Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979270 | XP_024641967.1 | 93.793 | 580 | 23 | 3 | 1 | 567 | 18 | 597 | 0.0 | 1095 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979270 | sp|Q8GUM4|Y3739_ARATH | 55.214 | 585 | 232 | 9 | 1 | 560 | 1 | 580 | 0.0 | 628 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979270 | A0A396HCZ0 | 93.793 | 580 | 23 | 3 | 1 | 567 | 18 | 597 | 0.0 | 1095 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0260470 | Msa0979270 | 0.800975 | 1.120014e-48 | -8.615850e-47 |
| Msa0871310 | Msa0979270 | 0.849603 | 2.908982e-60 | -8.615850e-47 |
| Msa0942300 | Msa0979270 | 0.865674 | 4.975726e-65 | -8.615850e-47 |
| Msa0979270 | Msa1208810 | 0.818588 | 1.812273e-52 | -8.615850e-47 |
| Msa0979270 | Msa1259010 | 0.819604 | 1.064564e-52 | -8.615850e-47 |
| Msa0979270 | Msa1419230 | 0.800136 | 1.660627e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979270 | MtrunA17_Chr6g0458321 | 93.793 | 580 | 23 | 3 | 1 | 567 | 18 | 597 | 0.0 | 1095 |
| Msa0979270 | MtrunA17_Chr7g0226361 | 61.672 | 574 | 203 | 6 | 1 | 558 | 1 | 573 | 0.0 | 706 |
| Msa0979270 | MtrunA17_Chr3g0120631 | 44.665 | 553 | 277 | 8 | 1 | 529 | 1 | 548 | 1.82e-150 | 444 |
| Msa0979270 | MtrunA17_Chr8g0374991 | 40.331 | 543 | 294 | 10 | 21 | 536 | 21 | 560 | 1.97e-132 | 399 |
| Msa0979270 | MtrunA17_Chr3g0120571 | 51.768 | 311 | 149 | 1 | 1 | 311 | 1 | 310 | 2.47e-104 | 317 |
| Msa0979270 | MtrunA17_Chr3g0120581 | 40.964 | 166 | 94 | 1 | 357 | 518 | 18 | 183 | 1.42e-29 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979270 | AT5G40640.1 | 56.649 | 579 | 225 | 8 | 1 | 557 | 1 | 575 | 0.0 | 637 |
| Msa0979270 | AT3G27390.2 | 55.214 | 585 | 232 | 9 | 1 | 560 | 1 | 580 | 0.0 | 628 |
| Msa0979270 | AT3G27390.1 | 55.214 | 585 | 232 | 9 | 1 | 560 | 1 | 580 | 0.0 | 628 |
| Msa0979270 | AT4G12680.1 | 45.872 | 545 | 271 | 10 | 1 | 524 | 1 | 542 | 4.28e-138 | 413 |
| Msa0979270 | AT4G37030.1 | 37.944 | 535 | 302 | 9 | 21 | 527 | 21 | 553 | 2.36e-129 | 390 |
Find 100 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTGTCGTCGGCGCATTTC+TGG | 0.099674 | 6_4:-15853802 | Msa0979270:CDS |
| CAGGAGTCTTCTTTCTTGTT+TGG | 0.241603 | 6_4:-15853602 | Msa0979270:CDS |
| GTCATGATTAAGCATATTAA+TGG | 0.261117 | 6_4:+15854969 | None:intergenic |
| CAGGCCTTGCTATCCTTCTA+TGG | 0.261167 | 6_4:-15853830 | Msa0979270:CDS |
| GGCTGGAGTTGTTGCCTATC+AGG | 0.273543 | 6_4:-15853745 | Msa0979270:intron |
| TGATGTTGCCTAGAATAAAA+AGG | 0.288251 | 6_4:+15856945 | None:intergenic |
| GGCTAGTTTGCGATCGGATT+CGG | 0.295331 | 6_4:+15852498 | None:intergenic |
| TAATGATCAAAAGTGGATTA+AGG | 0.298395 | 6_4:+15852635 | None:intergenic |
| CAGCTATCATACTTGGTCTT+TGG | 0.306187 | 6_4:-15854935 | Msa0979270:CDS |
| GGAATTGTTGGAAGTATTGT+AGG | 0.332832 | 6_4:-15854711 | Msa0979270:CDS |
| CCGGAGAATATTACGAAATC+AGG | 0.336687 | 6_4:-15854126 | Msa0979270:intron |
| CCATACTTATTTCTCTGTAA+TGG | 0.352662 | 6_4:-15854176 | Msa0979270:CDS |
| TGCAGGCTGCATTATATTCC+TGG | 0.357221 | 6_4:-15854017 | Msa0979270:intron |
| TGGTCGCGAAGGCCCTTTCT+TGG | 0.363819 | 6_4:-15853874 | Msa0979270:CDS |
| ATCTTTCTCGGTGCTCGGGC+TGG | 0.380067 | 6_4:-15853762 | Msa0979270:CDS |
| CTTCTTTCTTGTTTGGCCTT+CGG | 0.381705 | 6_4:-15853595 | Msa0979270:CDS |
| GCTAGTTTGCGATCGGATTC+GGG | 0.382093 | 6_4:+15852499 | None:intergenic |
| CGTTTGTTTCGTGACCTCAT+TGG | 0.382811 | 6_4:-15853894 | Msa0979270:CDS |
| CAACCTTTGAAAAGCATGTA+TGG | 0.388635 | 6_4:+15853921 | None:intergenic |
| TCTTCAATGGTGATCTAGAT+AGG | 0.395079 | 6_4:-15852549 | Msa0979270:CDS |
| CTCTATTAAAGCCGATTCCT+CGG | 0.399831 | 6_4:-15852842 | Msa0979270:CDS |
| CGACAGCCAGTGGCCATAGA+AGG | 0.405277 | 6_4:+15853817 | None:intergenic |
| ATTGTAGGTGGTGCAGCTTA+TGG | 0.409722 | 6_4:-15854696 | Msa0979270:CDS |
| TTATTTCTGTGAAGGCTTCA+AGG | 0.409868 | 6_4:-15852269 | Msa0979270:intron |
| GACTACAGATGTAAACAATT+AGG | 0.416259 | 6_4:-15854801 | Msa0979270:intron |
| AACTCGACGCATTGGCTAGA+AGG | 0.416951 | 6_4:-15852474 | Msa0979270:intron |
| CCATTACAGAGAAATAAGTA+TGG | 0.425303 | 6_4:+15854176 | None:intergenic |
| GCTTCAAAAGTAGCAAATAA+TGG | 0.426557 | 6_4:+15854663 | None:intergenic |
| GCTGTTGTAGCAGCAATTCT+CGG | 0.428501 | 6_4:-15853993 | Msa0979270:CDS |
| GAGAGTAAAGTCATTAGTAT+TGG | 0.428912 | 6_4:-15852901 | Msa0979270:CDS |
| TAGTATCTTTGTAGACATCT+TGG | 0.435372 | 6_4:-15857046 | Msa0979270:five_prime_UTR |
| GACATACAAGAAGCCATGTT+TGG | 0.437610 | 6_4:-15852928 | Msa0979270:CDS |
