Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1419230 | sp|Q9FGS4|NADA_ARATH | 73.041 | 638 | 164 | 5 | 54 | 688 | 80 | 712 | 0.0 | 981 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1419230 | A0A072UQY1 | 96.199 | 684 | 25 | 1 | 7 | 690 | 4 | 686 | 0.0 | 1362 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005630 | Msa1419230 | 0.826679 | 2.377080e-54 | -8.615850e-47 |
| Msa0018470 | Msa1419230 | 0.803165 | 3.971053e-49 | -8.615850e-47 |
| Msa0033930 | Msa1419230 | 0.808386 | 3.176854e-50 | -8.615850e-47 |
| Msa0041780 | Msa1419230 | 0.822274 | 2.585534e-53 | -8.615850e-47 |
| Msa0049330 | Msa1419230 | 0.806595 | 7.622176e-50 | -8.615850e-47 |
| Msa0096570 | Msa1419230 | 0.830287 | 3.197344e-55 | -8.615850e-47 |
| Msa0103060 | Msa1419230 | 0.801553 | 8.527178e-49 | -8.615850e-47 |
| Msa0117300 | Msa1419230 | 0.811037 | 8.552578e-51 | -8.615850e-47 |
| Msa1349640 | Msa1419230 | 0.800092 | 1.695039e-48 | -8.615850e-47 |
| Msa1353280 | Msa1419230 | 0.847156 | 1.381787e-59 | -8.615850e-47 |
| Msa1356730 | Msa1419230 | 0.804383 | 2.217600e-49 | -8.615850e-47 |
| Msa1368660 | Msa1419230 | 0.822952 | 1.798716e-53 | -8.615850e-47 |
| Msa1381710 | Msa1419230 | 0.802293 | 6.009547e-49 | -8.615850e-47 |
| Msa1381720 | Msa1419230 | 0.817661 | 2.937445e-52 | -8.615850e-47 |
| Msa1384620 | Msa1419230 | 0.828446 | 8.952211e-55 | -8.615850e-47 |
| Msa1384980 | Msa1419230 | 0.806964 | 6.368347e-50 | -8.615850e-47 |
| Msa1388270 | Msa1419230 | 0.813320 | 2.717706e-51 | -8.615850e-47 |
| Msa1388520 | Msa1419230 | 0.801794 | 7.612064e-49 | -8.615850e-47 |
| Msa1395640 | Msa1419230 | 0.809754 | 1.618365e-50 | -8.615850e-47 |
| Msa1401000 | Msa1419230 | 0.834096 | 3.652701e-56 | -8.615850e-47 |
| Msa1413900 | Msa1419230 | 0.805014 | 1.637838e-49 | -8.615850e-47 |
| Msa1415270 | Msa1419230 | 0.805670 | 1.193150e-49 | -8.615850e-47 |
| Msa1419230 | Msa1428560 | 0.806924 | 6.494575e-50 | -8.615850e-47 |
| Msa1419230 | Msa1431180 | 0.830558 | 2.745235e-55 | -8.615850e-47 |
| Msa1419230 | Msa1432250 | 0.800191 | 1.618159e-48 | -8.615850e-47 |
| Msa1419230 | Msa1433380 | 0.804733 | 1.875173e-49 | -8.615850e-47 |
| Msa1419230 | Msa1450850 | 0.802049 | 6.746995e-49 | -8.615850e-47 |
| Msa1419230 | Msa1452940 | 0.801589 | 8.384894e-49 | -8.615850e-47 |
| Msa1419230 | Msa1459630 | 0.836242 | 1.049373e-56 | -8.615850e-47 |
| Msa0615850 | Msa1419230 | 0.800797 | 1.217793e-48 | -8.615850e-47 |
| Msa0639030 | Msa1419230 | 0.802584 | 5.234685e-49 | -8.615850e-47 |
| Msa0697600 | Msa1419230 | 0.815490 | 9.000409e-52 | -8.615850e-47 |
| Msa0698900 | Msa1419230 | 0.810000 | 1.432943e-50 | -8.615850e-47 |
| Msa0701780 | Msa1419230 | 0.838927 | 2.150033e-57 | -8.615850e-47 |
| Msa0712910 | Msa1419230 | 0.806434 | 8.241575e-50 | -8.615850e-47 |
| Msa0714060 | Msa1419230 | 0.806583 | 7.667573e-50 | -8.615850e-47 |
| Msa0714200 | Msa1419230 | 0.813925 | 1.999757e-51 | -8.615850e-47 |
| Msa0734760 | Msa1419230 | 0.810408 | 1.169921e-50 | -8.615850e-47 |
| Msa0748980 | Msa1419230 | 0.831393 | 1.712641e-55 | -8.615850e-47 |
| Msa0756440 | Msa1419230 | 0.838290 | 3.140716e-57 | -8.615850e-47 |
| Msa0773290 | Msa1419230 | 0.812422 | 4.273023e-51 | -8.615850e-47 |
| Msa0795400 | Msa1419230 | 0.809880 | 1.520448e-50 | -8.615850e-47 |
| Msa0796460 | Msa1419230 | 0.840362 | 9.101895e-58 | -8.615850e-47 |
| Msa0813630 | Msa1419230 | 0.815885 | 7.349743e-52 | -8.615850e-47 |
| Msa0825520 | Msa1419230 | 0.825163 | 5.443630e-54 | -8.615850e-47 |
| Msa0834200 | Msa1419230 | 0.806746 | 7.080855e-50 | -8.615850e-47 |
| Msa0835550 | Msa1419230 | 0.846709 | 1.831760e-59 | -8.615850e-47 |
| Msa0131090 | Msa1419230 | 0.834419 | 3.029524e-56 | -8.615850e-47 |
| Msa0143360 | Msa1419230 | 0.809410 | 1.918378e-50 | -8.615850e-47 |
| Msa0160650 | Msa1419230 | 0.805894 | 1.070883e-49 | -8.615850e-47 |
| Msa0184330 | Msa1419230 | 0.809486 | 1.848054e-50 | -8.615850e-47 |
| Msa0188500 | Msa1419230 | 0.853931 | 1.724405e-61 | -8.615850e-47 |
| Msa0200840 | Msa1419230 | 0.801636 | 8.199626e-49 | -8.615850e-47 |
| Msa0225880 | Msa1419230 | 0.831569 | 1.549718e-55 | -8.615850e-47 |
| Msa0230980 | Msa1419230 | 0.855737 | 5.161690e-62 | -8.615850e-47 |
| Msa1230190 | Msa1419230 | 0.801722 | 7.872489e-49 | -8.615850e-47 |
| Msa1244710 | Msa1419230 | 0.810609 | 1.058585e-50 | -8.615850e-47 |
| Msa1259010 | Msa1419230 | 0.961629 | 6.335632e-120 | -8.615850e-47 |
| Msa1296610 | Msa1419230 | 0.807589 | 4.695127e-50 | -8.615850e-47 |
| Msa1302780 | Msa1419230 | 0.802132 | 6.486592e-49 | -8.615850e-47 |
| Msa1330660 | Msa1419230 | 0.916468 | 1.718463e-85 | -8.615850e-47 |
| Msa0372990 | Msa1419230 | 0.834525 | 2.849535e-56 | -8.615850e-47 |
| Msa0373110 | Msa1419230 | 0.805682 | 1.186359e-49 | -8.615850e-47 |
| Msa0378670 | Msa1419230 | 0.845783 | 3.273573e-59 | -8.615850e-47 |
| Msa0378700 | Msa1419230 | 0.860992 | 1.402196e-63 | -8.615850e-47 |
| Msa0421390 | Msa1419230 | 0.811546 | 6.633535e-51 | -8.615850e-47 |
| Msa0427050 | Msa1419230 | 0.808527 | 2.964130e-50 | -8.615850e-47 |
| Msa0428330 | Msa1419230 | 0.805059 | 1.602758e-49 | -8.615850e-47 |
| Msa0431940 | Msa1419230 | 0.827820 | 1.266839e-54 | -8.615850e-47 |
| Msa0456480 | Msa1419230 | 0.800513 | 1.391183e-48 | -8.615850e-47 |
| Msa0467480 | Msa1419230 | 0.800870 | 1.176682e-48 | -8.615850e-47 |
| Msa1016130 | Msa1419230 | 0.801921 | 7.165612e-49 | -8.615850e-47 |
| Msa1038110 | Msa1419230 | 0.821648 | 3.610224e-53 | -8.615850e-47 |
| Msa1042380 | Msa1419230 | 0.805593 | 1.238754e-49 | -8.615850e-47 |
| Msa1067710 | Msa1419230 | 0.809045 | 2.297347e-50 | -8.615850e-47 |
| Msa1070830 | Msa1419230 | 0.812924 | 3.318674e-51 | -8.615850e-47 |
| Msa1071310 | Msa1419230 | 0.833545 | 5.014643e-56 | -8.615850e-47 |
| Msa1071460 | Msa1419230 | 0.817053 | 4.026287e-52 | -8.615850e-47 |
| Msa1102180 | Msa1419230 | 0.839823 | 1.258627e-57 | -8.615850e-47 |
| Msa0243820 | Msa1419230 | 0.815585 | 8.572443e-52 | -8.615850e-47 |
| Msa0260470 | Msa1419230 | 0.832941 | 7.092985e-56 | -8.615850e-47 |
| Msa0270460 | Msa1419230 | 0.847384 | 1.196550e-59 | -8.615850e-47 |
| Msa0282500 | Msa1419230 | 0.816444 | 5.512271e-52 | -8.615850e-47 |
| Msa0304110 | Msa1419230 | 0.833658 | 4.698262e-56 | -8.615850e-47 |
| Msa0309060 | Msa1419230 | 0.844854 | 5.841718e-59 | -8.615850e-47 |
| Msa0341190 | Msa1419230 | 0.842928 | 1.916105e-58 | -8.615850e-47 |
| Msa1125100 | Msa1419230 | 0.820122 | 8.104527e-53 | -8.615850e-47 |
| Msa1125150 | Msa1419230 | 0.816387 | 5.676735e-52 | -8.615850e-47 |
| Msa1129660 | Msa1419230 | 0.826265 | 2.981962e-54 | -8.615850e-47 |
| Msa1158650 | Msa1419230 | 0.802332 | 5.899329e-49 | -8.615850e-47 |
| Msa1186010 | Msa1419230 | 0.821579 | 3.745793e-53 | -8.615850e-47 |
| Msa1204390 | Msa1419230 | 0.804433 | 2.165576e-49 | -8.615850e-47 |
| Msa1205510 | Msa1419230 | 0.803865 | 2.843117e-49 | -8.615850e-47 |
| Msa1208810 | Msa1419230 | 0.923605 | 2.130068e-89 | -8.615850e-47 |
| Msa1211390 | Msa1419230 | 0.801294 | 9.635428e-49 | -8.615850e-47 |
| Msa0520810 | Msa1419230 | 0.814136 | 1.796790e-51 | -8.615850e-47 |
| Msa0523360 | Msa1419230 | 0.806604 | 7.588201e-50 | -8.615850e-47 |
| Msa0568490 | Msa1419230 | 0.806477 | 8.071966e-50 | -8.615850e-47 |
| Msa0861480 | Msa1419230 | 0.835647 | 1.485534e-56 | -8.615850e-47 |
| Msa0861560 | Msa1419230 | 0.829229 | 5.785630e-55 | -8.615850e-47 |
| Msa0864730 | Msa1419230 | 0.819456 | 1.150722e-52 | -8.615850e-47 |
