Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0958570 | XP_027187878.1 | 73.256 | 172 | 46 | 0 | 1 | 172 | 193 | 364 | 2.28e-90 | 278 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0958570 | sp|B9SCB6|TPS2_RICCO | 52.663 | 169 | 80 | 0 | 1 | 169 | 381 | 549 | 2.22e-61 | 201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0958570 | A0A3Q7XM77 | 73.256 | 172 | 46 | 0 | 1 | 172 | 193 | 364 | 1.09e-90 | 278 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0894100 | Msa0958570 | 0.858844 | 6.230448e-63 | -8.615850e-47 |
| Msa0916310 | Msa0958570 | 0.808591 | 2.873352e-50 | -8.615850e-47 |
| Msa0920720 | Msa0958570 | 0.827340 | 1.651192e-54 | -8.615850e-47 |
| Msa0920810 | Msa0958570 | 0.812824 | 3.490942e-51 | -8.615850e-47 |
| Msa0920830 | Msa0958570 | 0.822804 | 1.946647e-53 | -8.615850e-47 |
| Msa0958570 | Msa0995620 | 0.835188 | 1.940068e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0958570 | MtrunA17_Chr7g0237021 | 69.186 | 172 | 53 | 0 | 1 | 172 | 1 | 172 | 6.75e-90 | 259 |
| Msa0958570 | MtrunA17_Chr7g0236941 | 69.186 | 172 | 53 | 0 | 1 | 172 | 1 | 172 | 6.75e-90 | 259 |
| Msa0958570 | MtrunA17_Chr7g0236971 | 69.186 | 172 | 53 | 0 | 1 | 172 | 230 | 401 | 3.18e-87 | 261 |
| Msa0958570 | MtrunA17_Chr7g0237011 | 69.186 | 172 | 53 | 0 | 1 | 172 | 327 | 498 | 3.76e-86 | 261 |
| Msa0958570 | MtrunA17_Chr7g0236961 | 69.186 | 172 | 53 | 0 | 1 | 172 | 327 | 498 | 3.89e-86 | 261 |
| Msa0958570 | MtrunA17_Chr7g0236991 | 69.186 | 172 | 53 | 0 | 1 | 172 | 382 | 553 | 1.25e-85 | 261 |
| Msa0958570 | MtrunA17_Chr7g0237001 | 69.186 | 172 | 53 | 0 | 1 | 172 | 382 | 553 | 1.27e-85 | 261 |
| Msa0958570 | MtrunA17_Chr7g0237041 | 69.186 | 172 | 53 | 0 | 1 | 172 | 382 | 553 | 1.27e-85 | 261 |
| Msa0958570 | MtrunA17_Chr7g0237081 | 69.186 | 172 | 53 | 0 | 1 | 172 | 382 | 553 | 1.27e-85 | 261 |
| Msa0958570 | MtrunA17_Chr7g0237051 | 69.186 | 172 | 53 | 0 | 1 | 172 | 382 | 553 | 1.27e-85 | 261 |
| Msa0958570 | MtrunA17_Chr4g0024691 | 69.186 | 172 | 53 | 0 | 1 | 172 | 390 | 561 | 6.01e-84 | 257 |
| Msa0958570 | MtrunA17_Chr6g0465941 | 65.116 | 172 | 60 | 0 | 1 | 172 | 1 | 172 | 3.00e-83 | 243 |
| Msa0958570 | MtrunA17_Chr6g0466121 | 65.116 | 172 | 60 | 0 | 1 | 172 | 1 | 172 | 3.00e-83 | 243 |
| Msa0958570 | MtrunA17_Chr6g0465991 | 65.116 | 172 | 60 | 0 | 1 | 172 | 1 | 172 | 3.00e-83 | 243 |
| Msa0958570 | MtrunA17_Chr6g0466091 | 65.116 | 172 | 60 | 0 | 1 | 172 | 1 | 172 | 3.00e-83 | 243 |
