AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0714340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0714340 MtrunA17_Chr5g0401611 98.638 514 7 0 1 514 1 514 0.0 1023
Msa0714340 MtrunA17_Chr4g0053701 84.708 497 70 1 18 514 25 515 0.0 848
Msa0714340 MtrunA17_Chr3g0134491 77.282 471 101 1 24 494 44 508 0.0 753
Msa0714340 MtrunA17_Chr8g0347551 67.223 479 153 1 16 494 51 525 0.0 679
Msa0714340 MtrunA17_Chr3g0124991 43.077 455 235 8 52 490 34 480 1.46e-107 330
Msa0714340 MtrunA17_Chr2g0333811 41.667 456 244 8 51 491 44 492 4.36e-106 327
Msa0714340 MtrunA17_Chr3g0124971 40.162 493 268 9 16 490 4 487 2.57e-100 312
Msa0714340 MtrunA17_Chr4g0012701 77.215 79 17 1 1 79 1 78 1.47e-29 110
Msa0714340 MtrunA17_Chr7g0264231 26.824 425 257 14 61 466 38 427 1.68e-26 114
Msa0714340 MtrunA17_Chr2g0309271 26.836 354 237 9 97 444 3 340 4.17e-26 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0714340 AT2G23150.1 81.933 476 85 1 25 500 27 501 0.0 805
Msa0714340 AT5G67330.1 76.087 506 115 2 2 507 5 504 0.0 778
Msa0714340 AT1G47240.1 78.243 478 100 1 17 494 34 507 0.0 777
Msa0714340 AT4G18790.1 67.775 481 148 1 11 491 33 506 0.0 665
Msa0714340 AT1G15960.1 42.619 420 227 7 51 463 34 446 8.63e-105 323
Msa0714340 AT1G80830.1 42.619 420 227 7 51 463 42 454 1.96e-101 315
Msa0714340 AT1G80830.2 42.619 420 227 7 51 463 42 454 1.96e-101 315
Msa0714340 AT5G03280.1 25.389 386 265 9 61 439 24 393 3.51e-29 122

Find 148 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAATAACTTGCAATGATTC+AGG 0.220051 5_1:-6976888 Msa0714340:three_prime_UTR
TATTCCCAATCCTGTATATA+TGG 0.228743 5_1:-6978413 Msa0714340:CDS
CTCTCATTTGCATGGATGTT+TGG 0.230544 5_1:-6978919 Msa0714340:CDS
TTCCTCTTTCTTGAGAATTA+TGG 0.232223 5_1:-6978991 Msa0714340:CDS
AGTGGTGGTACCTTATTTAT+TGG 0.241079 5_1:-6976862 Msa0714340:three_prime_UTR
GTAATGGCCTTGTTCCTCTT+TGG 0.242402 5_1:-6980177 Msa0714340:CDS
CTTGGGCAAGGATTGTTCTT+TGG 0.245807 5_1:-6980276 Msa0714340:CDS
TGCCGTTCTTATTGCTATAA+TGG 0.260123 5_1:-6978944 Msa0714340:CDS
GGTTTCAAAGGAACAAATAA+TGG 0.283702 5_1:-6978130 Msa0714340:CDS
TATACATGCATTATATTTGT+AGG 0.299436 5_1:+6976665 None:intergenic
CTTAACGTCATAGACTTAAA+AGG 0.303904 5_1:+6976740 None:intergenic
TAATGGCCTTGTTCCTCTTT+GGG 0.305235 5_1:-6980176 Msa0714340:CDS
TCTTATGTGGGCTACGGCTA+TGG 0.312128 5_1:-6980383 Msa0714340:CDS
CGCTGTTATGGCTTCTTATG+TGG 0.313493 5_1:-6980396 Msa0714340:CDS
TCTGATATTCAAGAGGTTAT+AGG 0.318147 5_1:-6980226 Msa0714340:CDS
CTGATATTCAAGAGGTTATA+GGG 0.327415 5_1:-6980225 Msa0714340:CDS
TAGGGAGTGCTATTGCTATT+AGG 0.333861 5_1:-6980207 Msa0714340:CDS
AGATCTCCTTCCAAGTTTCC+AGG 0.335579 5_1:+6980445 None:intergenic
AAGCGTGTTTAATTTGATAT+TGG 0.345752 5_1:+6976609 None:intergenic
CTTCAATCTGGTGCAATTGC+TGG 0.345914 5_1:-6980424 Msa0714340:CDS
TTGCTGGGTATTCGCTGTTA+TGG 0.347044 5_1:-6980408 Msa0714340:CDS
ATTGATTCCCTTGCTTTGTT+TGG 0.349044 5_1:-6978151 Msa0714340:CDS
GAATTATGGTGTGAGGAAAT+TGG 0.350066 5_1:-6978977 Msa0714340:CDS
TTCCTGGCTTGTGGCTGCTC+TGG 0.351790 5_1:-6977258 Msa0714340:CDS
GACAAATATATTAATAATAA+AGG 0.352339 5_1:+6978536 None:intergenic
TCCTGTATATATGGGGTATT+GGG 0.357893 5_1:-6978404 Msa0714340:CDS
GTACAGACAACCAATAAATA+AGG 0.360066 5_1:+6976852 None:intergenic
CTTATGTGGGCTACGGCTAT+GGG 0.366792 5_1:-6980382 Msa0714340:CDS
AACAGCTTGTTGTATAGTTC+TGG 0.368091 5_1:+6978707 None:intergenic
GTTTCAAAGGAACAAATAAT+GGG 0.368092 5_1:-6978129 Msa0714340:CDS
TCTGAAAAGGTTGTCGTTGT+TGG 0.368268 5_1:-6980592 Msa0714340:CDS
GCTCTGGTGATAGTGATAAA+TGG 0.371973 5_1:-6977242 Msa0714340:CDS
ACGTAACGGAGCTTGAAATA+AGG 0.375796 5_1:+6977120 None:intergenic
TAGCGCAATGGTGGACTCTA+TGG 0.377756 5_1:+6978566 None:intergenic
CAGTACCTTCAGGAGAAGTA+TGG 0.378008 5_1:-6978444 Msa0714340:CDS
ATCCTGTATATATGGGGTAT+TGG 0.391603 5_1:-6978405 Msa0714340:CDS
CTTGCTTTGTTTGGTTTCAA+AGG 0.392387 5_1:-6978142 Msa0714340:CDS
ACAAATAATAAGCATTAGTA+TGG 0.398746 5_1:+6976915 None:intergenic
TGTTGCTACGGGGAGACATT+TGG 0.399325 5_1:-6980326 Msa0714340:CDS
ATGACTGAAGTTGCTTTGAT+TGG 0.400536 5_1:-6980250 Msa0714340:CDS
GCAGTAACATACCAAGTTAC+TGG 0.403560 5_1:+6976803 None:intergenic
CGCTTACGATTCATCTGAAA+AGG 0.410529 5_1:-6980605 Msa0714340:CDS
TTTCAATACAGACCATTTCC+TGG 0.412146 5_1:-6977274 Msa0714340:intron
TTAGTATGGTCAATAAGAAT+AGG 0.413825 5_1:+6976929 None:intergenic
CAACAAGCTGTTGGAGTTGT+TGG 0.415507 5_1:-6978696 Msa0714340:CDS
GGCCTTGTTCCTCTTTGGGC+TGG 0.416642 5_1:-6980172 Msa0714340:CDS
ATGGTACTGAAATAGCAAAT+AGG 0.419910 5_1:-6978488 Msa0714340:CDS
ATAATGGGCACTTTCAAGAT+TGG 0.421189 5_1:-6978114 Msa0714340:CDS
AGCAAGGGAATCAATGCAAA+AGG 0.422846 5_1:+6978159 None:intergenic
ATTCCCAATCCTGTATATAT+GGG 0.424368 5_1:-6978412 Msa0714340:CDS
ATAGTTCTGGAGCTAAGTTT+AGG 0.430966 5_1:+6978720 None:intergenic