| Msa0864750 | Msa1419230 | 0.819274 | 1.265621e-52 | -8.615850e-47 |
| Msa0871310 | Msa1419230 | 0.835409 | 1.706640e-56 | -8.615850e-47 |
| Msa0899730 | Msa1419230 | 0.808389 | 3.172926e-50 | -8.615850e-47 |
| Msa0946300 | Msa1419230 | 0.819731 | 9.954510e-53 | -8.615850e-47 |
| Msa0964650 | Msa1419230 | 0.817951 | 2.526721e-52 | -8.615850e-47 |
| Msa0967260 | Msa1419230 | 0.801888 | 7.278517e-49 | -8.615850e-47 |
| Msa0967670 | Msa1419230 | 0.807040 | 6.138169e-50 | -8.615850e-47 |
| Msa0979270 | Msa1419230 | 0.800136 | 1.660627e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1419230 | MtrunA17_Chr4g0058291 | 96.199 | 684 | 25 | 1 | 7 | 690 | 58 | 740 | 0.0 | 1362 |
| Msa1419230 | MtrunA17_Chr3g0123541 | 57.895 | 133 | 55 | 1 | 63 | 194 | 62 | 194 | 3.33e-48 | 168 |
| Msa1419230 | MtrunA17_Chr1g0170001 | 37.226 | 137 | 83 | 3 | 63 | 198 | 79 | 213 | 1.12e-16 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1419230 | AT5G50210.1 | 73.041 | 638 | 164 | 5 | 54 | 688 | 80 | 712 | 0.0 | 981 |
| Msa1419230 | AT1G67810.1 | 49.730 | 185 | 74 | 2 | 29 | 195 | 27 | 210 | 2.10e-53 | 184 |
| Msa1419230 | AT4G26500.1 | 35.338 | 133 | 81 | 2 | 63 | 193 | 87 | 216 | 5.37e-14 | 74.7 |
Find 186 sgRNAs with CRISPR-Local
Find 384 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTACACTTATTATTATTT+TGG | 0.168939 | tig0024683:-52360 | Msa1419230:five_prime_UTR |
| ATGATCATCACTTCCCCTTT+TGG | 0.185849 | tig0024683:-52452 | Msa1419230:five_prime_UTR |
| TGAATGAAATAGCAGCATTT+TGG | 0.206258 | tig0024683:-47102 | Msa1419230:three_prime_UTR |
| AGGCTCCACCTCGAATATTT+TGG | 0.208556 | tig0024683:-48401 | Msa1419230:CDS |
| TTTGCACATGAGGAACTTTC+AGG | 0.232940 | tig0024683:-47534 | Msa1419230:intron |
| GTTAAAATGCCTTGGACTTC+AGG | 0.242578 | tig0024683:+49718 | None:intergenic |
| AGACAGGGTTCAAGAATCTT+TGG | 0.276598 | tig0024683:-48368 | Msa1419230:CDS |
| AAGTTCCTCATGTGCAAAAT+TGG | 0.290006 | tig0024683:+47539 | None:intergenic |
| CAATCTTCCACTGTCATATT+AGG | 0.291601 | tig0024683:+47385 | None:intergenic |
| ATTCTGTTCCTAAAACAAAT+TGG | 0.292543 | tig0024683:+48323 | None:intergenic |
| CCTTGAGAAGAGGACTTTGC+AGG | 0.303264 | tig0024683:+48253 | None:intergenic |
| GGAGCAGGAAATGAAGGTTT+TGG | 0.306958 | tig0024683:+52125 | None:intergenic |
| TGGGCTGTACAGCGAGAGTA+TGG | 0.309210 | tig0024683:-51927 | Msa1419230:CDS |
| GGGGAGGGTTGTTCCATTCA+TGG | 0.314609 | tig0024683:-48106 | Msa1419230:CDS |
| ATCTAAACAACCAGCTTCTC+TGG | 0.317528 | tig0024683:+47325 | None:intergenic |
| TACCAGGAACTGGTCGTTCT+AGG | 0.329579 | tig0024683:-51738 | Msa1419230:CDS |
| TGACTAGTGAATCAGATATA+TGG | 0.338796 | tig0024683:+49668 | None:intergenic |
| CTCACTTTCACAACCTCTTC+CGG | 0.342370 | tig0024683:+51793 | None:intergenic |
| TTAATCTCACCTTCCCTTCA+CGG | 0.345527 | tig0024683:+51887 | None:intergenic |
| GAAATTGACTCTGACGAAAC+TGG | 0.354905 | tig0024683:+48202 | None:intergenic |
| GGTTTGGGTGCTTGATGGGT+TGG | 0.356345 | tig0024683:-51818 | Msa1419230:CDS |
| AGCCGCTTCATTCGGTCTGC+TGG | 0.362125 | tig0024683:+52015 | None:intergenic |
| TCTGCCACGGATTGGCCATT+TGG | 0.362990 | tig0024683:+47575 | None:intergenic |
| GTGCTGAAGGAGAAGAAAAT+TGG | 0.363638 | tig0024683:-49766 | Msa1419230:CDS |
| GATTTGAATAGAGGCTGGTT+TGG | 0.370823 | tig0024683:+52156 | None:intergenic |
| GGCAGATTCAGCAGTCAAAA+TGG | 0.377543 | tig0024683:-49644 | Msa1419230:CDS |
| ATCTGATCAACCAGCTTCTC+AGG | 0.383048 | tig0024683:+47416 | None:intergenic |
| TGCAGCTACCTCTACTTATA+TGG | 0.385223 | tig0024683:-49269 | Msa1419230:CDS |
| GGTTGAAGAATGAAACGTTT+TGG | 0.385253 | tig0024683:+52177 | None:intergenic |
| TGTTTGGTTTGGGTGCTTGA+TGG | 0.386625 | tig0024683:-51823 | Msa1419230:CDS |
| CATATATAACATTATTTCTC+AGG | 0.394993 | tig0024683:+47298 | None:intergenic |
| TTTGGTTTAAGAACATGGTT+TGG | 0.397764 | tig0024683:+52195 | None:intergenic |
| TCTTTGATTGTTACTGATGA+TGG | 0.410818 | tig0024683:-51619 | Msa1419230:CDS |
| ATTGGTGTGATAAACTATTC+TGG | 0.412516 | tig0024683:-47366 | Msa1419230:three_prime_UTR |
| ACAAAACCTACCTTCATGTA+TGG | 0.422091 | tig0024683:+48067 | None:intergenic |
| AATAATAATAAGTGTAAGAG+TGG | 0.424429 | tig0024683:+52364 | None:intergenic |
| ACCCTAGAACGACCAGTTCC+TGG | 0.425445 | tig0024683:+51736 | None:intergenic |
| AATGTTGGTTTACCAGGAAC+TGG | 0.427576 | tig0024683:-51748 | Msa1419230:CDS |
| GATTTGAGAGATTTGAATAG+AGG | 0.428384 | tig0024683:+52147 | None:intergenic |
| GAAAGTGAGTACTGAGGATT+TGG | 0.429586 | tig0024683:-51779 | Msa1419230:CDS |
| TTGGTTTAAGAACATGGTTT+GGG | 0.435668 | tig0024683:+52196 | None:intergenic |
| CACGGTCAGACTTTGTTGTA+TGG | 0.437728 | tig0024683:-47207 | Msa1419230:three_prime_UTR |
| GTAGGTGACGGCAAACTGTT+AGG | 0.438073 | tig0024683:+47654 | None:intergenic |
| GAATCAATGTTAGGCCCAAA+AGG | 0.445457 | tig0024683:+52437 | None:intergenic |
| GGTCTTAATGTTGGTTTACC+AGG | 0.445477 | tig0024683:-51754 | Msa1419230:CDS |
| GATGAAGTACAGGTTATTGT+TGG | 0.446010 | tig0024683:+49154 | None:intergenic |
| CCATACCATATGCTCAAATC+AGG | 0.448452 | tig0024683:+48956 | None:intergenic |
| CTAATATGACAGTGGAAGAT+TGG | 0.459068 | tig0024683:-47384 | Msa1419230:exon |
| TGGAAAAGCTACGGTGGAGC+AGG | 0.460720 | tig0024683:+52110 | None:intergenic |
| GAGCAGCTGTTAAAATGCCT+TGG | 0.460865 | tig0024683:+49710 | None:intergenic |
| GTTTGGTTTGGGTGCTTGAT+GGG | 0.461263 | tig0024683:-51822 | Msa1419230:CDS |
| TGAGAGATTTGAATAGAGGC+TGG | 0.462920 | tig0024683:+52151 | None:intergenic |
| AGGAGTTTCAAAGGAGCGAC+AGG | 0.462977 | tig0024683:+52075 | None:intergenic |
| AGAAGCACAGCCACCATGAA+TGG | 0.464643 | tig0024683:+48093 | None:intergenic |
| AAGTGCCTGATTTGAGCATA+TGG | 0.464968 | tig0024683:-48961 | Msa1419230:CDS |
| AAAGGCATGGAATCAATGTT+AGG | 0.467124 | tig0024683:+52428 | None:intergenic |
| GGTGCTTGATGGGTTGGAAC+CGG | 0.473099 | tig0024683:-51812 | Msa1419230:CDS |
| CAAAGGAGCGACAGGGTTGG+TGG | 0.480530 | tig0024683:+52083 | None:intergenic |
| AACCAACCTGTAGAATAGTC+TGG | 0.480953 | tig0024683:+49122 | None:intergenic |
| GTAGCTACTCCTGGTACAAC+AGG | 0.481220 | tig0024683:+48130 | None:intergenic |
| TGATGATGGTGTTGTTCCTA+AGG | 0.482163 | tig0024683:-51605 | Msa1419230:CDS |
| AGTGTAGCAGCCGCTTCATT+CGG | 0.484630 | tig0024683:+52007 | None:intergenic |
| TGGTTTGGGTTGATAGAGAG+TGG | 0.488000 | tig0024683:+52210 | None:intergenic |
| CGTTAAAACCAGCTTGATCA+AGG | 0.488925 | tig0024683:+49554 | None:intergenic |
| ATTCTTCATCCCAGAGAAGC+TGG | 0.489950 | tig0024683:-47335 | Msa1419230:three_prime_UTR |
| TTCAAGTTGCAGACTCCAAA+TGG | 0.492746 | tig0024683:-47590 | Msa1419230:CDS |
| TCTCTCCAGGTACCTCAAGA+TGG | 0.493069 | tig0024683:+48470 | None:intergenic |
| TGAGCATATTGGATGTTCTC+TGG | 0.494907 | tig0024683:-49299 | Msa1419230:CDS |
| GATAACATTTGATGAAGTAC+AGG | 0.497912 | tig0024683:+49144 | None:intergenic |
| TTCCCCAATGAGCTAAAAGT+TGG | 0.498614 | tig0024683:-49802 | Msa1419230:CDS |
| TTTCTTCGTCGGGTAGGTGA+CGG | 0.499826 | tig0024683:+47642 | None:intergenic |
| TATCACAAAACATACTAGTT+CGG | 0.500379 | tig0024683:-47142 | Msa1419230:three_prime_UTR |
| ACCAGGAACTGGTCGTTCTA+GGG | 0.500442 | tig0024683:-51737 | Msa1419230:CDS |
| TATAAAGTCCAAAATATTCG+AGG | 0.501825 | tig0024683:+48393 | None:intergenic |
| AGAATGTCGGATGAGCATAT+TGG | 0.504121 | tig0024683:-49310 | Msa1419230:CDS |
| GATTTGGTAGGTCTTAATGT+TGG | 0.504922 | tig0024683:-51763 | Msa1419230:CDS |
| GTAACAATCAAAGACGGAAA+AGG | 0.507347 | tig0024683:+51628 | None:intergenic |
| TGTTATCCAGACTATTCTAC+AGG | 0.508641 | tig0024683:-49128 | Msa1419230:intron |
