AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0213090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0213090 MtrunA17_Chr2g0312691 95.434 219 10 0 1 219 1 219 5.69e-148 410
Msa0213090 MtrunA17_Chr2g0312681 89.041 219 24 0 1 219 1 219 4.47e-147 408
Msa0213090 MtrunA17_Chr2g0312711 88.584 219 24 1 1 219 1 218 1.34e-135 379
Msa0213090 MtrunA17_Chr2g0312771 66.210 219 74 0 1 219 1 219 2.14e-113 323
Msa0213090 MtrunA17_Chr2g0312751 65.297 219 76 0 1 219 1 219 3.94e-112 320
Msa0213090 MtrunA17_Chr2g0312781 65.888 214 73 0 1 214 18 231 2.75e-110 315
Msa0213090 MtrunA17_Chr2g0312731 62.557 219 82 0 1 219 1 219 2.13e-107 308
Msa0213090 MtrunA17_Chr8g0357241 65.297 219 76 0 1 219 1 219 8.15e-105 301
Msa0213090 MtrunA17_Chr8g0357211 63.927 219 79 0 1 219 1 219 4.79e-103 296
Msa0213090 MtrunA17_Chr2g0312811 61.538 221 83 1 1 219 1 221 6.11e-103 296
Msa0213090 MtrunA17_Chr3g0107731 60.829 217 85 0 3 219 8 224 3.16e-101 292
Msa0213090 MtrunA17_Chr2g0312791 60.909 220 84 2 1 218 1 220 7.90e-99 286
Msa0213090 MtrunA17_Chr3g0107741 60.369 217 86 0 3 219 8 224 6.14e-98 284
Msa0213090 MtrunA17_Chr2g0312721 57.416 209 89 0 1 209 1 209 4.70e-88 259
Msa0213090 MtrunA17_Chr4g0069471 64.481 183 62 2 1 182 22 202 3.75e-82 243
Msa0213090 MtrunA17_Chr5g0433801 52.968 219 101 2 2 219 4 221 4.39e-78 233
Msa0213090 MtrunA17_Chr5g0415411 40.807 223 123 3 3 216 4 226 2.49e-50 163
Msa0213090 MtrunA17_Chr5g0417011 36.323 223 132 3 2 217 5 224 8.18e-48 156
Msa0213090 MtrunA17_Chr8g0379581 41.429 210 116 5 2 206 3 210 7.72e-46 151
Msa0213090 MtrunA17_Chr1g0196661 41.509 212 115 4 4 209 3 211 1.55e-45 150
Msa0213090 MtrunA17_Chr4g0008781 37.500 208 125 4 4 208 8 213 7.91e-43 144
Msa0213090 MtrunA17_Chr4g0008791 41.232 211 119 4 4 211 7 215 8.34e-43 144
Msa0213090 MtrunA17_Chr1g0196691 41.038 212 117 5 4 209 28 237 1.39e-42 144
Msa0213090 MtrunA17_Chr2g0313561 88.732 71 8 0 47 117 1 71 1.61e-42 138
Msa0213090 MtrunA17_Chr8g0379561 40.094 212 119 6 1 206 2 211 1.02e-41 141
Msa0213090 MtrunA17_Chr7g0240611 36.866 217 128 5 4 217 7 217 2.63e-41 140
Msa0213090 MtrunA17_Chr8g0363751 37.778 225 127 5 3 218 4 224 7.03e-41 139
Msa0213090 MtrunA17_Chr7g0240641 39.614 207 120 4 5 208 8 212 8.80e-41 139
Msa0213090 MtrunA17_Chr4g0029341 39.269 219 122 6 1 212 1 215 2.18e-40 137
Msa0213090 MtrunA17_Chr7g0240681 37.799 209 124 4 4 208 7 213 4.06e-40 137
Msa0213090 MtrunA17_Chr6g0483141 37.321 209 126 4 3 208 2 208 6.66e-40 136
Msa0213090 MtrunA17_Chr1g0196721 41.584 202 113 3 11 208 9 209 7.58e-40 136
Msa0213090 MtrunA17_Chr1g0196711 40.670 209 119 4 4 208 3 210 2.23e-39 135
Msa0213090 MtrunA17_Chr7g0240631 37.198 207 125 4 5 208 8 212 4.83e-39 134
Msa0213090 MtrunA17_Chr7g0240691 37.799 209 124 4 4 208 37 243 1.68e-38 134
Msa0213090 MtrunA17_Chr7g0240671 36.493 211 125 5 1 208 1 205 5.80e-38 131
Msa0213090 MtrunA17_Chr3g0132581 37.500 216 132 3 3 216 4 218 7.35e-38 131
Msa0213090 MtrunA17_Chr7g0240561 36.574 216 132 4 4 216 7 220 1.42e-37 130
Msa0213090 MtrunA17_Chr1g0196771 36.486 222 125 6 4 216 3 217 1.27e-36 128
Msa0213090 MtrunA17_Chr7g0240511 40.000 200 110 5 4 200 7 199 9.46e-36 125