GATGGTGTTGATGTTCTTGT+TGG 0.436854 5_1:-6978883 Msa0714340:intron
TTCGTAGGCTTCTTCTTCGT+CGG 0.440294 5_1:+6980567 None:intergenic
TGCTCTTGTTCAATCCAGGC+AGG 0.441118 5_1:-6978637 Msa0714340:CDS
TACCCCATATATACAGGATT+GGG 0.442489 5_1:+6978409 None:intergenic
TAATAACTTGCAATGATTCA+GGG 0.443476 5_1:-6976887 Msa0714340:three_prime_UTR
AAATGCAGGGCAGTACCTTC+AGG 0.445908 5_1:-6978454 Msa0714340:CDS
CATAGTTTCTTCCATGAAAA+CGG 0.452161 5_1:+6980514 None:intergenic
TTGTCATTACTGCTTTAGAT+TGG 0.452490 5_1:-6980147 Msa0714340:intron
CAGTGTAGATGCCAGTAACT+TGG 0.453546 5_1:-6976814 Msa0714340:three_prime_UTR
AGCAGCCACAAGCCAGGAAA+TGG 0.465152 5_1:+6977262 None:intergenic
GGTCAGAGTAGCACTATTAC+TGG 0.465242 5_1:-6978369 Msa0714340:CDS
GCAAGGTTAGGTGTTGCTAC+GGG 0.467938 5_1:-6980337 Msa0714340:CDS
TAGTATGGTCAATAAGAATA+GGG 0.470343 5_1:+6976930 None:intergenic
GGATGAGGGCGTTGATTACT+CGG 0.472145 5_1:-6978290 Msa0714340:CDS
TATTGGACGTGAAAAGAAAC+AGG 0.472918 5_1:+6976626 None:intergenic
GCTGTTATGGCTTCTTATGT+GGG 0.476897 5_1:-6980395 Msa0714340:CDS
CACCATAATTCTCAAGAAAG+AGG 0.481932 5_1:+6978989 None:intergenic
ATTCTGCTCTTGTTCAATCC+AGG 0.482576 5_1:-6978641 Msa0714340:CDS
CTATGGTTATTCAGTGGACC+AGG 0.490109 5_1:-6980496 Msa0714340:CDS
TGTCACAACTGTGTTTGCTA+AGG 0.491481 5_1:-6978517 Msa0714340:CDS
ACCCAATACCCCATATATAC+AGG 0.494023 5_1:+6978403 None:intergenic
TACGAAGCTGACGTGGACTC+TGG 0.498286 5_1:-6980550 Msa0714340:CDS
ACAAGAACATCAACACCATC+TGG 0.500462 5_1:+6978886 None:intergenic
GTCACAACTGTGTTTGCTAA+GGG 0.500490 5_1:-6978516 Msa0714340:CDS
TTGGAAGGAGATCTTCAATC+TGG 0.500957 5_1:-6980436 Msa0714340:CDS
AGCAAGGTTAGGTGTTGCTA+CGG 0.506542 5_1:-6980338 Msa0714340:CDS
GTGGATAATGATTCGCGTTG+CGG 0.508398 5_1:+6980685 None:intergenic
ATTCCTCAAAATCATGAAGT+AGG 0.509274 5_1:-6976993 Msa0714340:three_prime_UTR
TTCAATCTGGTGCAATTGCT+GGG 0.512314 5_1:-6980423 Msa0714340:CDS
ATACCCCATATATACAGGAT+TGG 0.515369 5_1:+6978408 None:intergenic
GTTGTTCTAACAGAGGTTGT+TGG 0.516654 5_1:+6980650 None:intergenic
TTGGATCCTGGAAACTTGGA+AGG 0.517550 5_1:-6980451 Msa0714340:CDS
AGGATCGGTCTTGTAAATGC+AGG 0.518450 5_1:-6978468 Msa0714340:CDS
ATGGCTTCTTATGTGGGCTA+CGG 0.520318 5_1:-6980389 Msa0714340:CDS
ACTATTACTGGTACATATGC+TGG 0.527712 5_1:-6978357 Msa0714340:CDS
AGAACTATAAATTATTCTTG+TGG 0.534360 5_1:+6980882 None:intergenic
GTAGAGATGAGTATCCTACT+TGG 0.535483 5_1:-6980294 Msa0714340:CDS
CAAGATTGGCTCTGTCCTCA+AGG 0.536538 5_1:-6978100 Msa0714340:intron
ATAAGTGCAACTATCATAGT+CGG 0.536590 5_1:+6978252 None:intergenic
AGAGTCCACGTCAGCTTCGT+AGG 0.542462 5_1:+6980552 None:intergenic
TAATGGCTCTCTCATTTGCA+TGG 0.545987 5_1:-6978927 Msa0714340:CDS
TAAGTGCAACTATCATAGTC+GGG 0.551179 5_1:+6978253 None:intergenic
GATCGAGTTAATCTTTGCCA+AGG 0.551708 5_1:+6977092 None:intergenic
ACAGACCATTTCCTGGCTTG+TGG 0.551762 5_1:-6977267 Msa0714340:intron
TTGCAATGATTCAGGGGCAG+TGG 0.551880 5_1:-6976880 Msa0714340:three_prime_UTR
GCTATACTCATCAGAAAACC+TGG 0.552760 5_1:+6980478 None:intergenic
CAATGATTCAGGGGCAGTGG+TGG 0.554290 5_1:-6976877 Msa0714340:three_prime_UTR
TCTTGTTGTTGTTCTAACAG+AGG 0.555158 5_1:+6980643 None:intergenic
CTTTGAAACCAAACAAAGCA+AGG 0.557493 5_1:+6978143 None:intergenic
TTAGAACAACAACAAGAAGA+AGG 0.558025 5_1:-6980637 Msa0714340:CDS
GGTATTGGGTTACTAGCAGC+TGG 0.560371 5_1:-6978390 Msa0714340:CDS
CACCAGAGCAGCCACAAGCC+AGG 0.561920 5_1:+6977256 None:intergenic
AGAACTATACAACAAGCTGT+TGG 0.566192 5_1:-6978705 Msa0714340:CDS
CACTGCTCCACTCACTTCAG+AGG 0.566376 5_1:+6977196 None:intergenic
GCAAGGGAATCAATGCAAAA+GGG 0.569154 5_1:+6978160 None:intergenic
TTCTTGAGAATTATGGTGTG+AGG 0.571214 5_1:-6978984 Msa0714340:CDS
TAGAGATGAGTATCCTACTT+GGG 0.572208 5_1:-6980293 Msa0714340:CDS
CTGTAAAATTTGATATACAA+TGG 0.572483 5_1:-6976776 Msa0714340:three_prime_UTR
AGAACAATCCTTGCCCAAGT+AGG 0.575207 5_1:+6980280 None:intergenic
TTTGAAACCAAACAAAGCAA+GGG 0.595987 5_1:+6978144 None:intergenic
GGAGACAACTAGCGCAATGG+TGG 0.598232 5_1:+6978557 None:intergenic
CGCCTCCATACTTCTCCTGA+AGG 0.601191 5_1:+6978439 None:intergenic
CACCAGCCCAAAGAGGAACA+AGG 0.602260 5_1:+6980170 None:intergenic
ACTTATATTTGATTCTTCAG+AGG 0.602962 5_1:-6978235 Msa0714340:CDS
ATGAGTATCCTACTTGGGCA+AGG 0.603524 5_1:-6980288 Msa0714340:CDS
ATATGCTGGACAATTCATCA+TGG 0.605595 5_1:-6978343 Msa0714340:CDS
GAACTAGTCACTGTCGAGTG+TGG 0.612021 5_1:+6980747 None:intergenic
GATTGGTTCTGATATTCAAG+AGG 0.612261 5_1:-6980233 Msa0714340:CDS
TTGTTGGTGAGACATGGTGG+TGG 0.619267 5_1:+6980666 None:intergenic
CAGAGGTTGTTGGTGAGACA+TGG 0.620954 5_1:+6980660 None:intergenic
AGAAGCCTACGAAGCTGACG+TGG 0.623584 5_1:-6980557 Msa0714340:CDS
GGATCGGTCTTGTAAATGCA+GGG 0.624462 5_1:-6978467 Msa0714340:CDS
AGCCATTATAGCAATAAGAA+CGG 0.624673 5_1:+6978942 None:intergenic