| TGCTATCCTTCTATGGCCAC+TGG | 0.437738 | 6_4:-15853823 | Msa0979270:CDS |
| CTTGGAAAGCAAGATCCTTC+CGG | 0.439978 | 6_4:+15853515 | None:intergenic |
| TGAGTATCTTTCTCGGTGCT+CGG | 0.441040 | 6_4:-15853767 | Msa0979270:CDS |
| GTAATAGTGAGTATCTTTCT+CGG | 0.446559 | 6_4:-15853774 | Msa0979270:CDS |
| AAGGCAACACATGATATAAT+CGG | 0.450647 | 6_4:+15853954 | None:intergenic |
| TGCAAGTTAGTCCTCTTCAA+TGG | 0.456367 | 6_4:-15852562 | Msa0979270:CDS |
| ACGTGAAATAGTCTTTGTTA+AGG | 0.456904 | 6_4:+15853316 | None:intergenic |
| ACACATATTGTCTCCAAGAA+AGG | 0.461105 | 6_4:+15853861 | None:intergenic |
| TATCAATATACCCGAGGAAT+CGG | 0.463010 | 6_4:+15852831 | None:intergenic |
| GAGTATCTTTCTCGGTGCTC+GGG | 0.463608 | 6_4:-15853766 | Msa0979270:CDS |
| TTGCGATCGGATTCGGGAGG+AGG | 0.469029 | 6_4:+15852505 | None:intergenic |
| TTGGTGGTCCGTCTTGTCTC+AGG | 0.469442 | 6_4:+15854149 | None:intergenic |
| AAATCATTCAACAAAAGTAA+TGG | 0.471060 | 6_4:-15852101 | Msa0979270:CDS |
| CATGTATGGGACTTTACATA+AGG | 0.474384 | 6_4:+15853935 | None:intergenic |
| TCTATTAAAGCCGATTCCTC+GGG | 0.475474 | 6_4:-15852841 | Msa0979270:intron |
| AGACAAGACGGACCACCAAC+CGG | 0.475822 | 6_4:-15854145 | Msa0979270:CDS |
| TGATCTTTAATGATCAAAAG+TGG | 0.480904 | 6_4:+15852628 | None:intergenic |
| TCTAGCCAATGCGTCGAGTT+CGG | 0.487634 | 6_4:+15852477 | None:intergenic |
| CCTGATTTCGTAATATTCTC+CGG | 0.491674 | 6_4:+15854126 | None:intergenic |
| CGGAAGGATCTTGCTTTCCA+AGG | 0.495581 | 6_4:-15853514 | Msa0979270:intron |
| AGCTGAGTTGAAACCATTTG+AGG | 0.501739 | 6_4:-15853270 | Msa0979270:intron |
| TTTACTCTCTTTGCCAAACA+TGG | 0.503256 | 6_4:+15852915 | None:intergenic |
| CTGTTGTAGCAGCAATTCTC+GGG | 0.512445 | 6_4:-15853992 | Msa0979270:CDS |
| TCTGATGAAGAATCTGAACT+TGG | 0.513957 | 6_4:-15852077 | Msa0979270:CDS |
| ACATCTTGGTGGGAGTGTAA+TGG | 0.523834 | 6_4:-15857032 | Msa0979270:exon |
| AGGATAGCAAGGCCTGCAAA+AGG | 0.529649 | 6_4:+15853837 | None:intergenic |
| TCGTAATATTCTCCGGTTGG+TGG | 0.530909 | 6_4:+15854133 | None:intergenic |
| ATTTCGTAATATTCTCCGGT+TGG | 0.531719 | 6_4:+15854130 | None:intergenic |
| GGAAACTCAGCTATCATACT+TGG | 0.532762 | 6_4:-15854942 | Msa0979270:CDS |
| CACATATTGTCTCCAAGAAA+GGG | 0.540976 | 6_4:+15853862 | None:intergenic |
| CTTCAATGGTGATCTAGATA+GGG | 0.550587 | 6_4:-15852548 | Msa0979270:CDS |
| AACCTTTGAAAAGCATGTAT+GGG | 0.550803 | 6_4:+15853922 | None:intergenic |
| TAATGATGTTCTTGACATGC+CGG | 0.552492 | 6_4:-15853534 | Msa0979270:CDS |
| ACTAGCCGAACTCGACGCAT+TGG | 0.553184 | 6_4:-15852482 | Msa0979270:CDS |
| TCTTCATGTAGGAGAAACAT+TGG | 0.555373 | 6_4:-15852977 | Msa0979270:CDS |
| AAATCTTTCCGTGTCTGAAG+AGG | 0.559024 | 6_4:-15852593 | Msa0979270:CDS |
| ATCTTTGTAGACATCTTGGT+GGG | 0.562069 | 6_4:-15857042 | Msa0979270:five_prime_UTR |
| AGCCATAAAATCAACAGCAC+TGG | 0.565744 | 6_4:+15854741 | None:intergenic |
| TATCTTTGTAGACATCTTGG+TGG | 0.571684 | 6_4:-15857043 | Msa0979270:five_prime_UTR |
| TTTATTCTAGGCAACATCAA+AGG | 0.573100 | 6_4:-15856941 | Msa0979270:intron |
| TAAGGACTTAGTTCTTGAGA+AGG | 0.574806 | 6_4:+15853334 | None:intergenic |
| TTTGGTGCATACATACTACA+TGG | 0.579461 | 6_4:-15854917 | Msa0979270:CDS |
| CAATGAGGTCACGAAACAAA+CGG | 0.580426 | 6_4:+15853895 | None:intergenic |
| CGTGACCTCATTGGTCGCGA+AGG | 0.581435 | 6_4:-15853885 | Msa0979270:CDS |
| GAGTTCGGCTAGTTTGCGAT+CGG | 0.583405 | 6_4:+15852492 | None:intergenic |
| GAAGACATTTGATATTGTGA+AGG | 0.589826 | 6_4:-15854218 | Msa0979270:CDS |
| TATCTAGATCACCATTGAAG+AGG | 0.592362 | 6_4:+15852551 | None:intergenic |
| GAAGAGCTTGCAGAGAAACA+TGG | 0.593121 | 6_4:-15852176 | Msa0979270:CDS |
| TGAAGAGGACTAACTTGCAA+AGG | 0.600847 | 6_4:+15852566 | None:intergenic |
| CACATCACAAACTTCAGCAA+TGG | 0.603702 | 6_4:+15854777 | None:intergenic |
| GCTTGAAGAAGACAATAAGC+TGG | 0.606362 | 6_4:+15852874 | None:intergenic |
| GTATAACAAAATTTATCACA+AGG | 0.619052 | 6_4:-15852247 | Msa0979270:CDS |
| ATATGCTTAATCATGACGAT+CGG | 0.623490 | 6_4:-15854963 | Msa0979270:CDS |
| ATGGATGACCTGAGACAAGA+CGG | 0.626405 | 6_4:-15854157 | Msa0979270:CDS |
| ATTGCTGCTACAACAGCACC+AGG | 0.626899 | 6_4:+15853999 | None:intergenic |
| AACTACTACAAACAGACCAA+AGG | 0.630428 | 6_4:-15852677 | Msa0979270:CDS |
| TGGATCCTTAGGATGGAACA+TGG | 0.632406 | 6_4:-15854252 | Msa0979270:intron |
| TGCAAGGAATGTCTTCATGT+AGG | 0.633729 | 6_4:-15852988 | Msa0979270:intron |
| GATGTTCTTGACATGCCGGA+AGG | 0.637592 | 6_4:-15853530 | Msa0979270:CDS |
| GTGGCCATAGAAGGATAGCA+AGG | 0.648910 | 6_4:+15853826 | None:intergenic |
