Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1037780 | XP_024625412.1 | 97.486 | 358 | 9 | 0 | 1 | 358 | 8 | 365 | 0.0 | 707 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1037780 | sp|Q8RXU4|THA1_ARATH | 73.352 | 349 | 93 | 0 | 1 | 349 | 1 | 349 | 0.0 | 547 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1037780 | A0A072U4C8 | 97.486 | 358 | 9 | 0 | 1 | 358 | 1 | 358 | 0.0 | 707 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010890 | Msa1037780 | 0.848158 | 7.324561e-60 | -8.615850e-47 |
| Msa0028620 | Msa1037780 | 0.827885 | 1.221871e-54 | -8.615850e-47 |
| Msa0044260 | Msa1037780 | 0.806881 | 6.632186e-50 | -8.615850e-47 |
| Msa0045790 | Msa1037780 | 0.801995 | 6.918871e-49 | -8.615850e-47 |
| Msa0077400 | Msa1037780 | 0.804265 | 2.347085e-49 | -8.615850e-47 |
| Msa0080090 | Msa1037780 | 0.808951 | 2.405632e-50 | -8.615850e-47 |
| Msa0099210 | Msa1037780 | 0.803953 | 2.725615e-49 | -8.615850e-47 |
| Msa0103770 | Msa1037780 | 0.803696 | 3.081329e-49 | -8.615850e-47 |
| Msa0623070 | Msa1037780 | 0.806089 | 9.744466e-50 | -8.615850e-47 |
| Msa0625190 | Msa1037780 | 0.853192 | 2.810513e-61 | -8.615850e-47 |
| Msa0625720 | Msa1037780 | 0.807066 | 6.060282e-50 | -8.615850e-47 |
| Msa0633700 | Msa1037780 | 0.815151 | 1.070853e-51 | -8.615850e-47 |
| Msa0659120 | Msa1037780 | 0.801246 | 9.856867e-49 | -8.615850e-47 |
| Msa0661650 | Msa1037780 | 0.845988 | 2.880576e-59 | -8.615850e-47 |
| Msa0681250 | Msa1037780 | 0.843391 | 1.441940e-58 | -8.615850e-47 |
| Msa0681270 | Msa1037780 | 0.830779 | 2.422952e-55 | -8.615850e-47 |
| Msa0685900 | Msa1037780 | 0.835842 | 1.325830e-56 | -8.615850e-47 |
| Msa0701830 | Msa1037780 | 0.833230 | 6.009975e-56 | -8.615850e-47 |
| Msa0703360 | Msa1037780 | 0.817325 | 3.496017e-52 | -8.615850e-47 |
| Msa0707250 | Msa1037780 | 0.806066 | 9.850884e-50 | -8.615850e-47 |
| Msa0709270 | Msa1037780 | 0.820208 | 7.745687e-53 | -8.615850e-47 |
| Msa0717890 | Msa1037780 | 0.806329 | 8.671580e-50 | -8.615850e-47 |
| Msa0753720 | Msa1037780 | 0.815781 | 7.755181e-52 | -8.615850e-47 |
| Msa0766630 | Msa1037780 | 0.805931 | 1.051846e-49 | -8.615850e-47 |
| Msa0787870 | Msa1037780 | 0.809700 | 1.662487e-50 | -8.615850e-47 |
| Msa0792540 | Msa1037780 | 0.800213 | 1.601255e-48 | -8.615850e-47 |
| Msa0817460 | Msa1037780 | 0.813326 | 2.709059e-51 | -8.615850e-47 |
| Msa0828240 | Msa1037780 | 0.811080 | 8.372096e-51 | -8.615850e-47 |
| Msa0142220 | Msa1037780 | 0.805591 | 1.239898e-49 | -8.615850e-47 |
| Msa0172080 | Msa1037780 | 0.811980 | 5.335127e-51 | -8.615850e-47 |
| Msa0206010 | Msa1037780 | 0.808298 | 3.317787e-50 | -8.615850e-47 |
| Msa0225100 | Msa1037780 | 0.806521 | 7.900496e-50 | -8.615850e-47 |
| Msa0225220 | Msa1037780 | 0.805621 | 1.221680e-49 | -8.615850e-47 |
| Msa0227340 | Msa1037780 | 0.803449 | 3.467893e-49 | -8.615850e-47 |
| Msa0367870 | Msa1037780 | 0.822803 | 1.948050e-53 | -8.615850e-47 |
| Msa0376350 | Msa1037780 | 0.801652 | 8.140175e-49 | -8.615850e-47 |
| Msa0386090 | Msa1037780 | 0.829545 | 4.847949e-55 | -8.615850e-47 |
| Msa0403640 | Msa1037780 | 0.802717 | 4.914518e-49 | -8.615850e-47 |
| Msa0411390 | Msa1037780 | 0.822611 | 2.159093e-53 | -8.615850e-47 |
| Msa0424790 | Msa1037780 | 0.806784 | 6.952712e-50 | -8.615850e-47 |
| Msa0428080 | Msa1037780 | 0.806129 | 9.555986e-50 | -8.615850e-47 |
| Msa0440400 | Msa1037780 | 0.840823 | 6.892439e-58 | -8.615850e-47 |
| Msa0455760 | Msa1037780 | 0.817899 | 2.595966e-52 | -8.615850e-47 |
| Msa0989360 | Msa1037780 | 0.800569 | 1.355589e-48 | -8.615850e-47 |
| Msa0999290 | Msa1037780 | 0.837888 | 3.985413e-57 | -8.615850e-47 |
| Msa0999680 | Msa1037780 | 0.826813 | 2.207284e-54 | -8.615850e-47 |
| Msa1019000 | Msa1037780 | 0.819496 | 1.126758e-52 | -8.615850e-47 |
| Msa1019150 | Msa1037780 | 0.840712 | 7.370154e-58 | -8.615850e-47 |
| Msa1030810 | Msa1037780 | 0.808696 | 2.728596e-50 | -8.615850e-47 |
| Msa1037780 | Msa1054990 | 0.815088 | 1.106039e-51 | -8.615850e-47 |
| Msa1037780 | Msa1066670 | 0.832124 | 1.130375e-55 | -8.615850e-47 |
| Msa1037780 | Msa1075650 | 0.844860 | 5.819622e-59 | -8.615850e-47 |
| Msa1037780 | Msa1081330 | 0.824147 | 9.449155e-54 | -8.615850e-47 |
| Msa1037780 | Msa1082500 | 0.801109 | 1.051533e-48 | -8.615850e-47 |
| Msa1037780 | Msa1083840 | 0.829648 | 4.576258e-55 | -8.615850e-47 |
| Msa1037780 | Msa1089940 | 0.847172 | 1.368185e-59 | -8.615850e-47 |
| Msa1037780 | Msa1100050 | 0.829309 | 5.531482e-55 | -8.615850e-47 |
| Msa1037780 | Msa1101090 | 0.814401 | 1.569794e-51 | -8.615850e-47 |
| Msa1037780 | Msa1106510 | 0.824061 | 9.900319e-54 | -8.615850e-47 |
| Msa1037780 | Msa1119940 | 0.818913 | 1.529669e-52 | -8.615850e-47 |
| Msa1037780 | Msa1121490 | 0.807942 | 3.950532e-50 | -8.615850e-47 |
| Msa1037780 | Msa1129550 | 0.867271 | 1.547977e-65 | -8.615850e-47 |
| Msa1037780 | Msa1129730 | 0.872724 | 2.551970e-67 | -8.615850e-47 |
| Msa1037780 | Msa1131050 | 0.818217 | 2.199184e-52 | -8.615850e-47 |
