AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0984210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0984210 MtrunA17_Chr3g0129631 90.972 432 8 1 1 401 1 432 0.0 809
Msa0984210 MtrunA17_Chr4g0057811 87.731 432 21 2 1 401 1 431 0.0 778
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0984210 AT3G27740.1 67.366 429 100 3 1 390 3 430 0.0 597
Msa0984210 AT3G27740.2 62.312 398 100 7 1 390 3 358 4.51e-172 485
Msa0984210 AT1G25220.1 28.042 189 123 5 213 389 86 273 8.87e-12 65.9
Msa0984210 AT5G57890.1 27.513 189 124 5 213 389 83 270 1.03e-11 65.5
Msa0984210 AT1G25220.2 27.586 203 132 6 201 389 85 286 2.73e-11 64.3
Msa0984210 AT1G24909.1 27.513 189 124 5 213 389 32 219 5.71e-11 62.4
Msa0984210 AT1G25083.1 27.513 189 124 5 213 389 32 219 5.71e-11 62.4
Msa0984210 AT1G25155.1 27.513 189 124 5 213 389 32 219 5.71e-11 62.4

Find 141 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAATACTGGCATCAATTT+TGG 0.168281 6_4:+28042885 Msa0984210:CDS
CGGGAAGATGGCAGCCTTAT+TGG 0.173503 6_4:+28043366 Msa0984210:CDS
TCAGCACAGTGCTTCCTTTC+CGG 0.240008 6_4:+28043011 Msa0984210:CDS
TAATTAGAAGTTTGAGTATC+AGG 0.243391 6_4:+28043039 Msa0984210:CDS
CTTTCTCTCAATGACCTCTT+TGG 0.245128 6_4:+28042354 Msa0984210:CDS
TTCTTAGTAGTTTCTATCTA+TGG 0.264325 6_4:+28045310 Msa0984210:three_prime_UTR
CAATTGCTTGGCCAGGCTTT+AGG 0.266746 6_4:+28044150 Msa0984210:CDS
GCTAAATCATTTGGTGCTTC+AGG 0.275622 6_4:+28042647 Msa0984210:CDS
TTCTCTGTCAGATGTTCTTC+TGG 0.292462 6_4:+28042417 Msa0984210:CDS
GCTAGCCCTTGTACAGAAAA+TGG 0.293625 6_4:-28045383 None:intergenic
ACAACCTACAAGATGAAATT+TGG 0.299468 6_4:+28044177 Msa0984210:CDS
AGAAGAAAGAAACATATTAA+TGG 0.305952 6_4:+28042308 Msa0984210:exon
TGTTAGAAGATGGTTCAATT+TGG 0.310513 6_4:+28042621 Msa0984210:CDS
CTATGGTTTGTAGATGAATA+AGG 0.315269 6_4:+28045327 Msa0984210:three_prime_UTR
CACAACTTTCTTGCAATTGT+GGG 0.322795 6_4:+28045771 Msa0984210:three_prime_UTR
CTGGAGATGTGTGAAGGATT+TGG 0.330063 6_4:+28043179 Msa0984210:CDS
TAGGTAGTTGCATACGATTT+TGG 0.336986 6_4:+28043913 Msa0984210:intron
ATTTGGAAAGCTAAATCATT+TGG 0.341512 6_4:+28042638 Msa0984210:CDS
TGAGGTCCAGGAGATGCTTC+AGG 0.357210 6_4:-28044900 None:intergenic
TGGATATAACTTCAAAGTTT+CGG 0.358550 6_4:-28044013 None:intergenic
GTGACCAAATTTCATCTTGT+AGG 0.368330 6_4:-28044181 None:intergenic
AACTTCAAAGTTTCGGATGC+TGG 0.372898 6_4:-28044006 None:intergenic
AATCCACATATTGGGAATAC+TGG 0.375932 6_4:+28042873 Msa0984210:CDS
