTTA+AGG | 0.338744 | 6_2:+34779414 | None:intergenic |
| TTGATCACAAATAATATATA+GGG | 0.339501 | 6_2:-34775826 | Msa0916170:three_prime_UTR |
| TGCATTGGTCACTTTCAATA+TGG | 0.343401 | 6_2:+34776995 | None:intergenic |
| ATTTCTCATGCTAATGTTAA+GGG | 0.343971 | 6_2:+34779415 | None:intergenic |
| AGGTTCAACTGTGAGTTTCA+TGG | 0.344462 | 6_2:+34775977 | None:intergenic |
| ATGCATTAAGTCTTGTGGTT+TGG | 0.385790 | 6_2:-34776977 | Msa0916170:CDS |
| TATGCCAACTTTATGGTAAT+AGG | 0.392760 | 6_2:+34779507 | None:intergenic |
| ACCAAACTCCCAAGGTGTTT+AGG | 0.400815 | 6_2:-34779475 | Msa0916170:five_prime_UTR |
| TGCTAATGCTCGTCGAGAAA+TGG | 0.427098 | 6_2:-34776084 | Msa0916170:CDS |
| ACTTAGAATGGTGGGATTGT+TGG | 0.430110 | 6_2:+34775945 | None:intergenic |
| GAGAAGCATGTAAAGAGAAA+TGG | 0.432034 | 6_2:-34777072 | Msa0916170:CDS |
| ACCTTGAGCCTCACACAACT+TGG | 0.437313 | 6_2:+34776106 | None:intergenic |
| TCCTCCTATTACCATAAAGT+TGG | 0.446088 | 6_2:-34779511 | Msa0916170:five_prime_UTR |
| GGTTTGGACAGAAAATCCTT+TGG | 0.451628 | 6_2:-34776961 | Msa0916170:CDS |
| CTGCAAATGCGCACGTGTCT+TGG | 0.455864 | 6_2:+34777124 | None:intergenic |
| CTCTACTTCAACCTTGCTGC+TGG | 0.455905 | 6_2:-34776850 | Msa0916170:CDS |
| ACCTTCTTGTGCTTGAGCTA+TGG | 0.466405 | 6_2:-34779438 | Msa0916170:exon |
| AAGTAGAGATCAACAATGTT+GGG | 0.477139 | 6_2:+34776865 | None:intergenic |
| GAAGTAGAGATCAACAATGT+TGG | 0.484563 | 6_2:+34776864 | None:intergenic |
| AAGCACAAGAAGGTGTCGTT+GGG | 0.485458 | 6_2:+34779447 | None:intergenic |
| ATGGCTGAGATCAAAAGCTC+TGG | 0.492168 | 6_2:-34776065 | Msa0916170:CDS |
| ATTTGAAAGAATTTCTTGGC+AGG | 0.493575 | 6_2:+34775647 | None:intergenic |
| GTTGCAGTGGAAGGAACTCT+AGG | 0.510275 | 6_2:-34779365 | Msa0916170:intron |
| AAAAGCTCTCCTACTTAGAA+TGG | 0.511709 | 6_2:+34775933 | None:intergenic |
| TTTCCAGAATGCAACGGTCC+TGG | 0.512876 | 6_2:+34776032 | None:intergenic |
| CAAGAAGGTGTCGTTGGGAA+TGG | 0.513358 | 6_2:+34779452 | None:intergenic |
| CAAGCACAAGAAGGTGTCGT+TGG | 0.516401 | 6_2:+34779446 | None:intergenic |
| GGGAATGGCCTAAACACCTT+GGG | 0.518612 | 6_2:+34779467 | None:intergenic |
| TTCAACCTTGCTGCTGGTGA+AGG | 0.536326 | 6_2:-34776844 | Msa0916170:intron |
| GACCAATGCATTAAGTCTTG+TGG | 0.538802 | 6_2:-34776982 | Msa0916170:CDS |
| CCCAAGTTGTGTGAGGCTCA+AGG | 0.543865 | 6_2:-34776107 | Msa0916170:CDS |
| AGCTCTCCTACTTAGAATGG+TGG | 0.544053 | 6_2:+34775936 | None:intergenic |
| GGGATTGTTGGTGCAACTGG+AGG | 0.551808 | 6_2:+34775957 | None:intergenic |
| GCATTTGCAGTGTCATCTGC+AGG | 0.559460 | 6_2:-34777111 | Msa0916170:CDS |
| AGGCAAAGAAATAAAATGGT+TGG | 0.560150 | 6_2:+34775667 | None:intergenic |
| CCTTGAGCCTCACACAACTT+GGG | 0.562458 | 6_2:+34776107 | None:intergenic |
| TGGGAATGGCCTAAACACCT+TGG | 0.565204 | 6_2:+34779466 | None:intergenic |
| TGTGAGTTTCATGGCTTCAG+AGG | 0.570124 | 6_2:+34775986 | None:intergenic |
| GCTCTCCTACTTAGAATGGT+GGG | 0.572840 | 6_2:+34775937 | None:intergenic |
| AGCTCTGGAATTGTTGCACC+AGG | 0.572975 | 6_2:-34776050 | Msa0916170:CDS |
| ACAATCCCACCATTCTAAGT+AGG | 0.575676 | 6_2:-34775942 | Msa0916170:exon |