| AAGGTAGTCCTCTTCAGACA+CGG | 0.649762 | 6_4:+15852585 | None:intergenic |
| AAGTTGCAACAATGTACCGA+AGG | 0.657107 | 6_4:+15853579 | None:intergenic |
| GATTTCAAACTAAATATCCG+AGG | 0.670820 | 6_4:+15852119 | None:intergenic |
| ATTGTTGGAAGTATTGTAGG+TGG | 0.684186 | 6_4:-15854708 | Msa0979270:CDS |
| AAGGGCCTTCGCGACCAATG+AGG | 0.687378 | 6_4:+15853880 | None:intergenic |
| AGTTTGCGATCGGATTCGGG+AGG | 0.697822 | 6_4:+15852502 | None:intergenic |
| CAAAACATACCATAAAACAG+TGG | 0.698483 | 6_4:+15854610 | None:intergenic |
| GGACATATTACTGTGTTGTG+AGG | 0.740533 | 6_4:-15854896 | Msa0979270:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATTAAATTAAATAAAA+AGG | - | chr6_4:15852953-15852972 | Msa0979270:CDS | 0.0% |
| !! | TTTATTAAATTAAATAAAAA+GGG | - | chr6_4:15852954-15852973 | Msa0979270:CDS | 0.0% |
| !!! | TCTTATTAATTGATTTTATT+CGG | - | chr6_4:15853178-15853197 | Msa0979270:intron | 10.0% |
| !! | AAAACAAAAAAAAAAAAAAC+TGG | + | chr6_4:15853681-15853700 | None:intergenic | 10.0% |
| !!! | AAGAATTTTTTTTTACTAAT+AGG | - | chr6_4:15853839-15853858 | Msa0979270:CDS | 10.0% |
| !!! | AACAATAATATCTTATTTTA+GGG | + | chr6_4:15855470-15855489 | None:intergenic | 10.0% |
| !!! | TTCTAAAAGTTCAAAAAAAA+AGG | - | chr6_4:15852024-15852043 | Msa0979270:three_prime_UTR | 15.0% |
| !! | TCTAAAAGTTCAAAAAAAAA+GGG | - | chr6_4:15852025-15852044 | Msa0979270:three_prime_UTR | 15.0% |
| !!! | AAATAAATTTTATGAAGCAT+AGG | - | chr6_4:15852498-15852517 | Msa0979270:CDS | 15.0% |
| !!! | AATTAAGTTGATTATTCAAA+CGG | + | chr6_4:15852603-15852622 | None:intergenic | 15.0% |
| !!! | TTCTTATTTACATCAAATTT+AGG | + | chr6_4:15853127-15853146 | None:intergenic | 15.0% |
| !! | ATGTAAATAAGAAAAAGTAA+TGG | - | chr6_4:15853134-15853153 | Msa0979270:intron | 15.0% |
| !! | TACTTAACTTTCTTAATTAT+TGG | - | chr6_4:15853285-15853304 | Msa0979270:CDS | 15.0% |
| !! | ACTTAACTTTCTTAATTATT+GGG | - | chr6_4:15853286-15853305 | Msa0979270:CDS | 15.0% |
| !!! | AAGATTTGTATGTATATTTT+TGG | + | chr6_4:15853733-15853752 | None:intergenic | 15.0% |
| !!! | TAAAAATCATACTCTAAAAA+CGG | + | chr6_4:15854154-15854173 | None:intergenic | 15.0% |
| !!! | ATGTGTTATTAGATATAAAA+AGG | - | chr6_4:15854638-15854657 | Msa0979270:CDS | 15.0% |
| !!! | AATTTTAAACATCATAAACT+AGG | + | chr6_4:15854757-15854776 | None:intergenic | 15.0% |
| !!! | GAACAATAATATCTTATTTT+AGG | + | chr6_4:15855471-15855490 | None:intergenic | 15.0% |
| !!! | GTAAAATACTGAAATTTTAT+TGG | + | chr6_4:15856786-15856805 | None:intergenic | 15.0% |
| !!! | TTTTTGAACTTTTAGAATTG+AGG | + | chr6_4:15852021-15852040 | None:intergenic | 20.0% |
| !! | AAAAAAAAAGGGAAGAAAAT+GGG | - | chr6_4:15852036-15852055 | Msa0979270:exon | 20.0% |
| !! | ATCAAAGCATACAAATAATA+TGG | + | chr6_4:15852291-15852310 | None:intergenic | 20.0% |
| !! | TAATCATCAATAAAACATGT+TGG | + | chr6_4:15852444-15852463 | None:intergenic | 20.0% |
| !!! | ATGAAAAAGTATATGATGAA+TGG | - | chr6_4:15852545-15852564 | Msa0979270:CDS | 20.0% |
| !! | GGTAAATAAGAATATAAAAG+TGG | - | chr6_4:15852566-15852585 | Msa0979270:CDS | 20.0% |
| !!! | ATTAAGTTGATTATTCAAAC+GGG | + | chr6_4:15852602-15852621 | None:intergenic | 20.0% |
| !!! | AATCTATTTTGAAGAGTTTT+TGG | - | chr6_4:15852725-15852744 | Msa0979270:intron | 20.0% |
| !! | AATGAAATCTCAATGTAAAT+TGG | + | chr6_4:15852839-15852858 | None:intergenic | 20.0% |
| !! | AAAAAAAGAAAAAGGAGTTT+GGG | + | chr6_4:15852899-15852918 | None:intergenic | 20.0% |
| !! | TAAAAAAAGAAAAAGGAGTT+TGG | + | chr6_4:15852900-15852919 | None:intergenic | 20.0% |
| !! | TAAAAAGGGAACAAAATTAT+TGG | - | chr6_4:15852968-15852987 | Msa0979270:CDS | 20.0% |
| !! | TAAATGAATCTCAATTAACT+CGG | - | chr6_4:15853397-15853416 | Msa0979270:intron | 20.0% |
| !!! | TTAATCTCTTTTTCTTTCTT+AGG | + | chr6_4:15853618-15853637 | None:intergenic | 20.0% |
| !! | GAAAAAGAGATTAAAATATG+AGG | - | chr6_4:15853624-15853643 | Msa0979270:intron | 20.0% |
| !! | CAAAAAAAAAAAAAACTGGA+GGG | + | chr6_4:15853677-15853696 | None:intergenic | 20.0% |
| !! | ACAAAAAAAAAAAAAACTGG+AGG | + | chr6_4:15853678-15853697 | None:intergenic | 20.0% |
| !!! | GTATATTTTTGGTAAAAGAA+TGG | + | chr6_4:15853722-15853741 | None:intergenic | 20.0% |
| !! | AAAGAACTTCAAATAATGTA+AGG | - | chr6_4:15853766-15853785 | Msa0979270:CDS | 20.0% |
| !! | TATTCTATTATGCAATACTT+TGG | + | chr6_4:15854022-15854041 | None:intergenic | 20.0% |
| !! | TATTGCATAATAGAATACTA+CGG | - | chr6_4:15854025-15854044 | Msa0979270:intron | 20.0% |