Msa0213090 MtrunA17_Chr7g0240531 37.981 208 124 4 4 208 7 212 9.57e-36 125
Msa0213090 MtrunA17_Chr7g0240541 38.500 200 118 4 4 200 7 204 1.20e-35 125
Msa0213090 MtrunA17_Chr7g0240651 35.484 217 131 5 4 217 7 217 2.67e-35 124
Msa0213090 MtrunA17_Chr8g0391631 42.949 156 82 3 3 151 20 175 1.16e-34 121
Msa0213090 MtrunA17_Chr7g0240581 38.191 199 118 4 5 200 8 204 1.56e-34 122
Msa0213090 MtrunA17_Chr7g0240551 37.500 208 125 4 4 208 7 212 4.49e-34 121
Msa0213090 MtrunA17_Chr7g0240661 36.842 209 127 5 1 208 4 208 2.21e-33 119
Msa0213090 MtrunA17_Chr1g0212301 35.885 209 124 5 4 205 3 208 4.78e-33 118
Msa0213090 MtrunA17_Chr7g0240521 36.585 205 125 4 4 205 14 216 1.10e-29 110
Msa0213090 MtrunA17_Chr2g0313551 65.909 44 9 1 175 218 1 38 4.41e-13 62.8
Msa0213090 MtrunA17_Chr5g0415421 44.595 74 39 1 28 99 11 84 1.91e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0213090 AT1G17180.1 64.840 219 77 0 1 219 1 219 8.81e-110 314
Msa0213090 AT1G78380.1 67.757 214 69 0 1 214 1 214 3.20e-109 313
Msa0213090 AT1G78370.1 63.256 215 79 0 1 215 1 215 1.30e-102 296
Msa0213090 AT1G78360.1 63.636 220 79 1 1 219 1 220 1.16e-101 293
Msa0213090 AT1G17170.1 63.014 219 80 1 1 219 1 218 2.12e-101 293
Msa0213090 AT1G78340.1 61.682 214 82 0 1 214 1 214 1.50e-99 288
Msa0213090 AT1G78320.1 61.364 220 84 1 1 219 1 220 3.56e-96 280
Msa0213090 AT1G17190.1 60.092 218 86 1 1 217 1 218 7.06e-95 276
Msa0213090 AT1G53680.1 56.164 219 94 2 3 219 6 224 3.17e-90 265
Msa0213090 AT3G43800.1 53.704 216 96 3 4 215 5 220 5.83e-82 244
Msa0213090 AT1G78320.2 53.182 220 75 2 1 219 1 193 3.37e-76 228
Msa0213090 AT1G10360.1 42.661 218 116 5 1 209 1 218 6.63e-53 170
Msa0213090 AT1G59700.1 44.495 218 106 5 4 209 6 220 1.05e-50 164
Msa0213090 AT1G59670.1 45.872 218 103 5 4 209 6 220 5.12e-49 160
Msa0213090 AT2G29420.1 41.379 203 116 3 2 202 7 208 1.65e-47 156
Msa0213090 AT3G09270.1 40.758 211 122 2 5 212 7 217 1.66e-47 156
Msa0213090 AT1G10370.1 41.096 219 115 5 2 209 3 218 3.45e-47 155
Msa0213090 AT1G74590.1 41.969 193 106 3 3 189 6 198 9.98e-46 152
Msa0213090 AT1G69930.1 39.151 212 122 3 5 209 13 224 3.28e-42 143
Msa0213090 AT2G29490.1 37.674 215 130 2 5 216 8 221 7.01e-42 142
Msa0213090 AT1G27140.1 39.631 217 121 4 3 209 5 221 3.48e-41 140
Msa0213090 AT1G27130.1 38.356 219 120 5 3 209 5 220 7.40e-41 139
Msa0213090 AT2G29450.1 40.097 207 111 6 4 202 6 207 1.36e-39 135
Msa0213090 AT2G29480.1 40.976 205 113 6 5 204 8 209 1.79e-39 135
Msa0213090 AT2G29470.1 38.537 205 119 5 5 204 8 210 2.20e-39 135
Msa0213090 AT5G62480.1 34.222 225 136 5 1 214 5 228 2.51e-39 135
Msa0213090 AT2G29440.1 38.462 221 122 6 4 216 6 220 2.64e-39 135
Msa0213090 AT2G29460.1 40.594 202 112 6 4 200 7 205 5.01e-39 134
Msa0213090 AT1G69920.1 36.574 216 124 5 5 209 35 248 9.07e-38 132
Msa0213090 AT5G62480.3 31.694 183 90 4 1 175 5 160 1.32e-22 91.7
Msa0213090 AT5G62480.2 31.694 183 91 4 1 175 5 161 1.64e-22 91.3

Find 60 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAGCTCAAGCTAGATTT+TGG 0.158333 2_1:+55664879 Msa0213090:CDS
ACTAAATAACTCACACTATT+TGG 0.180598 2_1:+55666055 Msa0213090:three_prime_UTR
AGCATAAAACCAGCTGTAAA+AGG 0.226180 2_1:-55665657 None:intergenic