| Msa0958570 | MtrunA17_Chr6g0465881 | 64.535 | 172 | 61 | 0 | 1 | 172 | 1 | 172 | 2.13e-82 | 241 |
| Msa0958570 | MtrunA17_Chr6g0466031 | 65.116 | 172 | 60 | 0 | 1 | 172 | 89 | 260 | 5.42e-82 | 243 |
| Msa0958570 | MtrunA17_Chr6g0465441 | 66.279 | 172 | 58 | 0 | 1 | 172 | 382 | 553 | 4.81e-80 | 247 |
| Msa0958570 | MtrunA17_Chr5g0445501 | 62.209 | 172 | 65 | 0 | 1 | 172 | 1 | 172 | 1.15e-79 | 234 |
| Msa0958570 | MtrunA17_Chr6g0465851 | 65.116 | 172 | 60 | 0 | 1 | 172 | 347 | 518 | 1.84e-79 | 244 |
| Msa0958570 | MtrunA17_Chr6g0465911 | 65.116 | 172 | 60 | 0 | 1 | 172 | 382 | 553 | 5.48e-79 | 244 |
| Msa0958570 | MtrunA17_Chr6g0466051 | 65.116 | 172 | 60 | 0 | 1 | 172 | 382 | 553 | 5.66e-79 | 244 |
| Msa0958570 | MtrunA17_Chr3g0082691 | 62.791 | 172 | 64 | 0 | 1 | 172 | 382 | 553 | 4.29e-78 | 242 |
| Msa0958570 | MtrunA17_Chr3g0105071 | 63.953 | 172 | 62 | 0 | 1 | 172 | 386 | 557 | 7.96e-78 | 241 |
| Msa0958570 | MtrunA17_Chr5g0431651 | 63.529 | 170 | 62 | 0 | 1 | 170 | 381 | 550 | 1.88e-76 | 238 |
| Msa0958570 | MtrunA17_Chr5g0425371 | 65.116 | 172 | 60 | 0 | 1 | 172 | 382 | 553 | 5.61e-76 | 236 |
| Msa0958570 | MtrunA17_Chr6g0451711 | 61.628 | 172 | 66 | 0 | 1 | 172 | 386 | 557 | 6.18e-75 | 234 |
| Msa0958570 | MtrunA17_Chr5g0431571 | 61.176 | 170 | 66 | 0 | 1 | 170 | 378 | 547 | 1.79e-74 | 232 |
| Msa0958570 | MtrunA17_Chr7g0236921 | 63.924 | 158 | 53 | 1 | 19 | 172 | 1 | 158 | 3.29e-74 | 219 |
| Msa0958570 | MtrunA17_Chr7g0236931 | 61.039 | 154 | 57 | 1 | 19 | 172 | 1 | 151 | 1.93e-68 | 204 |
| Msa0958570 | MtrunA17_Chr7g0237061 | 58.140 | 172 | 49 | 2 | 1 | 172 | 89 | 237 | 2.08e-64 | 197 |
| Msa0958570 | MtrunA17_Chr4g0042111 | 55.621 | 169 | 75 | 0 | 1 | 169 | 391 | 559 | 1.98e-63 | 204 |
| Msa0958570 | MtrunA17_Chr2g0319041 | 43.860 | 171 | 93 | 3 | 3 | 172 | 389 | 557 | 6.81e-43 | 149 |
| Msa0958570 | MtrunA17_Chr8g0336181 | 39.306 | 173 | 102 | 3 | 1 | 172 | 386 | 556 | 3.68e-39 | 139 |
| Msa0958570 | MtrunA17_Chr2g0319071 | 39.181 | 171 | 101 | 3 | 1 | 170 | 319 | 487 | 5.39e-39 | 138 |
| Msa0958570 | MtrunA17_Chr2g0319051 | 38.728 | 173 | 103 | 3 | 1 | 172 | 344 | 514 | 4.91e-38 | 136 |
| Msa0958570 | MtrunA17_Chr3g0082711 | 49.138 | 116 | 42 | 1 | 57 | 172 | 1 | 99 | 4.90e-35 | 118 |
| Msa0958570 | MtrunA17_Chr2g0319081 | 38.150 | 173 | 93 | 4 | 1 | 172 | 268 | 427 | 1.14e-32 | 120 |
