Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871310 | XP_024641967.1 | 92.931 | 580 | 28 | 3 | 1 | 567 | 18 | 597 | 0.0 | 1089 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871310 | sp|Q8GUM4|Y3739_ARATH | 54.966 | 584 | 235 | 8 | 1 | 560 | 1 | 580 | 0.0 | 627 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871310 | A0A396HCZ0 | 92.931 | 580 | 28 | 3 | 1 | 567 | 18 | 597 | 0.0 | 1089 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021980 | Msa0871310 | 0.848282 | 6.768682e-60 | -8.615850e-47 |
| Msa0041780 | Msa0871310 | 0.800603 | 1.333760e-48 | -8.615850e-47 |
| Msa0049330 | Msa0871310 | 0.808859 | 2.518041e-50 | -8.615850e-47 |
| Msa0085580 | Msa0871310 | 0.814471 | 1.514852e-51 | -8.615850e-47 |
| Msa0117300 | Msa0871310 | 0.800504 | 1.397153e-48 | -8.615850e-47 |
| Msa0623360 | Msa0871310 | 0.806623 | 7.518549e-50 | -8.615850e-47 |
| Msa0639030 | Msa0871310 | 0.805152 | 1.532572e-49 | -8.615850e-47 |
| Msa0643020 | Msa0871310 | -0.810036 | 1.407317e-50 | -8.615850e-47 |
| Msa0664130 | Msa0871310 | 0.810106 | 1.359337e-50 | -8.615850e-47 |
| Msa0682730 | Msa0871310 | -0.815435 | 9.258725e-52 | -8.615850e-47 |
| Msa0697600 | Msa0871310 | 0.826588 | 2.497696e-54 | -8.615850e-47 |
| Msa0796460 | Msa0871310 | 0.843537 | 1.318495e-58 | -8.615850e-47 |
| Msa0834200 | Msa0871310 | 0.833197 | 6.123915e-56 | -8.615850e-47 |
| Msa0834240 | Msa0871310 | 0.852683 | 3.931159e-61 | -8.615850e-47 |
| Msa0835550 | Msa0871310 | 0.811208 | 7.852167e-51 | -8.615850e-47 |
| Msa0131090 | Msa0871310 | 0.800898 | 1.161240e-48 | -8.615850e-47 |
| Msa0160650 | Msa0871310 | 0.816503 | 5.348768e-52 | -8.615850e-47 |
| Msa0188500 | Msa0871310 | 0.839435 | 1.587793e-57 | -8.615850e-47 |
| Msa0200840 | Msa0871310 | 0.803597 | 3.231173e-49 | -8.615850e-47 |
| Msa0200870 | Msa0871310 | 0.824146 | 9.451974e-54 | -8.615850e-47 |
| Msa0216550 | Msa0871310 | 0.821125 | 4.766616e-53 | -8.615850e-47 |
| Msa0223190 | Msa0871310 | 0.817406 | 3.352315e-52 | -8.615850e-47 |
| Msa0225880 | Msa0871310 | 0.843402 | 1.432320e-58 | -8.615850e-47 |
| Msa0378670 | Msa0871310 | 0.800186 | 1.621870e-48 | -8.615850e-47 |
| Msa0378700 | Msa0871310 | 0.802652 | 5.068528e-49 | -8.615850e-47 |
| Msa0401570 | Msa0871310 | 0.823998 | 1.024145e-53 | -8.615850e-47 |
| Msa0454940 | Msa0871310 | 0.817443 | 3.288322e-52 | -8.615850e-47 |
| Msa0243470 | Msa0871310 | 0.812822 | 3.493622e-51 | -8.615850e-47 |
| Msa0256410 | Msa0871310 | 0.800798 | 1.216887e-48 | -8.615850e-47 |
| Msa0260470 | Msa0871310 | 0.842367 | 2.701105e-58 | -8.615850e-47 |
| Msa0264240 | Msa0871310 | 0.816432 | 5.546455e-52 | -8.615850e-47 |
| Msa0264420 | Msa0871310 | 0.830215 | 3.328824e-55 | -8.615850e-47 |
| Msa0295850 | Msa0871310 | 0.819899 | 9.113777e-53 | -8.615850e-47 |
| Msa0302310 | Msa0871310 | 0.819340 | 1.222888e-52 | -8.615850e-47 |
| Msa0304110 | Msa0871310 | 0.826712 | 2.333974e-54 | -8.615850e-47 |
| Msa0339560 | Msa0871310 | 0.823514 | 1.329471e-53 | -8.615850e-47 |
| Msa0339670 | Msa0871310 | 0.822948 | 1.802747e-53 | -8.615850e-47 |
| Msa0341190 | Msa0871310 | 0.827515 | 1.499210e-54 | -8.615850e-47 |
| Msa0364010 | Msa0871310 | 0.805159 | 1.527236e-49 | -8.615850e-47 |
| Msa0496460 | Msa0871310 | 0.812143 | 4.917974e-51 | -8.615850e-47 |
| Msa0502910 | Msa0871310 | 0.806489 | 8.024383e-50 | -8.615850e-47 |
| Msa0546370 | Msa0871310 | 0.804413 | 2.185929e-49 | -8.615850e-47 |
| Msa0560370 | Msa0871310 | 0.826037 | 3.380179e-54 | -8.615850e-47 |
| Msa0601920 | Msa0871310 | -0.815362 | 9.611831e-52 | -8.615850e-47 |
| Msa0861480 | Msa0871310 | 0.802203 | 6.272370e-49 | -8.615850e-47 |
| Msa0871310 | Msa0883670 | 0.803534 | 3.329054e-49 | -8.615850e-47 |
| Msa0871310 | Msa0894500 | 0.830973 | 2.171912e-55 | -8.615850e-47 |
| Msa0871310 | Msa0942300 | 0.908039 | 2.641376e-81 | -8.615850e-47 |
| Msa0871310 | Msa0959610 | 0.819321 | 1.235116e-52 | -8.615850e-47 |
| Msa0871310 | Msa0979270 | 0.849603 | 2.908982e-60 | -8.615850e-47 |
| Msa0871310 | Msa0995220 | 0.840581 | 7.976291e-58 | -8.615850e-47 |
| Msa0871310 | Msa0999590 | 0.845487 | 3.939133e-59 | -8.615850e-47 |
| Msa0871310 | Msa1012520 | -0.809590 | 1.755232e-50 | -8.615850e-47 |
| Msa0871310 | Msa1038110 | 0.864226 | 1.416053e-64 | -8.615850e-47 |
| Msa0871310 | Msa1044450 | 0.802339 | 5.878812e-49 | -8.615850e-47 |
| Msa0871310 | Msa1053990 | -0.824153 | 9.415339e-54 | -8.615850e-47 |
| Msa0871310 | Msa1071310 | 0.802881 | 4.545079e-49 | -8.615850e-47 |
| Msa0871310 | Msa1080790 | 0.840793 | 7.020537e-58 | -8.615850e-47 |
| Msa0871310 | Msa1118930 | 0.839416 | 1.605235e-57 | -8.615850e-47 |
| Msa0871310 | Msa1129660 | 0.831923 | 1.267389e-55 | -8.615850e-47 |
| Msa0871310 | Msa1141250 | -0.804791 | 1.822938e-49 | -8.615850e-47 |
| Msa0871310 | Msa1188820 | 0.809736 | 1.633226e-50 | -8.615850e-47 |
| Msa0871310 | Msa1194170 | -0.834534 | 2.835587e-56 | -8.615850e-47 |
| Msa0871310 | Msa1199580 | 0.812261 | 4.633882e-51 | -8.615850e-47 |
| Msa0871310 | Msa1208810 | 0.812040 | 5.178170e-51 | -8.615850e-47 |
| Msa0871310 | Msa1211390 | 0.811819 | 5.786179e-51 | -8.615850e-47 |
| Msa0871310 | Msa1240060 | -0.818053 | 2.396131e-52 | -8.615850e-47 |
| Msa0871310 | Msa1259010 | 0.831557 | 1.560773e-55 | -8.615850e-47 |
| Msa0871310 | Msa1263610 | 0.805451 | 1.326764e-49 | -8.615850e-47 |
| Msa0871310 | Msa1281370 | -0.802598 | 5.199094e-49 | -8.615850e-47 |
| Msa0871310 | Msa1320530 | -0.825523 | 4.474977e-54 | -8.615850e-47 |
| Msa0871310 | Msa1328630 | 0.805337 | 1.401650e-49 | -8.615850e-47 |
| Msa0871310 | Msa1328720 | 0.808678 | 2.751916e-50 | -8.615850e-47 |
| Msa0871310 | Msa1330660 | 0.805315 | 1.416640e-49 | -8.615850e-47 |
| Msa0871310 | Msa1353280 | 0.856575 | 2.933178e-62 | -8.615850e-47 |
| Msa0871310 | Msa1370630 | 0.874617 | 5.870894e-68 | -8.615850e-47 |
| Msa0871310 | Msa1401000 | 0.839205 | 1.821667e-57 | -8.615850e-47 |
| Msa0871310 | Msa1413900 | 0.807572 | 4.734805e-50 | -8.615850e-47 |
| Msa0871310 | Msa1419230 | 0.835409 | 1.706640e-56 | -8.615850e-47 |
| Msa0871310 | Msa1427180 | 0.822513 | 2.275659e-53 | -8.615850e-47 |
| Msa0871310 | Msa1459630 | 0.805404 | 1.356644e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871310 | MtrunA17_Chr6g0458321 | 92.931 | 580 | 28 | 3 | 1 | 567 | 18 | 597 | 0.0 | 1089 |
| Msa0871310 | MtrunA17_Chr7g0226361 | 61.847 | 574 | 202 | 6 | 1 | 558 | 1 | 573 | 0.0 | 710 |
| Msa0871310 | MtrunA17_Chr3g0120631 | 44.465 | 542 | 278 | 5 | 1 | 521 | 1 | 540 | 5.79e-150 | 442 |
| Msa0871310 | MtrunA17_Chr8g0374991 | 39.526 | 549 | 301 | 11 | 15 | 536 | 16 | 560 | 1.16e-130 | 394 |
| Msa0871310 | MtrunA17_Chr3g0120571 | 51.125 | 311 | 151 | 1 | 1 | 311 | 1 | 310 | 5.92e-104 | 316 |
| Msa0871310 | MtrunA17_Chr3g0120581 | 41.566 | 166 | 93 | 1 | 357 | 518 | 18 | 183 | 8.31e-31 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871310 | AT5G40640.1 | 56.477 | 579 | 226 | 8 | 1 | 557 | 1 | 575 | 0.0 | 641 |