| GCAGTCAAAATGGCAAAAGC+TGG | 0.511039 | tig0024683:-49634 | Msa1419230:CDS |
| TGATGGGTTGGAACCGGAAG+AGG | 0.512717 | tig0024683:-51806 | Msa1419230:CDS |
| AATCAATGTTAGGCCCAAAA+GGG | 0.515369 | tig0024683:+52438 | None:intergenic |
| TGAAGGGAAGGTGAGATTAA+CGG | 0.517092 | tig0024683:-51884 | Msa1419230:CDS |
| GCCAATGAAAACATCTCTCC+AGG | 0.517924 | tig0024683:+48457 | None:intergenic |
| ATCATGCTTCCTGTTGTACC+AGG | 0.518289 | tig0024683:-48139 | Msa1419230:CDS |
| GATAAACTATTCTGGTTGAT+CGG | 0.518751 | tig0024683:-47358 | Msa1419230:three_prime_UTR |
| GAATCAGATATATGGATATG+AGG | 0.520531 | tig0024683:+49676 | None:intergenic |
| CGGTCATTACTGTCATCTGT+TGG | 0.522020 | tig0024683:+48894 | None:intergenic |
| CGCAGGGCTAACACCACCTA+TGG | 0.523956 | tig0024683:-51983 | Msa1419230:CDS |
| TTGTACCAGGAGTAGCTACC+GGG | 0.525696 | tig0024683:-48126 | Msa1419230:CDS |
| CTCTCCAGGTACCTCAAGAT+GGG | 0.525738 | tig0024683:+48471 | None:intergenic |
| ATGCAAATTCATAACAGTGC+TGG | 0.527687 | tig0024683:-49611 | Msa1419230:CDS |
| CCCTCCCCGGTAGCTACTCC+TGG | 0.528250 | tig0024683:+48121 | None:intergenic |
| TACGGTGGAGCAGGAAATGA+AGG | 0.530277 | tig0024683:+52119 | None:intergenic |
| GTATGGGCCTGATTCTTACA+TGG | 0.530520 | tig0024683:-48939 | Msa1419230:CDS |
| ATAAATTGTGTTATCATCAC+AGG | 0.536611 | tig0024683:+52319 | None:intergenic |
| GAGAAAACTTACCTCACAAA+GGG | 0.537725 | tig0024683:+52475 | None:intergenic |
| TGTTGACACGAACCGAGTCA+TGG | 0.538158 | tig0024683:-51947 | Msa1419230:CDS |
| ATCCTACGTCTGCCACGGAT+TGG | 0.539464 | tig0024683:+47567 | None:intergenic |
| ATTAACGGCGGATAGTGATT+CGG | 0.540324 | tig0024683:-51869 | Msa1419230:CDS |
| GCTTCAGCATAACTACCCTT+AGG | 0.540381 | tig0024683:+51589 | None:intergenic |
| CTGATTTGAGCATATGGTAT+GGG | 0.543849 | tig0024683:-48955 | Msa1419230:CDS |
| GTACCTCAAGATGGGCAGTA+AGG | 0.545529 | tig0024683:+48479 | None:intergenic |
| GGTTGCTGAGAGAGAAGGGA+AGG | 0.547309 | tig0024683:-51662 | Msa1419230:CDS |
| TATGGGCCTGATTCTTACAT+GGG | 0.548581 | tig0024683:-48938 | Msa1419230:CDS |
| TATATCTGATTCACTAGTCA+TGG | 0.550454 | tig0024683:-49665 | Msa1419230:CDS |
| GACAGTAATGACCGATGAAG+AGG | 0.550512 | tig0024683:-48885 | Msa1419230:CDS |
| ATTCATAACAGTGCTGGGTG+TGG | 0.553575 | tig0024683:-49605 | Msa1419230:CDS |
| ACTGCCCATCTTGAGGTACC+TGG | 0.558961 | tig0024683:-48475 | Msa1419230:CDS |
| GGTTATAGTAGTTGCAGCCA+TGG | 0.559904 | tig0024683:+52242 | None:intergenic |
| ACAGAGTCTACATTGTGCGC+AGG | 0.562187 | tig0024683:+48848 | None:intergenic |
| GTTGACACGAACCGAGTCAT+GGG | 0.562213 | tig0024683:-51946 | Msa1419230:CDS |
| AATTGGTTGCTGAGAGAGAA+GGG | 0.566535 | tig0024683:-51666 | Msa1419230:CDS |
| TGCAAATTCATAACAGTGCT+GGG | 0.566616 | tig0024683:-49610 | Msa1419230:CDS |
| GAAACTCCTCCGTCGTCTCG+CGG | 0.567242 | tig0024683:-52061 | Msa1419230:CDS |
| ACACGCGATGTCTCCTCCAT+AGG | 0.569627 | tig0024683:+51967 | None:intergenic |
| GGCAATGGAAGCAAAGAGAA+GGG | 0.571709 | tig0024683:-48437 | Msa1419230:CDS |
| ATGAATGGAACAACCCTCCC+CGG | 0.571761 | tig0024683:+48108 | None:intergenic |
| GATAGAGAGTGGAAACAGAG+AGG | 0.572449 | tig0024683:+52221 | None:intergenic |
| TCTAAACAACCAGCTTCTCT+GGG | 0.572709 | tig0024683:+47326 | None:intergenic |
| TATCGCAGCAACCTCTTCAT+CGG | 0.572717 | tig0024683:+48874 | None:intergenic |
| CGCGATGTCTCCTCCATAGG+TGG | 0.574176 | tig0024683:+51970 | None:intergenic |
| ACTTCAACTGAATTTAGACT+CGG | 0.574550 | tig0024683:+48169 | None:intergenic |
| GGGTAGTTATGCTGAAGCCC+AGG | 0.575484 | tig0024683:-51584 | Msa1419230:intron |
| GGAGCGAAAATAGAGAAAGA+AGG | 0.576606 | tig0024683:+52284 | None:intergenic |
| TTCACATCCTACGTCTGCCA+CGG | 0.577730 | tig0024683:+47562 | None:intergenic |
| ATTCCTTACTGCCCATCTTG+AGG | 0.578346 | tig0024683:-48482 | Msa1419230:CDS |
| GTTGTACCAGGAGTAGCTAC+CGG | 0.579533 | tig0024683:-48127 | Msa1419230:CDS |
| GAAGATCGACCGTGAAGGGA+AGG | 0.579807 | tig0024683:-51896 | Msa1419230:CDS |
| TAACACTAAATTAGAGACAA+AGG | 0.583383 | tig0024683:-49197 | Msa1419230:CDS |
| AGGTGAAGATCGACCGTGAA+GGG | 0.584569 | tig0024683:-51900 | Msa1419230:CDS |
| TAACAGCTGCTCAGAAGCAG+TGG | 0.584641 | tig0024683:-49699 | Msa1419230:CDS |
| AGCCAGCAGACCGAATGAAG+CGG | 0.585883 | tig0024683:-52017 | Msa1419230:CDS |
| CCTGCAAAGTCCTCTTCTCA+AGG | 0.587449 | tig0024683:-48253 | Msa1419230:CDS |
| CAATTGGTTGCTGAGAGAGA+AGG | 0.587629 | tig0024683:-51667 | Msa1419230:CDS |
| TGCTTCTTGTCCATACATGA+AGG | 0.588521 | tig0024683:-48077 | Msa1419230:intron |
| AAAACCAGCTTGATCAAGGA+TGG | 0.589043 | tig0024683:+49558 | None:intergenic |
| ATAATAATAAGTGTAAGAGT+GGG | 0.589690 | tig0024683:+52365 | None:intergenic |
| CTTCAACTGAATTTAGACTC+GGG | 0.590743 | tig0024683:+48170 | None:intergenic |
| ATGGGCCTGATTCTTACATG+GGG | 0.593015 | tig0024683:-48937 | Msa1419230:CDS |
| ATAATAAGTGTAAGAGTGGG+AGG | 0.594684 | tig0024683:+52368 | None:intergenic |
| AGACGACGGAGGAGTTTCAA+AGG | 0.595580 | tig0024683:+52066 | None:intergenic |
| AAGATACTCCATATAAGTAG+AGG | 0.599338 | tig0024683:+49261 | None:intergenic |
| AAAGAAGTAGACTTAGAAGC+TGG | 0.599596 | tig0024683:+49235 | None:intergenic |
| TGGCAATGGAAGCAAAGAGA+AGG | 0.600814 | tig0024683:-48438 | Msa1419230:CDS |
| CCTGATTTGAGCATATGGTA+TGG | 0.601263 | tig0024683:-48956 | Msa1419230:CDS |
| ACCTTAAAATAGTGAAGTCG+TGG | 0.606778 | tig0024683:+48812 | None:intergenic |
| GATGATGGTGTTGTTCCTAA+GGG | 0.610414 | tig0024683:-51604 | Msa1419230:CDS |
| GACTCCAAATGGCCAATCCG+TGG | 0.610864 | tig0024683:-47579 | Msa1419230:CDS |
| GTGAGTACTGAGGATTTGGT+AGG | 0.611581 | tig0024683:-51775 | Msa1419230:CDS |
| AGTGATTCGGAGATAACGAA+AGG | 0.615615 | tig0024683:-51856 | Msa1419230:CDS |
| TCGCTGTACAGCCCATGACT+CGG | 0.618275 | tig0024683:+51935 | None:intergenic |
| GAAACTCCTCCGCGAGACGA+CGG | 0.619101 | tig0024683:+52052 | None:intergenic |
| AGTCTAAATTCAGTTGAAGT+CGG | 0.620202 | tig0024683:-48166 | Msa1419230:CDS |
| TGAACTAGTCAATGTGCTGA+AGG | 0.626645 | tig0024683:-49779 | Msa1419230:CDS |
| TTTCAAAGGAGCGACAGGGT+TGG | 0.627010 | tig0024683:+52080 | None:intergenic |
| TGAGAAAACTTACCTCACAA+AGG | 0.627130 | tig0024683:+52474 | None:intergenic |
| TTCAACTGAATTTAGACTCG+GGG | 0.629858 | tig0024683:+48171 | None:intergenic |
| AAAGTCCAAAATATTCGAGG+TGG | 0.631656 | tig0024683:+48396 | None:intergenic |
| CTGTACAGCGAGAGTATGGG+TGG | 0.635356 | tig0024683:-51923 | Msa1419230:CDS |
| GGGCTGTACAGCGAGAGTAT+GGG | 0.637385 | tig0024683:-51926 | Msa1419230:CDS |
| TACAGCGAGAGTATGGGTGG+AGG | 0.640194 | tig0024683:-51920 | Msa1419230:CDS |
| AGGGCTAACACCACCTATGG+AGG | 0.642582 | tig0024683:-51980 | Msa1419230:CDS |
| AGCGGCTGCTACACTACGCA+GGG | 0.644427 | tig0024683:-51999 | Msa1419230:CDS |
| ATCAATGTTAGGCCCAAAAG+GGG | 0.644932 | tig0024683:+52439 | None:intergenic |
| GGAGTTTCAAAGGAGCGACA+GGG | 0.646874 | tig0024683:+52076 | None:intergenic |
| CAATGGAAGCAAAGAGAAGG+GGG | 0.651997 | tig0024683:-48435 | Msa1419230:CDS |
| ACTCCTCCGTCGTCTCGCGG+AGG | 0.652861 | tig0024683:-52058 | Msa1419230:CDS |
| TCATCAGTAACAATCAAAGA+CGG | 0.655468 | tig0024683:+51622 | None:intergenic |
| GAGGTGAAGATCGACCGTGA+AGG | 0.655638 | tig0024683:-51901 | Msa1419230:CDS |
| GGTTGACGTGTATAGAATGT+CGG | 0.656142 | tig0024683:-49323 | Msa1419230:CDS |
| GGTTGTGAAAGTGAGTACTG+AGG | 0.656975 | tig0024683:-51785 | Msa1419230:CDS |
| GCAATGGAAGCAAAGAGAAG+GGG | 0.657387 | tig0024683:-48436 | Msa1419230:CDS |
| TACATGGATCCTGAAGTCCA+AGG | 0.660452 | tig0024683:-49727 | Msa1419230:CDS |