TCATCCAATAGGTTTGGATT+GGG 0.377058 6_4:-28045590 None:intergenic
GGTTGCTGCTAACACTGGTT+TGG 0.380442 6_4:+28042237 Msa0984210:five_prime_UTR
GCACAATGTCTTCATCCAAT+AGG 0.380576 6_4:-28045601 None:intergenic
TGTTATGTAGTCATCAAGTT+TGG 0.380667 6_4:-28045695 None:intergenic
AATCCCCAATCCAAACCTAT+TGG 0.381071 6_4:+28045586 Msa0984210:three_prime_UTR
GTTCTATCAATCCATTCATA+TGG 0.384320 6_4:-28043749 None:intergenic
ACTCCTTCAGGCAGTGTGGC+AGG 0.385852 6_4:-28044792 None:intergenic
GGGCAATCACACGTAGATTA+CGG 0.396622 6_4:+28043346 Msa0984210:CDS
TAACACATGCAATTTGCAAT+TGG 0.396704 6_4:+28045713 Msa0984210:three_prime_UTR
CTGATGACAAATCCACATAT+TGG 0.396769 6_4:+28042864 Msa0984210:CDS
ATGTCTTCATCCAATAGGTT+TGG 0.401382 6_4:-28045596 None:intergenic
TGAAAACAACTTCACCAACT+TGG 0.401704 6_4:-28042673 None:intergenic
TCGGATGCTGGCCATGTAGA+TGG 0.404003 6_4:-28043994 None:intergenic
TGAGTAACTTCTACTCCTTC+AGG 0.404731 6_4:-28044804 None:intergenic
TTTACTGTTTCAACGGCATA+AGG 0.405190 6_4:-28044081 None:intergenic
ATTAATGGCAACCAAAGCTT+TGG 0.406201 6_4:+28042323 Msa0984210:exon
TGCATGAATGTATAGGTAAT+GGG 0.406728 6_4:+28042564 Msa0984210:intron
TCACAACTTTCTTGCAATTG+TGG 0.413831 6_4:+28045770 Msa0984210:three_prime_UTR
CAAACTTCTAATTACTAAAC+CGG 0.415332 6_4:-28043030 None:intergenic
GGCAATCACACGTAGATTAC+GGG 0.418709 6_4:+28043347 Msa0984210:CDS
TGGAGATGTGTGAAGGATTT+GGG 0.420135 6_4:+28043180 Msa0984210:CDS
TTCATCCAATAGGTTTGGAT+TGG 0.422242 6_4:-28045591 None:intergenic
TGCTATCCCACCATGCTAGA+AGG 0.425917 6_4:+28045254 Msa0984210:three_prime_UTR
TTGATAGAACAAAGGAAGAA+TGG 0.426377 6_4:+28043762 Msa0984210:CDS
TGATGACAAATCCACATATT+GGG 0.432957 6_4:+28042865 Msa0984210:CDS
AGCGATTAGCTAATAAAGTA+AGG 0.433096 6_4:-28045560 None:intergenic
ATTTATTCAGTACCTCAAAC+TGG 0.433137 6_4:+28043160 Msa0984210:intron
CAGTGCTCAAAACACCAATA+AGG 0.434979 6_4:-28043380 None:intergenic
TTAACTGATCCTAGTTATGC+TGG 0.440990 6_4:+28042831 Msa0984210:CDS
CTTCACACATCTCCAGTTTG+AGG 0.444880 6_4:-28043172 None:intergenic
CCGTGTTGAAATTAGTTCTC+AGG 0.452192 6_4:+28044242 Msa0984210:CDS
GGGACATCAATTGCTTGGCC+AGG 0.456415 6_4:+28044143 Msa0984210:CDS
TGCATGGGACATCAATTGCT+TGG 0.457302 6_4:+28044138 Msa0984210:CDS
CTTAGGCGTCTAGCATCATA+TGG 0.460279 6_4:+28043952 Msa0984210:CDS
AAGGGTGAAGTCCAAAGCTT+TGG 0.463228 6_4:-28042334 None:intergenic
TGTGACCACTTGCAGCTAAA+GGG 0.464808 6_4:-28045752 None:intergenic