| Msa0871310 | AT3G27390.2 | 54.966 | 584 | 235 | 8 | 1 | 560 | 1 | 580 | 0.0 | 627 |
| Msa0871310 | AT3G27390.1 | 54.966 | 584 | 235 | 8 | 1 | 560 | 1 | 580 | 0.0 | 627 |
| Msa0871310 | AT4G12680.1 | 45.640 | 539 | 269 | 9 | 1 | 518 | 1 | 536 | 2.14e-137 | 411 |
| Msa0871310 | AT4G37030.1 | 37.383 | 535 | 305 | 9 | 21 | 527 | 21 | 553 | 8.41e-127 | 384 |
Find 124 sgRNAs with CRISPR-Local
Find 398 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCATGATTAAGCATATTA+AGG | 0.213855 | 6_1:+6188778 | None:intergenic |
| ATGATATTTGGTCTTCAATA+TGG | 0.236907 | 6_1:-6191763 | Msa0871310:CDS |
| CAGGAGTCCTCTTTCTTGTT+TGG | 0.241603 | 6_1:-6187454 | Msa0871310:CDS |
| CAGGCCTTGCTATCCTTCTA+TGG | 0.261167 | 6_1:-6187671 | Msa0871310:CDS |
| GAGTTCAAGTTAAATCATTC+AGG | 0.270749 | 6_1:-6184404 | Msa0871310:three_prime_UTR |
| GGCTGGAGTTGTTGCCTATC+AGG | 0.273543 | 6_1:-6187586 | Msa0871310:intron |
| TGATGTTGCCTAGAATAAAA+AGG | 0.288251 | 6_1:+6191708 | None:intergenic |
| GCATATTAAGGGACAGAAAA+TGG | 0.293022 | 6_1:+6188790 | None:intergenic |
| TAATGATCAAAAGTGGATTA+AGG | 0.298395 | 6_1:+6186481 | None:intergenic |
| CAGCTATCATACTTGGTCTT+TGG | 0.306187 | 6_1:-6188745 | Msa0871310:CDS |
| GCTAGTTTGCGGTCGGATTC+CGG | 0.312554 | 6_1:+6186345 | None:intergenic |
| GGAATTGTTGGAAGTATTGT+AGG | 0.332832 | 6_1:-6188518 | Msa0871310:CDS |
| CCGGAGAATATTACGAAATC+AGG | 0.336687 | 6_1:-6187967 | Msa0871310:intron |
| AGTCATTAGTATTGGTTTGC+CGG | 0.342709 | 6_1:-6186762 | Msa0871310:CDS |
| TGGAACCTCCTCATGATATT+TGG | 0.345144 | 6_1:-6191775 | Msa0871310:CDS |
| CCATACTTATTTCTCTGTAA+TGG | 0.352662 | 6_1:-6188017 | Msa0871310:CDS |
| TGGTCGCGAAGGCCCTTTCT+TGG | 0.363819 | 6_1:-6187715 | Msa0871310:CDS |
| TGCAGGCTACATTATATTCC+TGG | 0.367253 | 6_1:-6187858 | Msa0871310:intron |
| CTATGGCCATTGGCTGTTGT+TGG | 0.373411 | 6_1:-6187654 | Msa0871310:CDS |
| CGTTTGTTTCGTGACCTCAT+TGG | 0.381664 | 6_1:-6187735 | Msa0871310:CDS |
| CCTCTTTCTTGTTTGGCCTT+CGG | 0.384001 | 6_1:-6187447 | Msa0871310:CDS |
| CATCCTTTGAAAAGCATGTA+TGG | 0.384520 | 6_1:+6187762 | None:intergenic |
| ATATGCTTAATCATGACAAT+TGG | 0.385784 | 6_1:-6188773 | Msa0871310:CDS |
| GTCATGATTAAGCATATTAA+GGG | 0.391448 | 6_1:+6188779 | None:intergenic |
| TCTTCAATGGTGATCTAGAT+AGG | 0.395079 | 6_1:-6186395 | Msa0871310:CDS |
| CTCTATTAAAGCCGATTCCT+CGG | 0.399831 | 6_1:-6186711 | Msa0871310:CDS |
| TGCTATCCTTCTATGGCCAT+TGG | 0.402911 | 6_1:-6187664 | Msa0871310:CDS |
| CAAGTATCTTTCTCGGTGCT+CGG | 0.404844 | 6_1:-6187608 | Msa0871310:CDS |
| ATCTTTCTCGGTGCTCGGGC+TGG | 0.405302 | 6_1:-6187603 | Msa0871310:CDS |
| ATTGTAGGTGGTGCAGCTTA+TGG | 0.409722 | 6_1:-6188503 | Msa0871310:CDS |
| TTATTTCTGTGAAGGCTTCA+AGG | 0.409868 | 6_1:-6186114 | Msa0871310:intron |
| TACTTCATCAGTGGTGCATC+AGG | 0.411868 | 6_1:-6184374 | Msa0871310:three_prime_UTR |
| GACTACAGATGTAAACAATT+AGG | 0.416259 | 6_1:-6188608 | Msa0871310:intron |
| AAGGCAACTAATGATATAAT+CGG | 0.423242 | 6_1:+6187795 | None:intergenic |
| CCATTACAGAGAAATAAGTA+TGG | 0.425303 | 6_1:+6188017 | None:intergenic |
| AACTTGACGCATTGGCTAGA+AGG | 0.428003 | 6_1:-6186320 | Msa0871310:intron |
| GCTGTTGTAGCAGCAATTCT+CGG | 0.428501 | 6_1:-6187834 | Msa0871310:CDS |
| GAGAGTAAAGTCATTAGTAT+TGG | 0.428912 | 6_1:-6186770 | Msa0871310:CDS |
| GTAATAGCAAGTATCTTTCT+CGG | 0.431510 | 6_1:-6187615 | Msa0871310:CDS |
| GACATACAAGAAGCCATGTT+TGG | 0.437610 | 6_1:-6186797 | Msa0871310:CDS |
| CAACAGCCAATGGCCATAGA+AGG | 0.446607 | 6_1:+6187658 | None:intergenic |
| TTGCGGTCGGATTCCGGAGG+AGG | 0.451246 | 6_1:+6186351 | None:intergenic |
| TGCAAGTTAGTCCTCTTCAA+TGG | 0.456367 | 6_1:-6186408 | Msa0871310:CDS |
| ACACATATTGTCTCCAAGAA+AGG | 0.461105 | 6_1:+6187702 | None:intergenic |
| TATCAATATACCCGAGGAAT+CGG | 0.463010 | 6_1:+6186700 | None:intergenic |
| TGTTGTCTTTGTAGACATCT+TGG | 0.465858 | 6_1:-6191809 | Msa0871310:five_prime_UTR |
| TTGGTGGTCCGTCTTGTCTC+AGG | 0.469442 | 6_1:+6187990 | None:intergenic |
| TCTATTAAAGCCGATTCCTC+GGG | 0.475474 | 6_1:-6186710 | Msa0871310:intron |
| AAGTATCTTTCTCGGTGCTC+GGG | 0.475706 | 6_1:-6187607 | Msa0871310:CDS |
| AGACAAGACGGACCACCAAC+CGG | 0.475822 | 6_1:-6187986 | Msa0871310:CDS |
| TCTAGCCAATGCGTCAAGTT+CGG | 0.477905 | 6_1:+6186323 | None:intergenic |
| CGTCAAGTTCGGCTAGTTTG+CGG | 0.480808 | 6_1:+6186334 | None:intergenic |
| TGATCTTTAATGATCAAAAG+TGG | 0.480904 | 6_1:+6186474 | None:intergenic |
| CATGTATGGAACTTTACATA+AGG | 0.481598 | 6_1:+6187776 | None:intergenic |
| CCTGATTTCGTAATATTCTC+CGG | 0.491674 | 6_1:+6187967 | None:intergenic |
| TATTCGTTAGAGAAATTGTA+CGG | 0.491810 | 6_1:+6187166 | None:intergenic |
| CGGAAGGATCTTGCTTTCCA+AGG | 0.495581 | 6_1:-6187366 | Msa0871310:intron |
| AGCTGAGTTGAAACCATTTG+AGG | 0.501739 | 6_1:-6187139 | Msa0871310:intron |
| TTTCTATGCCATTCACAGGT+AGG | 0.501983 | 6_1:+6185803 | None:intergenic |
| TTTACTCTCTTTGCCAAACA+TGG | 0.503256 | 6_1:+6186784 | None:intergenic |
| TCCCTTTCTATGCCATTCAC+AGG | 0.506915 | 6_1:+6185799 | None:intergenic |
| TGTAGATTTCAAGTACAAGA+AGG | 0.511969 | 6_1:-6184510 | Msa0871310:intron |
| CTGTTGTAGCAGCAATTCTC+GGG | 0.512445 | 6_1:-6187833 | Msa0871310:CDS |
| TCTGATGAAGAATCTGAACT+TGG | 0.513957 | 6_1:-6185922 | Msa0871310:CDS |
| GCATCAGGACATTGTGAGAA+AGG | 0.515708 | 6_1:-6184359 | None:intergenic |
| ACCTGTGAATGGCATAGAAA+GGG | 0.517629 | 6_1:-6185800 | Msa0871310:three_prime_UTR |
| AAGGATTCAGTGATGGAAGT+TGG | 0.518692 | 6_1:-6184491 | Msa0871310:three_prime_UTR |
| CAAGGTTTCCGACATACAAA+AGG | 0.519331 | 6_1:-6186074 | Msa0871310:CDS |
| TACCTGTGAATGGCATAGAA+AGG | 0.523065 | 6_1:-6185801 | Msa0871310:three_prime_UTR |
| GGAAACTCAGCTATCATACT+TGG | 0.524746 | 6_1:-6188752 | Msa0871310:CDS |
| AGGATAGCAAGGCCTGCAAA+AGG | 0.529649 | 6_1:+6187678 | None:intergenic |
| ATGGCATAGAAAGGGATTGA+AGG | 0.530750 | 6_1:-6185792 | Msa0871310:intron |
| TCGTAATATTCTCCGGTTGG+TGG | 0.530909 | 6_1:+6187974 | None:intergenic |
| ATTTCGTAATATTCTCCGGT+TGG | 0.531719 | 6_1:+6187971 | None:intergenic |
| AGTTCAAGTTAAATCATTCA+GGG | 0.532515 | 6_1:-6184403 | Msa0871310:three_prime_UTR |
| AGTCTACACCTACCTGTGAA+TGG | 0.533975 | 6_1:-6185811 | Msa0871310:three_prime_UTR |
| CACATATTGTCTCCAAGAAA+GGG | 0.540976 | 6_1:+6187703 | None:intergenic |
| GCTTCAAAAGTAGCAAATAA+CGG | 0.544105 | 6_1:+6188470 | None:intergenic |
| GGAGAAACATTGGTTTCTCA+AGG | 0.546761 | 6_1:-6186836 | Msa0871310:CDS |
| CTTCAATGGTGATCTAGATA+GGG | 0.550587 | 6_1:-6186394 | Msa0871310:CDS |
| ACATCTTGGTGAGAGTGTAA+TGG | 0.550861 | 6_1:-6191795 | Msa0871310:exon |
| TAATGATATTCTTGATATGT+CGG | 0.552548 | 6_1:-6187386 | Msa0871310:CDS |
| TCTTCATGTAGGAGAAACAT+TGG | 0.555373 | 6_1:-6186846 | Msa0871310:CDS |
| CACATCACAAACTTTAGTAA+TGG | 0.556025 | 6_1:+6188584 | None:intergenic |
| CGGGAAATAGTCTTTGCTAA+GGG | 0.557759 | 6_1:+6187186 | None:intergenic |