| Msa1037780 | Msa1135470 | 0.804632 | 1.968448e-49 | -8.615850e-47 |
| Msa1037780 | Msa1141910 | 0.814989 | 1.163346e-51 | -8.615850e-47 |
| Msa1037780 | Msa1147740 | 0.853698 | 2.012608e-61 | -8.615850e-47 |
| Msa1037780 | Msa1152440 | 0.806302 | 8.788951e-50 | -8.615850e-47 |
| Msa1037780 | Msa1170940 | 0.812377 | 4.371997e-51 | -8.615850e-47 |
| Msa1037780 | Msa1190870 | 0.814866 | 1.238728e-51 | -8.615850e-47 |
| Msa1037780 | Msa1190920 | 0.828303 | 9.689929e-55 | -8.615850e-47 |
| Msa1037780 | Msa1207220 | 0.813219 | 2.859533e-51 | -8.615850e-47 |
| Msa1037780 | Msa1225130 | 0.825627 | 4.228954e-54 | -8.615850e-47 |
| Msa1037780 | Msa1226460 | 0.817159 | 3.809907e-52 | -8.615850e-47 |
| Msa1037780 | Msa1269480 | 0.816154 | 6.399839e-52 | -8.615850e-47 |
| Msa1037780 | Msa1283810 | 0.827999 | 1.146837e-54 | -8.615850e-47 |
| Msa1037780 | Msa1284680 | 0.811764 | 5.947763e-51 | -8.615850e-47 |
| Msa1037780 | Msa1299960 | 0.801328 | 9.483483e-49 | -8.615850e-47 |
| Msa1037780 | Msa1304890 | -0.807808 | 4.218366e-50 | -8.615850e-47 |
| Msa1037780 | Msa1313280 | 0.824148 | 9.442722e-54 | -8.615850e-47 |
| Msa1037780 | Msa1331000 | 0.824120 | 9.585251e-54 | -8.615850e-47 |
| Msa1037780 | Msa1353470 | 0.808073 | 3.703894e-50 | -8.615850e-47 |
| Msa1037780 | Msa1372760 | 0.807605 | 4.658248e-50 | -8.615850e-47 |
| Msa1037780 | Msa1377310 | 0.805072 | 1.592286e-49 | -8.615850e-47 |
| Msa1037780 | Msa1378040 | 0.802471 | 5.523614e-49 | -8.615850e-47 |
| Msa1037780 | Msa1388930 | 0.825894 | 3.653559e-54 | -8.615850e-47 |
| Msa1037780 | Msa1392240 | 0.829308 | 5.535282e-55 | -8.615850e-47 |
| Msa1037780 | Msa1394380 | 0.806687 | 7.287635e-50 | -8.615850e-47 |
| Msa1037780 | Msa1397740 | 0.838808 | 2.307420e-57 | -8.615850e-47 |
| Msa1037780 | Msa1414520 | 0.835448 | 1.668649e-56 | -8.615850e-47 |
| Msa1037780 | Msa1422420 | 0.801992 | 6.931254e-49 | -8.615850e-47 |
| Msa1037780 | Msa1425090 | 0.819128 | 1.366527e-52 | -8.615850e-47 |
| Msa1037780 | Msa1435160 | 0.839031 | 2.020376e-57 | -8.615850e-47 |
| Msa1037780 | Msa1435270 | 0.813870 | 2.056654e-51 | -8.615850e-47 |
| Msa1037780 | Msa1440560 | 0.849016 | 4.237058e-60 | -8.615850e-47 |
| Msa1037780 | Msa1448640 | 0.805254 | 1.459012e-49 | -8.615850e-47 |
| Msa1037780 | Msa1453320 | 0.838517 | 2.743409e-57 | -8.615850e-47 |
| Msa1037780 | Msa1458680 | 0.821987 | 3.014287e-53 | -8.615850e-47 |
| Msa1037780 | Msa1459100 | 0.815023 | 1.142951e-51 | -8.615850e-47 |
| Msa1037780 | Msa1463900 | 0.809082 | 2.255209e-50 | -8.615850e-47 |
| Msa0243480 | Msa1037780 | 0.822001 | 2.992093e-53 | -8.615850e-47 |
| Msa0264830 | Msa1037780 | 0.822756 | 1.997492e-53 | -8.615850e-47 |
| Msa0266180 | Msa1037780 | 0.800261 | 1.565933e-48 | -8.615850e-47 |
| Msa0281930 | Msa1037780 | 0.803874 | 2.829970e-49 | -8.615850e-47 |
| Msa0287740 | Msa1037780 | 0.803556 | 3.294732e-49 | -8.615850e-47 |
| Msa0287870 | Msa1037780 | 0.821017 | 5.048509e-53 | -8.615850e-47 |
| Msa0290720 | Msa1037780 | 0.841974 | 3.430170e-58 | -8.615850e-47 |
| Msa0302870 | Msa1037780 | 0.814761 | 1.306776e-51 | -8.615850e-47 |
| Msa0307540 | Msa1037780 | 0.803732 | 3.028813e-49 | -8.615850e-47 |
| Msa0321080 | Msa1037780 | 0.844393 | 7.775309e-59 | -8.615850e-47 |
| Msa0326110 | Msa1037780 | 0.802211 | 6.248034e-49 | -8.615850e-47 |
| Msa0326940 | Msa1037780 | 0.832152 | 1.112942e-55 | -8.615850e-47 |
| Msa0340340 | Msa1037780 | 0.817434 | 3.304555e-52 | -8.615850e-47 |
| Msa0363790 | Msa1037780 | 0.824336 | 8.531039e-54 | -8.615850e-47 |
| Msa0484650 | Msa1037780 | 0.801861 | 7.373138e-49 | -8.615850e-47 |
| Msa0486690 | Msa1037780 | 0.833782 | 4.376699e-56 | -8.615850e-47 |
| Msa0516170 | Msa1037780 | 0.813554 | 2.414140e-51 | -8.615850e-47 |
| Msa0518380 | Msa1037780 | 0.807356 | 5.261757e-50 | -8.615850e-47 |
| Msa0528950 | Msa1037780 | 0.803298 | 3.726365e-49 | -8.615850e-47 |
| Msa0529890 | Msa1037780 | 0.806103 | 9.679265e-50 | -8.615850e-47 |
| Msa0531180 | Msa1037780 | 0.818714 | 1.697442e-52 | -8.615850e-47 |
| Msa0545210 | Msa1037780 | 0.821081 | 4.879442e-53 | -8.615850e-47 |
| Msa0548170 | Msa1037780 | 0.801391 | 9.206022e-49 | -8.615850e-47 |
| Msa0571630 | Msa1037780 | 0.806469 | 8.102603e-50 | -8.615850e-47 |
| Msa0584450 | Msa1037780 | 0.800669 | 1.293001e-48 | -8.615850e-47 |
| Msa0585560 | Msa1037780 | 0.802718 | 4.910698e-49 | -8.615850e-47 |
| Msa0870380 | Msa1037780 | 0.833397 | 5.460952e-56 | -8.615850e-47 |
| Msa0876930 | Msa1037780 | 0.805753 | 1.146428e-49 | -8.615850e-47 |
| Msa0899970 | Msa1037780 | 0.824861 | 6.418035e-54 | -8.615850e-47 |
| Msa0927310 | Msa1037780 | 0.841803 | 3.806826e-58 | -8.615850e-47 |
| Msa0936060 | Msa1037780 | 0.844201 | 8.755587e-59 | -8.615850e-47 |
| Msa0964730 | Msa1037780 | 0.811469 | 6.892446e-51 | -8.615850e-47 |
| Msa0965080 | Msa1037780 | 0.828943 | 6.787376e-55 | -8.615850e-47 |
| Msa0965290 | Msa1037780 | 0.828817 | 7.280972e-55 | -8.615850e-47 |
| Msa0969820 | Msa1037780 | 0.802040 | 6.775201e-49 | -8.615850e-47 |