GGTTGATTATATTGACAAAA+AGG 0.226748 2_1:+55664901 Msa0213090:CDS
TTCTATATCCTTCAAATATT+AGG 0.234296 2_1:+55664478 Msa0213090:five_prime_UTR
ATTCCAGTTCTTATTCATAA+TGG 0.270694 2_1:+55664767 Msa0213090:CDS
CATGAAGAAAACACTTGGTT+TGG 0.291507 2_1:+55665814 Msa0213090:CDS
ATAATTGCAGATTCACAAAT+AGG 0.302069 2_1:-55664794 None:intergenic
TGCAGTATATAGATGAAGTT+TGG 0.305831 2_1:+55664819 Msa0213090:CDS
GACATATGGTAACTTTAAAA+TGG 0.308392 2_1:+55665685 Msa0213090:CDS
ATCTAATCTAAGTGAATTAT+AGG 0.310647 2_1:-55664567 None:intergenic
CTTGGTTTGGATTAGAGATT+AGG 0.325473 2_1:+55665827 Msa0213090:exon
AGGAGTGATGAATGTTATTA+TGG 0.332278 2_1:+55665998 Msa0213090:three_prime_UTR
AAGACACTAGAGGAAACTTT+AGG 0.341946 2_1:+55665578 Msa0213090:CDS
GCATGTTTGGTATGAGGGTT+AGG 0.343737 2_1:+55664645 Msa0213090:CDS
CTCTTTCTCCAAACATCTCT+TGG 0.346478 2_1:-55665738 None:intergenic
AAAGTGGCACCACCGTAAAA+AGG 0.374250 2_1:-55665608 None:intergenic
GATACATGGCCTAGCATGTT+TGG 0.374420 2_1:+55664632 Msa0213090:CDS
GGCCTAGCATGTTTGGTATG+AGG 0.389766 2_1:+55664639 Msa0213090:CDS
CTAGCTTGAGCTCTCTCATA+AGG 0.392919 2_1:-55664872 None:intergenic
AGATATAAGATATTATACTA+TGG 0.397337 2_1:+55665930 Msa0213090:three_prime_UTR
TTTAGTGATTTCTACAATCA+TGG 0.407048 2_1:+55664589 Msa0213090:exon
TTTCCATTATGAATAAGAAC+TGG 0.412827 2_1:-55664770 None:intergenic
TCATACACCTTCATTTGATC+AGG 0.418180 2_1:-55665779 None:intergenic
TTAAATATGATATTGCAATA+AGG 0.419484 2_1:+55665882 Msa0213090:three_prime_UTR
CTCAAATGTTCTAGTTGGAC+AGG 0.419811 2_1:-55664451 None:intergenic
ACTTGAGTGTGTCTACAATA+TGG 0.422118 2_1:+55665963 Msa0213090:three_prime_UTR
ATATTCTCAAATGTTCTAGT+TGG 0.430857 2_1:-55664456 None:intergenic
GCATAAAACCAGCTGTAAAA+GGG 0.445528 2_1:-55665656 None:intergenic
AGGAAAATGTGGCTTTCAAA+AGG 0.453535 2_1:+55665512 Msa0213090:CDS
TTGGCCCATGCCATCAGCTT+AGG 0.461650 2_1:-55665719 None:intergenic
GCCTAGCATGTTTGGTATGA+GGG 0.468751 2_1:+55664640 Msa0213090:CDS
GGCATGGGCCAAGAGATGTT+TGG 0.489429 2_1:+55665730 Msa0213090:CDS
GAATGTAGGTGTATGATACT+TGG 0.493096 2_1:+55665489 Msa0213090:intron
AACTCTTCCTGATCAAATGA+AGG 0.495473 2_1:+55665772 Msa0213090:CDS
GACATTCACTAGACAATCTC+CGG 0.514599 2_1:-55664428 None:intergenic
CACATCACACAACCTTGATC+CGG 0.523325 2_1:+55664409 None:intergenic
TGGTAACTTTAAAATGGAAG+TGG 0.524339 2_1:+55665691 Msa0213090:CDS
TAGCTTGAGCTCTCTCATAA+GGG 0.529940 2_1:-55664871 None:intergenic
GGATTCATCTGAAGAAGTAA+AGG 0.531810 2_1:-55664731 None:intergenic
ACTAGACAATCTCCGGATCA+AGG 0.533906 2_1:-55664421 None:intergenic
AATATCAAGAAAGCCAAAAG+TGG 0.548628 2_1:-55665624 None:intergenic
CATGTTATTTATAAAGCTCG+TGG 0.562545 2_1:-55664518 None:intergenic
GTGTCCTAAGCTGATGGCAT+GGG 0.573537 2_1:+55665715 Msa0213090:CDS
AAAGGTGAAGAGCATGAGGA+AGG 0.578570 2_1:+55665530 Msa0213090:CDS
AAGGTGAAGAGCATGAGGAA+GGG 0.585110 2_1:+55665531 Msa0213090:CDS
AGTGTCCTAAGCTGATGGCA+TGG 0.588846 2_1:+55665714 Msa0213090:CDS
CATAAAACCAGCTGTAAAAG+GGG 0.600460 2_1:-55665655 None:intergenic
GCTCTCTCATAAGGGTGAGA+AGG 0.602075 2_1:-55664863 None:intergenic
TACAATCATGGCAAACGAGG+TGG 0.606147 2_1:+55664601 Msa0213090:exon
GTGAGCATGAAGAAAACACT+TGG 0.623270 2_1:+55665809 Msa0213090:CDS