CTTCAGGAGAAGTATGGAGG+CGG 0.626449 5_1:-6978438 Msa0714340:CDS
GCTGGACAATTCATCATGGG+TGG 0.626939 5_1:-6978339 Msa0714340:CDS
TATGCTGGACAATTCATCAT+GGG 0.627133 5_1:-6978342 Msa0714340:CDS
AATAACTTGCAATGATTCAG+GGG 0.628208 5_1:-6976886 Msa0714340:three_prime_UTR
ATGACAACACCAGCCCAAAG+AGG 0.629953 5_1:+6980163 None:intergenic
AATTGAGAGCTTCTTGAACG+CGG 0.634426 5_1:+6978595 None:intergenic
ACTGAAATAGCAAATAGGAT+CGG 0.636009 5_1:-6978483 Msa0714340:CDS
TTATGTGGGCTACGGCTATG+GGG 0.641019 5_1:-6980381 Msa0714340:CDS
AAAGGAGACAACTAGCGCAA+TGG 0.641305 5_1:+6978554 None:intergenic
AAGAAACTATGGTTATTCAG+TGG 0.641832 5_1:-6980502 Msa0714340:CDS
TTCCCAATCCTGTATATATG+GGG 0.642639 5_1:-6978411 Msa0714340:CDS
TACCTTCAGGAGAAGTATGG+AGG 0.648168 5_1:-6978441 Msa0714340:CDS
AGTTTCTTCCATGAAAACGG+TGG 0.652794 5_1:+6980517 None:intergenic
TTGCCAAGGTGAAAACGTAA+CGG 0.654921 5_1:+6977106 None:intergenic
GAATGCAAGAATACATTGTG+AGG 0.660682 5_1:+6978660 None:intergenic
CAAGGTTAGGTGTTGCTACG+GGG 0.666495 5_1:-6980336 Msa0714340:CDS
GTTGACTGCTGAACTTTGCG+TGG 0.669251 5_1:+6977019 None:intergenic
TTTGGTGAAGCAAAGCCAGA+TGG 0.673749 5_1:-6978901 Msa0714340:CDS
GGCTGCTCAACTCTCCGTGG+TGG 0.674172 5_1:+6977058 None:intergenic
CGTGGTAGCTACTATCTCTG+TGG 0.702912 5_1:+6977037 None:intergenic
TGTGGCTGCTCAACTCTCCG+TGG 0.704473 5_1:+6977055 None:intergenic
ATCAAAGACAGTTACCACCA+CGG 0.705378 5_1:-6977072 Msa0714340:CDS
AGGTTGTTGGTGAGACATGG+TGG 0.723150 5_1:+6980663 None:intergenic
TGTTGTGTGTGTAATAACAG+CGG 0.786619 5_1:-6977165 Msa0714340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTATCTTATTATTGTTT+TGG - chr5_1:6977631-6977650 Msa0714340:intron 10.0%
!!! ATTTGAAATTCAAATTAATA+TGG + chr5_1:6978210-6978229 None:intergenic 10.0%
!!! TTAAATATTTAACTTTTATG+TGG - chr5_1:6978466-6978485 Msa0714340:CDS 10.0%
!! GACAAATATATTAATAATAA+AGG + chr5_1:6978968-6978987 None:intergenic 10.0%
!!! TAAATAATTTTTTTTTCTCA+GGG - chr5_1:6980807-6980826 Msa0714340:five_prime_UTR 10.0%
!!! TGTTAATTTTCATTTAAAGT+AGG - chr5_1:6977429-6977448 Msa0714340:intron 15.0%
!!! TTTAGTTTCTTTTTTTTGTT+TGG - chr5_1:6977502-6977521 Msa0714340:intron 15.0%
!!! GTAAATAATTTTTTTTTCTC+AGG - chr5_1:6980806-6980825 Msa0714340:five_prime_UTR 15.0%
!! AAAAAGATAGGTTTGAAAAT+TGG + chr5_1:6976779-6976798 None:intergenic 20.0%
!!! TAAATTTCTGTTGCTTTAAA+TGG - chr5_1:6977377-6977396 Msa0714340:intron 20.0%
!!! TCTTATTATTGTTTTGGAAT+TGG - chr5_1:6977637-6977656 Msa0714340:intron 20.0%
!!! TTTTCTTGATATTATTACAG+TGG - chr5_1:6977661-6977680 Msa0714340:intron 20.0%
!! TTTCTTGATATTATTACAGT+GGG - chr5_1:6977662-6977681 Msa0714340:intron 20.0%
!!! TGAATTTGAAGTTGAAAAAA+TGG - chr5_1:6979190-6979209 Msa0714340:intron 20.0%
!!! TCTGAAATTGTGTTTATAAA+TGG + chr5_1:6979612-6979631 None:intergenic 20.0%
!! TTGATAAAAATATTAACGAG+GGG + chr5_1:6980083-6980102 None:intergenic 20.0%
!!! GTTGATAAAAATATTAACGA+GGG + chr5_1:6980084-6980103 None:intergenic 20.0%
!! ACAAATAATAAGCATTAGTA+TGG + chr5_1:6980589-6980608 None:intergenic 20.0%
!! CTGTAAAATTTGATATACAA+TGG - chr5_1:6980725-6980744 Msa0714340:five_prime_UTR 20.0%
!! TATACATGCATTATATTTGT+AGG + chr5_1:6980839-6980858 None:intergenic 20.0%
!!! GTTTTGTTTTCTGCATAATT+GGG + chr5_1:6976686-6976705 None:intergenic 25.0%
!!! TGTTTTGTTTTCTGCATAAT+TGG + chr5_1:6976687-6976706 None:intergenic 25.0%
! CTTATGTGTTGTAAAAAGAT+AGG + chr5_1:6976791-6976810 None:intergenic 25.0%
! AGAAGATACTTCAAAATAAG+TGG + chr5_1:6977587-6977606 None:intergenic 25.0%
!! TGAAGTATCTTCTTTGATTA+AGG - chr5_1:6977594-6977613 Msa0714340:intron 25.0%
!!! ATAGTGTTTTTTAGTTGTAC+TGG - chr5_1:6977687-6977706 Msa0714340:intron 25.0%
!!! CATCTGTACTCTTTTTTTTT+TGG + chr5_1:6977748-6977767 None:intergenic 25.0%
! CTTTCTTAGATTCATTTCTT+TGG - chr5_1:6978257-6978276 Msa0714340:CDS 25.0%
! CATTATTAAGTCAATTTCCT+AGG - chr5_1:6978691-6978710 Msa0714340:CDS 25.0%
! ACTTATATTTGATTCTTCAG+AGG - chr5_1:6979266-6979285 Msa0714340:intron 25.0%
!!! CATTAGATGTTTTGAATGAA+TGG - chr5_1:6979292-6979311 Msa0714340:intron 25.0%
! GTTTCAAAGGAACAAATAAT+GGG - chr5_1:6979372-6979391 Msa0714340:intron 25.0%
!! TATATGATTCCTTTGCATTT+TGG - chr5_1:6979424-6979443 Msa0714340:intron 25.0%
! GACATATATGAATATGCAAA+TGG + chr5_1:6979502-6979521 None:intergenic 25.0%
! GAAATTGTGTTTATAAATGG+TGG + chr5_1:6979609-6979628 None:intergenic 25.0%
! GTCTCATATTGAATGATATA+AGG + chr5_1:6979635-6979654 None:intergenic 25.0%
! ATTGACATATTCTTACCAAA+GGG - chr5_1:6980024-6980043 Msa0714340:intron 25.0%
! TGATAAAAATATTAACGAGG+GGG + chr5_1:6980082-6980101 None:intergenic 25.0%
!! CGTTGATAAAAATATTAACG+AGG + chr5_1:6980085-6980104 None:intergenic 25.0%
!!! CGTTAATATTTTTATCAACG+TGG - chr5_1:6980085-6980104 Msa0714340:intron 25.0%