| Msa0972960 | Msa1037780 | 0.826501 | 2.620980e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1037780 | MtrunA17_Chr7g0274621 | 97.486 | 358 | 9 | 0 | 1 | 358 | 1 | 358 | 0.0 | 707 |
| Msa1037780 | MtrunA17_Chr1g0190251 | 81.792 | 346 | 63 | 0 | 1 | 346 | 67 | 412 | 0.0 | 573 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1037780 | AT1G08630.2 | 73.352 | 349 | 93 | 0 | 1 | 349 | 1 | 349 | 0.0 | 547 |
| Msa1037780 | AT1G08630.3 | 73.352 | 349 | 93 | 0 | 1 | 349 | 1 | 349 | 0.0 | 547 |
| Msa1037780 | AT1G08630.1 | 73.352 | 349 | 93 | 0 | 1 | 349 | 1 | 349 | 0.0 | 547 |
| Msa1037780 | AT1G08630.4 | 73.352 | 349 | 93 | 0 | 1 | 349 | 1 | 349 | 0.0 | 547 |
| Msa1037780 | AT1G08630.6 | 73.352 | 349 | 93 | 0 | 1 | 349 | 1 | 349 | 0.0 | 547 |
| Msa1037780 | AT3G04520.3 | 74.419 | 344 | 88 | 0 | 4 | 347 | 8 | 351 | 0.0 | 534 |
| Msa1037780 | AT3G04520.1 | 74.419 | 344 | 88 | 0 | 4 | 347 | 8 | 351 | 0.0 | 534 |
| Msa1037780 | AT3G04520.2 | 74.419 | 344 | 87 | 1 | 4 | 347 | 8 | 350 | 0.0 | 529 |
| Msa1037780 | AT1G08630.5 | 71.347 | 349 | 86 | 1 | 1 | 349 | 1 | 335 | 0.0 | 521 |
| Msa1037780 | AT1G08630.7 | 73.333 | 330 | 88 | 0 | 20 | 349 | 1 | 330 | 0.0 | 518 |
Find 98 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGAACAATGAAGTGCTTTA+TGG | 0.169459 | 7_1:-74509934 | Msa1037780:three_prime_UTR |
| CTACAAAATACTTACAATAT+TGG | 0.205905 | 7_1:+74510622 | None:intergenic |
| TCATTATTTCTAACTGTTCT+TGG | 0.215838 | 7_1:+74512592 | None:intergenic |
| TTCAGTTGTGTGAATAAGTA+TGG | 0.256450 | 7_1:-74510041 | Msa1037780:three_prime_UTR |
| GCACATCGCTATCTGATATT+TGG | 0.274562 | 7_1:+74510264 | None:intergenic |
| TTTGTAACACAAATAAAATA+TGG | 0.289486 | 7_1:-74510005 | Msa1037780:three_prime_UTR |
| TTAAATCAAGCAGACCAATT+TGG | 0.289912 | 7_1:+74513581 | Msa1037790:intron |
| AACCACAAGGCTCATTTGTT+TGG | 0.308683 | 7_1:-74512500 | Msa1037780:CDS |
| ATTGAAATTGAAGAGAATTC+AGG | 0.311218 | 7_1:-74510504 | Msa1037780:CDS |
| GCCGGAGGACCAAATGAAAA+TGG | 0.327784 | 7_1:-74510118 | Msa1037780:CDS |
| GGATAAACAAGCTCCCCTTT+TGG | 0.339653 | 7_1:+74512523 | None:intergenic |
| CATATTCATATTTATGAGAA+TGG | 0.341156 | 7_1:-74512643 | Msa1037780:CDS |
| TCCAAGGACTTAGAAGAATA+TGG | 0.358787 | 7_1:-74510462 | Msa1037780:CDS |
| CAATGCATTTCAGTCCAAAT+TGG | 0.362325 | 7_1:-74513595 | Msa1037780:five_prime_UTR |
| CACCGGTGGTAGATGCCTTT+CGG | 0.379901 | 7_1:-74511957 | Msa1037780:CDS |
| GAAGAGATGGCAAAGATAAC+TGG | 0.383719 | 7_1:-74512772 | Msa1037780:CDS |
| AGTGAACAAGCACAGATATA+AGG | 0.384763 | 7_1:+74512707 | None:intergenic |
| GGATTGAAGCTTCACATTGA+TGG | 0.392047 | 7_1:-74511893 | Msa1037780:CDS |
| ATGTTGCAGCGTGCGGTTGC+CGG | 0.393302 | 7_1:-74510136 | Msa1037780:intron |
| GCCATATTCTTCTAAGTCCT+TGG | 0.397824 | 7_1:+74510461 | None:intergenic |
| AGAGGGAGTGAAGTAATTCT+TGG | 0.400194 | 7_1:-74512676 | Msa1037780:CDS |
| GTTTGCTTATCTAAAGGTAT+TGG | 0.427009 | 7_1:-74511262 | Msa1037780:CDS |
| TCCTTGGATAGCTTTGCTGC+TGG | 0.432710 | 7_1:+74510477 | None:intergenic |
| CTTTGTTTCTTTAGCAAAGT+GGG | 0.433429 | 7_1:-74509888 | Msa1037780:three_prime_UTR |
| AGGTTTAATTCATAATTTAT+CGG | 0.435889 | 7_1:-74509973 | Msa1037780:three_prime_UTR |
| CCAGTTGGATCTGTAATTGT+TGG | 0.446162 | 7_1:-74511235 | Msa1037780:CDS |
| ATAAAATATGGAGCATAGTA+AGG | 0.446419 | 7_1:-74509993 | Msa1037780:three_prime_UTR |
| TTTGTCCCATCAGGCACTAT+GGG | 0.452519 | 7_1:-74512733 | Msa1037780:CDS |
| GATTAGGTTTGCTTATCTAA+AGG | 0.460763 | 7_1:-74511268 | Msa1037780:intron |
| ATTTGTTTGGAAAATTCTCA+TGG | 0.463399 | 7_1:-74512487 | Msa1037780:CDS |
| TGTGTTACAAACAAAACAAA+AGG | 0.466316 | 7_1:+74510017 | None:intergenic |
| GAGGTCGATGATGATGTTCT+TGG | 0.472967 | 7_1:-74512823 | Msa1037780:CDS |
| ACAGTTAGAAATAATGAAGA+TGG | 0.487457 | 7_1:-74512586 | Msa1037780:CDS |
| TAACTAGGACAGTGGATCTT+CGG | 0.488854 | 7_1:-74512900 | Msa1037780:CDS |
| TGAAACAATGCGAGTTGCTA+TGG | 0.491610 | 7_1:-74512854 | Msa1037780:CDS |
| TACCTTGGTTATAAAGCTGT+TGG | 0.496036 | 7_1:+74511210 | None:intergenic |
| TGAAATCAAAGGACTGAGAG+TGG | 0.498538 | 7_1:-74510663 | Msa1037780:CDS |
| TCTTCTAAGCGTAAACAAGA+AGG | 0.503667 | 7_1:+74512793 | None:intergenic |
| AATGGAGGCATTGCAACCCT+TGG | 0.505718 | 7_1:-74512625 | Msa1037780:CDS |
| CTTGTTCACTGCGACATAAG+AGG | 0.507878 | 7_1:-74512694 | Msa1037780:CDS |
| GGAGGCATTGCAACCCTTGG+AGG | 0.509812 | 7_1:-74512622 | Msa1037780:CDS |
| GTTGAATATACAGAAAGAGT+TGG | 0.511468 | 7_1:-74511935 | Msa1037780:CDS |
| GGCATCCTTCTCATGCCAAT+CGG | 0.513035 | 7_1:-74510441 | Msa1037780:CDS |
| CGCTATCTGATATTTGGTGG+TGG | 0.515490 | 7_1:+74510270 | None:intergenic |
| CATGGATATTGATTTGATTG+AGG | 0.516490 | 7_1:-74512560 | Msa1037780:CDS |
| GCAACTCGCATTGTTTCAGT+TGG | 0.519214 | 7_1:+74512859 | None:intergenic |
| TTCTTGGATGTACACCTCCA+AGG | 0.519508 | 7_1:+74512608 | None:intergenic |
| CCAACAATTACAGATCCAAC+TGG | 0.520070 | 7_1:+74511235 | None:intergenic |
| CAAAATGGTAACTAGGACAG+TGG | 0.520303 | 7_1:-74512908 | Msa1037780:exon |