CTCTATCTTTAAGACACTAG+AGG 0.627375 2_1:+55665568 Msa0213090:CDS
TTCAAAAGGTGAAGAGCATG+AGG 0.635141 2_1:+55665526 Msa0213090:CDS
CAATATGGTATTTGATACAG+AGG 0.638682 2_1:+55665978 Msa0213090:three_prime_UTR
ATGATACTTGGAGGAAAATG+TGG 0.639144 2_1:+55665501 Msa0213090:CDS
TCAAATGTTCTAGTTGGACA+GGG 0.640991 2_1:-55664450 None:intergenic
ACCCTCATACCAAACATGCT+AGG 0.644205 2_1:-55664641 None:intergenic
TTCTACAATCATGGCAAACG+AGG 0.652977 2_1:+55664598 Msa0213090:exon
AGTGGAGTGTCCTAAGCTGA+TGG 0.664603 2_1:+55665709 Msa0213090:CDS
TGTAGGTGTATGATACTTGG+AGG 0.669059 2_1:+55665492 Msa0213090:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTACCTAATATTTGA+AGG - chr2_1:55664489-55664508 None:intergenic 15.0%
!!! ATAATTTTCATCCTTAATTT+TGG + chr2_1:55664946-55664965 Msa0213090:intron 15.0%
!! TTAAATATGATATTGCAATA+AGG + chr2_1:55665882-55665901 Msa0213090:three_prime_UTR 15.0%
!! AGATATAAGATATTATACTA+TGG + chr2_1:55665930-55665949 Msa0213090:three_prime_UTR 15.0%
!!! TTTTTTTACCTAATATTTGA+AGG - chr2_1:55664489-55664508 None:intergenic 15.0%
!!! ATAATTTTCATCCTTAATTT+TGG + chr2_1:55664946-55664965 Msa0213090:intron 15.0%
!! TTAAATATGATATTGCAATA+AGG + chr2_1:55665882-55665901 Msa0213090:three_prime_UTR 15.0%
!! AGATATAAGATATTATACTA+TGG + chr2_1:55665930-55665949 Msa0213090:three_prime_UTR 15.0%
!! TTCTATATCCTTCAAATATT+AGG + chr2_1:55664478-55664497 Msa0213090:five_prime_UTR 20.0%
!! ATCTAATCTAAGTGAATTAT+AGG - chr2_1:55664570-55664589 None:intergenic 20.0%
!! TGGATAAACAATTTACTTAA+AGG - chr2_1:55665414-55665433 None:intergenic 20.0%
!! TAAGATCAAGAATGATTATT+TGG - chr2_1:55665434-55665453 None:intergenic 20.0%
!!! TCATTATTGATTTTGAATGT+AGG + chr2_1:55665475-55665494 Msa0213090:intron 20.0%
!! TTCTATATCCTTCAAATATT+AGG + chr2_1:55664478-55664497 Msa0213090:five_prime_UTR 20.0%
!! ATCTAATCTAAGTGAATTAT+AGG - chr2_1:55664570-55664589 None:intergenic 20.0%
!! TGGATAAACAATTTACTTAA+AGG - chr2_1:55665414-55665433 None:intergenic 20.0%
!! TAAGATCAAGAATGATTATT+TGG - chr2_1:55665434-55665453 None:intergenic 20.0%
!!! TCATTATTGATTTTGAATGT+AGG + chr2_1:55665475-55665494 Msa0213090:intron 20.0%
! ATATTCTCAAATGTTCTAGT+TGG - chr2_1:55664459-55664478 None:intergenic 25.0%
! TTTAGTGATTTCTACAATCA+TGG + chr2_1:55664589-55664608 Msa0213090:exon 25.0%
!! ACTGGAATTTTCTTATGAAT+TGG - chr2_1:55664755-55664774 None:intergenic 25.0%
! ATTCCAGTTCTTATTCATAA+TGG + chr2_1:55664767-55664786 Msa0213090:CDS 25.0%
! TTTCCATTATGAATAAGAAC+TGG - chr2_1:55664773-55664792 None:intergenic 25.0%
! ATAATTGCAGATTCACAAAT+AGG - chr2_1:55664797-55664816 None:intergenic 25.0%
! GGTTGATTATATTGACAAAA+AGG + chr2_1:55664901-55664920 Msa0213090:CDS 25.0%
!! ATTTTCATCCTTAATTTTGG+TGG + chr2_1:55664949-55664968 Msa0213090:intron 25.0%
!!! TTTTCATCCTTAATTTTGGT+GGG + chr2_1:55664950-55664969 Msa0213090:intron 25.0%
! AAAATTAGCAGTGTTTATCA+TGG - chr2_1:55665026-55665045 None:intergenic 25.0%
!! ATAAACACTGCTAATTTTTG+TGG + chr2_1:55665028-55665047 Msa0213090:intron 25.0%
! ATAGCACAAAAATTACCAAA+AGG - chr2_1:55665066-55665085 None:intergenic 25.0%
!!! TGAGAGGATTAACAATTTTT+TGG - chr2_1:55665227-55665246 None:intergenic 25.0%