CAAAGAGGTCATTGAGAGAA+AGG 0.466089 6_4:-28042353 None:intergenic
GAAACAGTAAAGAATATCAT+TGG 0.466180 6_4:+28044093 Msa0984210:CDS
TTGCTGAAAAGTACACCATC+TGG 0.470969 6_4:-28044033 None:intergenic
GATTTGTCATCAGCACAAAC+TGG 0.471155 6_4:-28042854 None:intergenic
ACATTATCCTTCTTCAATGA+AGG 0.472185 6_4:-28045429 None:intergenic
GCTAGACTTGTGTTAGAAGA+TGG 0.472551 6_4:+28042611 Msa0984210:CDS
TACCACCCTGAAGCATCTCC+TGG 0.473772 6_4:+28044894 Msa0984210:CDS
TGATAGAACAAAGGAAGAAT+GGG 0.475190 6_4:+28043763 Msa0984210:CDS
GAAAACAACTTCACCAACTT+GGG 0.481798 6_4:-28042672 None:intergenic
CGTGCAAGTCACCATATGAA+TGG 0.483758 6_4:+28043738 Msa0984210:CDS
GGAACAGCAGAAGGATCTCC+AGG 0.484183 6_4:-28044060 None:intergenic
CAATGACCTCTTTGGTTCCA+AGG 0.486297 6_4:+28042362 Msa0984210:CDS
ATGCCAGTATTCCCAATATG+TGG 0.486638 6_4:-28042876 None:intergenic
TTGTGACCACTTGCAGCTAA+AGG 0.489830 6_4:-28045753 None:intergenic
AAAGTATGTGATAAAAGCTC+AGG 0.494537 6_4:+28045287 Msa0984210:three_prime_UTR
TAGATGAATAAGGACTTCCT+TGG 0.495299 6_4:+28045337 Msa0984210:three_prime_UTR
GATATTCTTTACTGTTTCAA+CGG 0.495805 6_4:-28044088 None:intergenic
TTGAGCAGGGAAAGCAAGAC+CGG 0.499137 6_4:-28044853 None:intergenic
CTTTATCCTTCTAGCATGGT+GGG 0.501549 6_4:-28045260 None:intergenic
CTCCTTCAGGCAGTGTGGCA+GGG 0.505914 6_4:-28044791 None:intergenic
GAATCAAGCATAATATACTT+AGG 0.506239 6_4:+28043935 Msa0984210:CDS
AGAGGTGTGTGGCGGCGCCT+TGG 0.508323 6_4:-28042379 None:intergenic
ACAACTTTCTTGCAATTGTG+GGG 0.513003 6_4:+28045772 Msa0984210:three_prime_UTR
CTCGTAGCCTTCATTGAAGA+AGG 0.515567 6_4:+28045422 Msa0984210:three_prime_UTR
CCAGTTCGAAGGTTACGAAC+AGG 0.516140 6_4:-28044219 None:intergenic
CTCAATGACAGTAGTTGTGC+CGG 0.517106 6_4:+28044834 Msa0984210:CDS
ACAAACTGGCCAGCATAACT+AGG 0.518582 6_4:-28042840 None:intergenic
CTTAACTGAAAGGAATGTCA+TGG 0.522571 6_4:+28043209 Msa0984210:CDS
TTGTCAGAATCATGAGGTCC+AGG 0.525671 6_4:-28044912 None:intergenic
GAGGTCCAGGAGATGCTTCA+GGG 0.527220 6_4:-28044899 None:intergenic
AGTATCTCTAGGCCCTTCAC+TGG 0.527684 6_4:-28043795 None:intergenic
CAACTTTCTTGCAATTGTGG+GGG 0.530199 6_4:+28045773 Msa0984210:three_prime_UTR
CCTGTTCGTAACCTTCGAAC+TGG 0.534549 6_4:+28044219 Msa0984210:CDS
CATCCAATAGGTTTGGATTG+GGG 0.536858 6_4:-28045589 None:intergenic
TGGGCGATTACTTAACTGAA+AGG 0.537172 6_4:+28043199 Msa0984210:CDS
CTTACATGGAAAGTATCTCT+AGG 0.537477 6_4:-28043806 None:intergenic
AATACTTTATCCTTCTAGCA+TGG 0.538523 6_4:-28045264 None:intergenic