| TTTGGACTTTATAAAAGACA+GGG | 0.664157 | tig0024683:-48383 | Msa1419230:CDS |
| GGCCAATCCGTGGCAGACGT+AGG | 0.665345 | tig0024683:-47569 | Msa1419230:CDS |
| ACGATAGGTAATAGTTACCA+CGG | 0.665923 | tig0024683:-47225 | Msa1419230:three_prime_UTR |
| GTCGTTCTAGGGTGAATACG+TGG | 0.666480 | tig0024683:-51726 | Msa1419230:CDS |
| GCTGGGTGTGGACTTCATGT+CGG | 0.666504 | tig0024683:-49593 | Msa1419230:CDS |
| GATTACTGCAATTGTCGCAG+CGG | 0.667769 | tig0024683:-48293 | Msa1419230:CDS |
| CTTCACACCTAATATGACAG+TGG | 0.706438 | tig0024683:-47392 | Msa1419230:exon |
| GAGGGTTGTTCCATTCATGG+TGG | 0.715274 | tig0024683:-48103 | Msa1419230:CDS |
| ACCAGGAGTAGCTACCGGGG+AGG | 0.721609 | tig0024683:-48122 | Msa1419230:CDS |
| CATACAACAAAGTCTGACCG+TGG | 0.723002 | tig0024683:+47208 | None:intergenic |
| AGGGAAGGTGAGATTAACGG+CGG | 0.747863 | tig0024683:-51881 | Msa1419230:CDS |
| TGGGCCTGATTCTTACATGG+GGG | 0.757861 | tig0024683:-48936 | Msa1419230:CDS |
| TGTACCAGGAGTAGCTACCG+GGG | 0.783130 | tig0024683:-48125 | Msa1419230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAACATGATATTAAATAAT+TGG | - | tig0024683:48306-48325 | Msa1419230:CDS | 10.0% |
| !! | ATATTAAATAATTGGATATT+GGG | - | tig0024683:48314-48333 | Msa1419230:CDS | 10.0% |
| !! | AAAATATAAATACAGAAAAA+TGG | + | tig0024683:49538-49557 | None:intergenic | 10.0% |
| !!! | ATTTTTCTGTATTTATATTT+TGG | - | tig0024683:49537-49556 | Msa1419230:intron | 10.0% |
| !!! | TCTTACACTTATTATTATTT+TGG | - | tig0024683:47201-47220 | Msa1419230:three_prime_UTR | 15.0% |
| !! | TTTAAATTTATTATCGACAT+CGG | + | tig0024683:48088-48107 | None:intergenic | 15.0% |
| !! | GATATTAAATAATTGGATAT+TGG | - | tig0024683:48313-48332 | Msa1419230:CDS | 15.0% |
| !! | AACTTGAAAAATGTATTTAT+AGG | - | tig0024683:49265-49284 | Msa1419230:CDS | 15.0% |
| !! | GGAAAAAAAATATGAAAAAA+TGG | + | tig0024683:50897-50916 | None:intergenic | 15.0% |
| !! | AAAAACTTTATTGAATAGAA+TGG | + | tig0024683:50930-50949 | None:intergenic | 15.0% |
| !! | ATAATAATAAGTGTAAGAGT+GGG | + | tig0024683:47199-47218 | None:intergenic | 20.0% |
| !! | AATAATAATAAGTGTAAGAG+TGG | + | tig0024683:47200-47219 | None:intergenic | 20.0% |
| !! | TTCTATTACTGTTATCATTA+GGG | - | tig0024683:48379-48398 | Msa1419230:CDS | 20.0% |
| !! | ATGTTTGTTTATATTGTTGT+TGG | - | tig0024683:48450-48469 | Msa1419230:CDS | 20.0% |
| !!! | GTATTTTTAACAATACTTTC+CGG | - | tig0024683:48845-48864 | Msa1419230:CDS | 20.0% |
| !! | TTGAAAAATGTATTTATAGG+TGG | - | tig0024683:49268-49287 | Msa1419230:CDS | 20.0% |
| !!! | TCAAATTCTAAGATAGTTTA+AGG | - | tig0024683:49350-49369 | Msa1419230:intron | 20.0% |
| !! | TTATCATCCTTGATTAATAT+GGG | + | tig0024683:49414-49433 | None:intergenic | 20.0% |
| !! | TTTATCATCCTTGATTAATA+TGG | + | tig0024683:49415-49434 | None:intergenic | 20.0% |
| !! | ATTAGAAGTTTAATACTTTC+AGG | + | tig0024683:49706-49725 | None:intergenic | 20.0% |
| !! | GCTAAATTTATAATCAACTT+AGG | - | tig0024683:51538-51557 | Msa1419230:intron | 20.0% |
| !! | CATATAAGTGTTTAAACATA+AGG | + | tig0024683:51731-51750 | None:intergenic | 20.0% |
| !! | CTTATGTTTAAACACTTATA+TGG | - | tig0024683:51729-51748 | Msa1419230:CDS | 20.0% |
| !! | CTATAATCGTTTACTTAAAT+TGG | - | tig0024683:51764-51783 | Msa1419230:CDS | 20.0% |
| !! | TCTATTACTATGCAAATTAA+AGG | + | tig0024683:51803-51822 | None:intergenic | 20.0% |
| !!! | AAAGGTTAATTAAAAGTACA+TGG | + | tig0024683:52096-52115 | None:intergenic | 20.0% |
| !!! | TGTACTTTTAATTAACCTTT+TGG | - | tig0024683:52096-52115 | Msa1419230:CDS | 20.0% |
| !!! | CATATATAACATTATTTCTC+AGG | + | tig0024683:52266-52285 | None:intergenic | 20.0% |
| !!! | ATTTCAATTTTTTCAAACTG+CGG | + | tig0024683:52492-52511 | None:intergenic | 20.0% |
| !!! | AAAAAGCACTTTTGCTAAAA+AGG | + | tig0024683:47154-47173 | None:intergenic | 25.0% |
| ! | ATAAATTGTGTTATCATCAC+AGG | + | tig0024683:47245-47264 | None:intergenic | 25.0% |
| ! | GCACATATATTTATCAGATT+AGG | + | tig0024683:48182-48201 | None:intergenic | 25.0% |
| ! | GATAAATATATGTGCTTCAT+TGG | - | tig0024683:48187-48206 | Msa1419230:CDS | 25.0% |
| ! | GTTCTATTACTGTTATCATT+AGG | - | tig0024683:48378-48397 | Msa1419230:CDS | 25.0% |
| !!! | TGAATTTTGAGTTTGATCTT+GGG | + | tig0024683:48514-48533 | None:intergenic | 25.0% |
| !!! | TTGAATTTTGAGTTTGATCT+TGG | + | tig0024683:48515-48534 | None:intergenic | 25.0% |
| ! | TTGTTATCTTAGGATATTAG+TGG | - | tig0024683:48678-48697 | Msa1419230:intron | 25.0% |
| ! | ATATAGAATCTCTCCAAAAA+AGG | - | tig0024683:48733-48752 | Msa1419230:intron | 25.0% |
| ! | TATAGAATCTCTCCAAAAAA+GGG | - | tig0024683:48734-48753 | Msa1419230:intron | 25.0% |
| !!! | GTCTTAATTTGTTAAAACAC+CGG | + | tig0024683:48867-48886 | None:intergenic | 25.0% |
| !!! | TTCTGTTTTTATCTTGATTG+TGG | - | tig0024683:48918-48937 | Msa1419230:CDS | 25.0% |
| !! | ACTTTCCTATTCAATTTTGT+AGG | - | tig0024683:49108-49127 | Msa1419230:intron | 25.0% |
| !! | CTTTCCTATTCAATTTTGTA+GGG | - | tig0024683:49109-49128 | Msa1419230:intron | 25.0% |
| !! | TGTTATTTGAGTCTATCTAT+TGG | - | tig0024683:49163-49182 | Msa1419230:CDS | 25.0% |
| ! | GTTATTTGAGTCTATCTATT+GGG | - | tig0024683:49164-49183 | Msa1419230:CDS | 25.0% |
| ! | AAAAATGTATTTATAGGTGG+TGG | - | tig0024683:49271-49290 | Msa1419230:CDS | 25.0% |
| !! | TCGTACAAAATTGACTTATA+AGG | + | tig0024683:49314-49333 | None:intergenic | 25.0% |
| ! | AATCAAGGATGATAAAGAAA+TGG | - | tig0024683:49419-49438 | Msa1419230:intron | 25.0% |
| ! | ATCAAGGATGATAAAGAAAT+GGG | - | tig0024683:49420-49439 | Msa1419230:intron | 25.0% |
| !!! | GAGGTTTTAAGTATTTCTTT+TGG | - | tig0024683:49508-49527 | Msa1419230:intron | 25.0% |
| ! | TTACTTCACATTATGATGAA+TGG | - | tig0024683:49636-49655 | Msa1419230:CDS | 25.0% |
| !! | TGATACTTGTTAATCTTTAG+CGG | - | tig0024683:50190-50209 | Msa1419230:intron | 25.0% |
| ! | TAACACTAAATTAGAGACAA+AGG | - | tig0024683:50364-50383 | Msa1419230:intron | 25.0% |
| !! | ATATTTATCTCCTTTTATGC+AGG | - | tig0024683:50568-50587 | Msa1419230:intron | 25.0% |
| !! | TTTCTTGTATTCACCATTTT+AGG | - | tig0024683:50852-50871 | Msa1419230:intron | 25.0% |
| ! | TATAAAGTCCAAAATATTCG+AGG | + | tig0024683:51171-51190 | None:intergenic | 25.0% |
| !! | TTTTGGACTTTATAAAAGAC+AGG | - | tig0024683:51177-51196 | Msa1419230:intron | 25.0% |
| ! | TTTGGACTTTATAAAAGACA+GGG | - | tig0024683:51178-51197 | Msa1419230:intron | 25.0% |
| ! | ATTCTGTTCCTAAAACAAAT+TGG | + | tig0024683:51241-51260 | None:intergenic | 25.0% |
| ! | AATATGTTGAAAACATCTCA+TGG | + | tig0024683:51641-51660 | None:intergenic | 25.0% |
| ! | ACTTAAATTGGTTATCCAAA+CGG | - | tig0024683:51776-51795 | Msa1419230:CDS | 25.0% |
| !! | TAATTTGCATAGTAATAGAG+CGG | - | tig0024683:51804-51823 | Msa1419230:CDS | 25.0% |
| ! | TATCACAAAACATACTAGTT+CGG | - | tig0024683:52419-52438 | Msa1419230:five_prime_UTR | 25.0% |
| TTGGTTTAAGAACATGGTTT+GGG | + | tig0024683:47368-47387 | None:intergenic | 30.0% | |
| ! | TTTGGTTTAAGAACATGGTT+TGG | + | tig0024683:47369-47388 | None:intergenic | 30.0% |
| !!! | AACGTTTTGGTTTAAGAACA+TGG | + | tig0024683:47374-47393 | None:intergenic | 30.0% |
| GATTTGAGAGATTTGAATAG+AGG | + | tig0024683:47417-47436 | None:intergenic | 30.0% | |
| GCAAAAAAAGACGAAACAAT+TGG | - | tig0024683:47878-47897 | Msa1419230:intron | 30.0% | |
| TCATCAGTAACAATCAAAGA+CGG | + | tig0024683:47942-47961 | None:intergenic | 30.0% | |
| TCTTTGATTGTTACTGATGA+TGG | - | tig0024683:47942-47961 | Msa1419230:intron | 30.0% | |
| AATAAAGACAGTACTAACCT+GGG | + | tig0024683:47997-48016 | None:intergenic | 30.0% | |
