Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0920830 | XP_027187878.1 | 72.674 | 172 | 47 | 0 | 1 | 172 | 193 | 364 | 8.60e-89 | 274 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0920830 | sp|Q6Q3H2|TPSVS_VITVI | 51.765 | 170 | 82 | 0 | 1 | 170 | 386 | 555 | 4.82e-60 | 198 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0894100 | Msa0920830 | 0.801600 | 8.342570e-49 | -8.615850e-47 |
| Msa0916290 | Msa0920830 | 0.800441 | 1.438954e-48 | -8.615850e-47 |
| Msa0920720 | Msa0920830 | 0.848973 | 4.356576e-60 | -8.615850e-47 |
| Msa0920770 | Msa0920830 | 0.821333 | 4.268222e-53 | -8.615850e-47 |
| Msa0920820 | Msa0920830 | 0.826990 | 2.002721e-54 | -8.615850e-47 |
| Msa0920830 | Msa0958570 | 0.822804 | 1.946647e-53 | -8.615850e-47 |
| Msa0920830 | Msa0959270 | 0.818457 | 1.940765e-52 | -8.615850e-47 |
| Msa0920830 | Msa0995440 | 0.830944 | 2.207300e-55 | -8.615850e-47 |
| Msa0920830 | Msa0995600 | 0.804617 | 1.982323e-49 | -8.615850e-47 |
| Msa0920830 | Msa0995610 | 0.811528 | 6.692466e-51 | -8.615850e-47 |
| Msa0920830 | Msa0995620 | 0.811275 | 7.593526e-51 | -8.615850e-47 |
| Msa0920830 | Msa0995630 | 0.802616 | 5.156286e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0920830 | MtrunA17_Chr7g0237021 | 68.605 | 172 | 54 | 0 | 1 | 172 | 1 | 172 | 2.30e-88 | 256 |
| Msa0920830 | MtrunA17_Chr7g0236941 | 68.605 | 172 | 54 | 0 | 1 | 172 | 1 | 172 | 2.30e-88 | 256 |
| Msa0920830 | MtrunA17_Chr7g0236971 | 68.605 | 172 | 54 | 0 | 1 | 172 | 230 | 401 | 1.10e-85 | 257 |
| Msa0920830 | MtrunA17_Chr7g0237011 | 68.605 | 172 | 54 | 0 | 1 | 172 | 327 | 498 | 1.37e-84 | 257 |
| Msa0920830 | MtrunA17_Chr7g0236961 | 68.605 | 172 | 54 | 0 | 1 | 172 | 327 | 498 | 1.66e-84 | 257 |
| Msa0920830 | MtrunA17_Chr7g0237001 | 68.605 | 172 | 54 | 0 | 1 | 172 | 382 | 553 | 5.34e-84 | 257 |
| Msa0920830 | MtrunA17_Chr7g0237041 | 68.605 | 172 | 54 | 0 | 1 | 172 | 382 | 553 | 5.34e-84 | 257 |
| Msa0920830 | MtrunA17_Chr7g0237081 | 68.605 | 172 | 54 | 0 | 1 | 172 | 382 | 553 | 5.34e-84 | 257 |
| Msa0920830 | MtrunA17_Chr7g0237051 | 68.605 | 172 | 54 | 0 | 1 | 172 | 382 | 553 | 5.34e-84 | 257 |
| Msa0920830 | MtrunA17_Chr7g0236991 | 68.605 | 172 | 54 | 0 | 1 | 172 | 382 | 553 | 5.82e-84 | 257 |
| Msa0920830 | MtrunA17_Chr4g0024691 | 68.605 | 172 | 54 | 0 | 1 | 172 | 390 | 561 | 2.96e-82 | 253 |