!! TCTAGACTTTTGAATGTATT+TGG - chr2_1:55665271-55665290 None:intergenic 25.0%
!! TTTTATGCTTATGAGACATA+TGG + chr2_1:55665671-55665690 Msa0213090:CDS 25.0%
!! GACATATGGTAACTTTAAAA+TGG + chr2_1:55665685-55665704 Msa0213090:CDS 25.0%
! ACTAAATAACTCACACTATT+TGG + chr2_1:55666055-55666074 Msa0213090:three_prime_UTR 25.0%
! ATATTCTCAAATGTTCTAGT+TGG - chr2_1:55664459-55664478 None:intergenic 25.0%
! TTTAGTGATTTCTACAATCA+TGG + chr2_1:55664589-55664608 Msa0213090:exon 25.0%
!! ACTGGAATTTTCTTATGAAT+TGG - chr2_1:55664755-55664774 None:intergenic 25.0%
! ATTCCAGTTCTTATTCATAA+TGG + chr2_1:55664767-55664786 Msa0213090:CDS 25.0%
! TTTCCATTATGAATAAGAAC+TGG - chr2_1:55664773-55664792 None:intergenic 25.0%
! ATAATTGCAGATTCACAAAT+AGG - chr2_1:55664797-55664816 None:intergenic 25.0%
! GGTTGATTATATTGACAAAA+AGG + chr2_1:55664901-55664920 Msa0213090:CDS 25.0%
!! ATTTTCATCCTTAATTTTGG+TGG + chr2_1:55664949-55664968 Msa0213090:intron 25.0%
!!! TTTTCATCCTTAATTTTGGT+GGG + chr2_1:55664950-55664969 Msa0213090:intron 25.0%
! AAAATTAGCAGTGTTTATCA+TGG - chr2_1:55665026-55665045 None:intergenic 25.0%
!! ATAAACACTGCTAATTTTTG+TGG + chr2_1:55665028-55665047 Msa0213090:intron 25.0%
! ATAGCACAAAAATTACCAAA+AGG - chr2_1:55665066-55665085 None:intergenic 25.0%
!!! TGAGAGGATTAACAATTTTT+TGG - chr2_1:55665227-55665246 None:intergenic 25.0%
!! TCTAGACTTTTGAATGTATT+TGG - chr2_1:55665271-55665290 None:intergenic 25.0%
!! TTTTATGCTTATGAGACATA+TGG + chr2_1:55665671-55665690 Msa0213090:CDS 25.0%
!! GACATATGGTAACTTTAAAA+TGG + chr2_1:55665685-55665704 Msa0213090:CDS 25.0%
! ACTAAATAACTCACACTATT+TGG + chr2_1:55666055-55666074 Msa0213090:three_prime_UTR 25.0%
! CATGTTATTTATAAAGCTCG+TGG - chr2_1:55664521-55664540 None:intergenic 30.0%
TGCAGTATATAGATGAAGTT+TGG + chr2_1:55664819-55664838 Msa0213090:CDS 30.0%
ATCAAAACCCACCAAAATTA+AGG - chr2_1:55664960-55664979 None:intergenic 30.0%
!! TGGTAGATATTTTTGCCTTT+TGG + chr2_1:55665048-55665067 Msa0213090:intron 30.0%
AATTGTTAATCCTCTCATGA+CGG + chr2_1:55665230-55665249 Msa0213090:intron 30.0%
! TTTGAATGTATTTGGAGCTT+AGG - chr2_1:55665263-55665282 None:intergenic 30.0%
AATATCAAGAAAGCCAAAAG+TGG - chr2_1:55665627-55665646 None:intergenic 30.0%
!!! ACTTTTGGCTTTCTTGATAT+TGG + chr2_1:55665626-55665645 Msa0213090:CDS 30.0%
!! TGGTAACTTTAAAATGGAAG+TGG + chr2_1:55665691-55665710 Msa0213090:CDS 30.0%
CAATATGGTATTTGATACAG+AGG + chr2_1:55665978-55665997 Msa0213090:three_prime_UTR 30.0%
AGGAGTGATGAATGTTATTA+TGG + chr2_1:55665998-55666017 Msa0213090:three_prime_UTR 30.0%
! CATGTTATTTATAAAGCTCG+TGG - chr2_1:55664521-55664540 None:intergenic 30.0%
TGCAGTATATAGATGAAGTT+TGG + chr2_1:55664819-55664838 Msa0213090:CDS 30.0%
ATCAAAACCCACCAAAATTA+AGG - chr2_1:55664960-55664979 None:intergenic 30.0%
!! TGGTAGATATTTTTGCCTTT+TGG + chr2_1:55665048-55665067 Msa0213090:intron 30.0%
AATTGTTAATCCTCTCATGA+CGG + chr2_1:55665230-55665249 Msa0213090:intron 30.0%
! TTTGAATGTATTTGGAGCTT+AGG - chr2_1:55665263-55665282 None:intergenic 30.0%
AATATCAAGAAAGCCAAAAG+TGG - chr2_1:55665627-55665646 None:intergenic 30.0%
!!! ACTTTTGGCTTTCTTGATAT+TGG + chr2_1:55665626-55665645 Msa0213090:CDS 30.0%