| CTGTCTCATTCCACCACCTA+AGG | 0.525977 | 7_1:+74511073 | None:intergenic |
| CTGCAATTAGAGATCCAAAA+GGG | 0.526811 | 7_1:-74512537 | Msa1037780:CDS |
| CACTTGGTGTTCCTGTGGAT+AGG | 0.527788 | 7_1:-74511736 | Msa1037780:CDS |
| AGAAGGCTCAGAAAGACCTT+AGG | 0.529362 | 7_1:-74511089 | Msa1037780:CDS |
| CATCGCTATCTGATATTTGG+TGG | 0.529995 | 7_1:+74510267 | None:intergenic |
| TCAGGCACTTGGTGTTCCTG+TGG | 0.542119 | 7_1:-74511741 | Msa1037780:intron |
| CTTAGGTGGTGGAATGAGAC+AGG | 0.543067 | 7_1:-74511072 | Msa1037780:CDS |
| TTGCAGACAAAATGGTAACT+AGG | 0.544552 | 7_1:-74512915 | Msa1037780:intron |
| TCTTGGATGTACACCTCCAA+GGG | 0.546880 | 7_1:+74512609 | None:intergenic |
| CTCAGAAAGACCTTAGGTGG+TGG | 0.554851 | 7_1:-74511083 | Msa1037780:CDS |
| CTCAATCAAATCAATATCCA+TGG | 0.555497 | 7_1:+74512561 | None:intergenic |
| TCTTTGTTTCTTTAGCAAAG+TGG | 0.556806 | 7_1:-74509889 | Msa1037780:three_prime_UTR |
| AAAGGTATTGGTGCTCCAGT+TGG | 0.559792 | 7_1:-74511250 | Msa1037780:CDS |
| AATATTGGTTTCCACAGAAG+AGG | 0.560041 | 7_1:+74510637 | None:intergenic |
| TTTACGCTTAGAAGAAGAGA+TGG | 0.562019 | 7_1:-74512785 | Msa1037780:CDS |
| GGTTCCCCATAGTGCCTGAT+GGG | 0.562284 | 7_1:+74512728 | None:intergenic |
| GATGGATTGAATGAAATCAA+AGG | 0.567749 | 7_1:-74510674 | Msa1037780:CDS |
| AACCGAAAGGCATCTACCAC+CGG | 0.573022 | 7_1:+74511955 | None:intergenic |
| TTGGACTGAAATGCATTGCA+TGG | 0.573672 | 7_1:+74513600 | Msa1037790:intron |
| AGGTTCCCCATAGTGCCTGA+TGG | 0.574535 | 7_1:+74512727 | None:intergenic |
| TCATGCCAATCGGATCATCA+AGG | 0.575646 | 7_1:-74510431 | Msa1037780:intron |
| AAACAAATGAGCCTTGTGGT+TGG | 0.579817 | 7_1:+74512502 | None:intergenic |
| AGCGTAAACAAGAAGGGTCG+CGG | 0.584966 | 7_1:+74512800 | None:intergenic |
| ATATACAGAAAGAGTTGGAG+AGG | 0.590867 | 7_1:-74511930 | Msa1037780:CDS |
| TTCCAACAGCTTTATAACCA+AGG | 0.590972 | 7_1:-74511212 | Msa1037780:intron |
| GCTGCAATTAGAGATCCAAA+AGG | 0.591600 | 7_1:-74512538 | Msa1037780:CDS |
| CTTCTAAGCGTAAACAAGAA+GGG | 0.596464 | 7_1:+74512794 | None:intergenic |
| GGAGAGGTTGCTAAGAAGCA+CGG | 0.596469 | 7_1:-74511914 | Msa1037780:CDS |
| CAAGACCTTGATGATCCGAT+TGG | 0.596889 | 7_1:+74510426 | None:intergenic |
| ATTCATATTTATGAGAATGG+AGG | 0.597452 | 7_1:-74512640 | Msa1037780:CDS |
| TTCCAAACAAATGAGCCTTG+TGG | 0.608620 | 7_1:+74512498 | None:intergenic |
| TTGTTCACTGCGACATAAGA+GGG | 0.608669 | 7_1:-74512693 | Msa1037780:CDS |
| TGTGGATAGGCTTGTTCGAG+CGG | 0.608773 | 7_1:-74511723 | Msa1037780:CDS |
| TCCAGCAGCAAAGCTATCCA+AGG | 0.609285 | 7_1:-74510478 | Msa1037780:CDS |
| AGGCTCAGAAAGACCTTAGG+TGG | 0.612425 | 7_1:-74511086 | Msa1037780:CDS |
| GAGAGTGGGTACCTCTTCTG+TGG | 0.616123 | 7_1:-74510648 | Msa1037780:CDS |
| TTTCCTGAATGCAGCACCGG+TGG | 0.617194 | 7_1:-74511971 | Msa1037780:intron |
| GAAATCAAAGGACTGAGAGT+GGG | 0.620156 | 7_1:-74510662 | Msa1037780:CDS |
| GCTCGAACAAGCCTATCCAC+AGG | 0.622305 | 7_1:+74511725 | None:intergenic |
| TGGACTGAAATGCATTGCAT+GGG | 0.623621 | 7_1:+74513601 | Msa1037790:intron |
| TTTCTGTATATTCAACCGAA+AGG | 0.632912 | 7_1:+74511942 | None:intergenic |
| ATGATCCGATTGGCATGAGA+AGG | 0.633762 | 7_1:+74510436 | None:intergenic |
| AAATAATGAAGATGGAACCA+TGG | 0.634516 | 7_1:-74512578 | Msa1037780:CDS |
| GGTGGTGGAATGAGACAGGT+CGG | 0.635750 | 7_1:-74511068 | Msa1037780:CDS |
| CAACAAGTGCAGCTGCACAA+AGG | 0.642170 | 7_1:+74511042 | None:intergenic |
| TTGTCCCATCAGGCACTATG+GGG | 0.644998 | 7_1:-74512732 | Msa1037780:CDS |
| AGCTTGTTTATCCAACCACA+AGG | 0.653076 | 7_1:-74512513 | Msa1037780:CDS |
| AGTTGCTATGGCAAACGCTG+AGG | 0.668418 | 7_1:-74512842 | Msa1037780:CDS |
| TGCAATTAGAGATCCAAAAG+GGG | 0.670578 | 7_1:-74512536 | Msa1037780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATACTAATAATAATAAGT+TGG | - | chr7_1:74510173-74510192 | Msa1037780:intron | 10.0% |
| !! | TTAACTTTACATTATTAAAA+AGG | + | chr7_1:74511501-74511520 | None:intergenic | 10.0% |
| !! | AATTACTTTAATAAAAGAAA+AGG | + | chr7_1:74513198-74513217 | None:intergenic | 10.0% |
| !!! | ACTAATTCATTTTATAACTA+AGG | - | chr7_1:74511445-74511464 | Msa1037780:intron | 15.0% |
| !! | CTTTGAATATATATATGATT+AGG | - | chr7_1:74512272-74512291 | Msa1037780:intron | 15.0% |
| !!! | TATATTTCTTTTCTTTTTCT+TGG | - | chr7_1:74513367-74513386 | Msa1037780:intron | 15.0% |
| !! | TTTGTAACACAAATAAAATA+TGG | - | chr7_1:74513551-74513570 | Msa1037780:five_prime_UTR | 15.0% |
| !! | AGGTTTAATTCATAATTTAT+CGG | - | chr7_1:74513583-74513602 | Msa1037780:five_prime_UTR | 15.0% |
| !! | AATTAGTTGGATATAGTTAA+AGG | - | chr7_1:74510134-74510153 | Msa1037780:intron | 20.0% |
| !!! | TTTTGTTATAAGCTTTAAGT+TGG | - | chr7_1:74510347-74510366 | Msa1037780:intron | 20.0% |
| !! | AAGACCTGAATATAATTTAA+AGG | - | chr7_1:74510508-74510527 | Msa1037780:CDS | 20.0% |
| !! | ACTACCTTTAAATTATATTC+AGG | + | chr7_1:74510515-74510534 | None:intergenic | 20.0% |
| !! | TGAATATAATTTAAAGGTAG+TGG | - | chr7_1:74510514-74510533 | Msa1037780:intron | 20.0% |