| Msa0958570 | MtrunA17_Chr4g0048921 | 30.769 | 169 | 112 | 2 | 1 | 166 | 399 | 565 | 2.43e-21 | 90.1 |
| Msa0958570 | MtrunA17_Chr7g0217361 | 29.762 | 168 | 118 | 0 | 3 | 170 | 141 | 308 | 3.47e-20 | 85.1 |
| Msa0958570 | MtrunA17_Chr3g0108941 | 27.647 | 170 | 117 | 4 | 1 | 166 | 346 | 513 | 5.40e-17 | 77.4 |
| Msa0958570 | MtrunA17_Chr4g0023911 | 25.882 | 170 | 126 | 0 | 1 | 170 | 410 | 579 | 6.63e-17 | 77.4 |
| Msa0958570 | MtrunA17_Chr6g0477121 | 28.477 | 151 | 100 | 3 | 1 | 145 | 263 | 411 | 1.83e-16 | 75.9 |
| Msa0958570 | MtrunA17_Chr3g0099031 | 30.000 | 170 | 113 | 4 | 1 | 166 | 345 | 512 | 3.29e-16 | 75.1 |
| Msa0958570 | MtrunA17_Chr4g0048911 | 26.036 | 169 | 117 | 3 | 1 | 164 | 391 | 556 | 3.39e-16 | 75.1 |
| Msa0958570 | MtrunA17_Chr2g0323151 | 26.144 | 153 | 111 | 2 | 1 | 152 | 311 | 462 | 3.66e-16 | 75.1 |
| Msa0958570 | MtrunA17_Chr3g0105691 | 27.922 | 154 | 107 | 3 | 1 | 150 | 378 | 531 | 9.12e-16 | 73.9 |
| Msa0958570 | MtrunA17_Chr3g0108991 | 27.922 | 154 | 107 | 3 | 1 | 150 | 345 | 498 | 1.30e-15 | 73.6 |
| Msa0958570 | MtrunA17_Chr3g0108951 | 27.922 | 154 | 107 | 3 | 1 | 150 | 345 | 498 | 1.30e-15 | 73.6 |
| Msa0958570 | MtrunA17_Chr3g0108971 | 27.922 | 154 | 107 | 3 | 1 | 150 | 320 | 473 | 1.38e-15 | 73.6 |
| Msa0958570 | MtrunA17_Chr3g0109031 | 28.205 | 156 | 104 | 3 | 1 | 150 | 345 | 498 | 2.39e-15 | 72.8 |
| Msa0958570 | MtrunA17_Chr3g0109001 | 28.477 | 151 | 100 | 3 | 1 | 145 | 346 | 494 | 2.46e-15 | 72.8 |
| Msa0958570 | MtrunA17_Chr3g0108981 | 28.477 | 151 | 100 | 3 | 1 | 145 | 321 | 469 | 3.20e-15 | 72.4 |
| Msa0958570 | MtrunA17_Chr3g0108961 | 28.477 | 151 | 100 | 3 | 1 | 145 | 321 | 469 | 3.20e-15 | 72.4 |
| Msa0958570 | MtrunA17_Chr6g0477111 | 27.329 | 161 | 109 | 3 | 1 | 155 | 320 | 478 | 4.11e-15 | 72.0 |
| Msa0958570 | MtrunA17_Chr3g0109011 | 28.205 | 156 | 104 | 3 | 1 | 150 | 320 | 473 | 4.31e-15 | 72.0 |
| Msa0958570 | MtrunA17_Chr3g0109021 | 27.815 | 151 | 101 | 3 | 1 | 145 | 345 | 493 | 1.98e-14 | 70.1 |
| Msa0958570 | MtrunA17_Chr2g0280581 | 27.168 | 173 | 113 | 5 | 1 | 163 | 349 | 518 | 1.26e-13 | 67.8 |
| Msa0958570 | MtrunA17_Chr2g0310401 | 25.595 | 168 | 124 | 1 | 3 | 170 | 264 | 430 | 5.08e-13 | 65.9 |
| Msa0958570 | MtrunA17_Chr2g0323131 | 24.419 | 172 | 125 | 4 | 1 | 170 | 395 | 563 | 2.39e-12 | 63.9 |
| Msa0958570 | MtrunA17_Chr4g0008631 | 36.145 | 83 | 51 | 2 | 91 | 172 | 1 | 82 | 7.17e-12 | 58.5 |