!! TGGTAACTTTAAAATGGAAG+TGG + chr2_1:55665691-55665710 Msa0213090:CDS 30.0%
CAATATGGTATTTGATACAG+AGG + chr2_1:55665978-55665997 Msa0213090:three_prime_UTR 30.0%
AGGAGTGATGAATGTTATTA+TGG + chr2_1:55665998-55666017 Msa0213090:three_prime_UTR 30.0%
! TCAAATGTTCTAGTTGGACA+GGG - chr2_1:55664453-55664472 None:intergenic 35.0%
GGATTCATCTGAAGAAGTAA+AGG - chr2_1:55664734-55664753 None:intergenic 35.0%
GAATGTAGGTGTATGATACT+TGG + chr2_1:55665489-55665508 Msa0213090:intron 35.0%
ATGATACTTGGAGGAAAATG+TGG + chr2_1:55665501-55665520 Msa0213090:CDS 35.0%
AGGAAAATGTGGCTTTCAAA+AGG + chr2_1:55665512-55665531 Msa0213090:CDS 35.0%
!! CTCTATCTTTAAGACACTAG+AGG + chr2_1:55665568-55665587 Msa0213090:CDS 35.0%
AAGACACTAGAGGAAACTTT+AGG + chr2_1:55665578-55665597 Msa0213090:CDS 35.0%
! TTAGGTGACAAGCCTTTTTA+CGG + chr2_1:55665596-55665615 Msa0213090:CDS 35.0%
CATAAAACCAGCTGTAAAAG+GGG - chr2_1:55665658-55665677 None:intergenic 35.0%
GCATAAAACCAGCTGTAAAA+GGG - chr2_1:55665659-55665678 None:intergenic 35.0%
AGCATAAAACCAGCTGTAAA+AGG - chr2_1:55665660-55665679 None:intergenic 35.0%
AACTCTTCCTGATCAAATGA+AGG + chr2_1:55665772-55665791 Msa0213090:CDS 35.0%
TCATACACCTTCATTTGATC+AGG - chr2_1:55665782-55665801 None:intergenic 35.0%
CATGAAGAAAACACTTGGTT+TGG + chr2_1:55665814-55665833 Msa0213090:CDS 35.0%
!! CTTGGTTTGGATTAGAGATT+AGG + chr2_1:55665827-55665846 Msa0213090:exon 35.0%
ACTTGAGTGTGTCTACAATA+TGG + chr2_1:55665963-55665982 Msa0213090:three_prime_UTR 35.0%
! TCAAATGTTCTAGTTGGACA+GGG - chr2_1:55664453-55664472 None:intergenic 35.0%
GGATTCATCTGAAGAAGTAA+AGG - chr2_1:55664734-55664753 None:intergenic 35.0%
GAATGTAGGTGTATGATACT+TGG + chr2_1:55665489-55665508 Msa0213090:intron 35.0%
ATGATACTTGGAGGAAAATG+TGG + chr2_1:55665501-55665520 Msa0213090:CDS 35.0%
AGGAAAATGTGGCTTTCAAA+AGG + chr2_1:55665512-55665531 Msa0213090:CDS 35.0%
!! CTCTATCTTTAAGACACTAG+AGG + chr2_1:55665568-55665587 Msa0213090:CDS 35.0%
AAGACACTAGAGGAAACTTT+AGG + chr2_1:55665578-55665597 Msa0213090:CDS 35.0%
! TTAGGTGACAAGCCTTTTTA+CGG + chr2_1:55665596-55665615 Msa0213090:CDS 35.0%
CATAAAACCAGCTGTAAAAG+GGG - chr2_1:55665658-55665677 None:intergenic 35.0%
GCATAAAACCAGCTGTAAAA+GGG - chr2_1:55665659-55665678 None:intergenic 35.0%
AGCATAAAACCAGCTGTAAA+AGG - chr2_1:55665660-55665679 None:intergenic 35.0%
AACTCTTCCTGATCAAATGA+AGG + chr2_1:55665772-55665791 Msa0213090:CDS 35.0%
TCATACACCTTCATTTGATC+AGG - chr2_1:55665782-55665801 None:intergenic 35.0%
CATGAAGAAAACACTTGGTT+TGG + chr2_1:55665814-55665833 Msa0213090:CDS 35.0%
!! CTTGGTTTGGATTAGAGATT+AGG + chr2_1:55665827-55665846 Msa0213090:exon 35.0%
ACTTGAGTGTGTCTACAATA+TGG + chr2_1:55665963-55665982 Msa0213090:three_prime_UTR 35.0%
GACATTCACTAGACAATCTC+CGG - chr2_1:55664431-55664450 None:intergenic 40.0%
! CTCAAATGTTCTAGTTGGAC+AGG - chr2_1:55664454-55664473 None:intergenic 40.0%
TTCTACAATCATGGCAAACG+AGG + chr2_1:55664598-55664617 Msa0213090:exon 40.0%
!!! AGGTGGTTTTGTTGGATACA+TGG + chr2_1:55664618-55664637 Msa0213090:CDS 40.0%
TAGCTTGAGCTCTCTCATAA+GGG - chr2_1:55664874-55664893 None:intergenic 40.0%
! AGAGAGCTCAAGCTAGATTT+TGG + chr2_1:55664879-55664898 Msa0213090:CDS 40.0%
! GAGAGCTCAAGCTAGATTTT+GGG + chr2_1:55664880-55664899 Msa0213090:CDS 40.0%