| GCCAACTTTATGGTAATAGG+AGG | 0.587765 | 6_2:+34779510 | None:intergenic |
| TGTAACACTGAGGAGAACAA+AGG | 0.597700 | 6_2:+34776896 | None:intergenic |
| AACCACAAGACTTAATGCAT+TGG | 0.598582 | 6_2:+34776980 | None:intergenic |
| GCCATAGCTCAAGCACAAGA+AGG | 0.600313 | 6_2:+34779437 | None:intergenic |
| GTTTCTTCCCAAGTTGTGTG+AGG | 0.613393 | 6_2:-34776114 | Msa0916170:CDS |
| AGAATCAGATGATATTCCAA+AGG | 0.620017 | 6_2:+34776945 | None:intergenic |
| GTGTGTAACTGTTGTATGAG+AGG | 0.634386 | 6_2:-34775757 | Msa0916170:three_prime_UTR |
| GTGTACCTTCACCAGCAGCA+AGG | 0.664846 | 6_2:+34776839 | None:intergenic |
| TCAATTATACCAAACTCCCA+AGG | 0.666955 | 6_2:-34779483 | Msa0916170:five_prime_UTR |
| ATGAACTTTCCAGAATGCAA+CGG | 0.670221 | 6_2:+34776026 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAATTAACTTAATAAT+AGG | - | chr6_2:34776721-34776740 | Msa0916170:intron | 10.0% |
| !! | CAAAAATTAACTTAATAATA+GGG | - | chr6_2:34776722-34776741 | Msa0916170:intron | 10.0% |
| !!! | ATATTTTCATCTTTAATTTT+TGG | - | chr6_2:34776953-34776972 | Msa0916170:CDS | 10.0% |
| !!! | ACAAAATCAATATTTTTAAA+AGG | - | chr6_2:34777171-34777190 | Msa0916170:intron | 10.0% |
| !!! | CAAAATCAATATTTTTAAAA+GGG | - | chr6_2:34777172-34777191 | Msa0916170:intron | 10.0% |
| !! | AAAAATCGTAAAAAAAAATT+CGG | - | chr6_2:34777685-34777704 | Msa0916170:intron | 10.0% |
| !! | ATTATAAATGACAAAAAAAA+TGG | + | chr6_2:34778577-34778596 | None:intergenic | 10.0% |
| !! | TTTGATTCAAATTAATATAA+AGG | + | chr6_2:34778933-34778952 | None:intergenic | 10.0% |
| !!! | ATTTTCTTTTAATTATGTAT+AGG | - | chr6_2:34779003-34779022 | Msa0916170:intron | 10.0% |
| !! | CAAAAAAACTTAACTAATTT+AGG | + | chr6_2:34775903-34775922 | None:intergenic | 15.0% |
| !!! | TTGAATTTTTAAAGTTTTGA+TGG | - | chr6_2:34776145-34776164 | Msa0916170:intron | 15.0% |
| !!! | TATGATTTTACTTTAAAAGA+GGG | + | chr6_2:34776469-34776488 | None:intergenic | 15.0% |
| !!! | ATATGATTTTACTTTAAAAG+AGG | + | chr6_2:34776470-34776489 | None:intergenic | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+GGG | - | chr6_2:34776753-34776772 | Msa0916170:intron | 15.0% |
| !! | GAAAATTTGGTATATTTATA+GGG | - | chr6_2:34776813-34776832 | Msa0916170:intron | 15.0% |
| !!! | TATTTAATCCTTTCTTTTAA+TGG | - | chr6_2:34776846-34776865 | Msa0916170:CDS | 15.0% |
| !! | ATAGAAAAATTGAATTAGTA+AGG | - | chr6_2:34776872-34776891 | Msa0916170:CDS | 15.0% |
| !!! | AATTTTCTTATAAATGTGAT+TGG | + | chr6_2:34776994-34777013 | None:intergenic | 15.0% |
| !!! | CTGAAAAAACTAAAATTTTT+CGG | - | chr6_2:34777499-34777518 | Msa0916170:intron | 15.0% |
| !! | AAAAACCGTAAAAAAAAATT+CGG | - | chr6_2:34777525-34777544 | Msa0916170:intron | 15.0% |
| !! | AAAATCGTAAAAAAAAATTC+GGG | - | chr6_2:34777686-34777705 | Msa0916170:intron | 15.0% |
| !!! | ATGAATTTTATGTTTTAAGT+CGG | + | chr6_2:34778415-34778434 | None:intergenic | 15.0% |
| !!! | AGAATTTTAAAGGATTTTAA+AGG | - | chr6_2:34778544-34778563 | Msa0916170:intron | 15.0% |