| AAATAAAGACAGTACTAACC+TGG | + | tig0024683:47998-48017 | None:intergenic | 30.0% | |
| TTCAGCATACTTATATGTGT+CGG | - | tig0024683:48121-48140 | Msa1419230:CDS | 30.0% | |
| TATTACTGTTATCATTAGGG+AGG | - | tig0024683:48382-48401 | Msa1419230:CDS | 30.0% | |
| ATTACTGTTATCATTAGGGA+GGG | - | tig0024683:48383-48402 | Msa1419230:CDS | 30.0% | |
| TAGTGATTAACACATACATC+AGG | - | tig0024683:48475-48494 | Msa1419230:CDS | 30.0% | |
| AGTGATTAACACATACATCA+GGG | - | tig0024683:48476-48495 | Msa1419230:CDS | 30.0% | |
| TTCAACTTAAAATGCACTCA+AGG | - | tig0024683:48530-48549 | Msa1419230:CDS | 30.0% | |
| TCAACTTAAAATGCACTCAA+GGG | - | tig0024683:48531-48550 | Msa1419230:CDS | 30.0% | |
| !! | ATGAGGACATTTGTTATCTT+AGG | - | tig0024683:48668-48687 | Msa1419230:intron | 30.0% |
| TTATCTTAGGATATTAGTGG+TGG | - | tig0024683:48681-48700 | Msa1419230:intron | 30.0% | |
| TATCTTAGGATATTAGTGGT+GGG | - | tig0024683:48682-48701 | Msa1419230:intron | 30.0% | |
| ATAAGCATCAAATTCTTGCA+AGG | + | tig0024683:48789-48808 | None:intergenic | 30.0% | |
| TCACTTATCTCTACTATAAC+AGG | + | tig0024683:48895-48914 | None:intergenic | 30.0% | |
| ATTGAAGTAAAAGGACCATT+AGG | + | tig0024683:48979-48998 | None:intergenic | 30.0% | |
| GCGCAAAATATTGAAGTAAA+AGG | + | tig0024683:48988-49007 | None:intergenic | 30.0% | |
| CAAAATTGAATAGGAAAGTG+AGG | + | tig0024683:49107-49126 | None:intergenic | 30.0% | |
| TCAACCCTACAAAATTGAAT+AGG | + | tig0024683:49116-49135 | None:intergenic | 30.0% | |
| ! | TTGTCTTTTGTGTGTAAGTA+TGG | + | tig0024683:49387-49406 | None:intergenic | 30.0% |
| CAATGATCCCATATTAATCA+AGG | - | tig0024683:49404-49423 | Msa1419230:intron | 30.0% | |
| AAAACCTCAATTCCTGTATA+GGG | + | tig0024683:49496-49515 | None:intergenic | 30.0% | |
| TAAAACCTCAATTCCTGTAT+AGG | + | tig0024683:49497-49516 | None:intergenic | 30.0% | |
| ACATTATGATGAATGGATCA+TGG | - | tig0024683:49643-49662 | Msa1419230:CDS | 30.0% | |
| !!! | TTTTTGTCTAGCTTTCTTGT+AGG | - | tig0024683:49725-49744 | Msa1419230:CDS | 30.0% |
| GAATCAGATATATGGATATG+AGG | + | tig0024683:49888-49907 | None:intergenic | 30.0% | |
| TGACTAGTGAATCAGATATA+TGG | + | tig0024683:49896-49915 | None:intergenic | 30.0% | |
| TATATCTGATTCACTAGTCA+TGG | - | tig0024683:49896-49915 | Msa1419230:intron | 30.0% | |
| !! | TAATACTTTTTGCATAGCGA+TGG | + | tig0024683:50077-50096 | None:intergenic | 30.0% |
| !! | TCGCTATGCAAAAAGTATTA+TGG | - | tig0024683:50077-50096 | Msa1419230:intron | 30.0% |
| TACACTAGATTAGCAGAATT+TGG | - | tig0024683:50161-50180 | Msa1419230:intron | 30.0% | |
| TTTCTCTGATGATTATTTGC+AGG | - | tig0024683:50217-50236 | Msa1419230:intron | 30.0% | |
| AAGATACTCCATATAAGTAG+AGG | + | tig0024683:50303-50322 | None:intergenic | 30.0% | |
| GATAACATTTGATGAAGTAC+AGG | + | tig0024683:50420-50439 | None:intergenic | 30.0% | |
| !! | CAGTAAAACTAGCTTTATTG+TGG | + | tig0024683:50530-50549 | None:intergenic | 30.0% |
| !!! | GACTTCACTATTTTAAGGTA+AGG | - | tig0024683:50753-50772 | Msa1419230:intron | 30.0% |
| ! | TGCATTGTTCATCATCTTTT+TGG | - | tig0024683:51014-51033 | Msa1419230:intron | 30.0% |
| !! | GATCATCTCCAATTTGTTTT+AGG | - | tig0024683:51230-51249 | Msa1419230:intron | 30.0% |
| !!! | TTTGTTTTAGGAACAGAATC+TGG | - | tig0024683:51242-51261 | Msa1419230:intron | 30.0% |
| !!! | TTGTTTTAGGAACAGAATCT+GGG | - | tig0024683:51243-51262 | Msa1419230:intron | 30.0% |
| ACTTCAACTGAATTTAGACT+CGG | + | tig0024683:51395-51414 | None:intergenic | 30.0% | |
| AGTCTAAATTCAGTTGAAGT+CGG | - | tig0024683:51395-51414 | Msa1419230:intron | 30.0% | |
| ATAATCAACTTAGGTCTGTT+TGG | - | tig0024683:51547-51566 | Msa1419230:intron | 30.0% | |
| ATTGGTGTGATAAACTATTC+TGG | - | tig0024683:52195-52214 | Msa1419230:CDS | 30.0% | |
| ! | GATAAACTATTCTGGTTGAT+CGG | - | tig0024683:52203-52222 | Msa1419230:CDS | 30.0% |
| ! | ATGGTAGTTTTTCTTAGTGT+AGG | - | tig0024683:52373-52392 | Msa1419230:five_prime_UTR | 30.0% |
| ! | TGAATGAAATAGCAGCATTT+TGG | - | tig0024683:52459-52478 | Msa1419230:five_prime_UTR | 30.0% |
| ! | GAATGAAATAGCAGCATTTT+GGG | - | tig0024683:52460-52479 | Msa1419230:five_prime_UTR | 30.0% |
| !! | AAAAAAAGGTACCCTTTGTG+AGG | - | tig0024683:47075-47094 | Msa1419230:three_prime_UTR | 35.0% |
| GAGAAAACTTACCTCACAAA+GGG | + | tig0024683:47089-47108 | None:intergenic | 35.0% | |
| TGAGAAAACTTACCTCACAA+AGG | + | tig0024683:47090-47109 | None:intergenic | 35.0% | |
| AATCAATGTTAGGCCCAAAA+GGG | + | tig0024683:47126-47145 | None:intergenic | 35.0% | |
| ! | AAAGGCATGGAATCAATGTT+AGG | + | tig0024683:47136-47155 | None:intergenic | 35.0% |
| ATAATAAGTGTAAGAGTGGG+AGG | + | tig0024683:47196-47215 | None:intergenic | 35.0% | |
| ! | GGTGCAAAAATGAGTTGAAA+TGG | + | tig0024683:47301-47320 | None:intergenic | 35.0% |
| !! | TTCAACTCATTTTTGCACCA+TGG | - | tig0024683:47302-47321 | Msa1419230:three_prime_UTR | 35.0% |
| ! | GGTTGAAGAATGAAACGTTT+TGG | + | tig0024683:47387-47406 | None:intergenic | 35.0% |
| !! | TTTTTGTGCGTGTTTGGTTT+GGG | - | tig0024683:47728-47747 | Msa1419230:intron | 35.0% |
| ! | GATTTGGTAGGTCTTAATGT+TGG | - | tig0024683:47798-47817 | Msa1419230:intron | 35.0% |
| GTAACAATCAAAGACGGAAA+AGG | + | tig0024683:47936-47955 | None:intergenic | 35.0% | |
| CCATAATATGTATCCGACAT+CGG | - | tig0024683:48150-48169 | Msa1419230:CDS | 35.0% | |
| ! | TTTTGCCAATAGAGACTCTA+AGG | + | tig0024683:48285-48304 | None:intergenic | 35.0% |
| TCAACAAAACTGCAAACTCT+AGG | - | tig0024683:48337-48356 | Msa1419230:CDS | 35.0% | |
| !! | AAACTGCAAACTCTAGGATT+CGG | - | tig0024683:48343-48362 | Msa1419230:CDS | 35.0% |
| ATTCTTTAGCCTATGCTATG+AGG | - | tig0024683:48651-48670 | Msa1419230:intron | 35.0% | |
| AACAAATGTCCTCATAGCAT+AGG | + | tig0024683:48663-48682 | None:intergenic | 35.0% | |
| !!! | CCACTACTATTTCCCTTTTT+TGG | + | tig0024683:48749-48768 | None:intergenic | 35.0% |
| CCAAAAAAGGGAAATAGTAG+TGG | - | tig0024683:48746-48765 | Msa1419230:intron | 35.0% | |
| TATACTTGGCACATTCCTAA+TGG | - | tig0024683:48961-48980 | Msa1419230:CDS | 35.0% | |
| ! | TTCCACTATATCTAAAGCGA+AGG | - | tig0024683:49029-49048 | Msa1419230:intron | 35.0% |
| ! | ATCTAAAGCGAAGGCATATT+TGG | - | tig0024683:49038-49057 | Msa1419230:intron | 35.0% |
| !!! | TCACCAACTTTTAGCTCATT+GGG | + | tig0024683:49765-49784 | None:intergenic | 35.0% |
| !!! | TTCACCAACTTTTAGCTCAT+TGG | + | tig0024683:49766-49785 | None:intergenic | 35.0% |
| ATGCAAATTCATAACAGTGC+TGG | - | tig0024683:49950-49969 | Msa1419230:intron | 35.0% | |
| TGCAAATTCATAACAGTGCT+GGG | - | tig0024683:49951-49970 | Msa1419230:intron | 35.0% | |
| AAAGAAGTAGACTTAGAAGC+TGG | + | tig0024683:50329-50348 | None:intergenic | 35.0% | |
| GATGAAGTACAGGTTATTGT+TGG | + | tig0024683:50410-50429 | None:intergenic | 35.0% | |
| TGTTATCCAGACTATTCTAC+AGG | - | tig0024683:50433-50452 | Msa1419230:intron | 35.0% | |
| ! | CTTTTCTGTATTCCTCTTTG+TGG | - | tig0024683:50471-50490 | Msa1419230:intron | 35.0% |
| ! | CTGATTTGAGCATATGGTAT+GGG | - | tig0024683:50606-50625 | Msa1419230:intron | 35.0% |
| ! | ACCACGACTTCACTATTTTA+AGG | - | tig0024683:50748-50767 | Msa1419230:intron | 35.0% |
| ACCTTAAAATAGTGAAGTCG+TGG | + | tig0024683:50752-50771 | None:intergenic | 35.0% | |
| CAATCTGTGCTACATTTATG+TGG | - | tig0024683:50828-50847 | Msa1419230:intron | 35.0% | |
| !!! | ACCATTTTAGGATGCTAGTT+TGG | - | tig0024683:50864-50883 | Msa1419230:intron | 35.0% |
| ACCAAACTAGCATCCTAAAA+TGG | + | tig0024683:50868-50887 | None:intergenic | 35.0% | |
| GAATAGAATGGTCTTCATGT+AGG | + | tig0024683:50918-50937 | None:intergenic | 35.0% | |