!!! AGTTTGATGCTTTGATTTTT+TGG - chr5_1:6980166-6980185 Msa0714340:CDS 25.0%
! TAGTATGGTCAATAAGAATA+GGG + chr5_1:6980574-6980593 None:intergenic 25.0%
! TTAGTATGGTCAATAAGAAT+AGG + chr5_1:6980575-6980594 None:intergenic 25.0%
!! TAATAACTTGCAATGATTCA+GGG - chr5_1:6980614-6980633 Msa0714340:CDS 25.0%
!!! ACGTTAAGAGTGTTATTTTT+AGG - chr5_1:6980776-6980795 Msa0714340:five_prime_UTR 25.0%
TTAGAACAACAACAAGAAGA+AGG - chr5_1:6976864-6976883 Msa0714340:three_prime_UTR 30.0%
CATAGTTTCTTCCATGAAAA+CGG + chr5_1:6976990-6977009 None:intergenic 30.0%
AAGAAACTATGGTTATTCAG+TGG - chr5_1:6976999-6977018 Msa0714340:three_prime_UTR 30.0%
! TCTGATGAGTATAGCATTTT+TGG - chr5_1:6977031-6977050 Msa0714340:three_prime_UTR 30.0%
TCTGATATTCAAGAGGTTAT+AGG - chr5_1:6977275-6977294 Msa0714340:intron 30.0%
CTGATATTCAAGAGGTTATA+GGG - chr5_1:6977276-6977295 Msa0714340:intron 30.0%
!! GCTATTAGGATTTTGAGTAA+TGG - chr5_1:6977308-6977327 Msa0714340:intron 30.0%
! TTGTCATTACTGCTTTAGAT+TGG - chr5_1:6977354-6977373 Msa0714340:intron 30.0%
! TCTGCAATTATAGCATTTTC+TGG - chr5_1:6977471-6977490 Msa0714340:intron 30.0%
!!! TAACCGTTTTTAAGTTTGCA+GGG + chr5_1:6977535-6977554 None:intergenic 30.0%
!!! ACTAAGTTTTAGGTTCCATA+TGG - chr5_1:6977810-6977829 Msa0714340:intron 30.0%
! ATCAAGTTTAGAACCTAAAC+TGG + chr5_1:6977841-6977860 None:intergenic 30.0%
!! GTCTTTAGAGTTTCTTGTTA+TGG - chr5_1:6977884-6977903 Msa0714340:intron 30.0%
!!! TGAACCATATGTTTTGATAG+GGG + chr5_1:6977919-6977938 None:intergenic 30.0%
!!! CTGAACCATATGTTTTGATA+GGG + chr5_1:6977920-6977939 None:intergenic 30.0%
!!! ACTGAACCATATGTTTTGAT+AGG + chr5_1:6977921-6977940 None:intergenic 30.0%
CATATGCACAAATTGAAGTT+AGG + chr5_1:6977973-6977992 None:intergenic 30.0%
AGAACAACTCTACATTCAAA+AGG + chr5_1:6978053-6978072 None:intergenic 30.0%
ACTCGTATATTACTTGATGA+AGG - chr5_1:6978085-6978104 Msa0714340:intron 30.0%
CTCGTATATTACTTGATGAA+GGG - chr5_1:6978086-6978105 Msa0714340:intron 30.0%
!! ATCTAAGAAAGCACTCTAAA+AGG + chr5_1:6978248-6978267 None:intergenic 30.0%
CATGGATTCATCAATATTTC+TGG + chr5_1:6978359-6978378 None:intergenic 30.0%
AAAAGCAAGACAATTGATCA+TGG + chr5_1:6978377-6978396 None:intergenic 30.0%
!!! ATTGTCTTGCTTTTTCGTTT+TGG - chr5_1:6978383-6978402 Msa0714340:CDS 30.0%
TTTGGCATTTAAGAAGCTAT+TGG - chr5_1:6978401-6978420 Msa0714340:CDS 30.0%
AAGAAAGAGGAAAATGAAAC+TGG + chr5_1:6978502-6978521 None:intergenic 30.0%
TTCCTCTTTCTTGAGAATTA+TGG - chr5_1:6978510-6978529 Msa0714340:CDS 30.0%
AGCCATTATAGCAATAAGAA+CGG + chr5_1:6978562-6978581 None:intergenic 30.0%
! TTTTGCCTTTGTAGGTATTT+TGG - chr5_1:6978756-6978775 Msa0714340:intron 30.0%
! ATGGTACTGAAATAGCAAAT+AGG - chr5_1:6979013-6979032 Msa0714340:intron 30.0%
ACTGAAATAGCAAATAGGAT+CGG - chr5_1:6979018-6979037 Msa0714340:intron 30.0%
TATTCCCAATCCTGTATATA+TGG - chr5_1:6979088-6979107 Msa0714340:intron 30.0%
ATTCCCAATCCTGTATATAT+GGG - chr5_1:6979089-6979108 Msa0714340:intron 30.0%
TGAAGTTGAAAAAATGGATG+AGG - chr5_1:6979196-6979215 Msa0714340:intron 30.0%
GAAGTTGAAAAAATGGATGA+GGG - chr5_1:6979197-6979216 Msa0714340:intron 30.0%
ATAAGTGCAACTATCATAGT+CGG + chr5_1:6979252-6979271 None:intergenic 30.0%
! TTTGAAACCAAACAAAGCAA+GGG + chr5_1:6979360-6979379 None:intergenic 30.0%
GGTTTCAAAGGAACAAATAA+TGG - chr5_1:6979371-6979390 Msa0714340:intron 30.0%
GTTATCCATTGTCAGTTTAT+TGG - chr5_1:6979464-6979483 Msa0714340:intron 30.0%
TCCACTACCATGTTAAAATT+TGG - chr5_1:6979752-6979771 Msa0714340:intron 30.0%
CCACTACCATGTTAAAATTT+GGG - chr5_1:6979753-6979772 Msa0714340:intron 30.0%
! ACCATGTTAAAATTTGGGTT+CGG - chr5_1:6979758-6979777 Msa0714340:intron 30.0%
AGATGGAATAGGTCTATATT+GGG + chr5_1:6979898-6979917 None:intergenic 30.0%
AAGATGGAATAGGTCTATAT+TGG + chr5_1:6979899-6979918 None:intergenic 30.0%
GATAATTTCTCTTACCTAAG+TGG - chr5_1:6979987-6980006 Msa0714340:intron 30.0%
GATTGACATATTCTTACCAA+AGG - chr5_1:6980023-6980042 Msa0714340:intron 30.0%
!! ATTTTTATCAACGTGGATTG+AGG - chr5_1:6980092-6980111 Msa0714340:intron 30.0%
TGGTCTGTATTGAAATCATA+AGG + chr5_1:6980222-6980241 None:intergenic 30.0%
ATTCCTCAAAATCATGAAGT+AGG - chr5_1:6980508-6980527 Msa0714340:CDS 30.0%
! CTAATAACTTGCAATGATTC+AGG - chr5_1:6980613-6980632 Msa0714340:CDS 30.0%
! AATAACTTGCAATGATTCAG+GGG - chr5_1:6980615-6980634 Msa0714340:CDS 30.0%
GTACAGACAACCAATAAATA+AGG + chr5_1:6980652-6980671 None:intergenic 30.0%
CTTAACGTCATAGACTTAAA+AGG + chr5_1:6980764-6980783 None:intergenic 30.0%
! TTTTCTGCATAATTGGGTTC+TGG + chr5_1:6976680-6976699 None:intergenic 35.0%
!! TCTTGTTGTTGTTCTAACAG+AGG + chr5_1:6976861-6976880 None:intergenic 35.0%
! CTTTTCAGATGAATCGTAAG+CGG + chr5_1:6976898-6976917 None:intergenic 35.0%
! TAAGAATTCCACCGTTTTCA+TGG - chr5_1:6976976-6976995 Msa0714340:three_prime_UTR 35.0%