| Msa0958570 | MtrunA17_Chr2g0310331 | 25.000 | 168 | 125 | 1 | 3 | 170 | 418 | 584 | 8.15e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0958570 | AT5G23960.1 | 41.279 | 172 | 100 | 1 | 1 | 172 | 377 | 547 | 4.68e-43 | 150 |
| Msa0958570 | AT5G23960.2 | 41.279 | 172 | 100 | 1 | 1 | 172 | 375 | 545 | 5.28e-43 | 150 |
| Msa0958570 | AT5G48110.1 | 31.953 | 169 | 112 | 3 | 4 | 172 | 174 | 339 | 1.23e-30 | 114 |
| Msa0958570 | AT1G70080.1 | 35.503 | 169 | 108 | 1 | 1 | 168 | 439 | 607 | 2.46e-30 | 115 |
| Msa0958570 | AT4G13300.1 | 32.353 | 170 | 114 | 1 | 4 | 172 | 385 | 554 | 5.91e-30 | 114 |
| Msa0958570 | AT4G20200.1 | 32.544 | 169 | 112 | 2 | 5 | 172 | 437 | 604 | 2.35e-29 | 113 |
| Msa0958570 | AT4G13280.2 | 31.765 | 170 | 115 | 1 | 4 | 172 | 385 | 554 | 4.84e-29 | 112 |
| Msa0958570 | AT3G29410.2 | 31.138 | 167 | 115 | 0 | 4 | 170 | 330 | 496 | 5.86e-29 | 111 |
| Msa0958570 | AT3G29410.1 | 30.769 | 169 | 117 | 0 | 4 | 172 | 435 | 603 | 1.01e-28 | 111 |
| Msa0958570 | AT3G32030.1 | 30.058 | 173 | 120 | 1 | 1 | 172 | 432 | 604 | 2.03e-28 | 110 |
| Msa0958570 | AT5G44630.1 | 31.928 | 166 | 113 | 0 | 5 | 170 | 390 | 555 | 1.19e-27 | 108 |
| Msa0958570 | AT1G61680.2 | 34.969 | 163 | 105 | 1 | 1 | 162 | 400 | 562 | 2.09e-27 | 107 |
| Msa0958570 | AT1G61680.1 | 34.969 | 163 | 105 | 1 | 1 | 162 | 407 | 569 | 2.14e-27 | 107 |
| Msa0958570 | AT3G14520.1 | 30.357 | 168 | 116 | 1 | 6 | 172 | 437 | 604 | 2.27e-27 | 107 |
| Msa0958570 | AT1G33750.1 | 29.586 | 169 | 119 | 0 | 4 | 172 | 435 | 603 | 6.56e-27 | 106 |
| Msa0958570 | AT3G14490.1 | 34.118 | 170 | 110 | 2 | 4 | 172 | 433 | 601 | 6.83e-26 | 103 |
| Msa0958570 | AT4G20210.1 | 27.811 | 169 | 122 | 0 | 4 | 172 | 432 | 600 | 1.52e-25 | 102 |
| Msa0958570 | AT1G31950.1 | 29.412 | 170 | 119 | 1 | 4 | 172 | 437 | 606 | 2.58e-25 | 101 |
| Msa0958570 | AT1G31950.3 | 29.412 | 170 | 119 | 1 | 4 | 172 | 438 | 607 | 2.69e-25 | 101 |
| Msa0958570 | AT3G14540.1 | 29.167 | 168 | 118 | 1 | 6 | 172 | 434 | 601 | 3.71e-25 | 101 |
| Msa0958570 | AT1G48800.1 | 27.273 | 165 | 120 | 0 | 4 | 168 | 438 | 602 | 1.05e-23 | 97.1 |
| Msa0958570 | AT4G20230.2 | 28.916 | 166 | 117 | 1 | 4 | 168 | 448 | 613 | 9.06e-23 | 94.7 |
| Msa0958570 | AT4G20230.1 | 28.916 | 166 | 117 | 1 | 4 | 168 | 436 | 601 | 9.35e-23 | 94.4 |
| Msa0958570 | AT3G29190.1 | 28.235 | 170 | 114 | 2 | 5 | 170 | 434 | 599 | 9.77e-23 | 94.4 |
| Msa0958570 | AT4G15870.1 | 28.571 | 168 | 119 | 1 | 6 | 172 | 431 | 598 | 1.71e-22 | 93.6 |