| !! | TCTTTTTGGCAATGAAGTTG+TGG | - | tig0024683:51028-51047 | Msa1419230:intron | 35.0% |
| ! | AGAGATGTTTTCATTGGCAA+TGG | - | tig0024683:51109-51128 | Msa1419230:intron | 35.0% |
| AAAGTCCAAAATATTCGAGG+TGG | + | tig0024683:51168-51187 | None:intergenic | 35.0% | |
| TTCAACTGAATTTAGACTCG+GGG | + | tig0024683:51393-51412 | None:intergenic | 35.0% | |
| CTTCAACTGAATTTAGACTC+GGG | + | tig0024683:51394-51413 | None:intergenic | 35.0% | |
| ACAAAACCTACCTTCATGTA+TGG | + | tig0024683:51497-51516 | None:intergenic | 35.0% | |
| !! | TGAAGGTAGGTTTTGTCATT+CGG | - | tig0024683:51501-51520 | Msa1419230:intron | 35.0% |
| !!! | CTGTTTTTATATAAGCTGCC+AGG | + | tig0024683:51675-51694 | None:intergenic | 35.0% |
| ATGCAAATTAAAGGTCCGTT+TGG | + | tig0024683:51794-51813 | None:intergenic | 35.0% | |
| GCTAAGAGAATTCATCTGAA+AGG | + | tig0024683:51882-51901 | None:intergenic | 35.0% | |
| ! | AGACAGCATATTTTCTTCGT+CGG | + | tig0024683:51933-51952 | None:intergenic | 35.0% |
| AAGTTCCTCATGTGCAAAAT+TGG | + | tig0024683:52025-52044 | None:intergenic | 35.0% | |
| !! | GAACTTTCAGGTTACTTTCT+TGG | - | tig0024683:52039-52058 | Msa1419230:CDS | 35.0% |
| CAATCTTCCACTGTCATATT+AGG | + | tig0024683:52179-52198 | None:intergenic | 35.0% | |
| CTAATATGACAGTGGAAGAT+TGG | - | tig0024683:52177-52196 | Msa1419230:CDS | 35.0% | |
| TCCAAGTTGCAAAAAACGAT+AGG | - | tig0024683:52321-52340 | Msa1419230:five_prime_UTR | 35.0% | |
| !!! | ACCTATCGTTTTTTGCAACT+TGG | + | tig0024683:52325-52344 | None:intergenic | 35.0% |
| ACGATAGGTAATAGTTACCA+CGG | - | tig0024683:52336-52355 | Msa1419230:five_prime_UTR | 35.0% | |
| ! | ATGATCATCACTTCCCCTTT+TGG | - | tig0024683:47109-47128 | Msa1419230:three_prime_UTR | 40.0% |
| ! | TGATCATCACTTCCCCTTTT+GGG | - | tig0024683:47110-47129 | Msa1419230:three_prime_UTR | 40.0% |
| ATCAATGTTAGGCCCAAAAG+GGG | + | tig0024683:47125-47144 | None:intergenic | 40.0% | |
| GAATCAATGTTAGGCCCAAA+AGG | + | tig0024683:47127-47146 | None:intergenic | 40.0% | |
| ! | GCACTTTTGCTAAAAAGGCA+TGG | + | tig0024683:47149-47168 | None:intergenic | 40.0% |
| GGAGCGAAAATAGAGAAAGA+AGG | + | tig0024683:47280-47299 | None:intergenic | 40.0% | |
| ! | GATTTGAATAGAGGCTGGTT+TGG | + | tig0024683:47408-47427 | None:intergenic | 40.0% |
| TGAGAGATTTGAATAGAGGC+TGG | + | tig0024683:47413-47432 | None:intergenic | 40.0% | |
| !! | GGTGGTTTTTGGAAAAGCTA+CGG | + | tig0024683:47463-47482 | None:intergenic | 40.0% |
| TTAATCTCACCTTCCCTTCA+CGG | + | tig0024683:47677-47696 | None:intergenic | 40.0% | |
| TGAAGGGAAGGTGAGATTAA+CGG | - | tig0024683:47677-47696 | Msa1419230:CDS | 40.0% | |
| ATTAACGGCGGATAGTGATT+CGG | - | tig0024683:47692-47711 | Msa1419230:intron | 40.0% | |
| ! | AGTGATTCGGAGATAACGAA+AGG | - | tig0024683:47705-47724 | Msa1419230:intron | 40.0% |
| ! | GAAAGGTTTTTGTGCGTGTT+TGG | - | tig0024683:47722-47741 | Msa1419230:intron | 40.0% |
| ! | GTTTTTGTGCGTGTTTGGTT+TGG | - | tig0024683:47727-47746 | Msa1419230:intron | 40.0% |
| !! | GAAAGTGAGTACTGAGGATT+TGG | - | tig0024683:47782-47801 | Msa1419230:intron | 40.0% |
| !! | GGTCTTAATGTTGGTTTACC+AGG | - | tig0024683:47807-47826 | Msa1419230:intron | 40.0% |
| !! | AATGTTGGTTTACCAGGAAC+TGG | - | tig0024683:47813-47832 | Msa1419230:intron | 40.0% |
| AATTGGTTGCTGAGAGAGAA+GGG | - | tig0024683:47895-47914 | Msa1419230:intron | 40.0% | |
| !! | TGATGATGGTGTTGTTCCTA+AGG | - | tig0024683:47956-47975 | Msa1419230:intron | 40.0% |
| !! | GATGATGGTGTTGTTCCTAA+GGG | - | tig0024683:47957-47976 | Msa1419230:intron | 40.0% |
| TGTTGTGTGTCGTGTTTCAT+AGG | + | tig0024683:48057-48076 | None:intergenic | 40.0% | |
| CCGATGTCGGATACATATTA+TGG | + | tig0024683:48153-48172 | None:intergenic | 40.0% | |
| TAAACCGAACCTAATCGACT+AGG | - | tig0024683:48244-48263 | Msa1419230:CDS | 40.0% | |
| TTCTCCTAGTCGATTAGGTT+CGG | + | tig0024683:48251-48270 | None:intergenic | 40.0% | |
| AAGGATTCTCCTAGTCGATT+AGG | + | tig0024683:48256-48275 | None:intergenic | 40.0% | |
| ! | ATCGACTAGGAGAATCCTTT+TGG | - | tig0024683:48257-48276 | Msa1419230:CDS | 40.0% |
| !! | AGAGACTCTAAGGTACCAAA+AGG | + | tig0024683:48275-48294 | None:intergenic | 40.0% |
| TGGTACCTTAGAGTCTCTAT+TGG | - | tig0024683:48277-48296 | Msa1419230:CDS | 40.0% | |
| !! | AACTCTAGGATTCGGAAGTT+TGG | - | tig0024683:48351-48370 | Msa1419230:CDS | 40.0% |
| GTAGTCTTCAGTCTTCACAA+TGG | + | tig0024683:48616-48635 | None:intergenic | 40.0% | |
| !!! | GGATATTAGTGGTGGGTTTT+TGG | - | tig0024683:48689-48708 | Msa1419230:intron | 40.0% |
| CTTGCAAGGTGTAACAGAAA+GGG | + | tig0024683:48775-48794 | None:intergenic | 40.0% | |
| TCTTGCAAGGTGTAACAGAA+AGG | + | tig0024683:48776-48795 | None:intergenic | 40.0% | |
| TGTGGATGCTTACTTTGTAG+AGG | - | tig0024683:48936-48955 | Msa1419230:CDS | 40.0% | |
| ! | ACTTTGTAGAGGCGTATACT+TGG | - | tig0024683:48947-48966 | Msa1419230:CDS | 40.0% |
| ! | TGCCTTCGCTTTAGATATAG+TGG | + | tig0024683:49034-49053 | None:intergenic | 40.0% |
| ! | TAAAGCGAAGGCATATTTGG+CGG | - | tig0024683:49041-49060 | Msa1419230:intron | 40.0% |
| GACCAAACTCAAACTTCGTA+AGG | - | tig0024683:49140-49159 | Msa1419230:CDS | 40.0% | |
| ! | CACCTTACGAAGTTTGAGTT+TGG | + | tig0024683:49145-49164 | None:intergenic | 40.0% |
| GTAACACTAACACCCTATAC+AGG | - | tig0024683:49481-49500 | Msa1419230:intron | 40.0% | |
| AACACCCTATACAGGAATTG+AGG | - | tig0024683:49489-49508 | Msa1419230:intron | 40.0% | |
| !!! | TGCCTCAGTTTTGTTGAATC+TGG | - | tig0024683:49679-49698 | Msa1419230:CDS | 40.0% |
| GTCCAGATTCAACAAAACTG+AGG | + | tig0024683:49684-49703 | None:intergenic | 40.0% | |
| TTCCCCAATGAGCTAAAAGT+TGG | - | tig0024683:49759-49778 | Msa1419230:CDS | 40.0% | |
| !!! | CACCAACTTTTAGCTCATTG+GGG | + | tig0024683:49764-49783 | None:intergenic | 40.0% |
| TGAACTAGTCAATGTGCTGA+AGG | - | tig0024683:49782-49801 | Msa1419230:CDS | 40.0% | |
| GTGCTGAAGGAGAAGAAAAT+TGG | - | tig0024683:49795-49814 | Msa1419230:CDS | 40.0% | |
| ! | CGTTGTTGCACACTTTTACA+TGG | - | tig0024683:49818-49837 | Msa1419230:intron | 40.0% |
| GTTAAAATGCCTTGGACTTC+AGG | + | tig0024683:49846-49865 | None:intergenic | 40.0% | |
| AAAACCAGCTTGATCAAGGA+TGG | + | tig0024683:50006-50025 | None:intergenic | 40.0% | |
| CGTTAAAACCAGCTTGATCA+AGG | + | tig0024683:50010-50029 | None:intergenic | 40.0% | |
| !!! | TGATCAAGCTGGTTTTAACG+AGG | - | tig0024683:50010-50029 | Msa1419230:intron | 40.0% |
| TTAGCATGTGTCTTCAAGAC+AGG | + | tig0024683:50112-50131 | None:intergenic | 40.0% | |
| GGTTGACGTGTATAGAATGT+CGG | - | tig0024683:50238-50257 | Msa1419230:intron | 40.0% | |
| AGAATGTCGGATGAGCATAT+TGG | - | tig0024683:50251-50270 | Msa1419230:intron | 40.0% | |
| TGAGCATATTGGATGTTCTC+TGG | - | tig0024683:50262-50281 | Msa1419230:intron | 40.0% | |
| TGCAGCTACCTCTACTTATA+TGG | - | tig0024683:50292-50311 | Msa1419230:intron | 40.0% | |
| ATCCAGACTATTCTACAGGT+TGG | - | tig0024683:50437-50456 | Msa1419230:intron | 40.0% | |
| AACCAACCTGTAGAATAGTC+TGG | + | tig0024683:50442-50461 | None:intergenic | 40.0% | |
| TGAGCAAATGCCTGCATAAA+AGG | + | tig0024683:50581-50600 | None:intergenic | 40.0% | |
| ! | AAGTGCCTGATTTGAGCATA+TGG | - | tig0024683:50600-50619 | Msa1419230:intron | 40.0% |
| CCATACCATATGCTCAAATC+AGG | + | tig0024683:50608-50627 | None:intergenic | 40.0% | |
| ! | CCTGATTTGAGCATATGGTA+TGG | - | tig0024683:50605-50624 | Msa1419230:intron | 40.0% |
| TATGGGCCTGATTCTTACAT+GGG | - | tig0024683:50623-50642 | Msa1419230:intron | 40.0% | |
| TGATCCATCCTGGCAAAAAA+AGG | + | tig0024683:50994-51013 | None:intergenic | 40.0% | |