| Msa0920830 | MtrunA17_Chr6g0465941 | 63.953 | 172 | 62 | 0 | 1 | 172 | 1 | 172 | 3.12e-81 | 238 |
| Msa0920830 | MtrunA17_Chr6g0466121 | 63.953 | 172 | 62 | 0 | 1 | 172 | 1 | 172 | 3.12e-81 | 238 |
| Msa0920830 | MtrunA17_Chr6g0465991 | 63.953 | 172 | 62 | 0 | 1 | 172 | 1 | 172 | 3.12e-81 | 238 |
| Msa0920830 | MtrunA17_Chr6g0466091 | 63.953 | 172 | 62 | 0 | 1 | 172 | 1 | 172 | 3.12e-81 | 238 |
| Msa0920830 | MtrunA17_Chr6g0465881 | 63.372 | 172 | 63 | 0 | 1 | 172 | 1 | 172 | 1.86e-80 | 236 |
| Msa0920830 | MtrunA17_Chr6g0466031 | 63.953 | 172 | 62 | 0 | 1 | 172 | 89 | 260 | 6.07e-80 | 238 |
| Msa0920830 | MtrunA17_Chr5g0445501 | 62.209 | 172 | 65 | 0 | 1 | 172 | 1 | 172 | 4.18e-79 | 232 |
| Msa0920830 | MtrunA17_Chr6g0465441 | 65.116 | 172 | 60 | 0 | 1 | 172 | 382 | 553 | 5.73e-78 | 241 |
| Msa0920830 | MtrunA17_Chr6g0465851 | 63.953 | 172 | 62 | 0 | 1 | 172 | 347 | 518 | 1.81e-77 | 239 |
| Msa0920830 | MtrunA17_Chr6g0465911 | 63.953 | 172 | 62 | 0 | 1 | 172 | 382 | 553 | 5.44e-77 | 239 |
| Msa0920830 | MtrunA17_Chr6g0466051 | 63.953 | 172 | 62 | 0 | 1 | 172 | 382 | 553 | 5.61e-77 | 239 |
| Msa0920830 | MtrunA17_Chr3g0082691 | 62.209 | 172 | 65 | 0 | 1 | 172 | 382 | 553 | 1.96e-76 | 238 |
| Msa0920830 | MtrunA17_Chr3g0105071 | 63.372 | 172 | 63 | 0 | 1 | 172 | 386 | 557 | 3.48e-76 | 237 |
| Msa0920830 | MtrunA17_Chr5g0431651 | 62.209 | 172 | 65 | 0 | 1 | 172 | 381 | 552 | 7.79e-75 | 233 |
| Msa0920830 | MtrunA17_Chr5g0425371 | 64.535 | 172 | 61 | 0 | 1 | 172 | 382 | 553 | 3.10e-74 | 232 |
| Msa0920830 | MtrunA17_Chr6g0451711 | 61.047 | 172 | 67 | 0 | 1 | 172 | 386 | 557 | 3.33e-73 | 229 |
| Msa0920830 | MtrunA17_Chr5g0431571 | 60.588 | 170 | 67 | 0 | 1 | 170 | 378 | 547 | 8.21e-73 | 228 |
| Msa0920830 | MtrunA17_Chr7g0236921 | 63.291 | 158 | 54 | 1 | 19 | 172 | 1 | 158 | 1.28e-72 | 215 |
| Msa0920830 | MtrunA17_Chr7g0236931 | 60.390 | 154 | 58 | 1 | 19 | 172 | 1 | 151 | 6.55e-67 | 201 |
| Msa0920830 | MtrunA17_Chr7g0237061 | 57.558 | 172 | 50 | 2 | 1 | 172 | 89 | 237 | 8.01e-63 | 193 |
| Msa0920830 | MtrunA17_Chr4g0042111 | 54.438 | 169 | 77 | 0 | 1 | 169 | 391 | 559 | 2.77e-61 | 198 |
| Msa0920830 | MtrunA17_Chr2g0319041 | 43.860 | 171 | 93 | 3 | 3 | 172 | 389 | 557 | 3.18e-42 | 148 |
| Msa0920830 | MtrunA17_Chr8g0336181 | 39.306 | 173 | 102 | 3 | 1 | 172 | 386 | 556 | 2.52e-38 | 137 |
| Msa0920830 | MtrunA17_Chr2g0319071 | 39.181 | 171 | 101 | 3 | 1 | 170 | 319 | 487 | 2.90e-38 | 136 |