| AAATCTTTCCGTGTCTGAAG+AGG | 0.559024 | 6_1:-6186439 | Msa0871310:CDS |
| TTCAGTGATGGAAGTTGGCA+AGG | 0.562087 | 6_1:-6184486 | Msa0871310:three_prime_UTR |
| ACTAGCCGAACTTGACGCAT+TGG | 0.565193 | 6_1:-6186328 | Msa0871310:CDS |
| AGCCATAAAATCAACAGCAC+TGG | 0.565744 | 6_1:+6188548 | None:intergenic |
| TTTATTCTAGGCAACATCAA+AGG | 0.573100 | 6_1:-6191704 | Msa0871310:intron |
| ACGGGAAATAGTCTTTGCTA+AGG | 0.574299 | 6_1:+6187185 | None:intergenic |
| ATTCGTTAGAGAAATTGTAC+GGG | 0.577112 | 6_1:+6187167 | None:intergenic |
| AAATCATTCAACAAGAGTAA+TGG | 0.577142 | 6_1:-6185946 | Msa0871310:CDS |
| TTTGGTGCATACATACTACA+TGG | 0.579461 | 6_1:-6188727 | Msa0871310:CDS |
| CGTGACCTCATTGGTCGCGA+AGG | 0.581435 | 6_1:-6187726 | Msa0871310:CDS |
| CCGAAGGCCAAACAAGAAAG+AGG | 0.583138 | 6_1:+6187447 | None:intergenic |
| GATATTCTTGATATGTCGGA+AGG | 0.585528 | 6_1:-6187382 | Msa0871310:CDS |
| GAAGACATTTGATATTGTGA+AGG | 0.589826 | 6_1:-6188059 | Msa0871310:CDS |
| TATCTAGATCACCATTGAAG+AGG | 0.592362 | 6_1:+6186397 | None:intergenic |
| GAGAAAAGATTGAAATATCA+CGG | 0.592386 | 6_1:-6187245 | Msa0871310:CDS |
| TAAGGGCTTAGTTCTTGAGA+AGG | 0.598574 | 6_1:+6187203 | None:intergenic |
| TGAAGAGGACTAACTTGCAA+AGG | 0.600847 | 6_1:+6186412 | None:intergenic |
| GTACAAGAAGGATTCAGTGA+TGG | 0.605927 | 6_1:-6184498 | Msa0871310:three_prime_UTR |
| AAGTTCGGCTAGTTTGCGGT+CGG | 0.606382 | 6_1:+6186338 | None:intergenic |
| GAAGAGCTTGCTGATAAACA+TGG | 0.607187 | 6_1:-6186021 | Msa0871310:CDS |
| AACGCGCCAACAACAGCCAA+TGG | 0.613619 | 6_1:+6187648 | None:intergenic |
| GGGACATTCTACTTCATCAG+TGG | 0.616697 | 6_1:-6184383 | Msa0871310:three_prime_UTR |
| GTATAACAAAATTTATCACA+AGG | 0.619052 | 6_1:-6186092 | Msa0871310:CDS |
| GCTTGAAGAAGACAATAAGC+CGG | 0.625908 | 6_1:+6186743 | None:intergenic |
| ATGGATGACCTGAGACAAGA+CGG | 0.626405 | 6_1:-6187998 | Msa0871310:CDS |
| ATTGCTGCTACAACAGCACC+AGG | 0.626899 | 6_1:+6187840 | None:intergenic |
| TGGATCCTTAGGATGGAACA+TGG | 0.632406 | 6_1:-6188093 | Msa0871310:intron |
| TGCAAGGAATGTCTTCATGT+AGG | 0.633729 | 6_1:-6186857 | Msa0871310:intron |
| AACTACTTCAAACAGACCAA+AGG | 0.634491 | 6_1:-6186523 | Msa0871310:CDS |
| ATGGCCATAGAAGGATAGCA+AGG | 0.646850 | 6_1:+6187667 | None:intergenic |
| AAGGTAGTCCTCTTCAGACA+CGG | 0.649762 | 6_1:+6186431 | None:intergenic |
| ATTGAAGACCAAATATCATG+AGG | 0.650735 | 6_1:+6191767 | None:intergenic |
| AAGTTGCGACAATGTACCGA+AGG | 0.666224 | 6_1:+6187431 | None:intergenic |
| AGTTTGCGGTCGGATTCCGG+AGG | 0.670991 | 6_1:+6186348 | None:intergenic |
| GAAGACCAAATATCATGAGG+AGG | 0.672550 | 6_1:+6191770 | None:intergenic |
| ATTGTTGGAAGTATTGTAGG+TGG | 0.684186 | 6_1:-6188515 | Msa0871310:CDS |
| AAGGGCCTTCGCGACCAATG+AGG | 0.687378 | 6_1:+6187721 | None:intergenic |
| CAAAACATACCATAAAACAG+TGG | 0.698483 | 6_1:+6188417 | None:intergenic |
| GGACATATTACTGTGTTGTG+AGG | 0.740533 | 6_1:-6188706 | Msa0871310:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAAATTTTTTATACTTTT+TGG | - | chr6_1:6185065-6185084 | Msa0871310:intron | 10.0% |
| !!! | TATAATATTTTGAATTTTTC+TGG | + | chr6_1:6185990-6186009 | None:intergenic | 10.0% |
| !!! | AACAATAATATCTTATTTTA+GGG | + | chr6_1:6188749-6188768 | None:intergenic | 10.0% |
| !! | TGATTAATGTTTAAAAAAAA+TGG | - | chr6_1:6190601-6190620 | Msa0871310:intron | 10.0% |
| !! | TAAATGTAAAAAATGAAAAT+CGG | - | chr6_1:6190705-6190724 | Msa0871310:intron | 10.0% |
| !!! | ATAAATTGAAATTTTTCATA+TGG | + | chr6_1:6191054-6191073 | None:intergenic | 10.0% |
| !! | AGAATTAATCCAAAATAATA+TGG | + | chr6_1:6184648-6184667 | None:intergenic | 15.0% |
| !! | ATTAAACTGTTTATTCAAAT+AGG | + | chr6_1:6185212-6185231 | None:intergenic | 15.0% |
| !!! | GTAATATCATTCAAATTTTA+CGG | + | chr6_1:6185762-6185781 | None:intergenic | 15.0% |
| !!! | ATTTGAGATAAATATGTTTT+TGG | - | chr6_1:6185820-6185839 | Msa0871310:three_prime_UTR | 15.0% |
| !! | GAAAAATTGACATATTTATA+AGG | + | chr6_1:6185847-6185866 | None:intergenic | 15.0% |
| !!! | AATTGAAAGAAAATTTTAGA+GGG | + | chr6_1:6185878-6185897 | None:intergenic | 15.0% |
| !!! | AAATTGAAAGAAAATTTTAG+AGG | + | chr6_1:6185879-6185898 | None:intergenic | 15.0% |
| !!! | AAAAATTCTGAATTTTTTTC+TGG | + | chr6_1:6186022-6186041 | None:intergenic | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+GGG | - | chr6_1:6186220-6186239 | Msa0871310:intron | 15.0% |
| !! | ATCATTATGTAAAATTCTAA+GGG | + | chr6_1:6186322-6186341 | None:intergenic | 15.0% |
| !! | TATCATTATGTAAAATTCTA+AGG | + | chr6_1:6186323-6186342 | None:intergenic | 15.0% |
| !!! | ATATTCTTTTTGATAGAAAT+CGG | + | chr6_1:6186763-6186782 | None:intergenic | 15.0% |
| !!! | TAATATCTTTTTTCTTTCTT+AGG | + | chr6_1:6187046-6187065 | None:intergenic | 15.0% |
| !! | AAAAAAGATATTAGAATATG+AGG | - | chr6_1:6187053-6187072 | Msa0871310:intron | 15.0% |
| !!! | TAAGATTGTTTGTAAATTTT+TGG | + | chr6_1:6187141-6187160 | None:intergenic | 15.0% |
| !! | AGAGAATTTCAAATAATTTA+AGG | - | chr6_1:6187173-6187192 | Msa0871310:CDS | 15.0% |
| !!! | GAACAATAATATCTTATTTT+AGG | + | chr6_1:6188750-6188769 | None:intergenic | 15.0% |
| !!! | AAAATCATTTGCTTTTAAAA+TGG | - | chr6_1:6189710-6189729 | Msa0871310:intron | 15.0% |
| !!! | GTAAAATACTGAAATTTTAT+TGG | + | chr6_1:6190061-6190080 | None:intergenic | 15.0% |
| !!! | TTTATTTGACTTAGTTAATA+GGG | + | chr6_1:6191098-6191117 | None:intergenic | 15.0% |
| !!! | ATTTATTTGACTTAGTTAAT+AGG | + | chr6_1:6191099-6191118 | None:intergenic | 15.0% |
| !!! | TTTTCATCAATATAATTTCA+AGG | - | chr6_1:6191578-6191597 | Msa0871310:intron | 15.0% |
| !! | TTTATACAATAAAAATGACA+CGG | - | chr6_1:6191636-6191655 | Msa0871310:intron | 15.0% |
| !! | TCTAAAAGTTCCAAAAAAAA+AGG | - | chr6_1:6184373-6184392 | Msa0871310:three_prime_UTR | 20.0% |
| !! | CTAAAAGTTCCAAAAAAAAA+GGG | - | chr6_1:6184374-6184393 | Msa0871310:three_prime_UTR | 20.0% |
| !! | AAAAAAAAAGGGAAGAAAAT+GGG | - | chr6_1:6184385-6184404 | Msa0871310:three_prime_UTR | 20.0% |
| !!! | TCAATTCTTCCATATTATTT+TGG | - | chr6_1:6184636-6184655 | Msa0871310:intron | 20.0% |
| !! | TTTATATCTTCATTTAGCAA+AGG | - | chr6_1:6184710-6184729 | Msa0871310:intron | 20.0% |
| !! | TTATGAGAAAATCTCTATTT+GGG | - | chr6_1:6185350-6185369 | Msa0871310:intron | 20.0% |
| !! | ACATTGAGATTTCATTTATA+TGG | - | chr6_1:6185479-6185498 | Msa0871310:intron | 20.0% |
| !! | CATTGAGATTTCATTTATAT+GGG | - | chr6_1:6185480-6185499 | Msa0871310:intron | 20.0% |
| !! | ATTGAGATTTCATTTATATG+GGG | - | chr6_1:6185481-6185500 | Msa0871310:intron | 20.0% |
| !!! | AAATTTTCAATCTTCACTTT+TGG | - | chr6_1:6185910-6185929 | Msa0871310:CDS | 20.0% |
| !! | TATGAGTTTACTTTATAAGA+GGG | + | chr6_1:6185937-6185956 | None:intergenic | 20.0% |
| !! | ATATGAGTTTACTTTATAAG+AGG | + | chr6_1:6185938-6185957 | None:intergenic | 20.0% |
| !!! | AAATTTTCAATCACTACTTT+TGG | + | chr6_1:6186216-6186235 | None:intergenic | 20.0% |
| !!! | GTAGTGATTGAAAATTTTAT+AGG | - | chr6_1:6186219-6186238 | Msa0871310:intron | 20.0% |