TAGGTAATGGGGAAAGGCCA+TGG 0.546071 6_4:+28042576 Msa0984210:intron
GGTGCTTCAGGAACCCAAGT+TGG 0.546817 6_4:+28042659 Msa0984210:CDS
CAACAGATGATGTTGATACA+AGG 0.549921 6_4:+28043325 Msa0984210:intron
ACACTGATTGCAGTTGGTGT+AGG 0.551642 6_4:-28045212 None:intergenic
ACACGTAGATTACGGGAAGA+TGG 0.551699 6_4:+28043354 Msa0984210:CDS
AAAGAGGTCATTGAGAGAAA+GGG 0.551745 6_4:-28042352 None:intergenic
GGCTAGCAGCCGATTGGCAT+AGG 0.554150 6_4:+28045399 Msa0984210:three_prime_UTR
TACAAGGGCTAGCAGCCGAT+TGG 0.556106 6_4:+28045393 Msa0984210:three_prime_UTR
TTGCTTGGCCAGGCTTTAGG+AGG 0.558881 6_4:+28044153 Msa0984210:CDS
AATGTATAGGTAATGGGGAA+AGG 0.560392 6_4:+28042570 Msa0984210:intron
TCACTGTTGTGCCATCTACA+TGG 0.561762 6_4:+28043983 Msa0984210:CDS
GAACAGGATGATTTCCTCCA+TGG 0.563497 6_4:-28044203 None:intergenic
ACATAGGTTGCTGCTAACAC+TGG 0.565602 6_4:+28042232 Msa0984210:five_prime_UTR
TTTCAACACGGCCAGTTCGA+AGG 0.571733 6_4:-28044230 None:intergenic
GCATGAATGTATAGGTAATG+GGG 0.572178 6_4:+28042565 Msa0984210:intron
CAGGGTCAACTGCATAGTTG+TGG 0.573224 6_4:-28044773 None:intergenic
AGGTTGTACCTCCTAAAGCC+TGG 0.573954 6_4:-28044161 None:intergenic
AGTAAAGAATATCATTGGAA+AGG 0.576011 6_4:+28044098 Msa0984210:CDS
GGCTACGAGCCTATGCCAAT+CGG 0.576216 6_4:-28045408 None:intergenic
GCGATTAGCTAATAAAGTAA+GGG 0.585873 6_4:-28045559 None:intergenic
ATTATTACACTGATTGCAGT+TGG 0.586719 6_4:-28045218 None:intergenic
GACCCTGCCACACTGCCTGA+AGG 0.593729 6_4:+28044789 Msa0984210:CDS
GAAAATCTTGATCAACTCCA+AGG 0.593981 6_4:-28045354 None:intergenic
TTAACTGAAAGGAATGTCAT+GGG 0.597258 6_4:+28043210 Msa0984210:CDS
TGGGAGTTTAGCTCCAGTGA+AGG 0.599112 6_4:+28043782 Msa0984210:CDS
CATATCCCTTTAGCTGCAAG+TGG 0.605945 6_4:+28045747 Msa0984210:three_prime_UTR
ACGGCATAAGGAACAGCAGA+AGG 0.606024 6_4:-28044069 None:intergenic
ACTTTATCCTTCTAGCATGG+TGG 0.607923 6_4:-28045261 None:intergenic
CTCAAACTGGAGATGTGTGA+AGG 0.613677 6_4:+28043173 Msa0984210:CDS
ACTTTGAAGTTATATCCAGA+TGG 0.617701 6_4:+28044018 Msa0984210:CDS
AAGATGAAATTTGGTCACCA+TGG 0.620210 6_4:+28044186 Msa0984210:CDS
ATGAAATTTGGTCACCATGG+AGG 0.624582 6_4:+28044189 Msa0984210:CDS
TTCTAATTACTAAACCGGAA+AGG 0.626092 6_4:-28043025 None:intergenic
TGAATGGATTGATAGAACAA+AGG 0.627214 6_4:+28043754 Msa0984210:CDS
CCTAGGTGAAGAGAAAACAT+AGG 0.629266 6_4:+28042216 Msa0984210:five_prime_UTR
GGGAGTTTAGCTCCAGTGAA+GGG 0.629622 6_4:+28043783 Msa0984210:CDS