| !!! | TTTATAATACAAGTATTTTG+TGG | - | chr6_2:34778589-34778608 | Msa0916170:intron | 15.0% |
| !! | TCCAGTTTATTTATATAATA+AGG | - | chr6_2:34779291-34779310 | Msa0916170:intron | 15.0% |
| !! | TCCTTATTATATAAATAAAC+TGG | + | chr6_2:34779295-34779314 | None:intergenic | 15.0% |
| !! | TTGATCACAAATAATATATA+GGG | - | chr6_2:34779317-34779336 | Msa0916170:intron | 15.0% |
| !!! | ATTAATTTGAAAGAATTTCT+TGG | + | chr6_2:34779503-34779522 | None:intergenic | 15.0% |
| !! | GAATTAATTCAAGTCAAATA+AGG | + | chr6_2:34776180-34776199 | None:intergenic | 20.0% |
| !! | GAATTAATTCAAGTCAAATA+AGG | + | chr6_2:34776180-34776199 | None:intergenic | 20.0% |
| !!! | TGAAGATTGAAAACTTTTAA+GGG | + | chr6_2:34776438-34776457 | None:intergenic | 20.0% |
| !!! | GTAGTGATTGAAAATTTTAT+AGG | - | chr6_2:34776752-34776771 | Msa0916170:intron | 20.0% |
| !! | CGAAAATTTGGTATATTTAT+AGG | - | chr6_2:34776812-34776831 | Msa0916170:intron | 20.0% |
| !!! | TTTTTTTATAAATGTGACTG+AGG | - | chr6_2:34777107-34777126 | Msa0916170:CDS | 20.0% |
| !! | TCAAATGATTAAGAATTACA+GGG | + | chr6_2:34777830-34777849 | None:intergenic | 20.0% |
| !! | AAGGAAAAAAAAATAAGTCA+GGG | + | chr6_2:34777374-34777393 | None:intergenic | 20.0% |
| !! | TAAGGAAAAAAAAATAAGTC+AGG | + | chr6_2:34777375-34777394 | None:intergenic | 20.0% |
| !! | AAAACCGTAAAAAAAAATTC+GGG | - | chr6_2:34777526-34777545 | Msa0916170:intron | 20.0% |
| !!! | TTTTCCCGAATTTTTTTTTA+CGG | + | chr6_2:34777533-34777552 | None:intergenic | 20.0% |
| !!! | CTGAAAAAACTGAAATTTTT+CGG | - | chr6_2:34777659-34777678 | Msa0916170:intron | 20.0% |
| !! | TCAAATGATTAAGAATTACA+GGG | - | chr6_2:34777830-34777849 | Msa0916170:intron | 20.0% |
| !!! | CAAAACCATTATTTTAGAAA+GGG | + | chr6_2:34777933-34777952 | None:intergenic | 20.0% |
| !!! | ACAAAACCATTATTTTAGAA+AGG | + | chr6_2:34777934-34777953 | None:intergenic | 20.0% |
| !!! | TAAAATTCTACGATTTTGTA+TGG | + | chr6_2:34778533-34778552 | None:intergenic | 20.0% |
| !!! | ACAAAATCGTAGAATTTTAA+AGG | - | chr6_2:34778534-34778553 | Msa0916170:intron | 20.0% |
| !!! | AAATCTCGATTTTAAAAACT+TGG | - | chr6_2:34778842-34778861 | Msa0916170:intron | 20.0% |
| !! | ATAATTCATGAAGATAATGA+TGG | + | chr6_2:34778874-34778893 | None:intergenic | 20.0% |
| !! | GTTGATCACAAATAATATAT+AGG | - | chr6_2:34779316-34779335 | Msa0916170:intron | 20.0% |
| !!! | ACAAATAATATATAGGGTTT+TGG | - | chr6_2:34779323-34779342 | Msa0916170:intron | 20.0% |
| ! | ATTTCTCATGCTAATGTTAA+GGG | + | chr6_2:34775731-34775750 | None:intergenic | 25.0% |
| ! | AATTTCTCATGCTAATGTTA+AGG | + | chr6_2:34775732-34775751 | None:intergenic | 25.0% |
| ! | TAACATTAGCATGAGAAATT+TGG | - | chr6_2:34775732-34775751 | Msa0916170:three_prime_UTR | 25.0% |
| !! | ATGAAGTTTAAGATCATGAT+GGG | + | chr6_2:34775821-34775840 | None:intergenic | 25.0% |
| !! | AATGAAGTTTAAGATCATGA+TGG | + | chr6_2:34775822-34775841 | None:intergenic | 25.0% |
| !! | CTAATTTAGGTTAACATGAA+TGG | + | chr6_2:34775890-34775909 | None:intergenic | 25.0% |
| !!! | GAAGTTTTGAATTTAAATGC+TGG | - | chr6_2:34776091-34776110 | Msa0916170:CDS | 25.0% |