| !! | GAAAAGTTGACATATTTATA+GGG | - | chr6_1:6186280-6186299 | Msa0871310:intron | 20.0% |
| !!! | ATCTTTTCAATCGATTTTAT+TGG | - | chr6_1:6186605-6186624 | Msa0871310:intron | 20.0% |
| !!! | TCTTTTCAATCGATTTTATT+GGG | - | chr6_1:6186606-6186625 | Msa0871310:intron | 20.0% |
| !!! | ACTTGACTCTTTTAATTATT+TGG | - | chr6_1:6186718-6186737 | Msa0871310:CDS | 20.0% |
| !! | AGAAGTAGTCAATATTTAAA+TGG | - | chr6_1:6186810-6186829 | Msa0871310:CDS | 20.0% |
| !!! | GTAAATTTTTGGTAAAAGAA+TGG | + | chr6_1:6187130-6187149 | None:intergenic | 20.0% |
| !!! | TATTCTATTACGCAATATTT+TGG | + | chr6_1:6187332-6187351 | None:intergenic | 20.0% |
| !! | ATTACGTAATGAATATAACA+AGG | + | chr6_1:6188100-6188119 | None:intergenic | 20.0% |
| !! | TAAAATTTCACAGAAAATCA+AGG | + | chr6_1:6188402-6188421 | None:intergenic | 20.0% |
| !! | TAATGATATTCTTGATATGT+CGG | - | chr6_1:6188919-6188938 | Msa0871310:intron | 20.0% |
| !!! | TTAAGTTGTTTATCCAAATA+GGG | + | chr6_1:6189671-6189690 | None:intergenic | 20.0% |
| !!! | ATTAAGTTGTTTATCCAAAT+AGG | + | chr6_1:6189672-6189691 | None:intergenic | 20.0% |
| !!! | AGGGTAAAAAATTTAACTTT+TGG | - | chr6_1:6189930-6189949 | Msa0871310:intron | 20.0% |
| !! | GTATAACAAAATTTATCACA+AGG | - | chr6_1:6190213-6190232 | Msa0871310:intron | 20.0% |
| !! | TTTCATATGGAAAATTTAGA+GGG | + | chr6_1:6191041-6191060 | None:intergenic | 20.0% |
| !!! | TTTTCATATGGAAAATTTAG+AGG | + | chr6_1:6191042-6191061 | None:intergenic | 20.0% |
| !! | TATTGATGAAAATAAAGAGA+GGG | + | chr6_1:6191570-6191589 | None:intergenic | 20.0% |
| !! | ATATTGATGAAAATAAAGAG+AGG | + | chr6_1:6191571-6191590 | None:intergenic | 20.0% |
| !!! | TTTTGGAACTTTTAGAATTG+AGG | + | chr6_1:6184369-6184388 | None:intergenic | 25.0% |
| !! | CATTTTCTTCCCTTTTTTTT+TGG | + | chr6_1:6184386-6184405 | None:intergenic | 25.0% |
| ! | CAAAAAAAAAGGGAAGAAAA+TGG | - | chr6_1:6184384-6184403 | Msa0871310:three_prime_UTR | 25.0% |
| ! | AGATGTAGAAAAAGAAGAAA+AGG | + | chr6_1:6184424-6184443 | None:intergenic | 25.0% |
| !! | TTCTTCTTTTTCTACATCTA+TGG | - | chr6_1:6184425-6184444 | Msa0871310:three_prime_UTR | 25.0% |
| !! | ATGATATTTGGTCTTCAATA+TGG | - | chr6_1:6184542-6184561 | Msa0871310:intron | 25.0% |
| !! | CAACATCAAAGGTAAATTTT+AGG | - | chr6_1:6184612-6184631 | Msa0871310:intron | 25.0% |
| ! | CTTATGAGAAAATCTCTATT+TGG | - | chr6_1:6185349-6185368 | Msa0871310:intron | 25.0% |
| ! | AATGAAATCTCAATGTACAT+TGG | + | chr6_1:6185475-6185494 | None:intergenic | 25.0% |
| ! | TTGAGATTTCATTTATATGG+GGG | - | chr6_1:6185482-6185501 | Msa0871310:intron | 25.0% |
| !! | ATTTTATAGGGACTAAATGT+TGG | - | chr6_1:6186232-6186251 | Msa0871310:intron | 25.0% |
| ! | CGAAAAGTTGACATATTTAT+AGG | - | chr6_1:6186279-6186298 | Msa0871310:intron | 25.0% |
| !! | TCTAAGGGTTAAATATGTTT+TGG | + | chr6_1:6186307-6186326 | None:intergenic | 25.0% |
| !! | TTCTTGTTTACAACAAGTTT+AGG | + | chr6_1:6186560-6186579 | None:intergenic | 25.0% |
| !! | AACACTCATATCTTTTTCTT+TGG | + | chr6_1:6186882-6186901 | None:intergenic | 25.0% |
| ! | TAGTGTAACACATATAGTTA+TGG | - | chr6_1:6186903-6186922 | Msa0871310:intron | 25.0% |
| ! | TTGGATTTGAAAAAGGAATA+AGG | + | chr6_1:6186954-6186973 | None:intergenic | 25.0% |
| !! | CATCTTTTTGGATTTGAAAA+AGG | + | chr6_1:6186961-6186980 | None:intergenic | 25.0% |
| ! | AATGTAGAAAAACAACGAAA+GGG | + | chr6_1:6187204-6187223 | None:intergenic | 25.0% |
| ! | AAATGTAGAAAAACAACGAA+AGG | + | chr6_1:6187205-6187224 | None:intergenic | 25.0% |
| !!! | TCGTTGTTTTTCTACATTTA+TGG | - | chr6_1:6187206-6187225 | Msa0871310:CDS | 25.0% |
| ! | TTTCTACATTTATGGCTAAT+AGG | - | chr6_1:6187214-6187233 | Msa0871310:CDS | 25.0% |
| !! | TGCAAAATGAAGAATTGTTT+TGG | - | chr6_1:6187237-6187256 | Msa0871310:CDS | 25.0% |
| ! | GTCATGATTAAGCATATTAA+GGG | + | chr6_1:6187529-6187548 | None:intergenic | 25.0% |
| ! | TGTCATGATTAAGCATATTA+AGG | + | chr6_1:6187530-6187549 | None:intergenic | 25.0% |
| ! | ATATGCTTAATCATGACAAT+TGG | - | chr6_1:6187532-6187551 | Msa0871310:intron | 25.0% |
| !!! | TTGATTTTATGGCTAGTTTT+GGG | - | chr6_1:6187766-6187785 | Msa0871310:CDS | 25.0% |
| !! | CAAAATTTTCCACTGTTTTA+TGG | - | chr6_1:6187879-6187898 | Msa0871310:intron | 25.0% |
| !! | GATTTTAAACGTCATAAACT+AGG | + | chr6_1:6188036-6188055 | None:intergenic | 25.0% |
| ! | TTAACCACATATTTGAACTA+TGG | - | chr6_1:6188119-6188138 | Msa0871310:intron | 25.0% |
| !! | TTGATAACAAATTTCGACAA+CGG | + | chr6_1:6188157-6188176 | None:intergenic | 25.0% |
| ! | AAGGCAACTAATGATATAAT+CGG | + | chr6_1:6188513-6188532 | None:intergenic | 25.0% |
| ! | CAAAACAACATGTATTACAA+AGG | + | chr6_1:6188979-6188998 | None:intergenic | 25.0% |
| ! | AAATATCAAACACAAGTCAA+GGG | + | chr6_1:6189021-6189040 | None:intergenic | 25.0% |
| ! | ACTTGTGTTTGATATTTGAT+AGG | - | chr6_1:6189024-6189043 | Msa0871310:intron | 25.0% |
| ! | GAGAAAAGATTGAAATATCA+CGG | - | chr6_1:6189060-6189079 | Msa0871310:intron | 25.0% |
| ! | TATTCGTTAGAGAAATTGTA+CGG | + | chr6_1:6189142-6189161 | None:intergenic | 25.0% |
| !!! | TGTAAAAAAAGTACCTCAAA+TGG | + | chr6_1:6189182-6189201 | None:intergenic | 25.0% |
| ! | AAATCAGATAACTCACATTT+CGG | - | chr6_1:6189269-6189288 | Msa0871310:intron | 25.0% |
| !!! | TAATGATCAAAAGTGGATTA+AGG | + | chr6_1:6189827-6189846 | None:intergenic | 25.0% |
| ! | TGATCTTTAATGATCAAAAG+TGG | + | chr6_1:6189834-6189853 | None:intergenic | 25.0% |
| ! | CAGCGATATAAACATAATAA+CGG | + | chr6_1:6190083-6190102 | None:intergenic | 25.0% |
| !!! | TTTTGTACTTATTTCTGTGA+AGG | - | chr6_1:6190183-6190202 | Msa0871310:intron | 25.0% |
| ! | AAATCATTCAACAAGAGTAA+TGG | - | chr6_1:6190359-6190378 | Msa0871310:intron | 25.0% |
| ! | AATCATAATGCAATGTAATC+AGG | - | chr6_1:6190761-6190780 | Msa0871310:intron | 25.0% |
| ! | TCAGTTAAATTGAGAATGAT+GGG | + | chr6_1:6190805-6190824 | None:intergenic | 25.0% |
| ! | GTGAAGAGATAAAAAAAATC+AGG | + | chr6_1:6190868-6190887 | None:intergenic | 25.0% |
| ! | AAGAAGAAATTTGCAACTTA+TGG | + | chr6_1:6191015-6191034 | None:intergenic | 25.0% |
| !! | ATTGTTTTCATGTGTGTTAT+GGG | + | chr6_1:6191328-6191347 | None:intergenic | 25.0% |
| ! | ATTGATGAAAATAAAGAGAG+GGG | + | chr6_1:6191569-6191588 | None:intergenic | 25.0% |
| !! | AGTTCAAGTTAAATCATTCA+GGG | - | chr6_1:6191902-6191921 | Msa0871310:five_prime_UTR | 25.0% |
| ATTGAAGACCAAATATCATG+AGG | + | chr6_1:6184541-6184560 | None:intergenic | 30.0% | |
| ATAAAAAGGCTGACGAAATA+TGG | + | chr6_1:6184586-6184605 | None:intergenic | 30.0% | |
| TGATGTTGCCTAGAATAAAA+AGG | + | chr6_1:6184600-6184619 | None:intergenic | 30.0% | |
| TTTATTCTAGGCAACATCAA+AGG | - | chr6_1:6184601-6184620 | Msa0871310:intron | 30.0% | |
| !! | CTCATTAACTTGTGTCTTAA+AGG | + | chr6_1:6184963-6184982 | None:intergenic | 30.0% |
| ! | AGAACGATCGTAAATTTGTT+TGG | + | chr6_1:6185656-6185675 | None:intergenic | 30.0% |
| !! | TACTTCTCAGTTCTAAGATA+AGG | - | chr6_1:6185685-6185704 | Msa0871310:intron | 30.0% |