AACAGATGATGTTGATACAA+GGG 0.640054 6_4:+28043326 Msa0984210:intron
GGACCTCATGATTCTGACAA+CGG 0.640994 6_4:+28044915 Msa0984210:CDS
GCGGCGCCTTGGAACCAAAG+AGG 0.643056 6_4:-28042368 None:intergenic
TTCTACTCCTTCAGGCAGTG+TGG 0.658466 6_4:-28044796 None:intergenic
CCTTTCAACTACAAGCTGCA+CGG 0.674886 6_4:-28045806 None:intergenic
TCATTGTCTGACAGATGACG+AGG 0.685177 6_4:+28042986 Msa0984210:intron
TCACCGTTGTCAGAATCATG+AGG 0.688390 6_4:-28044918 None:intergenic
CCTGAGAACTAATTTCAACA+CGG 0.701914 6_4:-28044242 None:intergenic
GTCCAGGAGATGCTTCAGGG+TGG 0.722700 6_4:-28044896 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCATAATTATTTGT+TGG + chr6_4:28042458-28042477 Msa0984210:intron 10.0%
!! ATTAATTGATACATATAAAT+TGG + chr6_4:28044745-28044764 Msa0984210:intron 10.0%
!! ATATCACAAGATTTATAATT+TGG - chr6_4:28042720-28042739 None:intergenic 15.0%
!! AATAAATAAAAAATTGCAAC+TGG + chr6_4:28044493-28044512 Msa0984210:intron 15.0%
!!! ATAGCATAAAATTTTGAATA+TGG + chr6_4:28044583-28044602 Msa0984210:intron 15.0%
!! TTTAAACAAACCATAAATAT+AGG - chr6_4:28044645-28044664 None:intergenic 15.0%
!! TGATAATAAATATAACTGTT+TGG + chr6_4:28044977-28044996 Msa0984210:intron 15.0%
!!! AAATTTTTTAAAGATTGTGA+AGG - chr6_4:28045003-28045022 None:intergenic 15.0%
!! CAAATTGAAAATAAAAACCT+AGG + chr6_4:28042199-28042218 Msa0984210:five_prime_UTR 20.0%
!! AGAAGAAAGAAACATATTAA+TGG + chr6_4:28042308-28042327 Msa0984210:exon 20.0%
!!! AAAAAGACAACATTTTTCAT+GGG - chr6_4:28042491-28042510 None:intergenic 20.0%
!!! AAAAAAGACAACATTTTTCA+TGG - chr6_4:28042492-28042511 None:intergenic 20.0%
!!! AAATGTTGTCTTTTTTGATT+TGG + chr6_4:28042496-28042515 Msa0984210:intron 20.0%
!!! GATATTCTTTTGTTGTTTTA+TGG + chr6_4:28042735-28042754 Msa0984210:intron 20.0%
!! TTAAGTAATTACCATGATTA+CGG - chr6_4:28044311-28044330 None:intergenic 20.0%
!! TAAATCCATTTGAATTCATT+TGG + chr6_4:28044328-28044347 Msa0984210:intron 20.0%
!!! TATATTTTTTGCTTCATAGA+AGG + chr6_4:28044394-28044413 Msa0984210:intron 20.0%
!!! ATATTTTTTGCTTCATAGAA+GGG + chr6_4:28044395-28044414 Msa0984210:intron 20.0%
!!! GTATTTTATTCTTTTTGTCA+TGG + chr6_4:28044711-28044730 Msa0984210:intron 20.0%
!! AAAAATTTATATTCAAGAGC+AGG + chr6_4:28045015-28045034 Msa0984210:intron 20.0%
!!! TATTTTTACAACTTGAAATG+TGG + chr6_4:28045494-28045513 Msa0984210:three_prime_UTR 20.0%
!!! ATTTTTACAACTTGAAATGT+GGG + chr6_4:28045495-28045514 Msa0984210:three_prime_UTR 20.0%
!! TTCATTCAAGTAAAAAATGT+TGG - chr6_4:28045629-28045648 None:intergenic 20.0%