| !! | TATCTAGTTTAGTTATCTAC+AGG | + | chr6_2:34776220-34776239 | None:intergenic | 25.0% |
| !!! | ACTAAACTAGATAGTTTTGA+TGG | - | chr6_2:34776227-34776246 | Msa0916170:intron | 25.0% |
| ! | CCATCAAAACTATCAAAATA+AGG | + | chr6_2:34776262-34776281 | None:intergenic | 25.0% |
| !!! | CCTTATTTTGATAGTTTTGA+TGG | - | chr6_2:34776259-34776278 | Msa0916170:intron | 25.0% |
| ! | TGACTTGAATTAATTCATAG+AGG | - | chr6_2:34776184-34776203 | Msa0916170:intron | 25.0% |
| !! | GTGAAGATTGAAAACTTTTA+AGG | + | chr6_2:34776439-34776458 | None:intergenic | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | - | chr6_2:34776781-34776800 | Msa0916170:intron | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | - | chr6_2:34776782-34776801 | Msa0916170:intron | 25.0% |
| ! | TCTATCAACCATTAAAAGAA+AGG | + | chr6_2:34776857-34776876 | None:intergenic | 25.0% |
| ! | AATTCTCTCATTAAGTTTAG+TGG | - | chr6_2:34776911-34776930 | Msa0916170:CDS | 25.0% |
| ! | TTCTTATAAATGTGATTGGA+TGG | + | chr6_2:34776990-34777009 | None:intergenic | 25.0% |
| ! | CTCAAATGATTAAGAATTAC+AGG | + | chr6_2:34777829-34777848 | None:intergenic | 25.0% |
| ! | AGGAAAAAAAAATAAGTCAG+GGG | + | chr6_2:34777373-34777392 | None:intergenic | 25.0% |
| ! | AAAAAAATTCGGGAAAAAAC+TGG | - | chr6_2:34777536-34777555 | Msa0916170:intron | 25.0% |
| ! | AAAAAATTCGGGAAAAAACT+GGG | - | chr6_2:34777537-34777556 | Msa0916170:intron | 25.0% |
| ! | CTCAAATGATTAAGAATTAC+AGG | - | chr6_2:34777829-34777848 | Msa0916170:intron | 25.0% |
| !!! | TCTTACCCTTTCTAAAATAA+TGG | - | chr6_2:34777925-34777944 | Msa0916170:intron | 25.0% |
| ! | TCATATAGATCTCTAATATG+TGG | - | chr6_2:34777954-34777973 | Msa0916170:intron | 25.0% |
| ! | GATTGAAGCTGATAAATTAA+AGG | - | chr6_2:34778124-34778143 | Msa0916170:intron | 25.0% |
| !!! | GATTTTGATGCTATTTAACT+AGG | + | chr6_2:34778503-34778522 | None:intergenic | 25.0% |
| !! | TATTTTGTGGACTTTAAACT+GGG | - | chr6_2:34778602-34778621 | Msa0916170:intron | 25.0% |
| !!! | TATTTTGTCGACTTTAAACT+TGG | - | chr6_2:34778696-34778715 | Msa0916170:intron | 25.0% |
| TATGCCAACTTTATGGTAAT+AGG | + | chr6_2:34775639-34775658 | None:intergenic | 30.0% | |
| AATTGACTATGCCAACTTTA+TGG | + | chr6_2:34775646-34775665 | None:intergenic | 30.0% | |
| CACTGCAACAAAAAATACAA+AGG | + | chr6_2:34775767-34775786 | None:intergenic | 30.0% | |
| !!! | CTTTGTATTTTTTGTTGCAG+TGG | - | chr6_2:34775765-34775784 | Msa0916170:three_prime_UTR | 30.0% |
| AAATTTCGTCCTATCTTACA+TGG | - | chr6_2:34776010-34776029 | Msa0916170:CDS | 30.0% | |
| !! | GTGATTTTCACCTTATTTGA+TGG | - | chr6_2:34776281-34776300 | Msa0916170:intron | 30.0% |
| GTGAAAATCACCATCAAATA+AGG | + | chr6_2:34776294-34776313 | None:intergenic | 30.0% | |
| GACTTCTAGATAACTAAACT+TGG | - | chr6_2:34776351-34776370 | Msa0916170:intron | 30.0% | |
| TTATAGGGACTAAAAGTTGA+AGG | - | chr6_2:34776768-34776787 | Msa0916170:intron | 30.0% | |
| CATTGAACAACATATGTATC+TGG | - | chr6_2:34777030-34777049 | Msa0916170:CDS | 30.0% | |
| AAAAAAATTCGGGAAAAAGC+TGG | - | chr6_2:34777696-34777715 | Msa0916170:intron | 30.0% | |