| ! | ATGTTGGAGGAAAATTTTAG+AGG | - | chr6_1:6186248-6186267 | Msa0871310:intron | 30.0% |
| ! | TGTTGGAGGAAAATTTTAGA+GGG | - | chr6_1:6186249-6186268 | Msa0871310:intron | 30.0% |
| ! | ATGATATGAGTTGAACAACA+CGG | - | chr6_1:6186337-6186356 | Msa0871310:CDS | 30.0% |
| !! | GTTTACAAGAGTTGGTAAAT+AGG | - | chr6_1:6186387-6186406 | Msa0871310:CDS | 30.0% |
| CAACTTTCGTTGTTAATGTA+AGG | - | chr6_1:6186435-6186454 | Msa0871310:CDS | 30.0% | |
| TGTTAATGTAAGGATCTCTT+TGG | - | chr6_1:6186445-6186464 | Msa0871310:CDS | 30.0% | |
| TCTATAGTCTATGAACATTG+AGG | - | chr6_1:6186497-6186516 | Msa0871310:CDS | 30.0% | |
| TTGAAAAGATGATGAGAGAT+AGG | + | chr6_1:6186595-6186614 | None:intergenic | 30.0% | |
| TTTACATCTGTAGTCAGTTA+AGG | + | chr6_1:6187692-6187711 | None:intergenic | 30.0% | |
| GACTACAGATGTAAACAATT+AGG | - | chr6_1:6187697-6187716 | Msa0871310:CDS | 30.0% | |
| CACATCACAAACTTTAGTAA+TGG | + | chr6_1:6187724-6187743 | None:intergenic | 30.0% | |
| !!! | GTTGATTTTATGGCTAGTTT+TGG | - | chr6_1:6187765-6187784 | Msa0871310:CDS | 30.0% |
| GCTTCAAAAGTAGCAAATAA+CGG | + | chr6_1:6187838-6187857 | None:intergenic | 30.0% | |
| CAAAACATACCATAAAACAG+TGG | + | chr6_1:6187891-6187910 | None:intergenic | 30.0% | |
| ! | GTTTATGACGTTTAAAATCG+TGG | - | chr6_1:6188037-6188056 | Msa0871310:CDS | 30.0% |
| GTTACCATAGTTCAAATATG+TGG | + | chr6_1:6188126-6188145 | None:intergenic | 30.0% | |
| TGTCGTATCTGATTTCATAT+TGG | - | chr6_1:6188192-6188211 | Msa0871310:intron | 30.0% | |
| TGATTTCATATTGGATCCTT+AGG | - | chr6_1:6188201-6188220 | Msa0871310:intron | 30.0% | |
| GAAGACATTTGATATTGTGA+AGG | - | chr6_1:6188246-6188265 | Msa0871310:intron | 30.0% | |
| CCATTACAGAGAAATAAGTA+TGG | + | chr6_1:6188291-6188310 | None:intergenic | 30.0% | |
| ! | CCATACTTATTTCTCTGTAA+TGG | - | chr6_1:6188288-6188307 | Msa0871310:intron | 30.0% |
| !!! | TCTAATCTCTTTTTTGATGC+AGG | - | chr6_1:6188430-6188449 | Msa0871310:CDS | 30.0% |
| CATGTATGGAACTTTACATA+AGG | + | chr6_1:6188532-6188551 | None:intergenic | 30.0% | |
| GTAATAGCAAGTATCTTTCT+CGG | - | chr6_1:6188690-6188709 | Msa0871310:intron | 30.0% | |
| CTTCATACACAACATGATAT+AGG | + | chr6_1:6188772-6188791 | None:intergenic | 30.0% | |
| CAAATATCAAACACAAGTCA+AGG | + | chr6_1:6189022-6189041 | None:intergenic | 30.0% | |
| ATTCGTTAGAGAAATTGTAC+GGG | + | chr6_1:6189141-6189160 | None:intergenic | 30.0% | |
| GAGAGTAAAGTCATTAGTAT+TGG | - | chr6_1:6189535-6189554 | Msa0871310:intron | 30.0% | |
| CATTCAAAAAACTTCTCCTT+TGG | + | chr6_1:6189801-6189820 | None:intergenic | 30.0% | |
| !!! | CAAAGGAGAAGTTTTTTGAA+TGG | - | chr6_1:6189799-6189818 | Msa0871310:intron | 30.0% |
| GTCAGTTAAATTGAGAATGA+TGG | + | chr6_1:6190806-6190825 | None:intergenic | 30.0% | |
| ATTTGCAACTTATGGATCAT+GGG | + | chr6_1:6191007-6191026 | None:intergenic | 30.0% | |
| AATTTGCAACTTATGGATCA+TGG | + | chr6_1:6191008-6191027 | None:intergenic | 30.0% | |
| ! | TTGTTTTCATGTGTGTTATG+GGG | + | chr6_1:6191327-6191346 | None:intergenic | 30.0% |
| ! | CATTGTTTTCATGTGTGTTA+TGG | + | chr6_1:6191329-6191348 | None:intergenic | 30.0% |
| ! | TAGATATCAGTGTCATTAGA+AGG | + | chr6_1:6191487-6191506 | None:intergenic | 30.0% |
| ACACTGATATCTACAATGTT+TGG | - | chr6_1:6191494-6191513 | Msa0871310:intron | 30.0% | |
| CACTGATATCTACAATGTTT+GGG | - | chr6_1:6191495-6191514 | Msa0871310:intron | 30.0% | |
| AAAATAAAGAGAGGGGTTTA+GGG | + | chr6_1:6191562-6191581 | None:intergenic | 30.0% | |
| !!! | AAGGTTTTAAATTGCAGTCA+CGG | - | chr6_1:6191597-6191616 | Msa0871310:intron | 30.0% |
| ! | TGTAGATTTCAAGTACAAGA+AGG | - | chr6_1:6191795-6191814 | Msa0871310:exon | 30.0% |
| CCATTGTTTGAGAAAAATGT+TGG | + | chr6_1:6191874-6191893 | None:intergenic | 30.0% | |
| ! | CCAACATTTTTCTCAAACAA+TGG | - | chr6_1:6191871-6191890 | Msa0871310:five_prime_UTR | 30.0% |
| ! | GAGTTCAAGTTAAATCATTC+AGG | - | chr6_1:6191901-6191920 | Msa0871310:five_prime_UTR | 30.0% |
| TGTTGTCTTTGTAGACATCT+TGG | - | chr6_1:6184496-6184515 | Msa0871310:three_prime_UTR | 35.0% | |
| ! | TTCGTCAGCCTTTTTATTCT+AGG | - | chr6_1:6184589-6184608 | Msa0871310:intron | 35.0% |
| ! | GATTTTCTCATAAGCTCTTC+AGG | + | chr6_1:6185343-6185362 | None:intergenic | 35.0% |
| AAGACACTAGCACTTTCTTA+TGG | - | chr6_1:6185439-6185458 | Msa0871310:intron | 35.0% | |
| CTCAATGTACATTGGACAAA+TGG | + | chr6_1:6185467-6185486 | None:intergenic | 35.0% | |
| ATCGCAAGAGATGTAAATGA+GGG | + | chr6_1:6185720-6185739 | None:intergenic | 35.0% | |
| AATCGCAAGAGATGTAAATG+AGG | + | chr6_1:6185721-6185740 | None:intergenic | 35.0% | |
| ATCTCTTGCGATTGAGATTT+AGG | - | chr6_1:6185728-6185747 | Msa0871310:intron | 35.0% | |
| TTATAGGGACTAAATGTTGG+AGG | - | chr6_1:6186235-6186254 | Msa0871310:intron | 35.0% | |
| ! | TGATATGAGTTGAACAACAC+GGG | - | chr6_1:6186338-6186357 | Msa0871310:CDS | 35.0% |
| !! | GTTGGTTAGTTTACAAGAGT+TGG | - | chr6_1:6186379-6186398 | Msa0871310:CDS | 35.0% |
| ! | AAGTTGAACTCACGACTTTT+TGG | + | chr6_1:6186421-6186440 | None:intergenic | 35.0% |
| ! | TAGACTATAGAGTGCTTTCA+AGG | + | chr6_1:6186488-6186507 | None:intergenic | 35.0% |
| ATTGAGGTATGTTCTGACTA+TGG | - | chr6_1:6186513-6186532 | Msa0871310:CDS | 35.0% | |
| ACAACAAGTTTAGGAGAGTT+GGG | + | chr6_1:6186551-6186570 | None:intergenic | 35.0% | |
| TACAACAAGTTTAGGAGAGT+TGG | + | chr6_1:6186552-6186571 | None:intergenic | 35.0% | |
| TCACTTGTGTCACATCATAT+TGG | + | chr6_1:6186693-6186712 | None:intergenic | 35.0% | |
| ! | GTGATGAGATGTCATCTTTT+TGG | + | chr6_1:6186973-6186992 | None:intergenic | 35.0% |
| ! | TTTGGCTTAAAGCAAAGCAA+GGG | + | chr6_1:6187015-6187034 | None:intergenic | 35.0% |
| TACAACATCCACTTCATTGT+CGG | - | chr6_1:6187353-6187372 | Msa0871310:intron | 35.0% | |
| !! | TGACGATCGTACTCTAAAAT+CGG | + | chr6_1:6187464-6187483 | None:intergenic | 35.0% |
| GCATATTAAGGGACAGAAAA+TGG | + | chr6_1:6187518-6187537 | None:intergenic | 35.0% | |
| ! | TTTGGTGCATACATACTACA+TGG | - | chr6_1:6187578-6187597 | Msa0871310:intron | 35.0% |
| !!! | TACCAGTGCTGTTGATTTTA+TGG | - | chr6_1:6187755-6187774 | Msa0871310:CDS | 35.0% |
| !! | GGAATTGTTGGAAGTATTGT+AGG | - | chr6_1:6187787-6187806 | Msa0871310:CDS | 35.0% |
| !! | ATTGTTGGAAGTATTGTAGG+TGG | - | chr6_1:6187790-6187809 | Msa0871310:CDS | 35.0% |
| !!! | GCTACTTTTGAAGCTATTGA+AGG | - | chr6_1:6187844-6187863 | Msa0871310:CDS | 35.0% |
| ! | GTTATTTCATACTGAGATCG+TGG | - | chr6_1:6187975-6187994 | Msa0871310:CDS | 35.0% |
| ACGTCATAAACTAGGATTGT+CGG | + | chr6_1:6188028-6188047 | None:intergenic | 35.0% | |
| !! | AGATACGACATTTTGACACA+CGG | + | chr6_1:6188182-6188201 | None:intergenic | 35.0% |
| TTCATATTGGATCCTTAGGA+TGG | - | chr6_1:6188205-6188224 | Msa0871310:intron | 35.0% | |
| ATTTCGTAATATTCTCCGGT+TGG | + | chr6_1:6188337-6188356 | None:intergenic | 35.0% | |
| CCTGATTTCGTAATATTCTC+CGG | + | chr6_1:6188341-6188360 | None:intergenic | 35.0% | |
| ! | GTTCCATACATGCTTTTCAA+AGG | - | chr6_1:6188540-6188559 | Msa0871310:CDS | 35.0% |