| Msa0958570 | AT4G13280.1 | 34.351 | 131 | 85 | 1 | 43 | 172 | 394 | 524 | 6.50e-22 | 92.0 |
| Msa0958570 | AT2G23230.2 | 28.402 | 169 | 120 | 1 | 4 | 171 | 431 | 599 | 6.56e-21 | 89.4 |
| Msa0958570 | AT2G23230.1 | 28.402 | 169 | 120 | 1 | 4 | 171 | 426 | 594 | 6.87e-21 | 89.0 |
| Msa0958570 | AT3G29110.1 | 29.341 | 167 | 118 | 0 | 4 | 170 | 429 | 595 | 2.77e-20 | 87.4 |
| Msa0958570 | AT1G66020.1 | 29.091 | 165 | 117 | 0 | 4 | 168 | 430 | 594 | 1.14e-19 | 85.5 |
| Msa0958570 | AT1G48820.1 | 25.767 | 163 | 120 | 1 | 4 | 165 | 395 | 557 | 5.35e-19 | 83.6 |
| Msa0958570 | AT3G25810.1 | 25.843 | 178 | 126 | 3 | 1 | 172 | 420 | 597 | 1.73e-14 | 70.9 |
| Msa0958570 | AT4G16730.1 | 24.855 | 173 | 127 | 2 | 1 | 170 | 365 | 537 | 2.39e-14 | 70.1 |
| Msa0958570 | AT4G16730.2 | 24.855 | 173 | 127 | 2 | 1 | 170 | 319 | 491 | 2.51e-14 | 70.1 |
| Msa0958570 | AT2G24210.1 | 23.295 | 176 | 131 | 3 | 1 | 172 | 415 | 590 | 2.30e-11 | 61.6 |
| Msa0958570 | AT3G25820.1 | 25.843 | 178 | 125 | 4 | 1 | 172 | 418 | 594 | 5.30e-11 | 60.5 |
| Msa0958570 | AT3G25830.1 | 25.843 | 178 | 125 | 4 | 1 | 172 | 418 | 594 | 5.30e-11 | 60.5 |
Find 32 sgRNAs with CRISPR-Local
Find 33 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTATACATTGCAGGCTT+AGG | 0.276774 | 6_3:+72652441 | Msa0958570:CDS |
| TGAGGGAATATGATATGAAT+AGG | 0.340079 | 6_3:+72652643 | Msa0958570:CDS |
| ATGCTGCTGCTATACATTGC+AGG | 0.354080 | 6_3:+72652435 | Msa0958570:CDS |
| AGGACATGTTTCTTCGTACT+TGG | 0.361077 | 6_3:+72652611 | Msa0958570:CDS |
| CGTACTTGGAATGTTATATG+AGG | 0.388936 | 6_3:+72652625 | Msa0958570:CDS |
| CGACAAAAGACATCTTTGAT+TGG | 0.390521 | 6_3:+72652387 | Msa0958570:CDS |
| TGCATGTACTCCTCTGTTGT+TGG | 0.418606 | 6_3:-72652296 | None:intergenic |
| ATAAATACTCAAATTTCTAA+AGG | 0.433133 | 6_3:-72652876 | None:intergenic |
| GACAAAAGACATCTTTGATT+GGG | 0.442878 | 6_3:+72652388 | Msa0958570:CDS |
| AAAAGAAAATTGACAACGCT+TGG | 0.444020 | 6_3:+72652688 | Msa0958570:CDS |
| TGCTATACATTGCAGGCTTA+GGG | 0.448464 | 6_3:+72652442 | Msa0958570:CDS |
| TACGACTTCTTACATTGGAA+TGG | 0.454510 | 6_3:+72652355 | Msa0958570:CDS |
| ATAGTTAGCATTCAGCCATC+TGG | 0.458951 | 6_3:-72652270 | None:intergenic |
| ACGACTTCTTACATTGGAAT+GGG | 0.460983 | 6_3:+72652356 | Msa0958570:CDS |
| GAGGGAATATGATATGAATA+GGG | 0.475500 | 6_3:+72652644 | Msa0958570:CDS |
| CGCTTGGAAAGATATAAATC+AGG | 0.490061 | 6_3:+72652704 | Msa0958570:CDS |
| TTGAGAACACACGTCAGAAT+AGG | 0.502783 | 6_3:-72652756 | None:intergenic |