| !! | CATATTCATATTTATGAGAA+TGG | - | chr7_1:74510913-74510932 | Msa1037780:intron | 20.0% |
| !! | TGTGTAGAAAATGTAAATAA+TGG | + | chr7_1:74511337-74511356 | None:intergenic | 20.0% |
| !! | ATGTCAATACTTATTCTTAT+TGG | - | chr7_1:74512114-74512133 | Msa1037780:intron | 20.0% |
| !! | ATTACCAAATTCAAATCAAA+AGG | - | chr7_1:74512220-74512239 | Msa1037780:intron | 20.0% |
| !!! | ATAACCTTTTGATTTGAATT+TGG | + | chr7_1:74512227-74512246 | None:intergenic | 20.0% |
| !!! | GTATGTATATATGCTATTTT+AGG | - | chr7_1:74512442-74512461 | Msa1037780:intron | 20.0% |
| !!! | TTTTTGTGTCTTTATTTGAT+AGG | + | chr7_1:74512621-74512640 | None:intergenic | 20.0% |
| !!! | ATTATTATCAGTTTTGTGTT+TGG | + | chr7_1:74512648-74512667 | None:intergenic | 20.0% |
| !! | GTTAGAGGAAAAAATTTAAA+GGG | + | chr7_1:74512852-74512871 | None:intergenic | 20.0% |
| !! | AGTTAGAGGAAAAAATTTAA+AGG | + | chr7_1:74512853-74512872 | None:intergenic | 20.0% |
| !! | CTACAAAATACTTACAATAT+TGG | + | chr7_1:74512937-74512956 | None:intergenic | 20.0% |
| !! | CTTCAATTTCAATATATATC+TGG | + | chr7_1:74513045-74513064 | None:intergenic | 20.0% |
| ! | GTTAAAGGTAGTTTACAAAT+TGG | - | chr7_1:74510149-74510168 | Msa1037780:intron | 25.0% |
| !!! | TTTTTTTTTTAAACCGCACA+TGG | + | chr7_1:74510298-74510317 | None:intergenic | 25.0% |
| !! | TTTTCATAAGCTAAGAACTA+TGG | - | chr7_1:74510399-74510418 | Msa1037780:intron | 25.0% |
| !! | AATTGCTAACTTGATTTGAT+CGG | - | chr7_1:74510555-74510574 | Msa1037780:intron | 25.0% |
| ! | ATTCATATTTATGAGAATGG+AGG | - | chr7_1:74510916-74510935 | Msa1037780:intron | 25.0% |
| !!! | TCATTATTTCTAACTGTTCT+TGG | + | chr7_1:74510967-74510986 | None:intergenic | 25.0% |
| ! | ACAGTTAGAAATAATGAAGA+TGG | - | chr7_1:74510970-74510989 | Msa1037780:intron | 25.0% |
| ! | ATTTGTTTGGAAAATTCTCA+TGG | - | chr7_1:74511069-74511088 | Msa1037780:CDS | 25.0% |
| !!! | TAGTAATGTTTTGTTGGATA+CGG | - | chr7_1:74511125-74511144 | Msa1037780:intron | 25.0% |
| ! | ATATCGCTGAAATAATAGAA+AGG | - | chr7_1:74511172-74511191 | Msa1037780:intron | 25.0% |
| ! | AAAGTTAAGAATTCCTTCAA+TGG | - | chr7_1:74511513-74511532 | Msa1037780:intron | 25.0% |
| ! | ATAATATAGACAACCATTGA+AGG | + | chr7_1:74511529-74511548 | None:intergenic | 25.0% |
| !!! | ACAGAAAATTTTGGTTTTTC+AGG | - | chr7_1:74511797-74511816 | Msa1037780:intron | 25.0% |
| !! | TCTTTTACCTTCTCTTTTAT+TGG | - | chr7_1:74511880-74511899 | Msa1037780:CDS | 25.0% |
| ! | ATGTTCCATAGTTAGAAAAA+AGG | - | chr7_1:74511936-74511955 | Msa1037780:CDS | 25.0% |
| !!! | AACATCCTTTTTTCTAACTA+TGG | + | chr7_1:74511944-74511963 | None:intergenic | 25.0% |
| ! | TATTCAAAGTAATCACAAGT+TGG | + | chr7_1:74512261-74512280 | None:intergenic | 25.0% |
| !!! | ATAACGATTTTGAAATACCT+TGG | + | chr7_1:74512364-74512383 | None:intergenic | 25.0% |
| ! | TCATTTATAACCACATTTGT+TGG | - | chr7_1:74512688-74512707 | Msa1037780:CDS | 25.0% |
| ! | ATTTCATTCAATCCATCTAA+AGG | + | chr7_1:74512879-74512898 | None:intergenic | 25.0% |
| ! | ACTAGTATGAATGAAATGAA+TGG | + | chr7_1:74512963-74512982 | None:intergenic | 25.0% |
| ! | ATTGAAATTGAAGAGAATTC+AGG | - | chr7_1:74513052-74513071 | Msa1037780:intron | 25.0% |
| ! | GAAATATATACAGCAAAACA+AGG | + | chr7_1:74513355-74513374 | None:intergenic | 25.0% |
| ! | TGTGTTACAAACAAAACAAA+AGG | + | chr7_1:74513542-74513561 | None:intergenic | 25.0% |
| ! | ATAAAATATGGAGCATAGTA+AGG | - | chr7_1:74513563-74513582 | Msa1037780:five_prime_UTR | 25.0% |
| TTAAATCAAGCAGACCAATT+TGG | + | chr7_1:74509978-74509997 | None:intergenic | 30.0% | |
| !!! | TGTGTTACTTGCAATTTTGT+TGG | - | chr7_1:74510039-74510058 | Msa1037780:three_prime_UTR | 30.0% |
| ! | TGCAATTTTGTTGGAATACA+AGG | - | chr7_1:74510048-74510067 | Msa1037780:three_prime_UTR | 30.0% |
| AACGAACTAAGAAGTTTAAG+AGG | + | chr7_1:74510083-74510102 | None:intergenic | 30.0% | |
| TGATAGACTATGATACATCA+TGG | + | chr7_1:74510445-74510464 | None:intergenic | 30.0% | |
| ! | TGATCGGTTCTAGTTAAATT+TGG | - | chr7_1:74510571-74510590 | Msa1037780:intron | 30.0% |
| ! | GATCGGTTCTAGTTAAATTT+GGG | - | chr7_1:74510572-74510591 | Msa1037780:intron | 30.0% |
| CTAGTTAAATTTGGGAGAAT+TGG | - | chr7_1:74510580-74510599 | Msa1037780:intron | 30.0% | |
| !!! | TGTTTTAGTTGCAGACAAAA+TGG | - | chr7_1:74510633-74510652 | Msa1037780:intron | 30.0% |
| AAATAATGAAGATGGAACCA+TGG | - | chr7_1:74510978-74510997 | Msa1037780:intron | 30.0% | |
| CTCAATCAAATCAATATCCA+TGG | + | chr7_1:74510998-74511017 | None:intergenic | 30.0% | |
| !! | CATGGATATTGATTTGATTG+AGG | - | chr7_1:74510996-74511015 | Msa1037780:CDS | 30.0% |
| ! | TCACTCTAGTAATGTTTTGT+TGG | - | chr7_1:74511119-74511138 | Msa1037780:intron | 30.0% |
| GCTCATAGTTTACTGATAAA+TGG | - | chr7_1:74511147-74511166 | Msa1037780:intron | 30.0% | |
| AAGTACAGTAAAAACATGCT+AGG | + | chr7_1:74511314-74511333 | None:intergenic | 30.0% | |
| ! | TTTTATAGCCCTTCATTCAA+AGG | + | chr7_1:74511387-74511406 | None:intergenic | 30.0% |
| TTTCTGTATATTCAACCGAA+AGG | + | chr7_1:74511617-74511636 | None:intergenic | 30.0% | |