| ! | CATCCTTTGAAAAGCATGTA+TGG | + | chr6_1:6188546-6188565 | None:intergenic | 35.0% |
| ! | CATACATGCTTTTCAAAGGA+TGG | - | chr6_1:6188544-6188563 | Msa0871310:CDS | 35.0% |
| CACATATTGTCTCCAAGAAA+GGG | + | chr6_1:6188605-6188624 | None:intergenic | 35.0% | |
| ACACATATTGTCTCCAAGAA+AGG | + | chr6_1:6188606-6188625 | None:intergenic | 35.0% | |
| !!! | TATTTTAGGGCTAACCTGAT+AGG | + | chr6_1:6188736-6188755 | None:intergenic | 35.0% |
| !! | TTGTGTATGAAGTACTGACA+TGG | - | chr6_1:6188780-6188799 | Msa0871310:CDS | 35.0% |
| ATCTCTCTATATGTCAGTGT+TGG | + | chr6_1:6188824-6188843 | None:intergenic | 35.0% | |
| ATATAGAGAGATACCAATGC+AGG | - | chr6_1:6188832-6188851 | Msa0871310:intron | 35.0% | |
| GATATTCTTGATATGTCGGA+AGG | - | chr6_1:6188923-6188942 | Msa0871310:intron | 35.0% | |
| AGGAAAGAAGAGTAAAACCT+TGG | + | chr6_1:6188959-6188978 | None:intergenic | 35.0% | |
| ! | ATCTTTTCTCGTCGATATTG+AGG | + | chr6_1:6189050-6189069 | None:intergenic | 35.0% |
| ! | ATGTGCTATTACAGCAAATG+CGG | + | chr6_1:6189233-6189252 | None:intergenic | 35.0% |
| TCTTCATGTAGGAGAAACAT+TGG | - | chr6_1:6189459-6189478 | Msa0871310:intron | 35.0% | |
| TTTACTCTCTTTGCCAAACA+TGG | + | chr6_1:6189524-6189543 | None:intergenic | 35.0% | |
| !! | AGTCATTAGTATTGGTTTGC+CGG | - | chr6_1:6189543-6189562 | Msa0871310:intron | 35.0% |
| TATCAATATACCCGAGGAAT+CGG | + | chr6_1:6189608-6189627 | None:intergenic | 35.0% | |
| CTTACTTATCAATATACCCG+AGG | + | chr6_1:6189614-6189633 | None:intergenic | 35.0% | |
| TTTATCCAAATAGGGCCTAA+AGG | + | chr6_1:6189663-6189682 | None:intergenic | 35.0% | |
| AACTACTTCAAACAGACCAA+AGG | - | chr6_1:6189782-6189801 | Msa0871310:intron | 35.0% | |
| TATCTAGATCACCATTGAAG+AGG | + | chr6_1:6189911-6189930 | None:intergenic | 35.0% | |
| TCTTCAATGGTGATCTAGAT+AGG | - | chr6_1:6189910-6189929 | Msa0871310:intron | 35.0% | |
| CTTCAATGGTGATCTAGATA+GGG | - | chr6_1:6189911-6189930 | Msa0871310:intron | 35.0% | |
| GCTGAATTCTCATTGAATGT+CGG | - | chr6_1:6190099-6190118 | Msa0871310:intron | 35.0% | |
| !! | TTATTTCTGTGAAGGCTTCA+AGG | - | chr6_1:6190191-6190210 | Msa0871310:intron | 35.0% |
| GATTTCATGCTAAAAATCCG+AGG | + | chr6_1:6190344-6190363 | None:intergenic | 35.0% | |
| TCTGATGAAGAATCTGAACT+TGG | - | chr6_1:6190383-6190402 | Msa0871310:intron | 35.0% | |
| CGTGATTGAACTGATTAAAC+CGG | + | chr6_1:6190668-6190687 | None:intergenic | 35.0% | |
| CGGTTTAATCAGTTCAATCA+CGG | - | chr6_1:6190666-6190685 | Msa0871310:intron | 35.0% | |
| !! | TGGTTTTACTAGAGTCGTAT+GGG | + | chr6_1:6191197-6191216 | None:intergenic | 35.0% |
| !!! | TTGGTTTTACTAGAGTCGTA+TGG | + | chr6_1:6191198-6191217 | None:intergenic | 35.0% |
| ATGTGTTTATAGAGAGAGTG+GGG | + | chr6_1:6191224-6191243 | None:intergenic | 35.0% | |
| GATGTGTTTATAGAGAGAGT+GGG | + | chr6_1:6191225-6191244 | None:intergenic | 35.0% | |
| AGATGTGTTTATAGAGAGAG+TGG | + | chr6_1:6191226-6191245 | None:intergenic | 35.0% | |
| ! | TGTTTGTGGTGAAAGTTTTG+CGG | + | chr6_1:6191271-6191290 | None:intergenic | 35.0% |
| GGTGCAAATAATAATGTGAG+TGG | + | chr6_1:6191305-6191324 | None:intergenic | 35.0% | |
| ! | TGTTTTCATGTGTGTTATGG+GGG | + | chr6_1:6191326-6191345 | None:intergenic | 35.0% |
| ! | GCTTCAACTGAATTTGAAGT+TGG | - | chr6_1:6191436-6191455 | Msa0871310:intron | 35.0% |
| !! | TTTGAAGTTGGTGACCTAAA+AGG | - | chr6_1:6191448-6191467 | Msa0871310:intron | 35.0% |
| ! | ATATCAGTGTCATTAGAAGG+TGG | + | chr6_1:6191484-6191503 | None:intergenic | 35.0% |
| TCCAACAAAAGGTTCCAAAT+TGG | - | chr6_1:6191520-6191539 | Msa0871310:intron | 35.0% | |
| !! | ACCAATTTGGAACCTTTTGT+TGG | + | chr6_1:6191524-6191543 | None:intergenic | 35.0% |
| GAAAATAAAGAGAGGGGTTT+AGG | + | chr6_1:6191563-6191582 | None:intergenic | 35.0% | |
| AAAAATGACACGGTCAAATG+TGG | - | chr6_1:6191646-6191665 | Msa0871310:intron | 35.0% | |
| ! | GTCAAAGTATCTAATGCATG+TGG | + | chr6_1:6191751-6191770 | None:intergenic | 35.0% |
| ! | ACATCTTGGTGAGAGTGTAA+TGG | - | chr6_1:6184510-6184529 | Msa0871310:intron | 40.0% |
| TGGAACCTCCTCATGATATT+TGG | - | chr6_1:6184530-6184549 | Msa0871310:intron | 40.0% | |
| GAAGACCAAATATCATGAGG+AGG | + | chr6_1:6184538-6184557 | None:intergenic | 40.0% | |
| AAGGTAGAGTGAACCATGAT+TGG | - | chr6_1:6184729-6184748 | Msa0871310:intron | 40.0% | |
| CTTGCAAGAAACACCAATCA+TGG | + | chr6_1:6184745-6184764 | None:intergenic | 40.0% | |
| GTTGCTTAACATGTGCTCTT+AGG | - | chr6_1:6185087-6185106 | Msa0871310:intron | 40.0% | |
| CTCATAAGCTCTTCAGGATA+TGG | + | chr6_1:6185337-6185356 | None:intergenic | 40.0% | |
| ! | AATCTAGCTCACGTTCAAAG+TGG | - | chr6_1:6186927-6186946 | Msa0871310:intron | 40.0% |
| ! | CTTTGGCTTAAAGCAAAGCA+AGG | + | chr6_1:6187016-6187035 | None:intergenic | 40.0% |
| CTTTCTTAGGTGCTCATCTT+TGG | + | chr6_1:6187033-6187052 | None:intergenic | 40.0% | |
| ! | CTCTCTCTCAAACTGTTTTC+AGG | - | chr6_1:6187490-6187509 | Msa0871310:intron | 40.0% |
| GGAAACTCAGCTATCATACT+TGG | - | chr6_1:6187553-6187572 | Msa0871310:intron | 40.0% | |
| ! | CAGCTATCATACTTGGTCTT+TGG | - | chr6_1:6187560-6187579 | Msa0871310:intron | 40.0% |
| GGACATATTACTGTGTTGTG+AGG | - | chr6_1:6187599-6187618 | Msa0871310:CDS | 40.0% | |
| AGCCATAAAATCAACAGCAC+TGG | + | chr6_1:6187760-6187779 | None:intergenic | 40.0% | |
| !!! | TGGCTAGTTTTGGGAATTGT+TGG | - | chr6_1:6187775-6187794 | Msa0871310:CDS | 40.0% |
| AATTTCGACAACGGTCTAGA+TGG | + | chr6_1:6188148-6188167 | None:intergenic | 40.0% | |
| CCGGAGAATATTACGAAATC+AGG | - | chr6_1:6188338-6188357 | Msa0871310:intron | 40.0% | |
| TGCAGGCTACATTATATTCC+TGG | - | chr6_1:6188447-6188466 | Msa0871310:CDS | 40.0% | |
| ! | ACAATATGTGTGCCTTTTGC+AGG | - | chr6_1:6188615-6188634 | Msa0871310:intron | 40.0% |
| !! | ATGAAGTACTGACATGGATG+CGG | - | chr6_1:6188786-6188805 | Msa0871310:CDS | 40.0% |
| ! | TAAGGGCTTAGTTCTTGAGA+AGG | + | chr6_1:6189105-6189124 | None:intergenic | 40.0% |
| CGGGAAATAGTCTTTGCTAA+GGG | + | chr6_1:6189122-6189141 | None:intergenic | 40.0% | |
| ACGGGAAATAGTCTTTGCTA+AGG | + | chr6_1:6189123-6189142 | None:intergenic | 40.0% | |
| ! | AGCTGAGTTGAAACCATTTG+AGG | - | chr6_1:6189166-6189185 | Msa0871310:intron | 40.0% |
| ! | TGTGCTATTACAGCAAATGC+GGG | + | chr6_1:6189232-6189251 | None:intergenic | 40.0% |
| CTCATGAGTCGTGTAGTTAT+TGG | - | chr6_1:6189417-6189436 | Msa0871310:intron | 40.0% | |
| TGAGTCGTGTAGTTATTGGA+TGG | - | chr6_1:6189421-6189440 | Msa0871310:intron | 40.0% | |
| TGCAAGGAATGTCTTCATGT+AGG | - | chr6_1:6189448-6189467 | Msa0871310:intron | 40.0% | |
| !! | GGAGAAACATTGGTTTCTCA+AGG | - | chr6_1:6189469-6189488 | Msa0871310:intron | 40.0% |
| GACATACAAGAAGCCATGTT+TGG | - | chr6_1:6189508-6189527 | Msa0871310:intron | 40.0% | |
| GCTTGAAGAAGACAATAAGC+CGG | + | chr6_1:6189565-6189584 | None:intergenic | 40.0% | |
| ! | CTCTATTAAAGCCGATTCCT+CGG | - | chr6_1:6189594-6189613 | Msa0871310:intron | 40.0% |
| ! | TCTATTAAAGCCGATTCCTC+GGG | - | chr6_1:6189595-6189614 | Msa0871310:intron | 40.0% |