| TAAGAAGTCGTAGCCAACAC+TGG | 0.522936 | 6_3:-72652344 | None:intergenic |
| ATAGGTAACGGAACTTCAGT+TGG | 0.538099 | 6_3:-72652738 | None:intergenic |
| AAACAGTTTGAGCAGAAAAG+AGG | 0.539017 | 6_3:+72652591 | Msa0958570:intron |
| CTTATATGAGTGAGGCCAGA+TGG | 0.549142 | 6_3:+72652255 | None:intergenic |
| GTACTTGGAATGTTATATGA+GGG | 0.567173 | 6_3:+72652626 | Msa0958570:CDS |
| ATCAAGTGGTTACCCAGTGT+TGG | 0.570889 | 6_3:+72652331 | Msa0958570:CDS |
| TTGGCTACGACTTCTTACAT+TGG | 0.586299 | 6_3:+72652350 | Msa0958570:CDS |
| CACATATCAACAATATCAAG+TGG | 0.594145 | 6_3:+72652317 | Msa0958570:CDS |
| AAGAAGTCGTAGCCAACACT+GGG | 0.613680 | 6_3:-72652343 | None:intergenic |
| GATAACTACACACACTCGGA+CGG | 0.620946 | 6_3:+72652816 | Msa0958570:CDS |
| TACAGATAACTACACACACT+CGG | 0.627170 | 6_3:+72652812 | Msa0958570:CDS |
| AATCCAAGCTTATATGAGTG+AGG | 0.644710 | 6_3:+72652247 | None:intergenic |
| GGATGAAATTGTGTCAAGCG+AGG | 0.666273 | 6_3:+72652463 | Msa0958570:CDS |
| ACACACGTCAGAATAGGTAA+CGG | 0.688917 | 6_3:-72652750 | None:intergenic |
| TAACTATATACCAACAACAG+AGG | 0.703519 | 6_3:+72652286 | Msa0958570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| TAACTATATACCAACAACAG+AGG | + | chr6_3:72652286-72652305 | Msa0958570:CDS | 30.0% | |
| CACATATCAACAATATCAAG+TGG | + | chr6_3:72652317-72652336 | Msa0958570:CDS | 30.0% | |
| GACAAAAGACATCTTTGATT+GGG | + | chr6_3:72652388-72652407 | Msa0958570:CDS | 30.0% | |
| GTACTTGGAATGTTATATGA+GGG | + | chr6_3:72652626-72652645 | Msa0958570:CDS | 30.0% | |
| TGAGGGAATATGATATGAAT+AGG | + | chr6_3:72652643-72652662 | Msa0958570:CDS | 30.0% | |
| GAGGGAATATGATATGAATA+GGG | + | chr6_3:72652644-72652663 | Msa0958570:CDS | 30.0% | |
| ! | TTTCTTTTGGCATTCTTGAA+TGG | - | chr6_3:72652676-72652695 | None:intergenic | 30.0% |
| !! | AAGCGTTGTCAATTTTCTTT+TGG | - | chr6_3:72652689-72652708 | None:intergenic | 30.0% |
| AAAAGAAAATTGACAACGCT+TGG | + | chr6_3:72652688-72652707 | Msa0958570:CDS | 30.0% | |
| TACGACTTCTTACATTGGAA+TGG | + | chr6_3:72652355-72652374 | Msa0958570:CDS | 35.0% | |
| ACGACTTCTTACATTGGAAT+GGG | + | chr6_3:72652356-72652375 | Msa0958570:CDS | 35.0% | |
| CGACAAAAGACATCTTTGAT+TGG | + | chr6_3:72652387-72652406 | Msa0958570:CDS | 35.0% | |
| ! | GCAGCAGCATTAACAATTTT+TGG | - | chr6_3:72652425-72652444 | None:intergenic | 35.0% |
| AAACAGTTTGAGCAGAAAAG+AGG | + | chr6_3:72652591-72652610 | Msa0958570:intron | 35.0% | |