| GTTGAATATACAGAAAGAGT+TGG | - | chr7_1:74511621-74511640 | Msa1037780:intron | 30.0% | |
| GTTTATATGTACATGATAGC+AGG | + | chr7_1:74511769-74511788 | None:intergenic | 30.0% | |
| ! | CAACTCATGACAGAAAATTT+TGG | - | chr7_1:74511788-74511807 | Msa1037780:intron | 30.0% |
| ATCATGTCCAATAAAAGAGA+AGG | + | chr7_1:74511890-74511909 | None:intergenic | 30.0% | |
| ! | CTTTTATTGGACATGATTCT+TGG | - | chr7_1:74511893-74511912 | Msa1037780:CDS | 30.0% |
| TGAAATTGTGATATACTTGC+TGG | - | chr7_1:74511989-74512008 | Msa1037780:intron | 30.0% | |
| CATGACACTATACTAAATGT+TGG | + | chr7_1:74512171-74512190 | None:intergenic | 30.0% | |
| CAACATTTAGTATAGTGTCA+TGG | - | chr7_1:74512169-74512188 | Msa1037780:intron | 30.0% | |
| ! | GATTAGGTTTGCTTATCTAA+AGG | - | chr7_1:74512288-74512307 | Msa1037780:intron | 30.0% |
| ! | GTTTGCTTATCTAAAGGTAT+TGG | - | chr7_1:74512294-74512313 | Msa1037780:intron | 30.0% |
| !!! | ATATGCTATTTTAGGCTAGA+AGG | - | chr7_1:74512450-74512469 | Msa1037780:intron | 30.0% |
| ! | TCACAAGAATGCTAGATTTT+TGG | - | chr7_1:74512571-74512590 | Msa1037780:CDS | 30.0% |
| CAACATTGTAAAGAACATAC+CGG | + | chr7_1:74512597-74512616 | None:intergenic | 30.0% | |
| GGTGTTAAGTAGATGTTAAT+TGG | - | chr7_1:74512773-74512792 | Msa1037780:CDS | 30.0% | |
| !! | GATGGATTGAATGAAATCAA+AGG | - | chr7_1:74512882-74512901 | Msa1037780:CDS | 30.0% |
| TCTTATCGTATCAGTTTCAT+TGG | - | chr7_1:74513230-74513249 | Msa1037780:intron | 30.0% | |
| !! | AGCTAGTTTCCATTTTCATT+TGG | + | chr7_1:74513450-74513469 | None:intergenic | 30.0% |
| TTCAGTTGTGTGAATAAGTA+TGG | - | chr7_1:74513515-74513534 | Msa1037780:five_prime_UTR | 30.0% | |
| ! | TCTTTGTTTCTTTAGCAAAG+TGG | - | chr7_1:74513667-74513686 | Msa1037780:five_prime_UTR | 30.0% |
| CAATGCATTTCAGTCCAAAT+TGG | - | chr7_1:74509961-74509980 | Msa1037780:three_prime_UTR | 35.0% | |
| ACTAATTCTAGCAGAATCAG+TGG | + | chr7_1:74510121-74510140 | None:intergenic | 35.0% | |
| CTGATTCTGCTAGAATTAGT+TGG | - | chr7_1:74510121-74510140 | Msa1037780:CDS | 35.0% | |
| TTGCAGACAAAATGGTAACT+AGG | - | chr7_1:74510641-74510660 | Msa1037780:CDS | 35.0% | |
| CTTCTAAGCGTAAACAAGAA+GGG | + | chr7_1:74510765-74510784 | None:intergenic | 35.0% | |
| TCTTCTAAGCGTAAACAAGA+AGG | + | chr7_1:74510766-74510785 | None:intergenic | 35.0% | |
| TTTACGCTTAGAAGAAGAGA+TGG | - | chr7_1:74510771-74510790 | Msa1037780:intron | 35.0% | |
| AGTGAACAAGCACAGATATA+AGG | + | chr7_1:74510852-74510871 | None:intergenic | 35.0% | |
| CTGCAATTAGAGATCCAAAA+GGG | - | chr7_1:74511019-74511038 | Msa1037780:CDS | 35.0% | |
| TGCAATTAGAGATCCAAAAG+GGG | - | chr7_1:74511020-74511039 | Msa1037780:CDS | 35.0% | |
| ATATACAGAAAGAGTTGGAG+AGG | - | chr7_1:74511626-74511645 | Msa1037780:intron | 35.0% | |
| !! | CAGCTTTGAGTTCTTTAATC+TGG | - | chr7_1:74511741-74511760 | Msa1037780:intron | 35.0% |
| !!! | ATTTTGGTTTTTCAGGCACT+TGG | - | chr7_1:74511804-74511823 | Msa1037780:intron | 35.0% |
| TTCTAACCAAGAAACATCTC+AGG | + | chr7_1:74512018-74512037 | None:intergenic | 35.0% | |
| ! | TTCTTCAACCTTGAAGTACT+CGG | - | chr7_1:74512043-74512062 | Msa1037780:intron | 35.0% |
| ! | GTCATGGCAATGACAATTTT+AGG | - | chr7_1:74512185-74512204 | Msa1037780:intron | 35.0% |
| ! | TTCCAACAGCTTTATAACCA+AGG | - | chr7_1:74512344-74512363 | Msa1037780:intron | 35.0% |
| TACCTTGGTTATAAAGCTGT+TGG | + | chr7_1:74512349-74512368 | None:intergenic | 35.0% | |
| !!! | AAGAATGCTAGATTTTTGGC+CGG | - | chr7_1:74512575-74512594 | Msa1037780:CDS | 35.0% |
| ACAACAAACACCAACAAATG+TGG | + | chr7_1:74512701-74512720 | None:intergenic | 35.0% | |
| !! | TTGTTGGTGTTTGTTGTTCT+CGG | - | chr7_1:74512704-74512723 | Msa1037780:CDS | 35.0% |
| !! | AATATTGGTTTCCACAGAAG+AGG | + | chr7_1:74512922-74512941 | None:intergenic | 35.0% |
| TCCAAGGACTTAGAAGAATA+TGG | - | chr7_1:74513094-74513113 | Msa1037780:intron | 35.0% | |
| ! | GTGAACAATGAAGTGCTTTA+TGG | - | chr7_1:74513622-74513641 | Msa1037780:five_prime_UTR | 35.0% |
| TGGACTGAAATGCATTGCAT+GGG | + | chr7_1:74509958-74509977 | None:intergenic | 40.0% | |
| TTGGACTGAAATGCATTGCA+TGG | + | chr7_1:74509959-74509978 | None:intergenic | 40.0% | |
| CAAAATGGTAACTAGGACAG+TGG | - | chr7_1:74510648-74510667 | Msa1037780:CDS | 40.0% | |
| TAACTAGGACAGTGGATCTT+CGG | - | chr7_1:74510656-74510675 | Msa1037780:CDS | 40.0% | |
| TGAAACAATGCGAGTTGCTA+TGG | - | chr7_1:74510702-74510721 | Msa1037780:intron | 40.0% | |
| GAAGAGATGGCAAAGATAAC+TGG | - | chr7_1:74510784-74510803 | Msa1037780:intron | 40.0% | |
| TTGTTCACTGCGACATAAGA+GGG | - | chr7_1:74510863-74510882 | Msa1037780:intron | 40.0% | |
| AGAGGGAGTGAAGTAATTCT+TGG | - | chr7_1:74510880-74510899 | Msa1037780:intron | 40.0% | |
| GCTGCAATTAGAGATCCAAA+AGG | - | chr7_1:74511018-74511037 | Msa1037780:CDS | 40.0% | |
| ! | AGCTTGTTTATCCAACCACA+AGG | - | chr7_1:74511043-74511062 | Msa1037780:CDS | 40.0% |
| ! | AAACAAATGAGCCTTGTGGT+TGG | + | chr7_1:74511057-74511076 | None:intergenic | 40.0% |
| AACCACAAGGCTCATTTGTT+TGG | - | chr7_1:74511056-74511075 | Msa1037780:CDS | 40.0% | |