| !!! | GTTTATGATGTTTAAAATTG+TGG | - | chr6_4:15854758-15854777 | Msa0979270:CDS | 20.0% |
| !! | ATTACGTAATGAATATAACA+AGG | + | chr6_4:15854821-15854840 | None:intergenic | 20.0% |
| !! | TAAAATTTCACAGAAAATCA+AGG | + | chr6_4:15855123-15855142 | None:intergenic | 20.0% |
| !! | AAAAAAAACGTGTATTACAA+AGG | + | chr6_4:15855711-15855730 | None:intergenic | 20.0% |
| !! | TAATTAAGCACTTCTAATAT+TGG | - | chr6_4:15856437-15856456 | Msa0979270:intron | 20.0% |
| !!! | AGGGTAAAAAATTTAACTTT+TGG | - | chr6_4:15856656-15856675 | Msa0979270:intron | 20.0% |
| !! | GTATAACAAAATTTATCACA+AGG | - | chr6_4:15856938-15856957 | Msa0979270:intron | 20.0% |
| !! | AAATCATTCAACAAAAGTAA+TGG | - | chr6_4:15857084-15857103 | Msa0979270:five_prime_UTR | 20.0% |
| ! | CAAAAAAAAAGGGAAGAAAA+TGG | - | chr6_4:15852035-15852054 | Msa0979270:exon | 25.0% |
| ! | AAAAAAAAGGGAAGAAAATG+GGG | - | chr6_4:15852037-15852056 | Msa0979270:exon | 25.0% |
| ! | AGATGTAGAAAAAGAACAAA+AGG | + | chr6_4:15852075-15852094 | None:intergenic | 25.0% |
| !!! | ATGATTTTTGGTCTTCAATA+TGG | - | chr6_4:15852185-15852204 | Msa0979270:CDS | 25.0% |
| ! | ATAAAAAGGCTGATGAAATA+TGG | + | chr6_4:15852229-15852248 | None:intergenic | 25.0% |
| !! | CAACATCAAAGGTAAATTTT+AGG | - | chr6_4:15852255-15852274 | Msa0979270:CDS | 25.0% |
| !! | ATTTTATGAAGCATAGGATT+TGG | - | chr6_4:15852504-15852523 | Msa0979270:CDS | 25.0% |
| ! | ACATTGAGATTTCATTTACA+AGG | - | chr6_4:15852843-15852862 | Msa0979270:CDS | 25.0% |
| ! | CATTGAGATTTCATTTACAA+GGG | - | chr6_4:15852844-15852863 | Msa0979270:CDS | 25.0% |
| ! | ATTGAGATTTCATTTACAAG+GGG | - | chr6_4:15852845-15852864 | Msa0979270:CDS | 25.0% |
| ! | AAAAAAGAAAAAGGAGTTTG+GGG | + | chr6_4:15852898-15852917 | None:intergenic | 25.0% |
| ! | AAAGTGATCATAAATGTGTT+TGG | + | chr6_4:15853011-15853030 | None:intergenic | 25.0% |
| !! | TTATGTTCCCTTATTTATTG+AGG | - | chr6_4:15853065-15853084 | Msa0979270:intron | 25.0% |
| ! | TTGACAACTTCTTTCAAAAA+AGG | + | chr6_4:15853373-15853392 | None:intergenic | 25.0% |
| ! | TTGGTATATCTGCAAAATAT+CGG | + | chr6_4:15853434-15853453 | None:intergenic | 25.0% |
| ! | TTGGATTTGAAAAAGGAAAA+AGG | + | chr6_4:15853525-15853544 | None:intergenic | 25.0% |
| !! | CATCTTTTTGGATTTGAAAA+AGG | + | chr6_4:15853532-15853551 | None:intergenic | 25.0% |
| ! | GAGATTAAAATATGAGGATA+AGG | - | chr6_4:15853630-15853649 | Msa0979270:intron | 25.0% |
| ! | AAAATATGAGGATAAGGATT+TGG | - | chr6_4:15853636-15853655 | Msa0979270:intron | 25.0% |
| ! | AATGTAGAGAAACAACAAAA+GGG | + | chr6_4:15853797-15853816 | None:intergenic | 25.0% |
| ! | AAATGTAGAGAAACAACAAA+AGG | + | chr6_4:15853798-15853817 | None:intergenic | 25.0% |
| !!! | TTGTTGTTTCTCTACATTTA+TGG | - | chr6_4:15853799-15853818 | Msa0979270:CDS | 25.0% |
| ! | GTCATGATTAAGCATATTAA+TGG | + | chr6_4:15854219-15854238 | None:intergenic | 25.0% |
| !!! | TTGATTTTATGGCTAGTTTT+GGG | - | chr6_4:15854453-15854472 | Msa0979270:intron | 25.0% |
| !! | CAAAATTTTCCACTGTTTTA+TGG | - | chr6_4:15854566-15854585 | Msa0979270:intron | 25.0% |
| !! | TTGATAACAAATTTCGACAA+CGG | + | chr6_4:15854878-15854897 | None:intergenic | 25.0% |
| !!! | TATAATCTCTTTTTTGATGC+AGG | - | chr6_4:15855151-15855170 | Msa0979270:intron | 25.0% |
| ! | AAATATCAAACACAAGTCAA+GGG | + | chr6_4:15855770-15855789 | None:intergenic | 25.0% |
| ! | ACTTGTGTTTGATATTTGAT+AGG | - | chr6_4:15855773-15855792 | Msa0979270:intron | 25.0% |
| ! | GCAAAAAGATTGAAATATCA+CGG | - | chr6_4:15855809-15855828 | Msa0979270:intron | 25.0% |
| !!! | TGTAAAAAAAGTACCTCAAA+TGG | + | chr6_4:15855931-15855950 | None:intergenic | 25.0% |
| ! | AAATCAGATAACTCACATTT+CGG | - | chr6_4:15856018-15856037 | Msa0979270:intron | 25.0% |
| !!! | TAATGATCAAAAGTGGATTA+AGG | + | chr6_4:15856553-15856572 | None:intergenic | 25.0% |
| ! | TGATCTTTAATGATCAAAAG+TGG | + | chr6_4:15856560-15856579 | None:intergenic | 25.0% |
| ! | CAGCGATATAAACATAATAA+CGG | + | chr6_4:15856808-15856827 | None:intergenic | 25.0% |
| !!! | TTTTGTACTTATTTCTGTGA+AGG | - | chr6_4:15856908-15856927 | Msa0979270:intron | 25.0% |
| TAGTATCTTTGTAGACATCT+TGG | - | chr6_4:15852139-15852158 | Msa0979270:CDS | 30.0% | |
| ATTGAAGACCAAAAATCATG+AGG | + | chr6_4:15852184-15852203 | None:intergenic | 30.0% | |
| ! | TTCATCAGCCTTTTTATTCT+AGG | - | chr6_4:15852232-15852251 | Msa0979270:CDS | 30.0% |
| TGATGTTGCCTAGAATAAAA+AGG | + | chr6_4:15852243-15852262 | None:intergenic | 30.0% | |
| TTTATTCTAGGCAACATCAA+AGG | - | chr6_4:15852244-15852263 | Msa0979270:CDS | 30.0% | |