| Msa0920830 | MtrunA17_Chr2g0319051 | 38.728 | 173 | 103 | 3 | 1 | 172 | 344 | 514 | 2.61e-37 | 134 |
| Msa0920830 | MtrunA17_Chr3g0082711 | 48.276 | 116 | 43 | 1 | 57 | 172 | 1 | 99 | 1.90e-33 | 114 |
| Msa0920830 | MtrunA17_Chr2g0319081 | 38.150 | 173 | 93 | 4 | 1 | 172 | 268 | 427 | 7.51e-32 | 118 |
| Msa0920830 | MtrunA17_Chr4g0048921 | 30.058 | 173 | 116 | 2 | 1 | 170 | 399 | 569 | 5.26e-21 | 89.0 |
| Msa0920830 | MtrunA17_Chr7g0217361 | 29.940 | 167 | 117 | 0 | 3 | 169 | 141 | 307 | 9.81e-21 | 86.7 |
| Msa0920830 | MtrunA17_Chr3g0108941 | 28.235 | 170 | 116 | 4 | 1 | 166 | 346 | 513 | 2.72e-17 | 78.2 |
| Msa0920830 | MtrunA17_Chr4g0023911 | 25.882 | 170 | 126 | 0 | 1 | 170 | 410 | 579 | 7.58e-17 | 77.0 |
| Msa0920830 | MtrunA17_Chr6g0477121 | 29.139 | 151 | 99 | 3 | 1 | 145 | 263 | 411 | 1.18e-16 | 76.3 |
| Msa0920830 | MtrunA17_Chr3g0105691 | 28.571 | 154 | 106 | 3 | 1 | 150 | 378 | 531 | 5.92e-16 | 74.3 |
| Msa0920830 | MtrunA17_Chr3g0108971 | 28.571 | 154 | 106 | 3 | 1 | 150 | 320 | 473 | 7.70e-16 | 74.3 |
| Msa0920830 | MtrunA17_Chr3g0108991 | 28.571 | 154 | 106 | 3 | 1 | 150 | 345 | 498 | 9.14e-16 | 73.9 |
| Msa0920830 | MtrunA17_Chr3g0108951 | 28.571 | 154 | 106 | 3 | 1 | 150 | 345 | 498 | 9.14e-16 | 73.9 |
| Msa0920830 | MtrunA17_Chr3g0109031 | 29.139 | 151 | 99 | 3 | 1 | 145 | 345 | 493 | 1.51e-15 | 73.2 |
| Msa0920830 | MtrunA17_Chr3g0109001 | 29.139 | 151 | 99 | 3 | 1 | 145 | 346 | 494 | 1.60e-15 | 73.2 |
| Msa0920830 | MtrunA17_Chr3g0108981 | 29.139 | 151 | 99 | 3 | 1 | 145 | 321 | 469 | 1.85e-15 | 73.2 |
| Msa0920830 | MtrunA17_Chr3g0108961 | 29.139 | 151 | 99 | 3 | 1 | 145 | 321 | 469 | 1.85e-15 | 73.2 |
| Msa0920830 | MtrunA17_Chr4g0048911 | 26.036 | 169 | 117 | 3 | 1 | 164 | 391 | 556 | 2.34e-15 | 72.8 |
| Msa0920830 | MtrunA17_Chr3g0099031 | 30.000 | 170 | 113 | 4 | 1 | 166 | 345 | 512 | 2.67e-15 | 72.8 |
| Msa0920830 | MtrunA17_Chr3g0109011 | 29.139 | 151 | 99 | 3 | 1 | 145 | 320 | 468 | 2.77e-15 | 72.4 |
| Msa0920830 | MtrunA17_Chr6g0477111 | 27.950 | 161 | 108 | 3 | 1 | 155 | 320 | 478 | 2.93e-15 | 72.4 |
| Msa0920830 | MtrunA17_Chr2g0280581 | 27.746 | 173 | 112 | 5 | 1 | 163 | 349 | 518 | 1.05e-14 | 70.9 |
| Msa0920830 | MtrunA17_Chr3g0109021 | 28.477 | 151 | 100 | 3 | 1 | 145 | 345 | 493 | 1.28e-14 | 70.5 |