| TTCCAAACAAATGAGCCTTG+TGG | + | chr7_1:74511061-74511080 | None:intergenic | 40.0% | |
| GGATTGAAGCTTCACATTGA+TGG | - | chr7_1:74511663-74511682 | Msa1037780:intron | 40.0% | |
| TGGTTTCCTGAGATGTTTCT+TGG | - | chr7_1:74512009-74512028 | Msa1037780:intron | 40.0% | |
| CCAACAATTACAGATCCAAC+TGG | + | chr7_1:74512324-74512343 | None:intergenic | 40.0% | |
| CCAGTTGGATCTGTAATTGT+TGG | - | chr7_1:74512321-74512340 | Msa1037780:intron | 40.0% | |
| ! | CTTCAAACAGACTAGCTAGT+AGG | + | chr7_1:74512811-74512830 | None:intergenic | 40.0% |
| CCATCTAAAGGACAAGTTAG+AGG | + | chr7_1:74512867-74512886 | None:intergenic | 40.0% | |
| ! | CCTCTAACTTGTCCTTTAGA+TGG | - | chr7_1:74512864-74512883 | Msa1037780:CDS | 40.0% |
| TGAAATCAAAGGACTGAGAG+TGG | - | chr7_1:74512893-74512912 | Msa1037780:CDS | 40.0% | |
| GAAATCAAAGGACTGAGAGT+GGG | - | chr7_1:74512894-74512913 | Msa1037780:CDS | 40.0% | |
| GCCATATTCTTCTAAGTCCT+TGG | + | chr7_1:74513098-74513117 | None:intergenic | 40.0% | |
| CATCGCTATCTGATATTTGG+TGG | + | chr7_1:74513292-74513311 | None:intergenic | 40.0% | |
| GCACATCGCTATCTGATATT+TGG | + | chr7_1:74513295-74513314 | None:intergenic | 40.0% | |
| TCGTGCTTTCATGTGATGAT+CGG | - | chr7_1:74513326-74513345 | Msa1037780:intron | 40.0% | |
| TTATTGAATGTTGCAGCGTG+CGG | - | chr7_1:74513413-74513432 | Msa1037780:intron | 40.0% | |
| ! | TCCATTTTCATTTGGTCCTC+CGG | + | chr7_1:74513442-74513461 | None:intergenic | 40.0% |
| AACAGATTCTGTGCCATGTG+CGG | - | chr7_1:74510282-74510301 | Msa1037780:CDS | 45.0% | |
| GCAACTCGCATTGTTTCAGT+TGG | + | chr7_1:74510700-74510719 | None:intergenic | 45.0% | |
| ! | GAGGTCGATGATGATGTTCT+TGG | - | chr7_1:74510733-74510752 | Msa1037780:intron | 45.0% |
| ! | TTTTGTCCCATCAGGCACTA+TGG | - | chr7_1:74510822-74510841 | Msa1037780:intron | 45.0% |
| TTTGTCCCATCAGGCACTAT+GGG | - | chr7_1:74510823-74510842 | Msa1037780:intron | 45.0% | |
| CTTGTTCACTGCGACATAAG+AGG | - | chr7_1:74510862-74510881 | Msa1037780:intron | 45.0% | |
| TCTTGGATGTACACCTCCAA+GGG | + | chr7_1:74510950-74510969 | None:intergenic | 45.0% | |
| TTCTTGGATGTACACCTCCA+AGG | + | chr7_1:74510951-74510970 | None:intergenic | 45.0% | |
| ! | GGATAAACAAGCTCCCCTTT+TGG | + | chr7_1:74511036-74511055 | None:intergenic | 45.0% |
| TACTGCAACTACTCTGCAGT+CGG | - | chr7_1:74511195-74511214 | Msa1037780:intron | 45.0% | |
| ! | CGAGATTTGTTCACGGAGTT+TGG | + | chr7_1:74511239-74511258 | None:intergenic | 45.0% |
| ! | GAGCACACGAGATTTGTTCA+CGG | + | chr7_1:74511246-74511265 | None:intergenic | 45.0% |
| ACTCTGCTGCCTTTGAATGA+AGG | - | chr7_1:74511375-74511394 | Msa1037780:intron | 45.0% | |
| CTCTGCTGCCTTTGAATGAA+GGG | - | chr7_1:74511376-74511395 | Msa1037780:intron | 45.0% | |
| TTGTTTCCTGAATGCAGCAC+CGG | - | chr7_1:74511582-74511601 | Msa1037780:intron | 45.0% | |
| !! | AAAGGTATTGGTGCTCCAGT+TGG | - | chr7_1:74512306-74512325 | Msa1037780:intron | 45.0% |
| AGAAGGCTCAGAAAGACCTT+AGG | - | chr7_1:74512467-74512486 | Msa1037780:intron | 45.0% | |
| CACTGACACATGTTGGACAA+CGG | - | chr7_1:74512728-74512747 | Msa1037780:CDS | 45.0% | |
| AACGGACACCCTTCAATATC+AGG | - | chr7_1:74512746-74512765 | Msa1037780:CDS | 45.0% | |
| ACGGACACCCTTCAATATCA+GGG | - | chr7_1:74512747-74512766 | Msa1037780:CDS | 45.0% | |
| ATGATCCGATTGGCATGAGA+AGG | + | chr7_1:74513123-74513142 | None:intergenic | 45.0% | |
| TCATGCCAATCGGATCATCA+AGG | - | chr7_1:74513125-74513144 | Msa1037780:intron | 45.0% | |
| ! | CAAGACCTTGATGATCCGAT+TGG | + | chr7_1:74513133-74513152 | None:intergenic | 45.0% |
| ! | CGCTATCTGATATTTGGTGG+TGG | + | chr7_1:74513289-74513308 | None:intergenic | 45.0% |
| AGTTGCTATGGCAAACGCTG+AGG | - | chr7_1:74510714-74510733 | Msa1037780:intron | 50.0% | |
| AGCGTAAACAAGAAGGGTCG+CGG | + | chr7_1:74510759-74510778 | None:intergenic | 50.0% | |
| ! | GCTGCTCTTTTTGTCCCATC+AGG | - | chr7_1:74510814-74510833 | Msa1037780:intron | 50.0% |
| TTGTCCCATCAGGCACTATG+GGG | - | chr7_1:74510824-74510843 | Msa1037780:intron | 50.0% | |
| !! | AATGGAGGCATTGCAACCCT+TGG | - | chr7_1:74510931-74510950 | Msa1037780:intron | 50.0% |
| TACTCTGCAGTCGGAGATGT+AGG | - | chr7_1:74511204-74511223 | Msa1037780:intron | 50.0% | |
| GTCGGAGATGTAGGCAGAAT+TGG | - | chr7_1:74511213-74511232 | Msa1037780:CDS | 50.0% | |
| !! | AACCGAAAGGCATCTACCAC+CGG | + | chr7_1:74511604-74511623 | None:intergenic | 50.0% |
| GGAGAGGTTGCTAAGAAGCA+CGG | - | chr7_1:74511642-74511661 | Msa1037780:intron | 50.0% | |
| !! | CACTTGGTGTTCCTGTGGAT+AGG | - | chr7_1:74511820-74511839 | Msa1037780:intron | 50.0% |
| ! | TGTGGATAGGCTTGTTCGAG+CGG | - | chr7_1:74511833-74511852 | Msa1037780:intron | 50.0% |
| GCTTCGAACCGAGTACTTCA+AGG | + | chr7_1:74512054-74512073 | None:intergenic | 50.0% | |
| AGGCTCAGAAAGACCTTAGG+TGG | - | chr7_1:74512470-74512489 | Msa1037780:intron | 50.0% | |
| CTCAGAAAGACCTTAGGTGG+TGG | - | chr7_1:74512473-74512492 | Msa1037780:intron | 50.0% | |
| CTGTCTCATTCCACCACCTA+AGG | + | chr7_1:74512486-74512505 | None:intergenic | 50.0% | |