| GCTTTATCTTCATTTAGCAA+TGG | - | chr6_4:15852335-15852354 | Msa0979270:intron | 30.0% | |
| CTCAATGTAAATTGGACAAA+TGG | + | chr6_4:15852831-15852850 | None:intergenic | 30.0% | |
| AAAAAGAAAAAGGAGTTTGG+GGG | + | chr6_4:15852897-15852916 | None:intergenic | 30.0% | |
| GAACAGACCTCAATAAATAA+GGG | + | chr6_4:15853075-15853094 | None:intergenic | 30.0% | |
| AGAACAGACCTCAATAAATA+AGG | + | chr6_4:15853076-15853095 | None:intergenic | 30.0% | |
| ! | AATTTAGGTGAGTTGAGTTT+CGG | + | chr6_4:15853112-15853131 | None:intergenic | 30.0% |
| TCAACAATTTGACACATGAT+CGG | - | chr6_4:15853309-15853328 | Msa0979270:CDS | 30.0% | |
| ! | ATCATGAGATGTCATCTTTT+TGG | + | chr6_4:15853544-15853563 | None:intergenic | 30.0% |
| ATATGCTTAATCATGACGAT+CGG | - | chr6_4:15854222-15854241 | Msa0979270:CDS | 30.0% | |
| TTTACATCTGTAGTCAGTTA+AGG | + | chr6_4:15854379-15854398 | None:intergenic | 30.0% | |
| GACTACAGATGTAAACAATT+AGG | - | chr6_4:15854384-15854403 | Msa0979270:intron | 30.0% | |
| !!! | GTTGATTTTATGGCTAGTTT+TGG | - | chr6_4:15854452-15854471 | Msa0979270:intron | 30.0% |
| GCTTCAAAAGTAGCAAATAA+TGG | + | chr6_4:15854525-15854544 | None:intergenic | 30.0% | |
| CAAAACATACCATAAAACAG+TGG | + | chr6_4:15854578-15854597 | None:intergenic | 30.0% | |
| AAATGTACACATGAAAATCG+TGG | + | chr6_4:15854684-15854703 | None:intergenic | 30.0% | |
| ACATCATAAACTAGGATTGT+CGG | + | chr6_4:15854749-15854768 | None:intergenic | 30.0% | |
| TTAACCACGTATTTGAACTA+TGG | - | chr6_4:15854840-15854859 | Msa0979270:intron | 30.0% | |
| TGTCGTATCTGATTTCATAT+TGG | - | chr6_4:15854913-15854932 | Msa0979270:CDS | 30.0% | |
| TGATTTCATATTGGATCCTT+AGG | - | chr6_4:15854922-15854941 | Msa0979270:CDS | 30.0% | |
| GAAGACATTTGATATTGTGA+AGG | - | chr6_4:15854967-15854986 | Msa0979270:CDS | 30.0% | |
| CCATTACAGAGAAATAAGTA+TGG | + | chr6_4:15855012-15855031 | None:intergenic | 30.0% | |
| ! | CCATACTTATTTCTCTGTAA+TGG | - | chr6_4:15855009-15855028 | Msa0979270:intron | 30.0% |
| AAGGCAACACATGATATAAT+CGG | + | chr6_4:15855234-15855253 | None:intergenic | 30.0% | |
| ! | AACCTTTGAAAAGCATGTAT+GGG | + | chr6_4:15855266-15855285 | None:intergenic | 30.0% |
| GTAATAGTGAGTATCTTTCT+CGG | - | chr6_4:15855411-15855430 | Msa0979270:intron | 30.0% | |
| AGCACAAAACAAGATGATAT+AGG | + | chr6_4:15855493-15855512 | None:intergenic | 30.0% | |
| ATATAGAGAGATAACAATGC+AGG | - | chr6_4:15855564-15855583 | Msa0979270:intron | 30.0% | |
| CAAATATCAAACACAAGTCA+AGG | + | chr6_4:15855771-15855790 | None:intergenic | 30.0% | |
| !! | ATCTTTTTGCGTCGATATTT+AGG | + | chr6_4:15855799-15855818 | None:intergenic | 30.0% |
| ACGTGAAATAGTCTTTGTTA+AGG | + | chr6_4:15855872-15855891 | None:intergenic | 30.0% | |
| GAGAGTAAAGTCATTAGTAT+TGG | - | chr6_4:15856284-15856303 | Msa0979270:intron | 30.0% | |
| ! | TTAAGTTGTTTGTCCGAATA+GGG | + | chr6_4:15856420-15856439 | None:intergenic | 30.0% |
| ! | ATTAAGTTGTTTGTCCGAAT+AGG | + | chr6_4:15856421-15856440 | None:intergenic | 30.0% |
| CATTCAAAAAACTTCTCCTT+TGG | + | chr6_4:15856527-15856546 | None:intergenic | 30.0% | |
| !!! | CAAAGGAGAAGTTTTTTGAA+TGG | - | chr6_4:15856525-15856544 | Msa0979270:intron | 30.0% |
| GATTTCAAACTAAATATCCG+AGG | + | chr6_4:15857069-15857088 | None:intergenic | 30.0% | |
| TATCTTTGTAGACATCTTGG+TGG | - | chr6_4:15852142-15852161 | Msa0979270:CDS | 35.0% | |
| ATCTTTGTAGACATCTTGGT+GGG | - | chr6_4:15852143-15852162 | Msa0979270:CDS | 35.0% | |
| TGGTAGTAACTAACTGAGTT+AGG | + | chr6_4:15852424-15852443 | None:intergenic | 35.0% | |
| ! | ATTTAGGTGAGTTGAGTTTC+GGG | + | chr6_4:15853111-15853130 | None:intergenic | 35.0% |
| AACACTCACATCTTTCTCTT+TGG | + | chr6_4:15853453-15853472 | None:intergenic | 35.0% | |
| GACTCATATTAGCTGATAAG+TGG | - | chr6_4:15853894-15853913 | Msa0979270:CDS | 35.0% | |
| ! | CTCTCTCTCAAACTATTTTC+AGG | - | chr6_4:15854180-15854199 | Msa0979270:CDS | 35.0% |
| ! | TTTGGTGCATACATACTACA+TGG | - | chr6_4:15854268-15854287 | Msa0979270:intron | 35.0% |
| !!! | TACCAGTGCTGTTGATTTTA+TGG | - | chr6_4:15854442-15854461 | Msa0979270:intron | 35.0% |
| !! | GGAATTGTTGGAAGTATTGT+AGG | - | chr6_4:15854474-15854493 | Msa0979270:intron | 35.0% |
| !! | ATTGTTGGAAGTATTGTAGG+TGG | - | chr6_4:15854477-15854496 | Msa0979270:intron | 35.0% |
| !!! | GCTACTTTTGAAGCTATTGA+AGG | - | chr6_4:15854531-15854550 | Msa0979270:intron | 35.0% |
| !! | GTACATTTTAACACAGATCG+TGG | - | chr6_4:15854696-15854715 | Msa0979270:CDS | 35.0% |
| TTAACACAGATCGTGGTTAA+TGG | - | chr6_4:15854703-15854722 | Msa0979270:CDS | 35.0% | |