| Msa0920830 | MtrunA17_Chr2g0323151 | 25.490 | 153 | 112 | 2 | 1 | 152 | 311 | 462 | 1.43e-14 | 70.5 |
| Msa0920830 | MtrunA17_Chr2g0310401 | 26.190 | 168 | 123 | 1 | 3 | 170 | 264 | 430 | 7.27e-14 | 68.6 |
| Msa0920830 | MtrunA17_Chr2g0310331 | 25.595 | 168 | 124 | 1 | 3 | 170 | 418 | 584 | 2.33e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0920830 | AT5G23960.1 | 40.116 | 172 | 102 | 1 | 1 | 172 | 377 | 547 | 4.70e-41 | 145 |
| Msa0920830 | AT5G23960.2 | 40.116 | 172 | 102 | 1 | 1 | 172 | 375 | 545 | 5.94e-41 | 144 |
| Msa0920830 | AT1G70080.1 | 34.682 | 173 | 112 | 1 | 1 | 172 | 439 | 611 | 1.00e-29 | 114 |
| Msa0920830 | AT5G48110.1 | 31.953 | 169 | 112 | 3 | 4 | 172 | 174 | 339 | 1.25e-29 | 111 |
| Msa0920830 | AT4G13300.1 | 31.176 | 170 | 116 | 1 | 4 | 172 | 385 | 554 | 7.69e-28 | 108 |
| Msa0920830 | AT1G61680.1 | 35.583 | 163 | 104 | 1 | 1 | 162 | 407 | 569 | 9.27e-28 | 108 |
| Msa0920830 | AT1G61680.2 | 35.583 | 163 | 104 | 1 | 1 | 162 | 400 | 562 | 9.91e-28 | 108 |
| Msa0920830 | AT4G20200.1 | 31.361 | 169 | 114 | 2 | 5 | 172 | 437 | 604 | 2.60e-27 | 107 |
| Msa0920830 | AT4G13280.2 | 31.361 | 169 | 115 | 1 | 5 | 172 | 386 | 554 | 3.21e-27 | 107 |
| Msa0920830 | AT3G29410.2 | 29.586 | 169 | 119 | 0 | 4 | 172 | 330 | 498 | 4.53e-27 | 106 |
| Msa0920830 | AT3G29410.1 | 29.586 | 169 | 119 | 0 | 4 | 172 | 435 | 603 | 6.37e-27 | 106 |
| Msa0920830 | AT3G32030.1 | 28.902 | 173 | 122 | 1 | 1 | 172 | 432 | 604 | 1.34e-26 | 105 |
| Msa0920830 | AT3G14520.1 | 30.233 | 172 | 111 | 3 | 6 | 172 | 437 | 604 | 8.60e-26 | 103 |
| Msa0920830 | AT5G44630.1 | 30.723 | 166 | 115 | 0 | 5 | 170 | 390 | 555 | 1.10e-25 | 102 |
| Msa0920830 | AT1G33750.1 | 28.402 | 169 | 121 | 0 | 4 | 172 | 435 | 603 | 1.42e-25 | 102 |
| Msa0920830 | AT3G14490.1 | 32.941 | 170 | 112 | 2 | 4 | 172 | 433 | 601 | 3.66e-24 | 98.6 |
| Msa0920830 | AT1G31950.3 | 29.310 | 174 | 114 | 3 | 4 | 172 | 438 | 607 | 1.20e-23 | 97.1 |
| Msa0920830 | AT1G31950.1 | 29.310 | 174 | 114 | 3 | 4 | 172 | 437 | 606 | 1.21e-23 | 97.1 |
| Msa0920830 | AT4G20210.1 | 26.627 | 169 | 124 | 0 | 4 | 172 | 432 | 600 | 1.63e-23 | 96.7 |
| Msa0920830 | AT3G14540.1 | 29.070 | 172 | 113 | 3 | 6 | 172 | 434 | 601 | 1.71e-23 | 96.7 |
| Msa0920830 | AT3G29190.1 | 28.488 | 172 | 115 | 2 | 5 | 172 | 434 | 601 | 4.25e-23 | 95.5 |
| Msa0920830 | AT1G48800.1 | 27.273 | 165 | 120 | 0 | 4 | 168 | 438 | 602 | 1.48e-22 | 94.0 |