| ! | ACCTGGAGAGATGTTTTCAT+TGG | - | tig0024683:51103-51122 | Msa1419230:intron | 40.0% |
| AGACAGGGTTCAAGAATCTT+TGG | - | tig0024683:51193-51212 | Msa1419230:intron | 40.0% | |
| ! | AACTTTTGCTCCTTGAGAAG+AGG | + | tig0024683:51321-51340 | None:intergenic | 40.0% |
| ! | GAAATTGACTCTGACGAAAC+TGG | + | tig0024683:51362-51381 | None:intergenic | 40.0% |
| TGCTTCTTGTCCATACATGA+AGG | - | tig0024683:51484-51503 | Msa1419230:intron | 40.0% | |
| TCTTGTCCATACATGAAGGT+AGG | - | tig0024683:51488-51507 | Msa1419230:intron | 40.0% | |
| !! | GTAGGTTTTGTCATTCGGTT+CGG | - | tig0024683:51506-51525 | Msa1419230:intron | 40.0% |
| ACATATTTCAGATGCACTCC+TGG | - | tig0024683:51654-51673 | Msa1419230:CDS | 40.0% | |
| ! | GACAGCATATTTTCTTCGTC+GGG | + | tig0024683:51932-51951 | None:intergenic | 40.0% |
| !! | TTCAAGTTGCAGACTCCAAA+TGG | - | tig0024683:51971-51990 | Msa1419230:CDS | 40.0% |
| ! | GTGAACCAATTTTGCACATG+AGG | - | tig0024683:52017-52036 | Msa1419230:CDS | 40.0% |
| TTTGCACATGAGGAACTTTC+AGG | - | tig0024683:52027-52046 | Msa1419230:CDS | 40.0% | |
| ! | TAACCTTTTGGTACTTGCAC+AGG | - | tig0024683:52108-52127 | Msa1419230:CDS | 40.0% |
| TAAAAAGCTTCCTGAGAAGC+TGG | - | tig0024683:52135-52154 | Msa1419230:CDS | 40.0% | |
| CTTCACACCTAATATGACAG+TGG | - | tig0024683:52169-52188 | Msa1419230:CDS | 40.0% | |
| TCTAAACAACCAGCTTCTCT+GGG | + | tig0024683:52238-52257 | None:intergenic | 40.0% | |
| ATCTAAACAACCAGCTTCTC+TGG | + | tig0024683:52239-52258 | None:intergenic | 40.0% | |
| GGTTATAGTAGTTGCAGCCA+TGG | + | tig0024683:47322-47341 | None:intergenic | 45.0% | |
| GATAGAGAGTGGAAACAGAG+AGG | + | tig0024683:47343-47362 | None:intergenic | 45.0% | |
| !! | TGGTTTGGGTTGATAGAGAG+TGG | + | tig0024683:47354-47373 | None:intergenic | 45.0% |
| ! | GGAGCAGGAAATGAAGGTTT+TGG | + | tig0024683:47439-47458 | None:intergenic | 45.0% |
| !! | GGTTTTTGGAAAAGCTACGG+TGG | + | tig0024683:47460-47479 | None:intergenic | 45.0% |
| !! | TGTTTGGTTTGGGTGCTTGA+TGG | - | tig0024683:47738-47757 | Msa1419230:intron | 45.0% |
| !! | GTTTGGTTTGGGTGCTTGAT+GGG | - | tig0024683:47739-47758 | Msa1419230:intron | 45.0% |
| CTCACTTTCACAACCTCTTC+CGG | + | tig0024683:47771-47790 | None:intergenic | 45.0% | |
| ! | GGTTGTGAAAGTGAGTACTG+AGG | - | tig0024683:47776-47795 | Msa1419230:intron | 45.0% |
| !! | GTGAGTACTGAGGATTTGGT+AGG | - | tig0024683:47786-47805 | Msa1419230:intron | 45.0% |
| CAATTGGTTGCTGAGAGAGA+AGG | - | tig0024683:47894-47913 | Msa1419230:intron | 45.0% | |
| GCTTCAGCATAACTACCCTT+AGG | + | tig0024683:47975-47994 | None:intergenic | 45.0% | |
| GATTAGGCATGTTCCGATGT+CGG | + | tig0024683:48166-48185 | None:intergenic | 45.0% | |
| TGCACTCAAGGGACAAATAC+AGG | - | tig0024683:48542-48561 | Msa1419230:CDS | 45.0% | |
| ! | AAAGCGAAGGCATATTTGGC+GGG | - | tig0024683:49042-49061 | Msa1419230:intron | 45.0% |
| GAAGTCGCATATTGCATGAG+TGG | - | tig0024683:49080-49099 | Msa1419230:intron | 45.0% | |
| TACATGGATCCTGAAGTCCA+AGG | - | tig0024683:49834-49853 | Msa1419230:intron | 45.0% | |
| GAGCAGCTGTTAAAATGCCT+TGG | + | tig0024683:49854-49873 | None:intergenic | 45.0% | |
| GGCAGATTCAGCAGTCAAAA+TGG | - | tig0024683:49917-49936 | Msa1419230:intron | 45.0% | |
| GCAGTCAAAATGGCAAAAGC+TGG | - | tig0024683:49927-49946 | Msa1419230:intron | 45.0% | |
| ! | ATTCATAACAGTGCTGGGTG+TGG | - | tig0024683:49956-49975 | Msa1419230:intron | 45.0% |
| CAACGAACACAACCACAAAG+AGG | + | tig0024683:50486-50505 | None:intergenic | 45.0% | |
| GTATGGGCCTGATTCTTACA+TGG | - | tig0024683:50622-50641 | Msa1419230:intron | 45.0% | |
| ATGGGCCTGATTCTTACATG+GGG | - | tig0024683:50624-50643 | Msa1419230:intron | 45.0% | |
| TTTGCCCCCATGTAAGAATC+AGG | + | tig0024683:50632-50651 | None:intergenic | 45.0% | |
| CGGTCATTACTGTCATCTGT+TGG | + | tig0024683:50670-50689 | None:intergenic | 45.0% | |
| GACAGTAATGACCGATGAAG+AGG | - | tig0024683:50676-50695 | Msa1419230:intron | 45.0% | |
| TATCGCAGCAACCTCTTCAT+CGG | + | tig0024683:50690-50709 | None:intergenic | 45.0% | |
| !!! | TGCTCTTGCCTTTTTTTGCC+AGG | - | tig0024683:50983-51002 | Msa1419230:intron | 45.0% |
| !!! | CTTGCCTTTTTTTGCCAGGA+TGG | - | tig0024683:50987-51006 | Msa1419230:intron | 45.0% |
| GAACAATGCATGATCCATCC+TGG | + | tig0024683:51004-51023 | None:intergenic | 45.0% | |
| ATTCCTTACTGCCCATCTTG+AGG | - | tig0024683:51079-51098 | Msa1419230:intron | 45.0% | |
| GCCAATGAAAACATCTCTCC+AGG | + | tig0024683:51107-51126 | None:intergenic | 45.0% | |
| TGGCAATGGAAGCAAAGAGA+AGG | - | tig0024683:51123-51142 | Msa1419230:intron | 45.0% | |
| GGCAATGGAAGCAAAGAGAA+GGG | - | tig0024683:51124-51143 | Msa1419230:intron | 45.0% | |
| GCAATGGAAGCAAAGAGAAG+GGG | - | tig0024683:51125-51144 | Msa1419230:intron | 45.0% | |
| CAATGGAAGCAAAGAGAAGG+GGG | - | tig0024683:51126-51145 | Msa1419230:intron | 45.0% | |
| ! | AGGCTCCACCTCGAATATTT+TGG | - | tig0024683:51160-51179 | Msa1419230:intron | 45.0% |
| GATTACTGCAATTGTCGCAG+CGG | - | tig0024683:51268-51287 | Msa1419230:intron | 45.0% | |
| ATCATGCTTCCTGTTGTACC+AGG | - | tig0024683:51422-51441 | Msa1419230:intron | 45.0% | |
| ! | GCATATTTTCTTCGTCGGGT+AGG | + | tig0024683:51928-51947 | None:intergenic | 45.0% |
| TAGCCTGTGCAAGTACCAAA+AGG | + | tig0024683:52114-52133 | None:intergenic | 45.0% | |
| ATCTGATCAACCAGCTTCTC+AGG | + | tig0024683:52148-52167 | None:intergenic | 45.0% | |
| ATTCTTCATCCCAGAGAAGC+TGG | - | tig0024683:52226-52245 | Msa1419230:CDS | 45.0% | |
| CATACAACAAAGTCTGACCG+TGG | + | tig0024683:52356-52375 | None:intergenic | 45.0% | |
| ! | CACGGTCAGACTTTGTTGTA+TGG | - | tig0024683:52354-52373 | Msa1419230:five_prime_UTR | 45.0% |
| !!! | ATTTATAAAAATATTTTTCA+TGG | - | tig0024683:49570-49589 | Msa1419230:CDS | 5.0% |
| TACGGTGGAGCAGGAAATGA+AGG | + | tig0024683:47445-47464 | None:intergenic | 50.0% | |
| TTTCAAAGGAGCGACAGGGT+TGG | + | tig0024683:47484-47503 | None:intergenic | 50.0% | |
| GGAGTTTCAAAGGAGCGACA+GGG | + | tig0024683:47488-47507 | None:intergenic | 50.0% | |
| AGGAGTTTCAAAGGAGCGAC+AGG | + | tig0024683:47489-47508 | None:intergenic | 50.0% | |
| AGACGACGGAGGAGTTTCAA+AGG | + | tig0024683:47498-47517 | None:intergenic | 50.0% | |
| AGTGTAGCAGCCGCTTCATT+CGG | + | tig0024683:47557-47576 | None:intergenic | 50.0% | |
| TGTTGACACGAACCGAGTCA+TGG | - | tig0024683:47614-47633 | Msa1419230:CDS | 50.0% | |
| GTTGACACGAACCGAGTCAT+GGG | - | tig0024683:47615-47634 | Msa1419230:CDS | 50.0% | |
| AGGTGAAGATCGACCGTGAA+GGG | - | tig0024683:47661-47680 | Msa1419230:CDS | 50.0% | |
| AGGGAAGGTGAGATTAACGG+CGG | - | tig0024683:47680-47699 | Msa1419230:intron | 50.0% | |
| TACCAGGAACTGGTCGTTCT+AGG | - | tig0024683:47823-47842 | Msa1419230:intron | 50.0% | |
| ACCAGGAACTGGTCGTTCTA+GGG | - | tig0024683:47824-47843 | Msa1419230:intron | 50.0% | |
| !! | GTCGTTCTAGGGTGAATACG+TGG | - | tig0024683:47835-47854 | Msa1419230:intron | 50.0% |
| CACATACATCAGGGAGAGTG+TGG | - | tig0024683:48485-48504 | Msa1419230:CDS | 50.0% | |
| ! | ATACATCAGGGAGAGTGTGG+AGG | - | tig0024683:48488-48507 | Msa1419230:CDS | 50.0% |
| !!! | AGTGGTGGGTTTTTGGTCAG+TGG | - | tig0024683:48696-48715 | Msa1419230:intron | 50.0% |
| ! | ACTGCTATCGATTACGCTCG+AGG | - | tig0024683:49190-49209 | Msa1419230:CDS | 50.0% |
| CACACTCCTCACAAATTGCG+CGG | + | tig0024683:49219-49238 | None:intergenic | 50.0% | |
| TAACAGCTGCTCAGAAGCAG+TGG | - | tig0024683:49862-49881 | Msa1419230:intron | 50.0% | |
| GGCTCTGCTTGGAAACTGAA+AGG | + | tig0024683:50056-50075 | None:intergenic | 50.0% | |
| TGGGCCTGATTCTTACATGG+GGG | - | tig0024683:50625-50644 | Msa1419230:intron | 50.0% | |