! CGTTTTCATGGAAGAAACTA+TGG - chr5_1:6976988-6977007 Msa0714340:three_prime_UTR 35.0%
!! AGTATAGCATTTTTGGATCC+TGG - chr5_1:6977038-6977057 Msa0714340:three_prime_UTR 35.0%
!! ATTTTTGGATCCTGGAAACT+TGG - chr5_1:6977046-6977065 Msa0714340:exon 35.0%
TAGAGATGAGTATCCTACTT+GGG - chr5_1:6977208-6977227 Msa0714340:CDS 35.0%
! ATGACTGAAGTTGCTTTGAT+TGG - chr5_1:6977251-6977270 Msa0714340:CDS 35.0%
!! GATTGGTTCTGATATTCAAG+AGG - chr5_1:6977268-6977287 Msa0714340:intron 35.0%
TGACCCTGCAAACTTAAAAA+CGG - chr5_1:6977529-6977548 Msa0714340:intron 35.0%
!!! GTAACCGTTTTTAAGTTTGC+AGG + chr5_1:6977536-6977555 None:intergenic 35.0%
! GTTTAGAACCTAAACTGGTA+GGG + chr5_1:6977836-6977855 None:intergenic 35.0%
! AGTTTAGAACCTAAACTGGT+AGG + chr5_1:6977837-6977856 None:intergenic 35.0%
!! GGTTCTAAACTTGATGTAAG+AGG - chr5_1:6977846-6977865 Msa0714340:intron 35.0%
TCTAAACTTGATGTAAGAGG+AGG - chr5_1:6977849-6977868 Msa0714340:intron 35.0%
CTAAACTTGATGTAAGAGGA+GGG - chr5_1:6977850-6977869 Msa0714340:intron 35.0%
ACATCCCCTATCAAAACATA+TGG - chr5_1:6977912-6977931 Msa0714340:intron 35.0%
TGAGAAGAGAAGACAACAAA+TGG - chr5_1:6977991-6978010 Msa0714340:intron 35.0%
! CTAAAAGGTGTGTTTCTTCA+TGG + chr5_1:6978233-6978252 None:intergenic 35.0%
TAGATGTCATGTAAACCTGT+TGG - chr5_1:6978292-6978311 Msa0714340:CDS 35.0%
AGATGTCATGTAAACCTGTT+GGG - chr5_1:6978293-6978312 Msa0714340:CDS 35.0%
AGGAAAATGAAACTGGAACA+AGG + chr5_1:6978495-6978514 None:intergenic 35.0%
CACCATAATTCTCAAGAAAG+AGG + chr5_1:6978515-6978534 None:intergenic 35.0%
TTCTTGAGAATTATGGTGTG+AGG - chr5_1:6978517-6978536 Msa0714340:CDS 35.0%
GAATTATGGTGTGAGGAAAT+TGG - chr5_1:6978524-6978543 Msa0714340:CDS 35.0%
TGCCGTTCTTATTGCTATAA+TGG - chr5_1:6978557-6978576 Msa0714340:CDS 35.0%
! TGCTTTCATTTTGCCTTTGT+AGG - chr5_1:6978748-6978767 Msa0714340:intron 35.0%
AGGAACCAAAATACCTACAA+AGG + chr5_1:6978764-6978783 None:intergenic 35.0%
!! ATAGTTCTGGAGCTAAGTTT+AGG + chr5_1:6978784-6978803 None:intergenic 35.0%
!! AACAGCTTGTTGTATAGTTC+TGG + chr5_1:6978797-6978816 None:intergenic 35.0%
AGAACTATACAACAAGCTGT+TGG - chr5_1:6978796-6978815 Msa0714340:intron 35.0%
GAATGCAAGAATACATTGTG+AGG + chr5_1:6978844-6978863 None:intergenic 35.0%
TTCCCAATCCTGTATATATG+GGG - chr5_1:6979090-6979109 Msa0714340:intron 35.0%
TACCCCATATATACAGGATT+GGG + chr5_1:6979095-6979114 None:intergenic 35.0%
ATACCCCATATATACAGGAT+TGG + chr5_1:6979096-6979115 None:intergenic 35.0%
ATCCTGTATATATGGGGTAT+TGG - chr5_1:6979096-6979115 Msa0714340:intron 35.0%
! TCCTGTATATATGGGGTATT+GGG - chr5_1:6979097-6979116 Msa0714340:intron 35.0%
ACTATTACTGGTACATATGC+TGG - chr5_1:6979144-6979163 Msa0714340:intron 35.0%
ATATGCTGGACAATTCATCA+TGG - chr5_1:6979158-6979177 Msa0714340:intron 35.0%
TATGCTGGACAATTCATCAT+GGG - chr5_1:6979159-6979178 Msa0714340:intron 35.0%
TAAGTGCAACTATCATAGTC+GGG + chr5_1:6979251-6979270 None:intergenic 35.0%
! ATTGATTCCCTTGCTTTGTT+TGG - chr5_1:6979350-6979369 Msa0714340:intron 35.0%
!! CTTTGAAACCAAACAAAGCA+AGG + chr5_1:6979361-6979380 None:intergenic 35.0%
!! CTTGCTTTGTTTGGTTTCAA+AGG - chr5_1:6979359-6979378 Msa0714340:intron 35.0%
!! ATAATGGGCACTTTCAAGAT+TGG - chr5_1:6979387-6979406 Msa0714340:intron 35.0%
CAAAGGAATCATATACCTTG+AGG + chr5_1:6979419-6979438 None:intergenic 35.0%
CATGTCCAATAAACTGACAA+TGG + chr5_1:6979472-6979491 None:intergenic 35.0%
ATGTAAAGAGTCGTAACGTT+TGG - chr5_1:6979533-6979552 Msa0714340:intron 35.0%
TGTAAAGAGTCGTAACGTTT+GGG - chr5_1:6979534-6979553 Msa0714340:intron 35.0%
!!! CTTACAAGCCACTTTTGTAA+GGG + chr5_1:6979575-6979594 None:intergenic 35.0%
!! CCCAAATTTTAACATGGTAG+TGG + chr5_1:6979756-6979775 None:intergenic 35.0%
!! GGCCTTATTTAATCAAACGT+GGG - chr5_1:6979842-6979861 Msa0714340:intron 35.0%
GTCCCACGTTTGATTAAATA+AGG + chr5_1:6979847-6979866 None:intergenic 35.0%
AAAATATTAACGAGGGGGTA+GGG + chr5_1:6980077-6980096 None:intergenic 35.0%
AAAAATATTAACGAGGGGGT+AGG + chr5_1:6980078-6980097 None:intergenic 35.0%
TTTCAATACAGACCATTTCC+TGG - chr5_1:6980227-6980246 Msa0714340:CDS 35.0%
! GATAAATGGCTATCTTTTGC+TGG - chr5_1:6980273-6980292 Msa0714340:CDS 35.0%
TGTTGTGTGTGTAATAACAG+CGG - chr5_1:6980336-6980355 Msa0714340:CDS 35.0%
! TGTCCTACTTCATGATTTTG+AGG + chr5_1:6980514-6980533 None:intergenic 35.0%
! AGTGGTGGTACCTTATTTAT+TGG - chr5_1:6980639-6980658 Msa0714340:CDS 35.0%
TATTGGACGTGAAAAGAAAC+AGG + chr5_1:6980878-6980897 None:intergenic 35.0%
GTTGTTCTAACAGAGGTTGT+TGG + chr5_1:6976854-6976873 None:intergenic 40.0%
CGCTTACGATTCATCTGAAA+AGG - chr5_1:6976896-6976915 Msa0714340:three_prime_UTR 40.0%
TCTGAAAAGGTTGTCGTTGT+TGG - chr5_1:6976909-6976928 Msa0714340:three_prime_UTR 40.0%
AGTTTCTTCCATGAAAACGG+TGG + chr5_1:6976987-6977006 None:intergenic 40.0%
GCTATACTCATCAGAAAACC+TGG + chr5_1:6977026-6977045 None:intergenic 40.0%