!!! CTTGAATGAAATTTTTGTTA+TGG + chr6_4:28045639-28045658 Msa0984210:three_prime_UTR 20.0%
! AAATGAATGCATGAATGTAT+AGG + chr6_4:28042557-28042576 Msa0984210:intron 25.0%
! ATTTGGAAAGCTAAATCATT+TGG + chr6_4:28042638-28042657 Msa0984210:CDS 25.0%
!!! TTTTCAATACATCATTGACT+GGG + chr6_4:28042690-28042709 Msa0984210:CDS 25.0%
! AATGAAACAGAAACTCAATT+AGG - chr6_4:28042772-28042791 None:intergenic 25.0%
! TTAAAATTTCTTGATACCTG+AGG - chr6_4:28042815-28042834 None:intergenic 25.0%
! CAAACTTCTAATTACTAAAC+CGG - chr6_4:28043033-28043052 None:intergenic 25.0%
! TAATTAGAAGTTTGAGTATC+AGG + chr6_4:28043039-28043058 Msa0984210:CDS 25.0%
! TTACCCAAAATTCAACAAAA+GGG - chr6_4:28043860-28043879 None:intergenic 25.0%
! GAATCAAGCATAATATACTT+AGG + chr6_4:28043935-28043954 Msa0984210:CDS 25.0%
! TGGATATAACTTCAAAGTTT+CGG - chr6_4:28044016-28044035 None:intergenic 25.0%
! GATATTCTTTACTGTTTCAA+CGG - chr6_4:28044091-28044110 None:intergenic 25.0%
! GAAACAGTAAAGAATATCAT+TGG + chr6_4:28044093-28044112 Msa0984210:CDS 25.0%
! AGTAAAGAATATCATTGGAA+AGG + chr6_4:28044098-28044117 Msa0984210:CDS 25.0%
!!! TTTTATTTATTTTTGCCACG+AGG - chr6_4:28044484-28044503 None:intergenic 25.0%
!!! AAATTTTATGCTATTTCCAC+AGG - chr6_4:28044577-28044596 None:intergenic 25.0%
! TATGTGTAGTCCTATATTTA+TGG + chr6_4:28044632-28044651 Msa0984210:intron 25.0%
!! CTTGATAACATGTAATGATA+TGG - chr6_4:28044672-28044691 None:intergenic 25.0%
! ACGAAATTGTAAAAGCAAAT+TGG - chr6_4:28045073-28045092 None:intergenic 25.0%
! TTCTTAGTAGTTTCTATCTA+TGG + chr6_4:28045310-28045329 Msa0984210:three_prime_UTR 25.0%
!! TTTTTACAACTTGAAATGTG+GGG + chr6_4:28045496-28045515 Msa0984210:three_prime_UTR 25.0%
!!! TTTTTGTTATGGAAGAATGA+AGG + chr6_4:28045650-28045669 Msa0984210:three_prime_UTR 25.0%
!!! TTTTTTGATTTGGTGTTGCT+GGG + chr6_4:28042506-28042525 Msa0984210:intron 30.0%
ATGCATGAATGTATAGGTAA+TGG + chr6_4:28042563-28042582 Msa0984210:intron 30.0%
TGCATGAATGTATAGGTAAT+GGG + chr6_4:28042564-28042583 Msa0984210:intron 30.0%
TGTTAGAAGATGGTTCAATT+TGG + chr6_4:28042621-28042640 Msa0984210:CDS 30.0%
! GTTTTCAATACATCATTGAC+TGG + chr6_4:28042689-28042708 Msa0984210:CDS 30.0%
TGATGACAAATCCACATATT+GGG + chr6_4:28042865-28042884 Msa0984210:CDS 30.0%
!! TCAAGAGATGGTTTTTAAAG+TGG - chr6_4:28042965-28042984 None:intergenic 30.0%
TTCTAATTACTAAACCGGAA+AGG - chr6_4:28043028-28043047 None:intergenic 30.0%