| GTTACCATAGTTCAAATACG+TGG | + | chr6_4:15854847-15854866 | None:intergenic | 35.0% | |
| TTCATATTGGATCCTTAGGA+TGG | - | chr6_4:15854926-15854945 | Msa0979270:CDS | 35.0% | |
| ATTTCGTAATATTCTCCGGT+TGG | + | chr6_4:15855058-15855077 | None:intergenic | 35.0% | |
| CCTGATTTCGTAATATTCTC+CGG | + | chr6_4:15855062-15855081 | None:intergenic | 35.0% | |
| CATGTATGGGACTTTACATA+AGG | + | chr6_4:15855253-15855272 | None:intergenic | 35.0% | |
| ! | CAACCTTTGAAAAGCATGTA+TGG | + | chr6_4:15855267-15855286 | None:intergenic | 35.0% |
| ! | CATACATGCTTTTCAAAGGT+TGG | - | chr6_4:15855265-15855284 | Msa0979270:intron | 35.0% |
| CACATATTGTCTCCAAGAAA+GGG | + | chr6_4:15855326-15855345 | None:intergenic | 35.0% | |
| ACACATATTGTCTCCAAGAA+AGG | + | chr6_4:15855327-15855346 | None:intergenic | 35.0% | |
| !!! | TATTTTAGGGCTAACCTGAT+AGG | + | chr6_4:15855457-15855476 | None:intergenic | 35.0% |
| !! | ATGAAGTACTGACATAGACA+CGG | - | chr6_4:15855515-15855534 | Msa0979270:intron | 35.0% |
| ATCTCTCTATATGTCAGTGT+TGG | + | chr6_4:15855556-15855575 | None:intergenic | 35.0% | |
| TAATGATGTTCTTGACATGC+CGG | - | chr6_4:15855651-15855670 | Msa0979270:intron | 35.0% | |
| AGGAAAGAAGAGTAAAACCT+TGG | + | chr6_4:15855691-15855710 | None:intergenic | 35.0% | |
| ! | TAAGGACTTAGTTCTTGAGA+AGG | + | chr6_4:15855854-15855873 | None:intergenic | 35.0% |
| ! | ATGTGCTATTACAGCAAATG+CGG | + | chr6_4:15855982-15856001 | None:intergenic | 35.0% |
| TCTTCATGTAGGAGAAACAT+TGG | - | chr6_4:15856208-15856227 | Msa0979270:intron | 35.0% | |
| TTTACTCTCTTTGCCAAACA+TGG | + | chr6_4:15856273-15856292 | None:intergenic | 35.0% | |
| TATCAATATACCCGAGGAAT+CGG | + | chr6_4:15856357-15856376 | None:intergenic | 35.0% | |
| CTTACTTATCAATATACCCG+AGG | + | chr6_4:15856363-15856382 | None:intergenic | 35.0% | |
| AACTACTACAAACAGACCAA+AGG | - | chr6_4:15856508-15856527 | Msa0979270:intron | 35.0% | |
| TATCTAGATCACCATTGAAG+AGG | + | chr6_4:15856637-15856656 | None:intergenic | 35.0% | |
| TCTTCAATGGTGATCTAGAT+AGG | - | chr6_4:15856636-15856655 | Msa0979270:intron | 35.0% | |
| CTTCAATGGTGATCTAGATA+GGG | - | chr6_4:15856637-15856656 | Msa0979270:intron | 35.0% | |
| GCTGAATTCTCATTGAATGT+CGG | - | chr6_4:15856824-15856843 | Msa0979270:intron | 35.0% | |
| !! | TTATTTCTGTGAAGGCTTCA+AGG | - | chr6_4:15856916-15856935 | Msa0979270:intron | 35.0% |
| ! | TCGAATCGTCTTTTGTATGT+CGG | + | chr6_4:15856967-15856986 | None:intergenic | 35.0% |
| TCTGATGAAGAATCTGAACT+TGG | - | chr6_4:15857108-15857127 | Msa0979270:five_prime_UTR | 35.0% | |
| ! | TGGAACCTCCTCATGATTTT+TGG | - | chr6_4:15852173-15852192 | Msa0979270:CDS | 40.0% |
| GAAGACCAAAAATCATGAGG+AGG | + | chr6_4:15852181-15852200 | None:intergenic | 40.0% | |
| ATTGAGGTCTGTTCTGACTT+TGG | - | chr6_4:15853081-15853100 | Msa0979270:intron | 40.0% | |
| GATGAGAGATGAGTGAAAGA+TGG | + | chr6_4:15853160-15853179 | None:intergenic | 40.0% | |
| ! | AATCTAGCTCACGTTCAAAG+TGG | - | chr6_4:15853498-15853517 | Msa0979270:intron | 40.0% |
| TTGGGCTTAAAGCAAAGCAA+GGG | + | chr6_4:15853587-15853606 | None:intergenic | 40.0% | |
| CTTTCTTAGGTGCTCATCTT+GGG | + | chr6_4:15853605-15853624 | None:intergenic | 40.0% | |
| TCTTTCTTAGGTGCTCATCT+TGG | + | chr6_4:15853606-15853625 | None:intergenic | 40.0% | |
| TTACGTCTCTGACAATGAAG+TGG | + | chr6_4:15854054-15854073 | None:intergenic | 40.0% | |
| GGAAACTCAGCTATCATACT+TGG | - | chr6_4:15854243-15854262 | Msa0979270:CDS | 40.0% | |
| ! | CAGCTATCATACTTGGTCTT+TGG | - | chr6_4:15854250-15854269 | Msa0979270:intron | 40.0% |
| GGACATATTACTGTGTTGTG+AGG | - | chr6_4:15854289-15854308 | Msa0979270:intron | 40.0% | |
| CACATCACAAACTTCAGCAA+TGG | + | chr6_4:15854411-15854430 | None:intergenic | 40.0% | |
| AGCCATAAAATCAACAGCAC+TGG | + | chr6_4:15854447-15854466 | None:intergenic | 40.0% | |
| !!! | TGGCTAGTTTTGGGAATTGT+TGG | - | chr6_4:15854462-15854481 | Msa0979270:intron | 40.0% |
| AATTTCGACAACGGTCTAGA+TGG | + | chr6_4:15854869-15854888 | None:intergenic | 40.0% | |
| CCGGAGAATATTACGAAATC+AGG | - | chr6_4:15855059-15855078 | Msa0979270:intron | 40.0% | |
| ! | GTCCCATACATGCTTTTCAA+AGG | - | chr6_4:15855261-15855280 | Msa0979270:intron | 40.0% |
| CAATGAGGTCACGAAACAAA+CGG | + | chr6_4:15855293-15855312 | None:intergenic | 40.0% | |
| ! | ACAATATGTGTGCCTTTTGC+AGG | - | chr6_4:15855336-15855355 | Msa0979270:intron | 40.0% |
| CAGGAGTCTTCTTTCTTGTT+TGG | - | chr6_4:15855583-15855602 | Msa0979270:intron | 40.0% | |