| AAAAAATTCGGGAAAAAGCT+GGG | - | chr6_2:34777697-34777716 | Msa0916170:intron | 30.0% | |
| ! | AGCTGGGAATAAAATTTTGA+AGG | - | chr6_2:34777713-34777732 | Msa0916170:intron | 30.0% |
| TGAAGGAAAAAAAATAAGCC+AGG | - | chr6_2:34777730-34777749 | Msa0916170:intron | 30.0% | |
| GAAGGAAAAAAAATAAGCCA+GGG | - | chr6_2:34777731-34777750 | Msa0916170:intron | 30.0% | |
| AAGGAAAAAAAATAAGCCAG+GGG | - | chr6_2:34777732-34777751 | Msa0916170:intron | 30.0% | |
| GCAAATTACAAAAATGGCAT+GGG | + | chr6_2:34777772-34777791 | None:intergenic | 30.0% | |
| AGCAAATTACAAAAATGGCA+TGG | + | chr6_2:34777773-34777792 | None:intergenic | 30.0% | |
| ACGTCAGCAAATTACAAAAA+TGG | + | chr6_2:34777778-34777797 | None:intergenic | 30.0% | |
| !!! | ATTTTTGTAATTTGCTGACG+TGG | - | chr6_2:34777777-34777796 | Msa0916170:intron | 30.0% |
| TGTGGTGAAATTAATATTGC+AGG | - | chr6_2:34777972-34777991 | Msa0916170:intron | 30.0% | |
| AGAATCAGATGATATTCCAA+AGG | + | chr6_2:34778201-34778220 | None:intergenic | 30.0% | |
| AAGTAGAGATCAACAATGTT+GGG | + | chr6_2:34778281-34778300 | None:intergenic | 30.0% | |
| CTATGAATTTGAGTCATTGA+AGG | + | chr6_2:34778457-34778476 | None:intergenic | 30.0% | |
| !! | ACTAGGATTTTGCTTGTTTT+GGG | + | chr6_2:34778486-34778505 | None:intergenic | 30.0% |
| ! | AACTAGGATTTTGCTTGTTT+TGG | + | chr6_2:34778487-34778506 | None:intergenic | 30.0% |
| ! | GTATTTTGTGGACTTTAAAC+TGG | - | chr6_2:34778601-34778620 | Msa0916170:intron | 30.0% |
| AAAATCGCAATCAAAATCGA+TGG | + | chr6_2:34778783-34778802 | None:intergenic | 30.0% | |
| !!! | GTTACACACATTATTTTGAG+TGG | + | chr6_2:34779375-34779394 | None:intergenic | 30.0% |
| AGGCAAAGAAATAAAATGGT+TGG | + | chr6_2:34779479-34779498 | None:intergenic | 30.0% | |
| ATTTGAAAGAATTTCTTGGC+AGG | + | chr6_2:34779499-34779518 | None:intergenic | 30.0% | |
| TCCTCCTATTACCATAAAGT+TGG | - | chr6_2:34775632-34775651 | Msa0916170:three_prime_UTR | 35.0% | |
| TCAATTATACCAAACTCCCA+AGG | - | chr6_2:34775660-34775679 | Msa0916170:three_prime_UTR | 35.0% | |
| !!! | GTATTTTTTGTTGCAGTGGA+AGG | - | chr6_2:34775769-34775788 | Msa0916170:three_prime_UTR | 35.0% |
| GAGGGACTAAAACGAAAATT+TGG | - | chr6_2:34776800-34776819 | Msa0916170:intron | 35.0% | |
| TCAAATGACCCCTAATTACA+GGG | + | chr6_2:34777890-34777909 | None:intergenic | 35.0% | |
| TTCAAATGACCCCTAATTAC+AGG | + | chr6_2:34777889-34777908 | None:intergenic | 35.0% | |
| AAGAATTACAGGGACAAGAT+GGG | + | chr6_2:34777840-34777859 | None:intergenic | 35.0% | |
| TAAGAATTACAGGGACAAGA+TGG | + | chr6_2:34777839-34777858 | None:intergenic | 35.0% | |
| !!! | ATTTTGGTAATTTGCTGACG+TGG | + | chr6_2:34777328-34777347 | None:intergenic | 35.0% |
| ACGTCAGCAAATTACCAAAA+TGG | - | chr6_2:34777327-34777346 | Msa0916170:intron | 35.0% | |
| AGCAAATTACCAAAATGGCA+TGG | - | chr6_2:34777332-34777351 | Msa0916170:intron | 35.0% | |
| GCAAATTACCAAAATGGCAT+GGG | - | chr6_2:34777333-34777352 | Msa0916170:intron | 35.0% | |
| TAAGAATTACAGGGACAAGA+TGG | - | chr6_2:34777839-34777858 | Msa0916170:intron | 35.0% | |