| Msa0920830 | AT4G20230.2 | 28.313 | 166 | 118 | 1 | 4 | 168 | 448 | 613 | 8.77e-22 | 91.7 |
| Msa0920830 | AT4G20230.1 | 28.313 | 166 | 118 | 1 | 4 | 168 | 436 | 601 | 9.23e-22 | 91.7 |
| Msa0920830 | AT4G15870.1 | 27.381 | 168 | 121 | 1 | 6 | 172 | 431 | 598 | 1.68e-20 | 88.2 |
| Msa0920830 | AT4G13280.1 | 33.588 | 131 | 86 | 1 | 43 | 172 | 394 | 524 | 4.15e-20 | 86.7 |
| Msa0920830 | AT2G23230.2 | 29.091 | 165 | 116 | 1 | 4 | 167 | 431 | 595 | 6.97e-20 | 86.3 |
| Msa0920830 | AT2G23230.1 | 29.091 | 165 | 116 | 1 | 4 | 167 | 426 | 590 | 7.30e-20 | 86.3 |
| Msa0920830 | AT1G66020.1 | 27.811 | 169 | 122 | 0 | 4 | 172 | 430 | 598 | 4.86e-19 | 84.0 |
| Msa0920830 | AT3G29110.1 | 28.144 | 167 | 120 | 0 | 4 | 170 | 429 | 595 | 3.30e-18 | 81.3 |
| Msa0920830 | AT1G48820.1 | 24.540 | 163 | 122 | 1 | 4 | 165 | 395 | 557 | 7.34e-17 | 77.4 |
| Msa0920830 | AT3G25810.1 | 26.966 | 178 | 124 | 4 | 1 | 172 | 420 | 597 | 1.29e-14 | 71.2 |
| Msa0920830 | AT4G16730.1 | 26.012 | 173 | 125 | 2 | 1 | 170 | 365 | 537 | 1.39e-14 | 70.9 |
| Msa0920830 | AT4G16730.2 | 25.714 | 175 | 127 | 2 | 1 | 172 | 319 | 493 | 1.55e-14 | 70.9 |
| Msa0920830 | AT2G24210.1 | 23.295 | 176 | 131 | 3 | 1 | 172 | 415 | 590 | 3.77e-12 | 63.9 |
| Msa0920830 | AT3G25820.1 | 25.843 | 178 | 125 | 4 | 1 | 172 | 418 | 594 | 6.18e-11 | 60.5 |
| Msa0920830 | AT3G25830.1 | 25.843 | 178 | 125 | 4 | 1 | 172 | 418 | 594 | 6.18e-11 | 60.5 |
Find 29 sgRNAs with CRISPR-Local
Find 30 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTATACATTGCAGGCTT+AGG | 0.276774 | 6_2:+56428171 | Msa0920830:CDS |
| TGAGGGAATATGATATGAAT+AGG | 0.340079 | 6_2:+56428373 | Msa0920830:CDS |
| ATGCTGCTGCTATACATTGC+AGG | 0.354080 | 6_2:+56428165 | Msa0920830:CDS |
| CGTACTTAGAATGTTATATG+AGG | 0.388941 | 6_2:+56428355 | Msa0920830:CDS |
| CGACAAAAGACATCTTTGAT+TGG | 0.390521 | 6_2:+56428117 | Msa0920830:CDS |
| TGCATGTACTCCTCTGTTGT+TGG | 0.418606 | 6_2:-56428026 | None:intergenic |
| ATAAATACTCAAATTTCTAC+AGG | 0.441751 | 6_2:-56428606 | None:intergenic |
| GACAAAAGACATCTTTGATT+GGG | 0.442878 | 6_2:+56428118 | Msa0920830:CDS |
| AAAAGAAAATTGACAACGCT+TGG | 0.444020 | 6_2:+56428418 | Msa0920830:CDS |
| TGCTATACATTGCAGGCTTA+GGG | 0.448464 | 6_2:+56428172 | Msa0920830:CDS |
| TACGACTTCTTACATTGGAA+TGG | 0.454510 | 6_2:+56428085 | Msa0920830:CDS |