TGTAGGTGTATGATACTTGG+AGG + chr2_1:55665492-55665511 Msa0213090:intron 40.0%
! TTCAAAAGGTGAAGAGCATG+AGG + chr2_1:55665526-55665545 Msa0213090:CDS 40.0%
CTCTTTCTCCAAACATCTCT+TGG - chr2_1:55665741-55665760 None:intergenic 40.0%
GTGAGCATGAAGAAAACACT+TGG + chr2_1:55665809-55665828 Msa0213090:CDS 40.0%
GACATTCACTAGACAATCTC+CGG - chr2_1:55664431-55664450 None:intergenic 40.0%
! CTCAAATGTTCTAGTTGGAC+AGG - chr2_1:55664454-55664473 None:intergenic 40.0%
TTCTACAATCATGGCAAACG+AGG + chr2_1:55664598-55664617 Msa0213090:exon 40.0%
!!! AGGTGGTTTTGTTGGATACA+TGG + chr2_1:55664618-55664637 Msa0213090:CDS 40.0%
TAGCTTGAGCTCTCTCATAA+GGG - chr2_1:55664874-55664893 None:intergenic 40.0%
! AGAGAGCTCAAGCTAGATTT+TGG + chr2_1:55664879-55664898 Msa0213090:CDS 40.0%
! GAGAGCTCAAGCTAGATTTT+GGG + chr2_1:55664880-55664899 Msa0213090:CDS 40.0%
TGTAGGTGTATGATACTTGG+AGG + chr2_1:55665492-55665511 Msa0213090:intron 40.0%
! TTCAAAAGGTGAAGAGCATG+AGG + chr2_1:55665526-55665545 Msa0213090:CDS 40.0%
CTCTTTCTCCAAACATCTCT+TGG - chr2_1:55665741-55665760 None:intergenic 40.0%
GTGAGCATGAAGAAAACACT+TGG + chr2_1:55665809-55665828 Msa0213090:CDS 40.0%
TACAATCATGGCAAACGAGG+TGG + chr2_1:55664601-55664620 Msa0213090:exon 45.0%
GATACATGGCCTAGCATGTT+TGG + chr2_1:55664632-55664651 Msa0213090:CDS 45.0%
GCCTAGCATGTTTGGTATGA+GGG + chr2_1:55664640-55664659 Msa0213090:CDS 45.0%
ACCCTCATACCAAACATGCT+AGG - chr2_1:55664644-55664663 None:intergenic 45.0%
GCATGTTTGGTATGAGGGTT+AGG + chr2_1:55664645-55664664 Msa0213090:CDS 45.0%
CTAGCTTGAGCTCTCTCATA+AGG - chr2_1:55664875-55664894 None:intergenic 45.0%
!! GTTGTCTCAGAAAGTGTCAC+AGG - chr2_1:55665157-55665176 None:intergenic 45.0%
! AAAGGTGAAGAGCATGAGGA+AGG + chr2_1:55665530-55665549 Msa0213090:CDS 45.0%
! AAGGTGAAGAGCATGAGGAA+GGG + chr2_1:55665531-55665550 Msa0213090:CDS 45.0%
AAAGTGGCACCACCGTAAAA+AGG - chr2_1:55665611-55665630 None:intergenic 45.0%
!!! TTTTACGGTGGTGCCACTTT+TGG + chr2_1:55665611-55665630 Msa0213090:CDS 45.0%
TACAATCATGGCAAACGAGG+TGG + chr2_1:55664601-55664620 Msa0213090:exon 45.0%
GATACATGGCCTAGCATGTT+TGG + chr2_1:55664632-55664651 Msa0213090:CDS 45.0%
GCCTAGCATGTTTGGTATGA+GGG + chr2_1:55664640-55664659 Msa0213090:CDS 45.0%
ACCCTCATACCAAACATGCT+AGG - chr2_1:55664644-55664663 None:intergenic 45.0%
GCATGTTTGGTATGAGGGTT+AGG + chr2_1:55664645-55664664 Msa0213090:CDS 45.0%
CTAGCTTGAGCTCTCTCATA+AGG - chr2_1:55664875-55664894 None:intergenic 45.0%
!! GTTGTCTCAGAAAGTGTCAC+AGG - chr2_1:55665157-55665176 None:intergenic 45.0%
! AAAGGTGAAGAGCATGAGGA+AGG + chr2_1:55665530-55665549 Msa0213090:CDS 45.0%
! AAGGTGAAGAGCATGAGGAA+GGG + chr2_1:55665531-55665550 Msa0213090:CDS 45.0%
AAAGTGGCACCACCGTAAAA+AGG - chr2_1:55665611-55665630 None:intergenic 45.0%
!!! TTTTACGGTGGTGCCACTTT+TGG + chr2_1:55665611-55665630 Msa0213090:CDS 45.0%
!!! GGCAAACGAGGTGGTTTTGT+TGG + chr2_1:55664610-55664629 Msa0213090:CDS 50.0%
GGCCTAGCATGTTTGGTATG+AGG + chr2_1:55664639-55664658 Msa0213090:CDS 50.0%
GCTCTCTCATAAGGGTGAGA+AGG - chr2_1:55664866-55664885 None:intergenic 50.0%
AGGTAGTTGTCCGTCATGAG+AGG - chr2_1:55665243-55665262 None:intergenic 50.0%