TTGGAAGGAGATCTTCAATC+TGG - chr5_1:6977065-6977084 Msa0714340:CDS 40.0%
TTCAATCTGGTGCAATTGCT+GGG - chr5_1:6977078-6977097 Msa0714340:CDS 40.0%
GCTGTTATGGCTTCTTATGT+GGG - chr5_1:6977106-6977125 Msa0714340:CDS 40.0%
! TGATTCAGCTTTTGTCAGCA+AGG - chr5_1:6977147-6977166 Msa0714340:CDS 40.0%
GTAGAGATGAGTATCCTACT+TGG - chr5_1:6977207-6977226 Msa0714340:CDS 40.0%
!! TAGGGAGTGCTATTGCTATT+AGG - chr5_1:6977294-6977313 Msa0714340:intron 40.0%
!! TAATGGCCTTGTTCCTCTTT+GGG - chr5_1:6977325-6977344 Msa0714340:intron 40.0%
AGCCTATGATGTCAGCTTAT+TGG - chr5_1:6977560-6977579 Msa0714340:intron 40.0%
GCCTATGATGTCAGCTTATT+GGG - chr5_1:6977561-6977580 Msa0714340:intron 40.0%
! GTGTCGAGACACTAAGTTTT+AGG - chr5_1:6977800-6977819 Msa0714340:intron 40.0%
TCATGTAAACCTGTTGGGAT+TGG - chr5_1:6978298-6978317 Msa0714340:CDS 40.0%
CATGTAAACCTGTTGGGATT+GGG - chr5_1:6978299-6978318 Msa0714340:CDS 40.0%
TAATGGCTCTCTCATTTGCA+TGG - chr5_1:6978574-6978593 Msa0714340:CDS 40.0%
CTCTCATTTGCATGGATGTT+TGG - chr5_1:6978582-6978601 Msa0714340:CDS 40.0%
ACAAGAACATCAACACCATC+TGG + chr5_1:6978618-6978637 None:intergenic 40.0%
!! GATGGTGTTGATGTTCTTGT+TGG - chr5_1:6978618-6978637 Msa0714340:CDS 40.0%
ATTCTGCTCTTGTTCAATCC+AGG - chr5_1:6978860-6978879 Msa0714340:intron 40.0%
AATTGAGAGCTTCTTGAACG+CGG + chr5_1:6978909-6978928 None:intergenic 40.0%
! TGTCACAACTGTGTTTGCTA+AGG - chr5_1:6978984-6979003 Msa0714340:CDS 40.0%
! GTCACAACTGTGTTTGCTAA+GGG - chr5_1:6978985-6979004 Msa0714340:CDS 40.0%
!! GTGTTTGCTAAGGGCTTTTA+TGG - chr5_1:6978994-6979013 Msa0714340:CDS 40.0%
ACCCAATACCCCATATATAC+AGG + chr5_1:6979101-6979120 None:intergenic 40.0%
GCAAGGGAATCAATGCAAAA+GGG + chr5_1:6979344-6979363 None:intergenic 40.0%
AGCAAGGGAATCAATGCAAA+AGG + chr5_1:6979345-6979364 None:intergenic 40.0%
GCAGTTCAACCAAAATGCAA+AGG + chr5_1:6979436-6979455 None:intergenic 40.0%
! ACTTTTGTAAGGGTTGAGCT+AGG + chr5_1:6979565-6979584 None:intergenic 40.0%
TAGCTCAACCCTTACAAAAG+TGG - chr5_1:6979564-6979583 Msa0714340:intron 40.0%
!!! CCTTACAAGCCACTTTTGTA+AGG + chr5_1:6979576-6979595 None:intergenic 40.0%
! CCTTACAAAAGTGGCTTGTA+AGG - chr5_1:6979573-6979592 Msa0714340:intron 40.0%
TTACCCGAATAGCTTGATAG+CGG - chr5_1:6979697-6979716 Msa0714340:intron 40.0%
ATCCAAGATCCATTGGAGAT+TGG + chr5_1:6979728-6979747 None:intergenic 40.0%
GGAATCTATCCAAGATCCAT+TGG + chr5_1:6979735-6979754 None:intergenic 40.0%
!! GCCGAACCCAAATTTTAACA+TGG + chr5_1:6979762-6979781 None:intergenic 40.0%
AGTTTGGTAGGGGTTGAATT+GGG + chr5_1:6979784-6979803 None:intergenic 40.0%
AATGTCCACCACTCACATTT+CGG - chr5_1:6979820-6979839 Msa0714340:intron 40.0%
!! GGGCCTTATTTAATCAAACG+TGG - chr5_1:6979841-6979860 Msa0714340:intron 40.0%
CTTGTTGAACTTAGCCACTT+AGG + chr5_1:6980004-6980023 None:intergenic 40.0%
!! TACCAAAGGGACTAGTTTCA+AGG - chr5_1:6980037-6980056 Msa0714340:intron 40.0%
CATAAGGATATCATGAGCTG+TGG + chr5_1:6980206-6980225 None:intergenic 40.0%
! GCTCTGGTGATAGTGATAAA+TGG - chr5_1:6980259-6980278 Msa0714340:CDS 40.0%
!!! TTCTTTTCCTCTGAAGTGAG+TGG - chr5_1:6980298-6980317 Msa0714340:CDS 40.0%
! ACGTAACGGAGCTTGAAATA+AGG + chr5_1:6980384-6980403 None:intergenic 40.0%
TTGCCAAGGTGAAAACGTAA+CGG + chr5_1:6980398-6980417 None:intergenic 40.0%
GATCGAGTTAATCTTTGCCA+AGG + chr5_1:6980412-6980431 None:intergenic 40.0%
ATCAAAGACAGTTACCACCA+CGG - chr5_1:6980429-6980448 Msa0714340:CDS 40.0%
GCAGTAACATACCAAGTTAC+TGG + chr5_1:6980701-6980720 None:intergenic 40.0%
GTGGATAATGATTCGCGTTG+CGG + chr5_1:6976819-6976838 None:intergenic 45.0%
TTCGTAGGCTTCTTCTTCGT+CGG + chr5_1:6976937-6976956 None:intergenic 45.0%
CTATGGTTATTCAGTGGACC+AGG - chr5_1:6977005-6977024 Msa0714340:three_prime_UTR 45.0%
TTGGATCCTGGAAACTTGGA+AGG - chr5_1:6977050-6977069 Msa0714340:exon 45.0%
AGATCTCCTTCCAAGTTTCC+AGG + chr5_1:6977059-6977078 None:intergenic 45.0%
CTTCAATCTGGTGCAATTGC+TGG - chr5_1:6977077-6977096 Msa0714340:CDS 45.0%
TTGCTGGGTATTCGCTGTTA+TGG - chr5_1:6977093-6977112 Msa0714340:CDS 45.0%
CGCTGTTATGGCTTCTTATG+TGG - chr5_1:6977105-6977124 Msa0714340:CDS 45.0%
! ATGGCTTCTTATGTGGGCTA+CGG - chr5_1:6977112-6977131 Msa0714340:CDS 45.0%
! CAGCTTTTGTCAGCAAGGTT+AGG - chr5_1:6977152-6977171 Msa0714340:CDS 45.0%
!! AGCAAGGTTAGGTGTTGCTA+CGG - chr5_1:6977163-6977182 Msa0714340:CDS 45.0%
ATGAGTATCCTACTTGGGCA+AGG - chr5_1:6977213-6977232 Msa0714340:CDS 45.0%
AGAACAATCCTTGCCCAAGT+AGG + chr5_1:6977224-6977243 None:intergenic 45.0%
CTTGGGCAAGGATTGTTCTT+TGG - chr5_1:6977225-6977244 Msa0714340:CDS 45.0%
!! GTAATGGCCTTGTTCCTCTT+TGG - chr5_1:6977324-6977343 Msa0714340:intron 45.0%
GCCCAATAAGCTGACATCAT+AGG + chr5_1:6977565-6977584 None:intergenic 45.0%
GTATTCTTCCCAATCCCAAC+AGG + chr5_1:6978310-6978329 None:intergenic 45.0%
TTTGGTGAAGCAAAGCCAGA+TGG - chr5_1:6978600-6978619 Msa0714340:CDS 45.0%