| ATAGTTAGCATTCAGCCATC+TGG | 0.458951 | 6_2:-56428000 | None:intergenic |
| ACGACTTCTTACATTGGAAT+GGG | 0.460983 | 6_2:+56428086 | Msa0920830:CDS |
| GAGGGAATATGATATGAATA+GGG | 0.475500 | 6_2:+56428374 | Msa0920830:CDS |
| CGCTTGGAAAGATATAAATC+AGG | 0.490061 | 6_2:+56428434 | Msa0920830:CDS |
| TTGAGAACACACGTCAGAAT+AGG | 0.502783 | 6_2:-56428486 | None:intergenic |
| TAAGAAGTCGTAGCCAACAC+TGG | 0.522936 | 6_2:-56428074 | None:intergenic |
| AAACAGTTTGAGCAGAAAAG+AGG | 0.539017 | 6_2:+56428321 | Msa0920830:intron |
| CTTATATGAGTGAGGCCAGA+TGG | 0.549142 | 6_2:+56427985 | None:intergenic |
| ATAGGTAACAGAACTTCAGT+TGG | 0.561871 | 6_2:-56428468 | None:intergenic |
| ATCAAGTGGTTACCCAGTGT+TGG | 0.570889 | 6_2:+56428061 | Msa0920830:CDS |
| GTACTTAGAATGTTATATGA+GGG | 0.573263 | 6_2:+56428356 | Msa0920830:CDS |
| TTGGCTACGACTTCTTACAT+TGG | 0.586299 | 6_2:+56428080 | Msa0920830:CDS |
| CACATATCAACAATATCAAG+TGG | 0.594145 | 6_2:+56428047 | Msa0920830:CDS |
| GATAACTACACACACTCTGA+CGG | 0.610210 | 6_2:+56428546 | Msa0920830:CDS |
| GGATGAAATTGTGTCAAGCA+AGG | 0.613036 | 6_2:+56428193 | Msa0920830:CDS |
| AAGAAGTCGTAGCCAACACT+GGG | 0.613680 | 6_2:-56428073 | None:intergenic |
| AATCCAAGCTTATATGAGTG+AGG | 0.644710 | 6_2:+56427977 | None:intergenic |
| TAACTATATACCAACAACAG+AGG | 0.703519 | 6_2:+56428016 | Msa0920830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GTACTTAGAATGTTATATGA+GGG | + | chr6_2:56428356-56428375 | Msa0920830:CDS | 25.0% |
| TAACTATATACCAACAACAG+AGG | + | chr6_2:56428016-56428035 | Msa0920830:CDS | 30.0% | |
| CACATATCAACAATATCAAG+TGG | + | chr6_2:56428047-56428066 | Msa0920830:CDS | 30.0% | |
| GACAAAAGACATCTTTGATT+GGG | + | chr6_2:56428118-56428137 | Msa0920830:CDS | 30.0% | |
| CGTACTTAGAATGTTATATG+AGG | + | chr6_2:56428355-56428374 | Msa0920830:CDS | 30.0% | |
| TGAGGGAATATGATATGAAT+AGG | + | chr6_2:56428373-56428392 | Msa0920830:CDS | 30.0% | |
| GAGGGAATATGATATGAATA+GGG | + | chr6_2:56428374-56428393 | Msa0920830:CDS | 30.0% | |
| ! | TTTCTTTTGGCATTCTTGAA+TGG | - | chr6_2:56428406-56428425 | None:intergenic | 30.0% |
| !! | AAGCGTTGTCAATTTTCTTT+TGG | - | chr6_2:56428419-56428438 | None:intergenic | 30.0% |
| AAAAGAAAATTGACAACGCT+TGG | + | chr6_2:56428418-56428437 | Msa0920830:CDS | 30.0% | |
| TACGACTTCTTACATTGGAA+TGG | + | chr6_2:56428085-56428104 | Msa0920830:CDS | 35.0% | |
| ACGACTTCTTACATTGGAAT+GGG | + | chr6_2:56428086-56428105 | Msa0920830:CDS | 35.0% | |