| ! | TTGCTGTTCTAGTTGCCTTT+AGG | - | chr6_1:6189645-6189664 | Msa0871310:intron | 40.0% |
| AAATCTTTCCGTGTCTGAAG+AGG | - | chr6_1:6189866-6189885 | Msa0871310:intron | 40.0% | |
| ! | TGAAGAGGACTAACTTGCAA+AGG | + | chr6_1:6189896-6189915 | None:intergenic | 40.0% |
| TGCAAGTTAGTCCTCTTCAA+TGG | - | chr6_1:6189897-6189916 | Msa0871310:intron | 40.0% | |
| !! | TTTAACTTTTGGTCCTCCTC+CGG | - | chr6_1:6189941-6189960 | Msa0871310:intron | 40.0% |
| CAAGGTTTCCGACATACAAA+AGG | - | chr6_1:6190231-6190250 | Msa0871310:intron | 40.0% | |
| ! | TCGAATCGCCTTTTGTATGT+CGG | + | chr6_1:6190242-6190261 | None:intergenic | 40.0% |
| !! | GAAGAGCTTGCTGATAAACA+TGG | - | chr6_1:6190284-6190303 | Msa0871310:intron | 40.0% |
| !!! | GATCAAAGAGTGCTTTTCCT+CGG | - | chr6_1:6190324-6190343 | Msa0871310:intron | 40.0% |
| TTTCTATGCCATTCACAGGT+AGG | + | chr6_1:6190505-6190524 | None:intergenic | 40.0% | |
| TACCTGTGAATGGCATAGAA+AGG | - | chr6_1:6190504-6190523 | Msa0871310:intron | 40.0% | |
| ACCTGTGAATGGCATAGAAA+GGG | - | chr6_1:6190505-6190524 | Msa0871310:intron | 40.0% | |
| ATGGCATAGAAAGGGATTGA+AGG | - | chr6_1:6190513-6190532 | Msa0871310:intron | 40.0% | |
| CCTCTGCATCATAGTTTAAC+CGG | - | chr6_1:6190646-6190665 | Msa0871310:intron | 40.0% | |
| GATTGAACTGAGATCGAACT+AGG | + | chr6_1:6190745-6190764 | None:intergenic | 40.0% | |
| !! | ATTGAGAATGATGGGTTCCT+CGG | + | chr6_1:6190797-6190816 | None:intergenic | 40.0% |
| AGTATGTGACTAAACCATCG+TGG | - | chr6_1:6190981-6191000 | Msa0871310:intron | 40.0% | |
| TACTAGAGTCGTATGGGAAA+TGG | + | chr6_1:6191191-6191210 | None:intergenic | 40.0% | |
| ! | GTGAAAGTTTTGCGGAGTTA+AGG | + | chr6_1:6191263-6191282 | None:intergenic | 40.0% |
| !!! | TGGTGCAAGAGTTTTGTTTG+TGG | + | chr6_1:6191285-6191304 | None:intergenic | 40.0% |
| ! | AACCAAGAGAAGCACAAGTA+AGG | + | chr6_1:6191386-6191405 | None:intergenic | 40.0% |
| !! | AAGTTGGTGACCTAAAAGGT+TGG | - | chr6_1:6191452-6191471 | Msa0871310:intron | 40.0% |
| !! | AGTTGGTGACCTAAAAGGTT+GGG | - | chr6_1:6191453-6191472 | Msa0871310:intron | 40.0% |
| ATGTTTGGGCTTCCAACAAA+AGG | - | chr6_1:6191509-6191528 | Msa0871310:intron | 40.0% | |
| TACGAATGGAGTCACCAATT+TGG | + | chr6_1:6191537-6191556 | None:intergenic | 40.0% | |
| ! | GGTCGGTTCAACTTTCATTA+AGG | - | chr6_1:6191667-6191686 | Msa0871310:intron | 40.0% |
| GTACAAGAAGGATTCAGTGA+TGG | - | chr6_1:6191807-6191826 | Msa0871310:five_prime_UTR | 40.0% | |
| ! | AAGGATTCAGTGATGGAAGT+TGG | - | chr6_1:6191814-6191833 | Msa0871310:five_prime_UTR | 40.0% |
| AAAATGTTAACCAGTGCCCC+CGG | - | chr6_1:6185141-6185160 | Msa0871310:intron | 45.0% | |
| AACACGGGACAACTTTACCA+GGG | - | chr6_1:6186353-6186372 | Msa0871310:CDS | 45.0% | |
| ACAACTTTACCAGGGAAGGT+TGG | - | chr6_1:6186361-6186380 | Msa0871310:CDS | 45.0% | |
| GTAAACTAACCAACCTTCCC+TGG | + | chr6_1:6186373-6186392 | None:intergenic | 45.0% | |
| AGTTTAGGAGAGTTGGGCTT+CGG | + | chr6_1:6186545-6186564 | None:intergenic | 45.0% | |
| GCAAAGCAAGGGTGAGTTTA+TGG | + | chr6_1:6187004-6187023 | None:intergenic | 45.0% | |
| CTACATCTCCGACAATGAAG+TGG | + | chr6_1:6187364-6187383 | None:intergenic | 45.0% | |
| CACTTCATTGTCGGAGATGT+AGG | - | chr6_1:6187362-6187381 | Msa0871310:intron | 45.0% | |
| ATTGTAGGTGGTGCAGCTTA+TGG | - | chr6_1:6187802-6187821 | Msa0871310:CDS | 45.0% | |
| CATACTGAGATCGTGGTTAC+TGG | - | chr6_1:6187982-6188001 | Msa0871310:CDS | 45.0% | |
| TGGATCCTTAGGATGGAACA+TGG | - | chr6_1:6188212-6188231 | Msa0871310:intron | 45.0% | |
| ATGGATGACCTGAGACAAGA+CGG | - | chr6_1:6188307-6188326 | Msa0871310:intron | 45.0% | |
| TCGTAATATTCTCCGGTTGG+TGG | + | chr6_1:6188334-6188353 | None:intergenic | 45.0% | |
| GCTGTTGTAGCAGCAATTCT+CGG | - | chr6_1:6188471-6188490 | Msa0871310:CDS | 45.0% | |
| CTGTTGTAGCAGCAATTCTC+GGG | - | chr6_1:6188472-6188491 | Msa0871310:CDS | 45.0% | |
| CGTTTGTTTCGTGACCTCAT+TGG | - | chr6_1:6188570-6188589 | Msa0871310:CDS | 45.0% | |
| ATGGCCATAGAAGGATAGCA+AGG | + | chr6_1:6188641-6188660 | None:intergenic | 45.0% | |
| TGCTATCCTTCTATGGCCAT+TGG | - | chr6_1:6188641-6188660 | Msa0871310:intron | 45.0% | |
| !! | CAAGTATCTTTCTCGGTGCT+CGG | - | chr6_1:6188697-6188716 | Msa0871310:intron | 45.0% |
| !! | AAGTATCTTTCTCGGTGCTC+GGG | - | chr6_1:6188698-6188717 | Msa0871310:intron | 45.0% |
| AAGAAAGAGGACTCCTGCAT+TGG | + | chr6_1:6188848-6188867 | None:intergenic | 45.0% | |
| CAGGAGTCCTCTTTCTTGTT+TGG | - | chr6_1:6188851-6188870 | Msa0871310:intron | 45.0% | |
| ! | CCTCTTTCTTGTTTGGCCTT+CGG | - | chr6_1:6188858-6188877 | Msa0871310:intron | 45.0% |
| AAGTTGCGACAATGTACCGA+AGG | + | chr6_1:6188877-6188896 | None:intergenic | 45.0% | |
| ! | GTTATTGGATGGCTTGTGCA+AGG | - | chr6_1:6189432-6189451 | Msa0871310:intron | 45.0% |
| AGTTGCCTTTAGGCCCTATT+TGG | - | chr6_1:6189655-6189674 | Msa0871310:intron | 45.0% | |
| CAGTATCATCAGCTGCATTG+AGG | + | chr6_1:6189758-6189777 | None:intergenic | 45.0% | |
| AAGGTAGTCCTCTTCAGACA+CGG | + | chr6_1:6189877-6189896 | None:intergenic | 45.0% | |
| TCTAGCCAATGCGTCAAGTT+CGG | + | chr6_1:6189985-6190004 | None:intergenic | 45.0% | |
| !! | AACTTGACGCATTGGCTAGA+AGG | - | chr6_1:6189985-6190004 | Msa0871310:intron | 45.0% |
| AGTCTACACCTACCTGTGAA+TGG | - | chr6_1:6190494-6190513 | Msa0871310:intron | 45.0% | |
| TCCCTTTCTATGCCATTCAC+AGG | + | chr6_1:6190509-6190528 | None:intergenic | 45.0% | |
| CCGGTTAAACTATGATGCAG+AGG | + | chr6_1:6190649-6190668 | None:intergenic | 45.0% | |
| AATCAGGATCAAACCAACCG+AGG | - | chr6_1:6190777-6190796 | Msa0871310:intron | 45.0% | |
| GTATGGGAAATGGAGGTAGT+GGG | + | chr6_1:6191181-6191200 | None:intergenic | 45.0% | |
| TAGAGTCGTATGGGAAATGG+AGG | + | chr6_1:6191188-6191207 | None:intergenic | 45.0% | |
| TATAGAGAGAGTGGGGAAGT+TGG | + | chr6_1:6191217-6191236 | None:intergenic | 45.0% | |
| ! | CAAGAGAAGCACAAGTAAGG+TGG | + | chr6_1:6191383-6191402 | None:intergenic | 45.0% |
| CACCTTACTTGTGCTTCTCT+TGG | - | chr6_1:6191381-6191400 | Msa0871310:intron | 45.0% | |
| ! | GTGGAACAACCCAACCTTTT+AGG | + | chr6_1:6191465-6191484 | None:intergenic | 45.0% |
| ATGACACGGTCAAATGTGGT+CGG | - | chr6_1:6191650-6191669 | Msa0871310:intron | 45.0% | |
| ! | TTCAGTGATGGAAGTTGGCA+AGG | - | chr6_1:6191819-6191838 | Msa0871310:five_prime_UTR | 45.0% |
| GGGACATTCTACTTCATCAG+TGG | - | chr6_1:6191922-6191941 | Msa0871310:five_prime_UTR | 45.0% | |
| TACTTCATCAGTGGTGCATC+AGG | - | chr6_1:6191931-6191950 | Msa0871310:five_prime_UTR | 45.0% | |
| !! | TAAAAATCAAAAAAAAAAAA+AGG | - | chr6_1:6184886-6184905 | Msa0871310:intron | 5.0% |
| !!! | TATTTAATTTCATAATTTTA+TGG | + | chr6_1:6185590-6185609 | None:intergenic | 5.0% |
| !! | AATTATGAAATTAAATAAAA+AGG | - | chr6_1:6185593-6185612 | Msa0871310:intron | 5.0% |
| !!! | TATGAATTTTTATATTTTTA+CGG | - | chr6_1:6186061-6186080 | Msa0871310:CDS | 5.0% |
| !! | ACAAAAATTAAATTAAAAAT+AGG | - | chr6_1:6186188-6186207 | Msa0871310:intron | 5.0% |