TATGAAGCATGAGCACACCT+AGG + chr5_1:6978711-6978730 None:intergenic 45.0%
CAACAAGCTGTTGGAGTTGT+TGG - chr5_1:6978805-6978824 Msa0714340:intron 45.0%
! CAGGTTGACCCCAAAAAGAA+AGG - chr5_1:6978883-6978902 Msa0714340:intron 45.0%
! TGAACGCGGCCTTTCTTTTT+GGG + chr5_1:6978895-6978914 None:intergenic 45.0%
! TTGAACGCGGCCTTTCTTTT+TGG + chr5_1:6978896-6978915 None:intergenic 45.0%
AAAGGAGACAACTAGCGCAA+TGG + chr5_1:6978950-6978969 None:intergenic 45.0%
! AGGATCGGTCTTGTAAATGC+AGG - chr5_1:6979033-6979052 Msa0714340:intron 45.0%
! GGATCGGTCTTGTAAATGCA+GGG - chr5_1:6979034-6979053 Msa0714340:intron 45.0%
CAGTACCTTCAGGAGAAGTA+TGG - chr5_1:6979057-6979076 Msa0714340:intron 45.0%
! TACCTTCAGGAGAAGTATGG+AGG - chr5_1:6979060-6979079 Msa0714340:intron 45.0%
GGTCAGAGTAGCACTATTAC+TGG - chr5_1:6979132-6979151 Msa0714340:intron 45.0%
ACACCTCTCATGCTTAGTGT+TGG - chr5_1:6979662-6979681 Msa0714340:intron 45.0%
TGTCCAACACTAAGCATGAG+AGG + chr5_1:6979668-6979687 None:intergenic 45.0%
! CATGCTTAGTGTTGGACATC+TGG - chr5_1:6979670-6979689 Msa0714340:intron 45.0%
! TACCCGAATAGCTTGATAGC+GGG - chr5_1:6979698-6979717 Msa0714340:intron 45.0%
GTCCAATCTCCAATGGATCT+TGG - chr5_1:6979723-6979742 Msa0714340:intron 45.0%
CAGTTTGGTAGGGGTTGAAT+TGG + chr5_1:6979785-6979804 None:intergenic 45.0%
CAATTCAACCCCTACCAAAC+TGG - chr5_1:6979783-6979802 Msa0714340:intron 45.0%
CTTACAAGCCAGTTTGGTAG+GGG + chr5_1:6979794-6979813 None:intergenic 45.0%
CCTTACAAGCCAGTTTGGTA+GGG + chr5_1:6979795-6979814 None:intergenic 45.0%
ACCTTACAAGCCAGTTTGGT+AGG + chr5_1:6979796-6979815 None:intergenic 45.0%
ATGTCCACCACTCACATTTC+GGG - chr5_1:6979821-6979840 Msa0714340:intron 45.0%
AATAAGGCCCGAAATGTGAG+TGG + chr5_1:6979831-6979850 None:intergenic 45.0%
CAAACGTGGGACTCTTAACT+AGG - chr5_1:6979855-6979874 Msa0714340:intron 45.0%
CCTGAGAAGCAAGATGGAAT+AGG + chr5_1:6979909-6979928 None:intergenic 45.0%
CCTATTCCATCTTGCTTCTC+AGG - chr5_1:6979906-6979925 Msa0714340:intron 45.0%
ATCAAGCCTGAGAAGCAAGA+TGG + chr5_1:6979915-6979934 None:intergenic 45.0%
GGGGTAGGGAACATAAAAAG+AGG + chr5_1:6980063-6980082 None:intergenic 45.0%
CAGTGTAGATGCCAGTAACT+TGG - chr5_1:6980687-6980706 Msa0714340:five_prime_UTR 45.0%
!! AAATTTAATCATTATTAATT+AGG - chr5_1:6980127-6980146 Msa0714340:intron 5.0%
GAACTAGTCACTGTCGAGTG+TGG + chr5_1:6976757-6976776 None:intergenic 50.0%
! TTGTTGGTGAGACATGGTGG+TGG + chr5_1:6976838-6976857 None:intergenic 50.0%
! AGGTTGTTGGTGAGACATGG+TGG + chr5_1:6976841-6976860 None:intergenic 50.0%
! CAGAGGTTGTTGGTGAGACA+TGG + chr5_1:6976844-6976863 None:intergenic 50.0%
! TCTTATGTGGGCTACGGCTA+TGG - chr5_1:6977118-6977137 Msa0714340:CDS 50.0%
! CTTATGTGGGCTACGGCTAT+GGG - chr5_1:6977119-6977138 Msa0714340:CDS 50.0%
! TTATGTGGGCTACGGCTATG+GGG - chr5_1:6977120-6977139 Msa0714340:CDS 50.0%
!! GCAAGGTTAGGTGTTGCTAC+GGG - chr5_1:6977164-6977183 Msa0714340:CDS 50.0%
!! CAAGGTTAGGTGTTGCTACG+GGG - chr5_1:6977165-6977184 Msa0714340:CDS 50.0%
TGTTGCTACGGGGAGACATT+TGG - chr5_1:6977175-6977194 Msa0714340:CDS 50.0%
ATGACAACACCAGCCCAAAG+AGG + chr5_1:6977341-6977360 None:intergenic 50.0%
CCTAAACTGGTAGGGCCATA+TGG + chr5_1:6977828-6977847 None:intergenic 50.0%
CCATATGGCCCTACCAGTTT+AGG - chr5_1:6977825-6977844 Msa0714340:intron 50.0%
TGCTCTTGTTCAATCCAGGC+AGG - chr5_1:6978864-6978883 Msa0714340:intron 50.0%
! GAACGCGGCCTTTCTTTTTG+GGG + chr5_1:6978894-6978913 None:intergenic 50.0%
!! TAGCGCAATGGTGGACTCTA+TGG + chr5_1:6978938-6978957 None:intergenic 50.0%
AAATGCAGGGCAGTACCTTC+AGG - chr5_1:6979047-6979066 Msa0714340:intron 50.0%
! CTTCAGGAGAAGTATGGAGG+CGG - chr5_1:6979063-6979082 Msa0714340:intron 50.0%
! GGTATTGGGTTACTAGCAGC+TGG - chr5_1:6979111-6979130 Msa0714340:intron 50.0%
GCTGGACAATTCATCATGGG+TGG - chr5_1:6979162-6979181 Msa0714340:intron 50.0%
!! GGATGAGGGCGTTGATTACT+CGG - chr5_1:6979211-6979230 Msa0714340:intron 50.0%
!! CAAGATTGGCTCTGTCCTCA+AGG - chr5_1:6979401-6979420 Msa0714340:intron 50.0%
CACCCGCTATCAAGCTATTC+GGG + chr5_1:6979703-6979722 None:intergenic 50.0%
CCACCCGCTATCAAGCTATT+CGG + chr5_1:6979704-6979723 None:intergenic 50.0%
!! CCCTACCAAACTGGCTTGTA+AGG - chr5_1:6979792-6979811 Msa0714340:intron 50.0%
CCTCACCTTACAAGCCAGTT+TGG + chr5_1:6979800-6979819 None:intergenic 50.0%
!! CCAAACTGGCTTGTAAGGTG+AGG - chr5_1:6979797-6979816 Msa0714340:intron 50.0%
GGCCTTGAAACTAGTCCCTT+TGG + chr5_1:6980042-6980061 None:intergenic 50.0%
! ACAGACCATTTCCTGGCTTG+TGG - chr5_1:6980234-6980253 Msa0714340:CDS 50.0%
! GCTCCGTTACGTTTTCACCT+TGG - chr5_1:6980392-6980411 Msa0714340:CDS 50.0%
CGTGGTAGCTACTATCTCTG+TGG + chr5_1:6980467-6980486 None:intergenic 50.0%
GTTGACTGCTGAACTTTGCG+TGG + chr5_1:6980485-6980504 None:intergenic 50.0%
TTGCAATGATTCAGGGGCAG+TGG - chr5_1:6980621-6980640 Msa0714340:CDS 50.0%