| AAGAATTACAGGGACAAGAT+GGG | - | chr6_2:34777840-34777859 | Msa0916170:intron | 35.0% | |
| TTCAAATGACCCCTAATTAC+AGG | - | chr6_2:34777889-34777908 | Msa0916170:intron | 35.0% | |
| TCAAATGACCCCTAATTACA+GGG | - | chr6_2:34777890-34777909 | Msa0916170:intron | 35.0% | |
| GGTGAAATTAATATTGCAGG+AGG | - | chr6_2:34777975-34777994 | Msa0916170:intron | 35.0% | |
| ! | GAGAAGCATGTAAAGAGAAA+TGG | - | chr6_2:34778071-34778090 | Msa0916170:intron | 35.0% |
| ! | TGCATTGGTCACTTTCAATA+TGG | + | chr6_2:34778151-34778170 | None:intergenic | 35.0% |
| AACCACAAGACTTAATGCAT+TGG | + | chr6_2:34778166-34778185 | None:intergenic | 35.0% | |
| ! | ATGCATTAAGTCTTGTGGTT+TGG | - | chr6_2:34778166-34778185 | Msa0916170:intron | 35.0% |
| GAAGTAGAGATCAACAATGT+TGG | + | chr6_2:34778282-34778301 | None:intergenic | 35.0% | |
| ! | AGTCGGAATTTTCACTACAA+TGG | + | chr6_2:34778398-34778417 | None:intergenic | 35.0% |
| ! | GATTTTGCTTCACGTCTAAA+GGG | + | chr6_2:34778827-34778846 | None:intergenic | 35.0% |
| ! | AGATTTTGCTTCACGTCTAA+AGG | + | chr6_2:34778828-34778847 | None:intergenic | 35.0% |
| ATGAACTTTCCAGAATGCAA+CGG | + | chr6_2:34779120-34779139 | None:intergenic | 35.0% | |
| AAAAGCTCTCCTACTTAGAA+TGG | + | chr6_2:34779213-34779232 | None:intergenic | 35.0% | |
| TGGCAGGCAAAGAAATAAAA+TGG | + | chr6_2:34779483-34779502 | None:intergenic | 35.0% | |
| GCCAACTTTATGGTAATAGG+AGG | + | chr6_2:34775636-34775655 | None:intergenic | 40.0% | |
| TTTCGTCCTATCTTACATGG+AGG | - | chr6_2:34776013-34776032 | Msa0916170:CDS | 40.0% | |
| ! | TGCTTTTCGTCCCTGTAATT+AGG | - | chr6_2:34777202-34777221 | Msa0916170:intron | 40.0% |
| ! | GCTTTTCGTCCCTGTAATTA+GGG | - | chr6_2:34777203-34777222 | Msa0916170:intron | 40.0% |
| ! | CTTTTCGTCCCTGTAATTAG+GGG | - | chr6_2:34777204-34777223 | Msa0916170:intron | 40.0% |
| TGACGTGGCAGTGATTAAAA+GGG | + | chr6_2:34777792-34777811 | None:intergenic | 40.0% | |
| TGACGTGGCAGTGATTAAAA+GGG | - | chr6_2:34777792-34777811 | Msa0916170:intron | 40.0% | |
| ! | CTTTTCGTCCCTGTAATTAG+GGG | + | chr6_2:34777204-34777223 | None:intergenic | 40.0% |
| ! | GCTTTTCGTCCCTGTAATTA+GGG | + | chr6_2:34777203-34777222 | None:intergenic | 40.0% |
| ! | TGCTTTTCGTCCCTGTAATT+AGG | + | chr6_2:34777202-34777221 | None:intergenic | 40.0% |
| GACCAATGCATTAAGTCTTG+TGG | - | chr6_2:34778161-34778180 | Msa0916170:intron | 40.0% | |
| GGTTTGGACAGAAAATCCTT+TGG | - | chr6_2:34778182-34778201 | Msa0916170:intron | 40.0% | |
| TGTAACACTGAGGAGAACAA+AGG | + | chr6_2:34778250-34778269 | None:intergenic | 40.0% | |
| ! | GGACAACTTTTGTAACACTG+AGG | + | chr6_2:34778260-34778279 | None:intergenic | 40.0% |
| AGGTTCAACTGTGAGTTTCA+TGG | + | chr6_2:34779169-34779188 | None:intergenic | 40.0% | |
| ! | ACTTAGAATGGTGGGATTGT+TGG | + | chr6_2:34779201-34779220 | None:intergenic | 40.0% |
| ACAATCCCACCATTCTAAGT+AGG | - | chr6_2:34779201-34779220 | Msa0916170:intron | 40.0% | |
| GTGTGTAACTGTTGTATGAG+AGG | - | chr6_2:34779386-34779405 | Msa0916170:CDS | 40.0% | |