| ! | CTTCTTTCTTGTTTGGCCTT+CGG | - | chr6_4:15855590-15855609 | Msa0979270:intron | 40.0% |
| AAGTTGCAACAATGTACCGA+AGG | + | chr6_4:15855609-15855628 | None:intergenic | 40.0% | |
| ! | AGCTGAGTTGAAACCATTTG+AGG | - | chr6_4:15855915-15855934 | Msa0979270:intron | 40.0% |
| ! | TGTGCTATTACAGCAAATGC+GGG | + | chr6_4:15855981-15856000 | None:intergenic | 40.0% |
| CTCATGAGTCGTGTAGTTAT+TGG | - | chr6_4:15856166-15856185 | Msa0979270:intron | 40.0% | |
| TGAGTCGTGTAGTTATTGGA+TGG | - | chr6_4:15856170-15856189 | Msa0979270:intron | 40.0% | |
| TGCAAGGAATGTCTTCATGT+AGG | - | chr6_4:15856197-15856216 | Msa0979270:intron | 40.0% | |
| GACATACAAGAAGCCATGTT+TGG | - | chr6_4:15856257-15856276 | Msa0979270:intron | 40.0% | |
| GCTTGAAGAAGACAATAAGC+TGG | + | chr6_4:15856314-15856333 | None:intergenic | 40.0% | |
| ! | CTCTATTAAAGCCGATTCCT+CGG | - | chr6_4:15856343-15856362 | Msa0979270:intron | 40.0% |
| ! | TCTATTAAAGCCGATTCCTC+GGG | - | chr6_4:15856344-15856363 | Msa0979270:intron | 40.0% |
| ! | TTGCTGTTCTAGTTGCCTTT+AGG | - | chr6_4:15856394-15856413 | Msa0979270:intron | 40.0% |
| AAATCTTTCCGTGTCTGAAG+AGG | - | chr6_4:15856592-15856611 | Msa0979270:intron | 40.0% | |
| ! | TGAAGAGGACTAACTTGCAA+AGG | + | chr6_4:15856622-15856641 | None:intergenic | 40.0% |
| TGCAAGTTAGTCCTCTTCAA+TGG | - | chr6_4:15856623-15856642 | Msa0979270:intron | 40.0% | |
| !!! | GATCAAAGAGTGCTTTTCCT+CGG | - | chr6_4:15857049-15857068 | Msa0979270:five_prime_UTR | 40.0% |
| ! | ACATCTTGGTGGGAGTGTAA+TGG | - | chr6_4:15852153-15852172 | Msa0979270:CDS | 45.0% |
| GAGTCACAAGCACTTTCTTG+TGG | - | chr6_4:15852803-15852822 | Msa0979270:intron | 45.0% | |
| GCAAAGCAAGGGTGAGTTTA+TGG | + | chr6_4:15853576-15853595 | None:intergenic | 45.0% | |
| CTTGGGCTTAAAGCAAAGCA+AGG | + | chr6_4:15853588-15853607 | None:intergenic | 45.0% | |
| GACGTAAGCACAATTGATCG+AGG | - | chr6_4:15854067-15854086 | Msa0979270:intron | 45.0% | |
| ATTGTAGGTGGTGCAGCTTA+TGG | - | chr6_4:15854489-15854508 | Msa0979270:intron | 45.0% | |
| AATCGTGGTTATGAGTTGCG+AGG | + | chr6_4:15854669-15854688 | None:intergenic | 45.0% | |
| TGGATCCTTAGGATGGAACA+TGG | - | chr6_4:15854933-15854952 | Msa0979270:CDS | 45.0% | |
| ATGGATGACCTGAGACAAGA+CGG | - | chr6_4:15855028-15855047 | Msa0979270:intron | 45.0% | |
| TCGTAATATTCTCCGGTTGG+TGG | + | chr6_4:15855055-15855074 | None:intergenic | 45.0% | |
| TGCAGGCTGCATTATATTCC+TGG | - | chr6_4:15855168-15855187 | Msa0979270:intron | 45.0% | |
| GCTGTTGTAGCAGCAATTCT+CGG | - | chr6_4:15855192-15855211 | Msa0979270:intron | 45.0% | |
| CTGTTGTAGCAGCAATTCTC+GGG | - | chr6_4:15855193-15855212 | Msa0979270:intron | 45.0% | |
| CGTTTGTTTCGTGACCTCAT+TGG | - | chr6_4:15855291-15855310 | Msa0979270:intron | 45.0% | |
| !! | TGAGTATCTTTCTCGGTGCT+CGG | - | chr6_4:15855418-15855437 | Msa0979270:intron | 45.0% |
| CTTGGAAAGCAAGATCCTTC+CGG | + | chr6_4:15855673-15855692 | None:intergenic | 45.0% | |
| ! | GTTATTGGATGGCTTGTGCA+AGG | - | chr6_4:15856181-15856200 | Msa0979270:intron | 45.0% |
| AGTTGCCTTTAGGCCCTATT+CGG | - | chr6_4:15856404-15856423 | Msa0979270:intron | 45.0% | |
| TTTGTCCGAATAGGGCCTAA+AGG | + | chr6_4:15856412-15856431 | None:intergenic | 45.0% | |
| AAGGTAGTCCTCTTCAGACA+CGG | + | chr6_4:15856603-15856622 | None:intergenic | 45.0% | |
| GAAGAGCTTGCAGAGAAACA+TGG | - | chr6_4:15857009-15857028 | Msa0979270:CDS | 45.0% | |
| !!! | TTTTTTTTAAAAAAAGAAAA+AGG | + | chr6_4:15852907-15852926 | None:intergenic | 5.0% |
| CTACTTCACGCTCTAGCGTA+TGG | + | chr6_4:15853920-15853939 | None:intergenic | 50.0% | |
| GTGCTCCATGTTCCATCCTA+AGG | + | chr6_4:15854941-15854960 | None:intergenic | 50.0% | |
| ATTGCTGCTACAACAGCACC+AGG | + | chr6_4:15855189-15855208 | None:intergenic | 50.0% | |
| AGGATAGCAAGGCCTGCAAA+AGG | + | chr6_4:15855351-15855370 | None:intergenic | 50.0% | |
| ! | CAGGCCTTGCTATCCTTCTA+TGG | - | chr6_4:15855355-15855374 | Msa0979270:intron | 50.0% |
| GTGGCCATAGAAGGATAGCA+AGG | + | chr6_4:15855362-15855381 | None:intergenic | 50.0% | |
| TGCTATCCTTCTATGGCCAC+TGG | - | chr6_4:15855362-15855381 | Msa0979270:intron | 50.0% | |
| !! | GAGTATCTTTCTCGGTGCTC+GGG | - | chr6_4:15855419-15855438 | Msa0979270:intron | 50.0% |
| GATGTTCTTGACATGCCGGA+AGG | - | chr6_4:15855655-15855674 | Msa0979270:intron | 50.0% | |
| CGGAAGGATCTTGCTTTCCA+AGG | - | chr6_4:15855671-15855690 | Msa0979270:intron | 50.0% | |
| CAGTGTCATCAGCTGCATTG+AGG | + | chr6_4:15856484-15856503 | None:intergenic | 50.0% | |