! GGTGACAAGCCTTTTTACGG+TGG + chr2_1:55665599-55665618 Msa0213090:CDS 50.0%
! GACTGATCCCCTTTTACAGC+TGG + chr2_1:55665648-55665667 Msa0213090:CDS 50.0%
! AGTGGAGTGTCCTAAGCTGA+TGG + chr2_1:55665709-55665728 Msa0213090:CDS 50.0%
AGTGTCCTAAGCTGATGGCA+TGG + chr2_1:55665714-55665733 Msa0213090:CDS 50.0%
GTGTCCTAAGCTGATGGCAT+GGG + chr2_1:55665715-55665734 Msa0213090:CDS 50.0%
!!! GGCAAACGAGGTGGTTTTGT+TGG + chr2_1:55664610-55664629 Msa0213090:CDS 50.0%
GGCCTAGCATGTTTGGTATG+AGG + chr2_1:55664639-55664658 Msa0213090:CDS 50.0%
GCTCTCTCATAAGGGTGAGA+AGG - chr2_1:55664866-55664885 None:intergenic 50.0%
AGGTAGTTGTCCGTCATGAG+AGG - chr2_1:55665243-55665262 None:intergenic 50.0%
! GGTGACAAGCCTTTTTACGG+TGG + chr2_1:55665599-55665618 Msa0213090:CDS 50.0%
! GACTGATCCCCTTTTACAGC+TGG + chr2_1:55665648-55665667 Msa0213090:CDS 50.0%
! AGTGGAGTGTCCTAAGCTGA+TGG + chr2_1:55665709-55665728 Msa0213090:CDS 50.0%
AGTGTCCTAAGCTGATGGCA+TGG + chr2_1:55665714-55665733 Msa0213090:CDS 50.0%
GTGTCCTAAGCTGATGGCAT+GGG + chr2_1:55665715-55665734 Msa0213090:CDS 50.0%
TTGGCCCATGCCATCAGCTT+AGG - chr2_1:55665722-55665741 None:intergenic 55.0%
GGCATGGGCCAAGAGATGTT+TGG + chr2_1:55665730-55665749 Msa0213090:CDS 55.0%
TTGGCCCATGCCATCAGCTT+AGG - chr2_1:55665722-55665741 None:intergenic 55.0%
GGCATGGGCCAAGAGATGTT+TGG + chr2_1:55665730-55665749 Msa0213090:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 55664422 55666108 55664422 ID=Msa0213090;Name=Msa0213090
chr2_1 mRNA 55664422 55666108 55664422 ID=Msa0213090-mRNA-1;Parent=Msa0213090;Name=Msa0213090-mRNA-1;_AED=0.29;_eAED=0.29;_QI=186|1|1|1|1|1|2|267|219
chr2_1 exon 55664422 55664922 55664422 ID=Msa0213090-mRNA-1:exon:15448;Parent=Msa0213090-mRNA-1
chr2_1 exon 55665497 55666108 55665497 ID=Msa0213090-mRNA-1:exon:15449;Parent=Msa0213090-mRNA-1
chr2_1 five_prime_UTR 55664422 55664607 55664422 ID=Msa0213090-mRNA-1:five_prime_utr;Parent=Msa0213090-mRNA-1
chr2_1 CDS 55664608 55664922 55664608 ID=Msa0213090-mRNA-1:cds;Parent=Msa0213090-mRNA-1
chr2_1 CDS 55665497 55665841 55665497 ID=Msa0213090-mRNA-1:cds;Parent=Msa0213090-mRNA-1
chr2_1 three_prime_UTR 55665842 55666108 55665842 ID=Msa0213090-mRNA-1:three_prime_utr;Parent=Msa0213090-mRNA-1
Gene Sequence

>Msa0213090

ATGGCAAACGAGGTGGTTTTGTTGGATACATGGCCTAGCATGTTTGGTATGAGGGTTAGGATTGCATTAGCTGAAAAGAGTGTCAAATATGAGTACAAAGAAGAAGATCTTAGAAATAAGAGTCCTTTACTTCTTCAGATGAATCCAATTCATAAGAAAATTCCAGTTCTTATTCATAATGGAAAACCTATTTGTGAATCTGCAATTATTGTGCAGTATATAGATGAAGTTTGGAATGATAAAGCTTCATTCATGCCTTCTCACCCTTATGAGAGAGCTCAAGCTAGATTTTGGGTTGATTATATTGACAAAAAGGTGTATGATACTTGGAGGAAAATGTGGCTTTCAAAAGGTGAAGAGCATGAGGAAGGGAAGAAAGAATTGATCTCTATCTTTAAGACACTAGAGGAAACTTTAGGTGACAAGCCTTTTTACGGTGGTGCCACTTTTGGCTTTCTTGATATTGGACTGATCCCCTTTTACAGCTGGTTTTATGCTTATGAGACATATGGTAACTTTAAAATGGAAGTGGAGTGTCCTAAGCTGATGGCATGGGCCAAGAGATGTTTGGAGAAAGAGAGTGTTTCAAAAACTCTTCCTGATCAAATGAAGGTGTATGATTTTGTTGTGAGCATGAAGAAAACACTTGGTTTGGATTAG

Protein sequence

>Msa0213090

MANEVVLLDTWPSMFGMRVRIALAEKSVKYEYKEEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESAIIVQYIDEVWNDKASFMPSHPYERAQARFWVDYIDKKVYDTWRKMWLSKGEEHEEGKKELISIFKTLEETLGDKPFYGGATFGFLDIGLIPFYSWFYAYETYGNFKMEVECPKLMAWAKRCLEKESVSKTLPDQMKVYDFVVSMKKTLGLD*