| CGTACTTGGAATGTTATATG+AGG | + | chr6_3:72652625-72652644 | Msa0958570:CDS | 35.0% | |
| CGCTTGGAAAGATATAAATC+AGG | + | chr6_3:72652704-72652723 | Msa0958570:CDS | 35.0% | |
| TACAGATAACTACACACACT+CGG | + | chr6_3:72652812-72652831 | Msa0958570:CDS | 35.0% | |
| ATAGTTAGCATTCAGCCATC+TGG | - | chr6_3:72652273-72652292 | None:intergenic | 40.0% | |
| TTGGCTACGACTTCTTACAT+TGG | + | chr6_3:72652350-72652369 | Msa0958570:CDS | 40.0% | |
| TGCTATACATTGCAGGCTTA+GGG | + | chr6_3:72652442-72652461 | Msa0958570:CDS | 40.0% | |
| AGGACATGTTTCTTCGTACT+TGG | + | chr6_3:72652611-72652630 | Msa0958570:CDS | 40.0% | |
| !! | ATAGGTAACGGAACTTCAGT+TGG | - | chr6_3:72652741-72652760 | None:intergenic | 40.0% |
| ACACACGTCAGAATAGGTAA+CGG | - | chr6_3:72652753-72652772 | None:intergenic | 40.0% | |
| TTGAGAACACACGTCAGAAT+AGG | - | chr6_3:72652759-72652778 | None:intergenic | 40.0% | |
| TGCATGTACTCCTCTGTTGT+TGG | - | chr6_3:72652299-72652318 | None:intergenic | 45.0% | |
| ATCAAGTGGTTACCCAGTGT+TGG | + | chr6_3:72652331-72652350 | Msa0958570:CDS | 45.0% | |
| AAGAAGTCGTAGCCAACACT+GGG | - | chr6_3:72652346-72652365 | None:intergenic | 45.0% | |
| TAAGAAGTCGTAGCCAACAC+TGG | - | chr6_3:72652347-72652366 | None:intergenic | 45.0% | |
| ATGCTGCTGCTATACATTGC+AGG | + | chr6_3:72652435-72652454 | Msa0958570:CDS | 45.0% | |
| CTGCTATACATTGCAGGCTT+AGG | + | chr6_3:72652441-72652460 | Msa0958570:CDS | 45.0% | |
| GGATGAAATTGTGTCAAGCG+AGG | + | chr6_3:72652463-72652482 | Msa0958570:CDS | 45.0% | |
| ! | CAATCTCTCGCGTTTTATCG+AGG | + | chr6_3:72652776-72652795 | Msa0958570:CDS | 45.0% |
| GATAACTACACACACTCGGA+CGG | + | chr6_3:72652816-72652835 | Msa0958570:CDS | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 72652260 | 72652890 | 72652260 | ID=Msa0958570;Name=Msa0958570 |
| chr6_3 | mRNA | 72652260 | 72652890 | 72652260 | ID=Msa0958570-mRNA-1;Parent=Msa0958570;Name=Msa0958570-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|172 |
| chr6_3 | exon | 72652260 | 72652484 | 72652260 | ID=Msa0958570-mRNA-1:exon:13254;Parent=Msa0958570-mRNA-1 |
| chr6_3 | exon | 72652597 | 72652890 | 72652597 | ID=Msa0958570-mRNA-1:exon:13255;Parent=Msa0958570-mRNA-1 |
| chr6_3 | CDS | 72652260 | 72652484 | 72652260 | ID=Msa0958570-mRNA-1:cds;Parent=Msa0958570-mRNA-1 |
| chr6_3 | CDS | 72652597 | 72652890 | 72652597 | ID=Msa0958570-mRNA-1:cds;Parent=Msa0958570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