| CGACAAAAGACATCTTTGAT+TGG | + | chr6_2:56428117-56428136 | Msa0920830:CDS | 35.0% | |
| ! | GCAGCAGCATTAACAATTTT+TGG | - | chr6_2:56428155-56428174 | None:intergenic | 35.0% |
| AAACAGTTTGAGCAGAAAAG+AGG | + | chr6_2:56428321-56428340 | Msa0920830:intron | 35.0% | |
| CGCTTGGAAAGATATAAATC+AGG | + | chr6_2:56428434-56428453 | Msa0920830:CDS | 35.0% | |
| ATAGGTAACAGAACTTCAGT+TGG | - | chr6_2:56428471-56428490 | None:intergenic | 35.0% | |
| ATAGTTAGCATTCAGCCATC+TGG | - | chr6_2:56428003-56428022 | None:intergenic | 40.0% | |
| TTGGCTACGACTTCTTACAT+TGG | + | chr6_2:56428080-56428099 | Msa0920830:CDS | 40.0% | |
| TGCTATACATTGCAGGCTTA+GGG | + | chr6_2:56428172-56428191 | Msa0920830:CDS | 40.0% | |
| GGATGAAATTGTGTCAAGCA+AGG | + | chr6_2:56428193-56428212 | Msa0920830:CDS | 40.0% | |
| TTGAGAACACACGTCAGAAT+AGG | - | chr6_2:56428489-56428508 | None:intergenic | 40.0% | |
| !! | CAATCTCTCGCGTTTTATTG+AGG | + | chr6_2:56428506-56428525 | Msa0920830:CDS | 40.0% |
| GATAACTACACACACTCTGA+CGG | + | chr6_2:56428546-56428565 | Msa0920830:CDS | 40.0% | |
| TGCATGTACTCCTCTGTTGT+TGG | - | chr6_2:56428029-56428048 | None:intergenic | 45.0% | |
| ATCAAGTGGTTACCCAGTGT+TGG | + | chr6_2:56428061-56428080 | Msa0920830:CDS | 45.0% | |
| AAGAAGTCGTAGCCAACACT+GGG | - | chr6_2:56428076-56428095 | None:intergenic | 45.0% | |
| TAAGAAGTCGTAGCCAACAC+TGG | - | chr6_2:56428077-56428096 | None:intergenic | 45.0% | |
| ATGCTGCTGCTATACATTGC+AGG | + | chr6_2:56428165-56428184 | Msa0920830:CDS | 45.0% | |
| CTGCTATACATTGCAGGCTT+AGG | + | chr6_2:56428171-56428190 | Msa0920830:CDS | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 56427990 | 56428620 | 56427990 | ID=Msa0920830;Name=Msa0920830 |
| chr6_2 | mRNA | 56427990 | 56428620 | 56427990 | ID=Msa0920830-mRNA-1;Parent=Msa0920830;Name=Msa0920830-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|172 |
| chr6_2 | exon | 56427990 | 56428214 | 56427990 | ID=Msa0920830-mRNA-1:exon:8461;Parent=Msa0920830-mRNA-1 |
| chr6_2 | exon | 56428327 | 56428620 | 56428327 | ID=Msa0920830-mRNA-1:exon:8462;Parent=Msa0920830-mRNA-1 |
| chr6_2 | CDS | 56427990 | 56428214 | 56427990 | ID=Msa0920830-mRNA-1:cds;Parent=Msa0920830-mRNA-1 |
| chr6_2 | CDS | 56428327 | 56428620 | 56428327 | ID=Msa0920830-mRNA-1:cds;Parent=Msa0920830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