| ! | ACCAAACTCCCAAGGTGTTT+AGG | - | chr6_2:34775668-34775687 | Msa0916170:three_prime_UTR | 45.0% |
| !! | AAGCACAAGAAGGTGTCGTT+GGG | + | chr6_2:34775699-34775718 | None:intergenic | 45.0% |
| ACCTTCTTGTGCTTGAGCTA+TGG | - | chr6_2:34775705-34775724 | Msa0916170:three_prime_UTR | 45.0% | |
| CACACACCTCCATGTAAGAT+AGG | + | chr6_2:34776022-34776041 | None:intergenic | 45.0% | |
| ! | TGGGAGGATTAGTAAGCTCA+GGG | + | chr6_2:34777859-34777878 | None:intergenic | 45.0% |
| ! | ATGGGAGGATTAGTAAGCTC+AGG | + | chr6_2:34777858-34777877 | None:intergenic | 45.0% |
| AATTACAGGGACAAGATGGG+AGG | + | chr6_2:34777843-34777862 | None:intergenic | 45.0% | |
| GACGTGGCAGTGATTAAAAG+GGG | + | chr6_2:34777793-34777812 | None:intergenic | 45.0% | |
| CTGACGTGGCAGTGATTAAA+AGG | + | chr6_2:34777791-34777810 | None:intergenic | 45.0% | |
| !! | CGTCATTTCCCATGCCATTT+TGG | + | chr6_2:34777761-34777780 | None:intergenic | 45.0% |
| GGAAATGACGAAAATACCCC+TGG | + | chr6_2:34777354-34777373 | None:intergenic | 45.0% | |
| CTGACGTGGCAGTGATTAAA+AGG | - | chr6_2:34777791-34777810 | Msa0916170:intron | 45.0% | |
| GACGTGGCAGTGATTAAAAG+GGG | - | chr6_2:34777793-34777812 | Msa0916170:intron | 45.0% | |
| AATTACAGGGACAAGATGGG+AGG | - | chr6_2:34777843-34777862 | Msa0916170:intron | 45.0% | |
| ! | ATGGGAGGATTAGTAAGCTC+AGG | - | chr6_2:34777858-34777877 | Msa0916170:intron | 45.0% |
| ! | TGGGAGGATTAGTAAGCTCA+GGG | - | chr6_2:34777859-34777878 | Msa0916170:intron | 45.0% |
| TTTGCTTCACGTCTAAAGGG+AGG | + | chr6_2:34778824-34778843 | None:intergenic | 45.0% | |
| GTTTCTTCCCAAGTTGTGTG+AGG | - | chr6_2:34779029-34779048 | Msa0916170:intron | 45.0% | |
| TGCTAATGCTCGTCGAGAAA+TGG | - | chr6_2:34779059-34779078 | Msa0916170:intron | 45.0% | |
| ATGGCTGAGATCAAAAGCTC+TGG | - | chr6_2:34779078-34779097 | Msa0916170:intron | 45.0% | |
| TTCATGGCTTCAGAGGATTC+TGG | + | chr6_2:34779153-34779172 | None:intergenic | 45.0% | |
| TGTGAGTTTCATGGCTTCAG+AGG | + | chr6_2:34779160-34779179 | None:intergenic | 45.0% | |
| GCTCTCCTACTTAGAATGGT+GGG | + | chr6_2:34779209-34779228 | None:intergenic | 45.0% | |
| AGCTCTCCTACTTAGAATGG+TGG | + | chr6_2:34779210-34779229 | None:intergenic | 45.0% | |
| !!! | ATGAATTTTTATATTTTTTA+AGG | - | chr6_2:34776593-34776612 | Msa0916170:intron | 5.0% |
| !!! | TAAAAAATTATAAACTTTTT+TGG | - | chr6_2:34776646-34776665 | Msa0916170:intron | 5.0% |
| !!! | AAAAAATTATAAACTTTTTT+GGG | - | chr6_2:34776647-34776666 | Msa0916170:intron | 5.0% |
| !!! | AAATTTTGAAATTTTTTTTA+AGG | + | chr6_2:34777393-34777412 | None:intergenic | 5.0% |
| !! | TTAAAAATCATAAAAAATTT+CGG | - | chr6_2:34777454-34777473 | Msa0916170:intron | 5.0% |
| !! | TTAAAAAACATAAAAAATTT+CGG | - | chr6_2:34777614-34777633 | Msa0916170:intron | 5.0% |
| GCCTAAACACCTTGGGAGTT+TGG | + | chr6_2:34775672-34775691 | None:intergenic | 50.0% | |
| GGGAATGGCCTAAACACCTT+GGG | + | chr6_2:34775679-34775698 | None:intergenic | 50.0% | |
| TGGGAATGGCCTAAACACCT+TGG | + | chr6_2:34775680-34775699 | None:intergenic | 50.0% | |
| !! | CAAGAAGGTGTCGTTGGGAA+TGG | + | chr6_2:34775694-34775713 | None:intergenic | 50.0% |