AGAAGCCTACGAAGCTGACG+TGG - chr5_1:6976944-6976963 Msa0714340:three_prime_UTR 55.0%
AGAGTCCACGTCAGCTTCGT+AGG + chr5_1:6976952-6976971 None:intergenic 55.0%
TACGAAGCTGACGTGGACTC+TGG - chr5_1:6976951-6976970 Msa0714340:three_prime_UTR 55.0%
CACCAGCCCAAAGAGGAACA+AGG + chr5_1:6977334-6977353 None:intergenic 55.0%
!!! CTTTTTGGGGTCAACCTGCC+TGG + chr5_1:6978881-6978900 None:intergenic 55.0%
GGAGACAACTAGCGCAATGG+TGG + chr5_1:6978947-6978966 None:intergenic 55.0%
CGCCTCCATACTTCTCCTGA+AGG + chr5_1:6979065-6979084 None:intergenic 55.0%
!! CCGAATAGCTTGATAGCGGG+TGG - chr5_1:6979701-6979720 Msa0714340:intron 55.0%
AAGGCCCGAAATGTGAGTGG+TGG + chr5_1:6979828-6979847 None:intergenic 55.0%
AGCAGCCACAAGCCAGGAAA+TGG + chr5_1:6980242-6980261 None:intergenic 55.0%
CACTGCTCCACTCACTTCAG+AGG + chr5_1:6980308-6980327 None:intergenic 55.0%
CAATGATTCAGGGGCAGTGG+TGG - chr5_1:6980624-6980643 Msa0714340:CDS 55.0%
!! GGCCTTGTTCCTCTTTGGGC+TGG - chr5_1:6977329-6977348 Msa0714340:intron 60.0%
GCGGGTGGTCCAATCTCCAA+TGG - chr5_1:6979716-6979735 Msa0714340:intron 60.0%
! TTCCTGGCTTGTGGCTGCTC+TGG - chr5_1:6980243-6980262 Msa0714340:CDS 60.0%
TGTGGCTGCTCAACTCTCCG+TGG + chr5_1:6980449-6980468 None:intergenic 60.0%
CACCAGAGCAGCCACAAGCC+AGG + chr5_1:6980248-6980267 None:intergenic 65.0%
GGCTGCTCAACTCTCCGTGG+TGG + chr5_1:6980446-6980465 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 6976622 6980901 6976622 ID=Msa0714340;Name=Msa0714340
chr5_1 mRNA 6976622 6980901 6976622 ID=Msa0714340-mRNA-1;Parent=Msa0714340;Name=Msa0714340-mRNA-1;_AED=0.02;_eAED=0.02;_QI=221|1|1|1|1|1|4|442|514
chr5_1 exon 6976622 6977285 6976622 ID=Msa0714340-mRNA-1:exon:2908;Parent=Msa0714340-mRNA-1
chr5_1 exon 6978101 6978753 6978101 ID=Msa0714340-mRNA-1:exon:2907;Parent=Msa0714340-mRNA-1
chr5_1 exon 6978884 6979020 6978884 ID=Msa0714340-mRNA-1:exon:2906;Parent=Msa0714340-mRNA-1
chr5_1 exon 6980148 6980901 6980148 ID=Msa0714340-mRNA-1:exon:2905;Parent=Msa0714340-mRNA-1
chr5_1 five_prime_UTR 6980681 6980901 6980681 ID=Msa0714340-mRNA-1:five_prime_utr;Parent=Msa0714340-mRNA-1
chr5_1 CDS 6980148 6980680 6980148 ID=Msa0714340-mRNA-1:cds;Parent=Msa0714340-mRNA-1
chr5_1 CDS 6978884 6979020 6978884 ID=Msa0714340-mRNA-1:cds;Parent=Msa0714340-mRNA-1
chr5_1 CDS 6978101 6978753 6978101 ID=Msa0714340-mRNA-1:cds;Parent=Msa0714340-mRNA-1
chr5_1 CDS 6977064 6977285 6977064 ID=Msa0714340-mRNA-1:cds;Parent=Msa0714340-mRNA-1
chr5_1 three_prime_UTR 6976622 6977063 6976622 ID=Msa0714340-mRNA-1:three_prime_utr;Parent=Msa0714340-mRNA-1
Gene Sequence

>Msa0714340

ATGTCTCACCAACAACCTCTGTTAGAACAACAACAAGAAGAAGGAGAAGAAACCGCTTACGATTCATCTGAAAAGGTTGTCGTTGTTGGAACCGACGAAGAAGAAGCCTACGAAGCTGACGTGGACTCTGGAGTAAGAATTCCACCGTTTTCATGGAAGAAACTATGGTTATTCAGTGGACCAGGTTTTCTGATGAGTATAGCATTTTTGGATCCTGGAAACTTGGAAGGAGATCTTCAATCTGGTGCAATTGCTGGGTATTCGCTGTTATGGCTTCTTATGTGGGCTACGGCTATGGGGCTTTTGATTCAGCTTTTGTCAGCAAGGTTAGGTGTTGCTACGGGGAGACATTTGGCTGAACTTTGTAGAGATGAGTATCCTACTTGGGCAAGGATTGTTCTTTGGTTGATGACTGAAGTTGCTTTGATTGGTTCTGATATTCAAGAGGTTATAGGGAGTGCTATTGCTATTAGGATTTTGAGTAATGGCCTTGTTCCTCTTTGGGCTGGTGTTGTCATTACTGCTTTAGATTGTTTCATTTTCCTCTTTCTTGAGAATTATGGTGTGAGGAAATTGGAAGCATTTTTTGCCGTTCTTATTGCTATAATGGCTCTCTCATTTGCATGGATGTTTGGTGAAGCAAAGCCAGATGGTGTTGATGTTCTTGTTGGTATTTTGGTTCCTAAACTTAGCTCCAGAACTATACAACAAGCTGTTGGAGTTGTTGGTTGCATTATTATGCCTCACAATGTATTCTTGCATTCTGCTCTTGTTCAATCCAGGCAGGTTGACCCCAAAAAGAAAGGCCGCGTTCAAGAAGCTCTCAATTACTACTCCATAGAGTCCACCATTGCGCTAGTTGTCTCCTTTATTATTAATATATTTGTCACAACTGTGTTTGCTAAGGGCTTTTATGGTACTGAAATAGCAAATAGGATCGGTCTTGTAAATGCAGGGCAGTACCTTCAGGAGAAGTATGGAGGCGGAGTATTCCCAATCCTGTATATATGGGGTATTGGGTTACTAGCAGCTGGTCAGAGTAGCACTATTACTGGTACATATGCTGGACAATTCATCATGGGTGGTTTTCTGAATTTGAAGTTGAAAAAATGGATGAGGGCGTTGATTACTCGGAGTTTCGCAATCGTCCCGACTATGATAGTTGCACTTATATTTGATTCTTCAGAGGAATCATTAGATGTTTTGAATGAATGGCTTAATGTTCTTCAGTCAGTGCAAATCCCTTTTGCATTGATTCCCTTGCTTTGTTTGGTTTCAAAGGAACAAATAATGGGCACTTTCAAGATTGGCTCTGTCCTCAAGACCATTTCCTGGCTTGTGGCTGCTCTGGTGATAGTGATAAATGGCTATCTTTTGCTGGAATTCTTTTCCTCTGAAGTGAGTGGAGCAGTGTTCACAACTGTTGTGTGTGTAATAACAGCGGCATACGTTGCATTCATTATTTACCTTATTTCAAGCTCCGTTACGTTTTCACCTTGGCAAAGATTAACTCGATCAAAGACAGTTACCACCACGGAGAGTTGA

Protein sequence

>Msa0714340

MSHQQPLLEQQQEEGEETAYDSSEKVVVVGTDEEEAYEADVDSGVRIPPFSWKKLWLFSGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGRHLAELCRDEYPTWARIVLWLMTEVALIGSDIQEVIGSAIAIRILSNGLVPLWAGVVITALDCFIFLFLENYGVRKLEAFFAVLIAIMALSFAWMFGEAKPDGVDVLVGILVPKLSSRTIQQAVGVVGCIIMPHNVFLHSALVQSRQVDPKKKGRVQEALNYYSIESTIALVVSFIINIFVTTVFAKGFYGTEIANRIGLVNAGQYLQEKYGGGVFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLKLKKWMRALITRSFAIVPTMIVALIFDSSEESLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGTFKIGSVLKTISWLVAALVIVINGYLLLEFFSSEVSGAVFTTVVCVITAAYVAFIIYLISSSVTFSPWQRLTRSKTVTTTES*