| ACAGAGTCTACATTGTGCGC+AGG | + | tig0024683:50716-50735 | None:intergenic | 50.0% | |
| GTACCTCAAGATGGGCAGTA+AGG | + | tig0024683:51085-51104 | None:intergenic | 50.0% | |
| CTCTCCAGGTACCTCAAGAT+GGG | + | tig0024683:51093-51112 | None:intergenic | 50.0% | |
| TCTCTCCAGGTACCTCAAGA+TGG | + | tig0024683:51094-51113 | None:intergenic | 50.0% | |
| GAAGCAAAGAGAAGGGGGAT+GGG | - | tig0024683:51131-51150 | Msa1419230:intron | 50.0% | |
| CCTTGAGAAGAGGACTTTGC+AGG | + | tig0024683:51311-51330 | None:intergenic | 50.0% | |
| CCTGCAAAGTCCTCTTCTCA+AGG | - | tig0024683:51308-51327 | Msa1419230:intron | 50.0% | |
| GTAGCTACTCCTGGTACAAC+AGG | + | tig0024683:51434-51453 | None:intergenic | 50.0% | |
| GTTGTACCAGGAGTAGCTAC+CGG | - | tig0024683:51434-51453 | Msa1419230:intron | 50.0% | |
| TTGTACCAGGAGTAGCTACC+GGG | - | tig0024683:51435-51454 | Msa1419230:intron | 50.0% | |
| ATGAATGGAACAACCCTCCC+CGG | + | tig0024683:51456-51475 | None:intergenic | 50.0% | |
| GAGGGTTGTTCCATTCATGG+TGG | - | tig0024683:51458-51477 | Msa1419230:intron | 50.0% | |
| ! | AGAAGCACAGCCACCATGAA+TGG | + | tig0024683:51471-51490 | None:intergenic | 50.0% |
| ! | GTAGGTGACGGCAAACTGTT+AGG | + | tig0024683:51910-51929 | None:intergenic | 50.0% |
| TTTCTTCGTCGGGTAGGTGA+CGG | + | tig0024683:51922-51941 | None:intergenic | 50.0% | |
| TTCACATCCTACGTCTGCCA+CGG | + | tig0024683:52002-52021 | None:intergenic | 50.0% | |
| TGGAAAAGCTACGGTGGAGC+AGG | + | tig0024683:47454-47473 | None:intergenic | 55.0% | |
| !!! | GCGACAGGGTTGGTGGTTTT+TGG | + | tig0024683:47474-47493 | None:intergenic | 55.0% |
| AGCCAGCAGACCGAATGAAG+CGG | - | tig0024683:47544-47563 | Msa1419230:CDS | 55.0% | |
| AGGGCTAACACCACCTATGG+AGG | - | tig0024683:47581-47600 | Msa1419230:CDS | 55.0% | |
| ACACGCGATGTCTCCTCCAT+AGG | + | tig0024683:47597-47616 | None:intergenic | 55.0% | |
| TCGCTGTACAGCCCATGACT+CGG | + | tig0024683:47629-47648 | None:intergenic | 55.0% | |
| TGGGCTGTACAGCGAGAGTA+TGG | - | tig0024683:47634-47653 | Msa1419230:CDS | 55.0% | |
| ! | GGGCTGTACAGCGAGAGTAT+GGG | - | tig0024683:47635-47654 | Msa1419230:CDS | 55.0% |
| ! | CTGTACAGCGAGAGTATGGG+TGG | - | tig0024683:47638-47657 | Msa1419230:CDS | 55.0% |
| ! | TACAGCGAGAGTATGGGTGG+AGG | - | tig0024683:47641-47660 | Msa1419230:CDS | 55.0% |
| GAGGTGAAGATCGACCGTGA+AGG | - | tig0024683:47660-47679 | Msa1419230:CDS | 55.0% | |
| GAAGATCGACCGTGAAGGGA+AGG | - | tig0024683:47665-47684 | Msa1419230:CDS | 55.0% | |
| ! | GGTTTGGGTGCTTGATGGGT+TGG | - | tig0024683:47743-47762 | Msa1419230:intron | 55.0% |
| !! | GGTGCTTGATGGGTTGGAAC+CGG | - | tig0024683:47749-47768 | Msa1419230:intron | 55.0% |
| !! | TGATGGGTTGGAACCGGAAG+AGG | - | tig0024683:47755-47774 | Msa1419230:intron | 55.0% |
| ACCCTAGAACGACCAGTTCC+TGG | + | tig0024683:47828-47847 | None:intergenic | 55.0% | |
| GGTTGCTGAGAGAGAAGGGA+AGG | - | tig0024683:47899-47918 | Msa1419230:intron | 55.0% | |
| GGGTAGTTATGCTGAAGCCC+AGG | - | tig0024683:47977-47996 | Msa1419230:intron | 55.0% | |
| AGGTGTCCGCGCAATTTGTG+AGG | - | tig0024683:49210-49229 | Msa1419230:CDS | 55.0% | |
| GCTGGGTGTGGACTTCATGT+CGG | - | tig0024683:49968-49987 | Msa1419230:intron | 55.0% | |
| ! | TGCATAGCGATGGCTCTGCT+TGG | + | tig0024683:50067-50086 | None:intergenic | 55.0% |
| ! | ACTGCCCATCTTGAGGTACC+TGG | - | tig0024683:51086-51105 | Msa1419230:intron | 55.0% |
| GGAAGCAAAGAGAAGGGGGA+TGG | - | tig0024683:51130-51149 | Msa1419230:intron | 55.0% | |
| AGAAGGGGGATGGGAGTAGT+AGG | - | tig0024683:51140-51159 | Msa1419230:intron | 55.0% | |
| TGTACCAGGAGTAGCTACCG+GGG | - | tig0024683:51436-51455 | Msa1419230:intron | 55.0% | |
| GGGGAGGGTTGTTCCATTCA+TGG | - | tig0024683:51455-51474 | Msa1419230:intron | 55.0% | |
| GACTCCAAATGGCCAATCCG+TGG | - | tig0024683:51982-52001 | Msa1419230:CDS | 55.0% | |
| !! | TCTGCCACGGATTGGCCATT+TGG | + | tig0024683:51989-52008 | None:intergenic | 55.0% |
| ATCCTACGTCTGCCACGGAT+TGG | + | tig0024683:51997-52016 | None:intergenic | 55.0% | |
| CAAAGGAGCGACAGGGTTGG+TGG | + | tig0024683:47481-47500 | None:intergenic | 60.0% | |
| GAAACTCCTCCGTCGTCTCG+CGG | - | tig0024683:47500-47519 | Msa1419230:intron | 60.0% | |
| GAAACTCCTCCGCGAGACGA+CGG | + | tig0024683:47512-47531 | None:intergenic | 60.0% | |
| AGCCGCTTCATTCGGTCTGC+TGG | + | tig0024683:47549-47568 | None:intergenic | 60.0% | |
| AAGCGGCTGCTACACTACGC+AGG | - | tig0024683:47561-47580 | Msa1419230:CDS | 60.0% | |
| AGCGGCTGCTACACTACGCA+GGG | - | tig0024683:47562-47581 | Msa1419230:CDS | 60.0% | |
| CGCAGGGCTAACACCACCTA+TGG | - | tig0024683:47578-47597 | Msa1419230:CDS | 60.0% | |
| CGCGATGTCTCCTCCATAGG+TGG | + | tig0024683:47594-47613 | None:intergenic | 60.0% | |
| CGCGCCATCCTTGATCAAGC+TGG | - | tig0024683:49999-50018 | Msa1419230:intron | 60.0% | |
| ACCAGGAGTAGCTACCGGGG+AGG | - | tig0024683:51439-51458 | Msa1419230:intron | 65.0% | |
| CCAGGAGTAGCTACCGGGGA+GGG | - | tig0024683:51440-51459 | Msa1419230:intron | 65.0% | |
| GGCCAATCCGTGGCAGACGT+AGG | - | tig0024683:51992-52011 | Msa1419230:CDS | 65.0% | |
| ACTCCTCCGTCGTCTCGCGG+AGG | - | tig0024683:47503-47522 | Msa1419230:intron | 70.0% | |
| ACTCCTCCGCGAGACGACGG+AGG | + | tig0024683:47509-47528 | None:intergenic | 70.0% | |
| CCCTCCCCGGTAGCTACTCC+TGG | + | tig0024683:51443-51462 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024683 | gene | 47062 | 52521 | 47062 | ID=Msa1419230;Name=Msa1419230 |
| tig0024683 | mRNA | 47062 | 52521 | 47062 | ID=Msa1419230-mRNA-1;Parent=Msa1419230;Name=Msa1419230-mRNA-1;_AED=0.07;_eAED=0.07;_QI=259|1|1|1|0.85|0.75|8|314|690 |
| tig0024683 | exon | 47062 | 47165 | 47062 | ID=Msa1419230-mRNA-1:exon:814;Parent=Msa1419230-mRNA-1 |
| tig0024683 | exon | 47193 | 47453 | 47193 | ID=Msa1419230-mRNA-1:exon:813;Parent=Msa1419230-mRNA-1 |
| tig0024683 | exon | 47535 | 47696 | 47535 | ID=Msa1419230-mRNA-1:exon:812;Parent=Msa1419230-mRNA-1 |
| tig0024683 | exon | 48078 | 48578 | 48078 | ID=Msa1419230-mRNA-1:exon:811;Parent=Msa1419230-mRNA-1 |
| tig0024683 | exon | 48814 | 48993 | 48814 | ID=Msa1419230-mRNA-1:exon:810;Parent=Msa1419230-mRNA-1 |
| tig0024683 | exon | 49129 | 49344 | 49129 | ID=Msa1419230-mRNA-1:exon:809;Parent=Msa1419230-mRNA-1 |
| tig0024683 | exon | 49552 | 49836 | 49552 | ID=Msa1419230-mRNA-1:exon:808;Parent=Msa1419230-mRNA-1 |
| tig0024683 | exon | 51585 | 52521 | 51585 | ID=Msa1419230-mRNA-1:exon:807;Parent=Msa1419230-mRNA-1 |
| tig0024683 | five_prime_UTR | 52263 | 52521 | 52263 | ID=Msa1419230-mRNA-1:five_prime_utr;Parent=Msa1419230-mRNA-1 |
| tig0024683 | CDS | 51585 | 52262 | 51585 | ID=Msa1419230-mRNA-1:cds;Parent=Msa1419230-mRNA-1 |
| tig0024683 | CDS | 49552 | 49836 | 49552 | ID=Msa1419230-mRNA-1:cds;Parent=Msa1419230-mRNA-1 |
| tig0024683 | CDS | 49129 | 49344 | 49129 | ID=Msa1419230-mRNA-1:cds;Parent=Msa1419230-mRNA-1 |
| tig0024683 | CDS | 48814 | 48993 | 48814 | ID=Msa1419230-mRNA-1:cds;Parent=Msa1419230-mRNA-1 |
| tig0024683 | CDS | 48078 | 48578 | 48078 | ID=Msa1419230-mRNA-1:cds;Parent=Msa1419230-mRNA-1 |
| tig0024683 | CDS | 47535 | 47696 | 47535 | ID=Msa1419230-mRNA-1:cds;Parent=Msa1419230-mRNA-1 |
| tig0024683 | CDS | 47403 | 47453 | 47403 | ID=Msa1419230-mRNA-1:cds;Parent=Msa1419230-mRNA-1 |
| tig0024683 | three_prime_UTR | 47193 | 47402 | 47193 | ID=Msa1419230-mRNA-1:three_prime_utr;Parent=Msa1419230-mRNA-1 |
| tig0024683 | three_prime_UTR | 47062 | 47165 | 47062 | ID=Msa1419230-mRNA-1:three_prime_utr;Parent=Msa1419230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