| ! | GCTAGTTTGCGATCGGATTC+GGG | + | chr6_4:15856689-15856708 | None:intergenic | 50.0% |
| !! | GGCTAGTTTGCGATCGGATT+CGG | + | chr6_4:15856690-15856709 | None:intergenic | 50.0% |
| !! | GAGTTCGGCTAGTTTGCGAT+CGG | + | chr6_4:15856696-15856715 | None:intergenic | 50.0% |
| TCTAGCCAATGCGTCGAGTT+CGG | + | chr6_4:15856711-15856730 | None:intergenic | 50.0% | |
| !! | AACTCGACGCATTGGCTAGA+AGG | - | chr6_4:15856711-15856730 | Msa0979270:intron | 50.0% |
| ! | TTGGTGGTCCGTCTTGTCTC+AGG | + | chr6_4:15855039-15855058 | None:intergenic | 55.0% |
| AGACAAGACGGACCACCAAC+CGG | - | chr6_4:15855040-15855059 | Msa0979270:intron | 55.0% | |
| GGCTGGAGTTGTTGCCTATC+AGG | - | chr6_4:15855440-15855459 | Msa0979270:intron | 55.0% | |
| AGTTTGCGATCGGATTCGGG+AGG | + | chr6_4:15856686-15856705 | None:intergenic | 55.0% | |
| ACTAGCCGAACTCGACGCAT+TGG | - | chr6_4:15856703-15856722 | Msa0979270:intron | 55.0% | |
| GCGTGAAGTAGCGAAGCGAG+TGG | - | chr6_4:15853929-15853948 | Msa0979270:CDS | 60.0% | |
| CGTGACCTCATTGGTCGCGA+AGG | - | chr6_4:15855300-15855319 | Msa0979270:intron | 60.0% | |
| AAGGGCCTTCGCGACCAATG+AGG | + | chr6_4:15855308-15855327 | None:intergenic | 60.0% | |
| TGGTCGCGAAGGCCCTTTCT+TGG | - | chr6_4:15855311-15855330 | Msa0979270:intron | 60.0% | |
| CGACAGCCAGTGGCCATAGA+AGG | + | chr6_4:15855371-15855390 | None:intergenic | 60.0% | |
| ! | CTATGGCCACTGGCTGTCGT+CGG | - | chr6_4:15855372-15855391 | Msa0979270:intron | 60.0% |
| !! | ATCTTTCTCGGTGCTCGGGC+TGG | - | chr6_4:15855423-15855442 | Msa0979270:intron | 60.0% |
| TTGCGATCGGATTCGGGAGG+AGG | + | chr6_4:15856683-15856702 | None:intergenic | 60.0% | |
| ! | AATGCGCCGACGACAGCCAG+TGG | + | chr6_4:15855381-15855400 | None:intergenic | 65.0% |
| GGCTGTCGTCGGCGCATTTC+TGG | - | chr6_4:15855383-15855402 | Msa0979270:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 15852012 | 15857195 | 15852012 | ID=Msa0979270;Name=Msa0979270 |
| chr6_4 | mRNA | 15852012 | 15857195 | 15852012 | ID=Msa0979270-mRNA-1;Parent=Msa0979270;Name=Msa0979270-mRNA-1;_AED=0.17;_eAED=0.17;_QI=160|0.77|0.9|1|0.88|0.8|10|40|567 |
| chr6_4 | exon | 15852012 | 15852277 | 15852012 | ID=Msa0979270-mRNA-1:exon:5139;Parent=Msa0979270-mRNA-1 |
| chr6_4 | exon | 15852475 | 15852715 | 15852475 | ID=Msa0979270-mRNA-1:exon:5138;Parent=Msa0979270-mRNA-1 |
| chr6_4 | exon | 15852842 | 15853004 | 15852842 | ID=Msa0979270-mRNA-1:exon:5137;Parent=Msa0979270-mRNA-1 |
| chr6_4 | exon | 15853271 | 15853412 | 15853271 | ID=Msa0979270-mRNA-1:exon:5136;Parent=Msa0979270-mRNA-1 |
| chr6_4 | exon | 15853515 | 15853621 | 15853515 | ID=Msa0979270-mRNA-1:exon:5135;Parent=Msa0979270-mRNA-1 |
| chr6_4 | exon | 15853746 | 15854034 | 15853746 | ID=Msa0979270-mRNA-1:exon:5134;Parent=Msa0979270-mRNA-1 |
| chr6_4 | exon | 15854127 | 15854263 | 15854127 | ID=Msa0979270-mRNA-1:exon:5133;Parent=Msa0979270-mRNA-1 |
| chr6_4 | exon | 15854620 | 15854815 | 15854620 | ID=Msa0979270-mRNA-1:exon:5132;Parent=Msa0979270-mRNA-1 |
| chr6_4 | exon | 15854897 | 15855005 | 15854897 | ID=Msa0979270-mRNA-1:exon:5131;Parent=Msa0979270-mRNA-1 |
| chr6_4 | exon | 15856942 | 15857195 | 15856942 | ID=Msa0979270-mRNA-1:exon:5130;Parent=Msa0979270-mRNA-1 |
| chr6_4 | five_prime_UTR | 15857036 | 15857195 | 15857036 | ID=Msa0979270-mRNA-1:five_prime_utr;Parent=Msa0979270-mRNA-1 |
| chr6_4 | CDS | 15856942 | 15857035 | 15856942 | ID=Msa0979270-mRNA-1:cds;Parent=Msa0979270-mRNA-1 |
| chr6_4 | CDS | 15854897 | 15855005 | 15854897 | ID=Msa0979270-mRNA-1:cds;Parent=Msa0979270-mRNA-1 |
| chr6_4 | CDS | 15854620 | 15854815 | 15854620 | ID=Msa0979270-mRNA-1:cds;Parent=Msa0979270-mRNA-1 |
| chr6_4 | CDS | 15854127 | 15854263 | 15854127 | ID=Msa0979270-mRNA-1:cds;Parent=Msa0979270-mRNA-1 |
| chr6_4 | CDS | 15853746 | 15854034 | 15853746 | ID=Msa0979270-mRNA-1:cds;Parent=Msa0979270-mRNA-1 |
| chr6_4 | CDS | 15853515 | 15853621 | 15853515 | ID=Msa0979270-mRNA-1:cds;Parent=Msa0979270-mRNA-1 |
| chr6_4 | CDS | 15853271 | 15853412 | 15853271 | ID=Msa0979270-mRNA-1:cds;Parent=Msa0979270-mRNA-1 |
| chr6_4 | CDS | 15852842 | 15853004 | 15852842 | ID=Msa0979270-mRNA-1:cds;Parent=Msa0979270-mRNA-1 |
| chr6_4 | CDS | 15852475 | 15852715 | 15852475 | ID=Msa0979270-mRNA-1:cds;Parent=Msa0979270-mRNA-1 |
| chr6_4 | CDS | 15852052 | 15852277 | 15852052 | ID=Msa0979270-mRNA-1:cds;Parent=Msa0979270-mRNA-1 |
| chr6_4 | three_prime_UTR | 15852012 | 15852051 | 15852012 | ID=Msa0979270-mRNA-1:three_prime_utr;Parent=Msa0979270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