| !! | CAAAAATTAAATTAAAAATA+GGG | - | chr6_1:6186189-6186208 | Msa0871310:intron | 5.0% |
| !!! | AATATATTTTTAAAAAAGAA+TGG | + | chr6_1:6187104-6187123 | None:intergenic | 5.0% |
| !! | ATTGTATAAATAAATTATAA+CGG | + | chr6_1:6191626-6191645 | None:intergenic | 5.0% |
| !!! | TATTATTTTTAAAGAAAAAA+AGG | + | chr6_1:6191722-6191741 | None:intergenic | 5.0% |
| AAATGTTAACCAGTGCCCCC+GGG | - | chr6_1:6185142-6185161 | Msa0871310:intron | 50.0% | |
| CAACACGGGACAACTTTACC+AGG | - | chr6_1:6186352-6186371 | Msa0871310:CDS | 50.0% | |
| TTTAGGAGAGTTGGGCTTCG+GGG | + | chr6_1:6186543-6186562 | None:intergenic | 50.0% | |
| GTTTAGGAGAGTTGGGCTTC+GGG | + | chr6_1:6186544-6186563 | None:intergenic | 50.0% | |
| GTGCTCCATGTTCCATCCTA+AGG | + | chr6_1:6188220-6188239 | None:intergenic | 50.0% | |
| ATTGCTGCTACAACAGCACC+AGG | + | chr6_1:6188468-6188487 | None:intergenic | 50.0% | |
| AGGATAGCAAGGCCTGCAAA+AGG | + | chr6_1:6188630-6188649 | None:intergenic | 50.0% | |
| ! | CAGGCCTTGCTATCCTTCTA+TGG | - | chr6_1:6188634-6188653 | Msa0871310:intron | 50.0% |
| CAACAGCCAATGGCCATAGA+AGG | + | chr6_1:6188650-6188669 | None:intergenic | 50.0% | |
| ! | CTATGGCCATTGGCTGTTGT+TGG | - | chr6_1:6188651-6188670 | Msa0871310:intron | 50.0% |
| CCGAAGGCCAAACAAGAAAG+AGG | + | chr6_1:6188861-6188880 | None:intergenic | 50.0% | |
| CGGAAGGATCTTGCTTTCCA+AGG | - | chr6_1:6188939-6188958 | Msa0871310:intron | 50.0% | |
| !! | AAGTTCGGCTAGTTTGCGGT+CGG | + | chr6_1:6189970-6189989 | None:intergenic | 50.0% |
| !! | CGTCAAGTTCGGCTAGTTTG+CGG | + | chr6_1:6189974-6189993 | None:intergenic | 50.0% |
| ACTAGCCGAACTTGACGCAT+TGG | - | chr6_1:6189977-6189996 | Msa0871310:intron | 50.0% | |
| ACTATGATGCAGAGGTCTCG+TGG | + | chr6_1:6190641-6190660 | None:intergenic | 50.0% | |
| !! | AGAATGATGGGTTCCTCGGT+TGG | + | chr6_1:6190793-6190812 | None:intergenic | 50.0% |
| TTATGGATCATGGGCCACGA+TGG | + | chr6_1:6190998-6191017 | None:intergenic | 50.0% | |
| CGTATGGGAAATGGAGGTAG+TGG | + | chr6_1:6191182-6191201 | None:intergenic | 50.0% | |
| ! | GAGAAGCACAAGTAAGGTGG+TGG | + | chr6_1:6191380-6191399 | None:intergenic | 50.0% |
| ! | AGGGGTTTAGGGCATACGAA+TGG | + | chr6_1:6191551-6191570 | None:intergenic | 50.0% |
| AATGTTAACCAGTGCCCCCG+GGG | - | chr6_1:6185143-6185162 | Msa0871310:intron | 55.0% | |
| TGCTTCCTTAACCAGTGCCC+CGG | + | chr6_1:6185163-6185182 | None:intergenic | 55.0% | |
| CGGGACAACTTTACCAGGGA+AGG | - | chr6_1:6186357-6186376 | Msa0871310:CDS | 55.0% | |
| ! | TTGGTGGTCCGTCTTGTCTC+AGG | + | chr6_1:6188318-6188337 | None:intergenic | 55.0% |
| AGACAAGACGGACCACCAAC+CGG | - | chr6_1:6188319-6188338 | Msa0871310:intron | 55.0% | |
| AACGCGCCAACAACAGCCAA+TGG | + | chr6_1:6188660-6188679 | None:intergenic | 55.0% | |
| GGCTGGAGTTGTTGCCTATC+AGG | - | chr6_1:6188719-6188738 | Msa0871310:CDS | 55.0% | |
| ! | GCTAGTTTGCGGTCGGATTC+CGG | + | chr6_1:6189963-6189982 | None:intergenic | 55.0% |
| !! | TGGGAAATGGAGGTAGTGGG+TGG | + | chr6_1:6191178-6191197 | None:intergenic | 55.0% |
| TTCCTTAACCAGTGCCCCGG+GGG | + | chr6_1:6185160-6185179 | None:intergenic | 60.0% | |
| CTTCCTTAACCAGTGCCCCG+GGG | + | chr6_1:6185161-6185180 | None:intergenic | 60.0% | |
| GCTTCCTTAACCAGTGCCCC+GGG | + | chr6_1:6185162-6185181 | None:intergenic | 60.0% | |
| CGTGACCTCATTGGTCGCGA+AGG | - | chr6_1:6188579-6188598 | Msa0871310:CDS | 60.0% | |
| AAGGGCCTTCGCGACCAATG+AGG | + | chr6_1:6188587-6188606 | None:intergenic | 60.0% | |
| TGGTCGCGAAGGCCCTTTCT+TGG | - | chr6_1:6188590-6188609 | Msa0871310:CDS | 60.0% | |
| !! | ATCTTTCTCGGTGCTCGGGC+TGG | - | chr6_1:6188702-6188721 | Msa0871310:intron | 60.0% |
| AGTTTGCGGTCGGATTCCGG+AGG | + | chr6_1:6189960-6189979 | None:intergenic | 60.0% | |
| TTGCGGTCGGATTCCGGAGG+AGG | + | chr6_1:6189957-6189976 | None:intergenic | 65.0% | |
| !! | TGCCCCCGGGGCACTGGTTA+AGG | - | chr6_1:6185155-6185174 | Msa0871310:intron | 70.0% |
| AACCAGTGCCCCCGGGGCAC+TGG | - | chr6_1:6185149-6185168 | Msa0871310:intron | 75.0% | |
| ! | AACCAGTGCCCCGGGGGCAC+TGG | + | chr6_1:6185154-6185173 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 6184360 | 6191967 | 6184360 | ID=Msa0871310;Name=Msa0871310 |
| chr6_1 | mRNA | 6184360 | 6191967 | 6184360 | ID=Msa0871310-mRNA-1;Parent=Msa0871310;Name=Msa0871310-mRNA-1;_AED=0.16;_eAED=0.16;_QI=169|0.8|0.90|1|0.8|0.63|11|272|567 |
| chr6_1 | exon | 6184360 | 6184527 | 6184360 | ID=Msa0871310-mRNA-1:exon:1898;Parent=Msa0871310-mRNA-1 |
| chr6_1 | exon | 6185793 | 6186122 | 6185793 | ID=Msa0871310-mRNA-1:exon:1897;Parent=Msa0871310-mRNA-1 |
| chr6_1 | exon | 6186321 | 6186561 | 6186321 | ID=Msa0871310-mRNA-1:exon:1896;Parent=Msa0871310-mRNA-1 |
| chr6_1 | exon | 6186711 | 6186873 | 6186711 | ID=Msa0871310-mRNA-1:exon:1895;Parent=Msa0871310-mRNA-1 |
| chr6_1 | exon | 6187140 | 6187281 | 6187140 | ID=Msa0871310-mRNA-1:exon:1894;Parent=Msa0871310-mRNA-1 |
| chr6_1 | exon | 6187367 | 6187473 | 6187367 | ID=Msa0871310-mRNA-1:exon:1893;Parent=Msa0871310-mRNA-1 |
| chr6_1 | exon | 6187587 | 6187875 | 6187587 | ID=Msa0871310-mRNA-1:exon:1892;Parent=Msa0871310-mRNA-1 |
| chr6_1 | exon | 6187968 | 6188104 | 6187968 | ID=Msa0871310-mRNA-1:exon:1891;Parent=Msa0871310-mRNA-1 |
| chr6_1 | exon | 6188427 | 6188622 | 6188427 | ID=Msa0871310-mRNA-1:exon:1890;Parent=Msa0871310-mRNA-1 |
| chr6_1 | exon | 6188707 | 6188815 | 6188707 | ID=Msa0871310-mRNA-1:exon:1889;Parent=Msa0871310-mRNA-1 |
| chr6_1 | exon | 6191705 | 6191967 | 6191705 | ID=Msa0871310-mRNA-1:exon:1888;Parent=Msa0871310-mRNA-1 |
| chr6_1 | five_prime_UTR | 6191799 | 6191967 | 6191799 | ID=Msa0871310-mRNA-1:five_prime_utr;Parent=Msa0871310-mRNA-1 |
| chr6_1 | CDS | 6191705 | 6191798 | 6191705 | ID=Msa0871310-mRNA-1:cds;Parent=Msa0871310-mRNA-1 |
| chr6_1 | CDS | 6188707 | 6188815 | 6188707 | ID=Msa0871310-mRNA-1:cds;Parent=Msa0871310-mRNA-1 |
| chr6_1 | CDS | 6188427 | 6188622 | 6188427 | ID=Msa0871310-mRNA-1:cds;Parent=Msa0871310-mRNA-1 |
| chr6_1 | CDS | 6187968 | 6188104 | 6187968 | ID=Msa0871310-mRNA-1:cds;Parent=Msa0871310-mRNA-1 |
| chr6_1 | CDS | 6187587 | 6187875 | 6187587 | ID=Msa0871310-mRNA-1:cds;Parent=Msa0871310-mRNA-1 |
| chr6_1 | CDS | 6187367 | 6187473 | 6187367 | ID=Msa0871310-mRNA-1:cds;Parent=Msa0871310-mRNA-1 |
| chr6_1 | CDS | 6187140 | 6187281 | 6187140 | ID=Msa0871310-mRNA-1:cds;Parent=Msa0871310-mRNA-1 |
| chr6_1 | CDS | 6186711 | 6186873 | 6186711 | ID=Msa0871310-mRNA-1:cds;Parent=Msa0871310-mRNA-1 |
| chr6_1 | CDS | 6186321 | 6186561 | 6186321 | ID=Msa0871310-mRNA-1:cds;Parent=Msa0871310-mRNA-1 |
| chr6_1 | CDS | 6185897 | 6186122 | 6185897 | ID=Msa0871310-mRNA-1:cds;Parent=Msa0871310-mRNA-1 |
| chr6_1 | three_prime_UTR | 6185793 | 6185896 | 6185793 | ID=Msa0871310-mRNA-1:three_prime_utr;Parent=Msa0871310-mRNA-1 |
| chr6_1 | three_prime_UTR | 6184360 | 6184527 | 6184360 | ID=Msa0871310-mRNA-1:three_prime_utr;Parent=Msa0871310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