| !! | CAAGCACAAGAAGGTGTCGT+TGG | + | chr6_2:34775700-34775719 | None:intergenic | 50.0% |
| GCCATAGCTCAAGCACAAGA+AGG | + | chr6_2:34775709-34775728 | None:intergenic | 50.0% | |
| GTTGCAGTGGAAGGAACTCT+AGG | - | chr6_2:34775778-34775797 | Msa0916170:three_prime_UTR | 50.0% | |
| GCAGTGATTAAAAGGGGCGA+GGG | + | chr6_2:34777799-34777818 | None:intergenic | 50.0% | |
| GCAGTGATTAAAAGGGGCGA+GGG | - | chr6_2:34777799-34777818 | Msa0916170:intron | 50.0% | |
| GCATTTGCAGTGTCATCTGC+AGG | - | chr6_2:34778032-34778051 | Msa0916170:intron | 50.0% | |
| CTCTACTTCAACCTTGCTGC+TGG | - | chr6_2:34778293-34778312 | Msa0916170:intron | 50.0% | |
| TTCAACCTTGCTGCTGGTGA+AGG | - | chr6_2:34778299-34778318 | Msa0916170:intron | 50.0% | |
| CCTTGAGCCTCACACAACTT+GGG | + | chr6_2:34779039-34779058 | None:intergenic | 50.0% | |
| ACCTTGAGCCTCACACAACT+TGG | + | chr6_2:34779040-34779059 | None:intergenic | 50.0% | |
| !! | AGCTCTGGAATTGTTGCACC+AGG | - | chr6_2:34779093-34779112 | Msa0916170:intron | 50.0% |
| TTTCCAGAATGCAACGGTCC+TGG | + | chr6_2:34779114-34779133 | None:intergenic | 50.0% | |
| GGCAGTGATTAAAAGGGGCG+AGG | + | chr6_2:34777798-34777817 | None:intergenic | 55.0% | |
| GGCAGTGATTAAAAGGGGCG+AGG | - | chr6_2:34777798-34777817 | Msa0916170:intron | 55.0% | |
| CTGCAAATGCGCACGTGTCT+TGG | + | chr6_2:34778022-34778041 | None:intergenic | 55.0% | |
| GTGTACCTTCACCAGCAGCA+AGG | + | chr6_2:34778307-34778326 | None:intergenic | 55.0% | |
| CCCAAGTTGTGTGAGGCTCA+AGG | - | chr6_2:34779036-34779055 | Msa0916170:intron | 55.0% | |
| GGGATTGTTGGTGCAACTGG+AGG | + | chr6_2:34779189-34779208 | None:intergenic | 55.0% | |
| GGTGGGATTGTTGGTGCAAC+TGG | + | chr6_2:34779192-34779211 | None:intergenic | 55.0% | |
| GCACCAGGACCGTTGCATTC+TGG | - | chr6_2:34779108-34779127 | Msa0916170:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 34775626 | 34779539 | 34775626 | ID=Msa0916170;Name=Msa0916170 |
| chr6_2 | mRNA | 34775626 | 34779539 | 34775626 | ID=Msa0916170-mRNA-1;Parent=Msa0916170;Name=Msa0916170-mRNA-1;_AED=0.01;_eAED=0.01;_QI=98|1|1|1|1|1|3|321|198 |
| chr6_2 | exon | 34775626 | 34776140 | 34775626 | ID=Msa0916170-mRNA-1:exon:6206;Parent=Msa0916170-mRNA-1 |
| chr6_2 | exon | 34776845 | 34777171 | 34776845 | ID=Msa0916170-mRNA-1:exon:6205;Parent=Msa0916170-mRNA-1 |
| chr6_2 | exon | 34779366 | 34779539 | 34779366 | ID=Msa0916170-mRNA-1:exon:6204;Parent=Msa0916170-mRNA-1 |
| chr6_2 | five_prime_UTR | 34779442 | 34779539 | 34779442 | ID=Msa0916170-mRNA-1:five_prime_utr;Parent=Msa0916170-mRNA-1 |
| chr6_2 | CDS | 34779366 | 34779441 | 34779366 | ID=Msa0916170-mRNA-1:cds;Parent=Msa0916170-mRNA-1 |
| chr6_2 | CDS | 34776845 | 34777171 | 34776845 | ID=Msa0916170-mRNA-1:cds;Parent=Msa0916170-mRNA-1 |
| chr6_2 | CDS | 34775947 | 34776140 | 34775947 | ID=Msa0916170-mRNA-1:cds;Parent=Msa0916170-mRNA-1 |
| chr6_2 | three_prime_UTR | 34775626 | 34775946 | 34775626 | ID=Msa0916170-mRNA-1:three_prime_utr;Parent=Msa0916170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