| !! | CTTAGGTGGTGGAATGAGAC+AGG | - | chr7_1:74512484-74512503 | Msa1037780:CDS | 50.0% |
| CAACAAGTGCAGCTGCACAA+AGG | + | chr7_1:74512517-74512536 | None:intergenic | 50.0% | |
| TCTCGGACACTGACACATGT+TGG | - | chr7_1:74512721-74512740 | Msa1037780:CDS | 50.0% | |
| CGGACACCCTTCAATATCAG+GGG | - | chr7_1:74512748-74512767 | Msa1037780:CDS | 50.0% | |
| CACCCTTCAATATCAGGGGT+CGG | - | chr7_1:74512752-74512771 | Msa1037780:CDS | 50.0% | |
| CACCGACCCCTGATATTGAA+GGG | + | chr7_1:74512757-74512776 | None:intergenic | 50.0% | |
| ACACCGACCCCTGATATTGA+AGG | + | chr7_1:74512758-74512777 | None:intergenic | 50.0% | |
| TCCAGCAGCAAAGCTATCCA+AGG | - | chr7_1:74513078-74513097 | Msa1037780:intron | 50.0% | |
| ! | TCCTTGGATAGCTTTGCTGC+TGG | + | chr7_1:74513082-74513101 | None:intergenic | 50.0% |
| GGCATCCTTCTCATGCCAAT+CGG | - | chr7_1:74513115-74513134 | Msa1037780:intron | 50.0% | |
| GCCGGAGGACCAAATGAAAA+TGG | - | chr7_1:74513438-74513457 | Msa1037780:intron | 50.0% | |
| CATTATCCACGCTCGAAGCG+TGG | - | chr7_1:74510481-74510500 | Msa1037780:CDS | 55.0% | |
| TTATGTCCACGCTTCGAGCG+TGG | + | chr7_1:74510490-74510509 | None:intergenic | 55.0% | |
| GGTTCCCCATAGTGCCTGAT+GGG | + | chr7_1:74510831-74510850 | None:intergenic | 55.0% | |
| AGGTTCCCCATAGTGCCTGA+TGG | + | chr7_1:74510832-74510851 | None:intergenic | 55.0% | |
| ! | TTTCCTGAATGCAGCACCGG+TGG | - | chr7_1:74511585-74511604 | Msa1037780:intron | 55.0% |
| CACCGGTGGTAGATGCCTTT+CGG | - | chr7_1:74511599-74511618 | Msa1037780:intron | 55.0% | |
| !! | TCAGGCACTTGGTGTTCCTG+TGG | - | chr7_1:74511815-74511834 | Msa1037780:intron | 55.0% |
| GCTCGAACAAGCCTATCCAC+AGG | + | chr7_1:74511834-74511853 | None:intergenic | 55.0% | |
| !! | GGTGGTGGAATGAGACAGGT+CGG | - | chr7_1:74512488-74512507 | Msa1037780:CDS | 55.0% |
| GAGAGTGGGTACCTCTTCTG+TGG | - | chr7_1:74512908-74512927 | Msa1037780:exon | 55.0% | |
| !! | GGAGGCATTGCAACCCTTGG+AGG | - | chr7_1:74510934-74510953 | Msa1037780:intron | 60.0% |
| !! | CTACCACCGGTGCTGCATTC+AGG | + | chr7_1:74511591-74511610 | None:intergenic | 60.0% |
| ATGTTGCAGCGTGCGGTTGC+CGG | - | chr7_1:74513420-74513439 | Msa1037780:intron | 60.0% | |
| TTGCAGCGTGCGGTTGCCGG+AGG | - | chr7_1:74513423-74513442 | Msa1037780:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 74509888 | 74513690 | 74509888 | ID=Msa1037780;Name=Msa1037780 |
| chr7_1 | mRNA | 74509888 | 74513690 | 74509888 | ID=Msa1037780-mRNA-1;Parent=Msa1037780;Name=Msa1037780-mRNA-1;_AED=0.10;_eAED=0.10;_QI=187|1|1|1|0.88|0.8|10|223|358 |
| chr7_1 | exon | 74509888 | 74510149 | 74509888 | ID=Msa1037780-mRNA-1:exon:18794;Parent=Msa1037780-mRNA-1 |
| chr7_1 | exon | 74510241 | 74510307 | 74510241 | ID=Msa1037780-mRNA-1:exon:18793;Parent=Msa1037780-mRNA-1 |
| chr7_1 | exon | 74510432 | 74510532 | 74510432 | ID=Msa1037780-mRNA-1:exon:18792;Parent=Msa1037780-mRNA-1 |
| chr7_1 | exon | 74510637 | 74510695 | 74510637 | ID=Msa1037780-mRNA-1:exon:18791;Parent=Msa1037780-mRNA-1 |
| chr7_1 | exon | 74510982 | 74511114 | 74510982 | ID=Msa1037780-mRNA-1:exon:18790;Parent=Msa1037780-mRNA-1 |
| chr7_1 | exon | 74511213 | 74511284 | 74511213 | ID=Msa1037780-mRNA-1:exon:18789;Parent=Msa1037780-mRNA-1 |
| chr7_1 | exon | 74511709 | 74511759 | 74511709 | ID=Msa1037780-mRNA-1:exon:18788;Parent=Msa1037780-mRNA-1 |
| chr7_1 | exon | 74511868 | 74511979 | 74511868 | ID=Msa1037780-mRNA-1:exon:18787;Parent=Msa1037780-mRNA-1 |
| chr7_1 | exon | 74512484 | 74512931 | 74512484 | ID=Msa1037780-mRNA-1:exon:18786;Parent=Msa1037780-mRNA-1 |
| chr7_1 | exon | 74513509 | 74513690 | 74513509 | ID=Msa1037780-mRNA-1:exon:18785;Parent=Msa1037780-mRNA-1 |
| chr7_1 | five_prime_UTR | 74513509 | 74513690 | 74513509 | ID=Msa1037780-mRNA-1:five_prime_utr;Parent=Msa1037780-mRNA-1 |
| chr7_1 | five_prime_UTR | 74512927 | 74512931 | 74512927 | ID=Msa1037780-mRNA-1:five_prime_utr;Parent=Msa1037780-mRNA-1 |
| chr7_1 | CDS | 74512484 | 74512926 | 74512484 | ID=Msa1037780-mRNA-1:cds;Parent=Msa1037780-mRNA-1 |
| chr7_1 | CDS | 74511868 | 74511979 | 74511868 | ID=Msa1037780-mRNA-1:cds;Parent=Msa1037780-mRNA-1 |
| chr7_1 | CDS | 74511709 | 74511759 | 74511709 | ID=Msa1037780-mRNA-1:cds;Parent=Msa1037780-mRNA-1 |
| chr7_1 | CDS | 74511213 | 74511284 | 74511213 | ID=Msa1037780-mRNA-1:cds;Parent=Msa1037780-mRNA-1 |
| chr7_1 | CDS | 74510982 | 74511114 | 74510982 | ID=Msa1037780-mRNA-1:cds;Parent=Msa1037780-mRNA-1 |
| chr7_1 | CDS | 74510637 | 74510695 | 74510637 | ID=Msa1037780-mRNA-1:cds;Parent=Msa1037780-mRNA-1 |
| chr7_1 | CDS | 74510432 | 74510532 | 74510432 | ID=Msa1037780-mRNA-1:cds;Parent=Msa1037780-mRNA-1 |
| chr7_1 | CDS | 74510241 | 74510307 | 74510241 | ID=Msa1037780-mRNA-1:cds;Parent=Msa1037780-mRNA-1 |
| chr7_1 | CDS | 74510111 | 74510149 | 74510111 | ID=Msa1037780-mRNA-1:cds;Parent=Msa1037780-mRNA-1 |
| chr7_1 | three_prime_UTR | 74509888 | 74510110 | 74509888 | ID=Msa1037780-mRNA-1:three_prime_utr;Parent=Msa1037780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