AGAAAGTAAAGCTCAATCAA+CGG - chr6_4:28043093-28043112 None:intergenic 30.0%
ATTTATTCAGTACCTCAAAC+TGG + chr6_4:28043160-28043179 Msa0984210:intron 30.0%
TTAACTGAAAGGAATGTCAT+GGG + chr6_4:28043210-28043229 Msa0984210:CDS 30.0%
AACAGATGATGTTGATACAA+GGG + chr6_4:28043326-28043345 Msa0984210:intron 30.0%
TACTTCAGATGTCTAAATCA+TGG + chr6_4:28043427-28043446 Msa0984210:intron 30.0%
ACTTCAGATGTCTAAATCAT+GGG + chr6_4:28043428-28043447 Msa0984210:intron 30.0%
TCTAAATCATGGGATATTGT+TGG + chr6_4:28043438-28043457 Msa0984210:intron 30.0%
! TTGTTGGTAAGAATGACTAT+TGG + chr6_4:28043454-28043473 Msa0984210:intron 30.0%
GTTCTATCAATCCATTCATA+TGG - chr6_4:28043752-28043771 None:intergenic 30.0%
!! TGAATGGATTGATAGAACAA+AGG + chr6_4:28043754-28043773 Msa0984210:CDS 30.0%
TTGATAGAACAAAGGAAGAA+TGG + chr6_4:28043762-28043781 Msa0984210:CDS 30.0%
TGATAGAACAAAGGAAGAAT+GGG + chr6_4:28043763-28043782 Msa0984210:CDS 30.0%
TCCATGTAAGTTTATACAGT+AGG + chr6_4:28043819-28043838 Msa0984210:intron 30.0%
! ACTCCCTTTTGTTGAATTTT+GGG + chr6_4:28043854-28043873 Msa0984210:intron 30.0%
CTTACCCAAAATTCAACAAA+AGG - chr6_4:28043861-28043880 None:intergenic 30.0%
!! GTACTGATGAATGATCTTTT+AGG + chr6_4:28043894-28043913 Msa0984210:intron 30.0%
!! ACTTTGAAGTTATATCCAGA+TGG + chr6_4:28044018-28044037 Msa0984210:CDS 30.0%
ACAACCTACAAGATGAAATT+TGG + chr6_4:28044177-28044196 Msa0984210:CDS 30.0%
! TTGAAATTAGTTCTCAGGTA+TGG + chr6_4:28044247-28044266 Msa0984210:intron 30.0%
TCAGACCAAATGAATTCAAA+TGG - chr6_4:28044336-28044355 None:intergenic 30.0%
! TTCTTTTCTTCTCAAGACAA+GGG - chr6_4:28044433-28044452 None:intergenic 30.0%
! ATTCTTTTCTTCTCAAGACA+AGG - chr6_4:28044434-28044453 None:intergenic 30.0%
! ATTCTTTTTGTCATGGTCTT+TGG + chr6_4:28044718-28044737 Msa0984210:intron 30.0%
GCTCTTTATCAAAAGAAGTT+TGG + chr6_4:28044952-28044971 Msa0984210:intron 30.0%
GTCTTGTAGGATATAATCAT+TGG + chr6_4:28045045-28045064 Msa0984210:intron 30.0%
ATCACAACAGTGGTTATTAT+TGG - chr6_4:28045120-28045139 None:intergenic 30.0%
ATTATCAACAATCACAACAG+TGG - chr6_4:28045130-28045149 None:intergenic 30.0%
!!! TTGTTGATAATGCAGCTTTT+CGG + chr6_4:28045139-28045158 Msa0984210:intron 30.0%
! ATTATTACACTGATTGCAGT+TGG - chr6_4:28045221-28045240 None:intergenic 30.0%
AATACTTTATCCTTCTAGCA+TGG - chr6_4:28045267-28045286 None:intergenic 30.0%
AAAGTATGTGATAAAAGCTC+AGG + chr6_4:28045287-28045306 Msa0984210:three_prime_UTR 30.0%
! CTATGGTTTGTAGATGAATA+AGG + chr6_4:28045327-28045346 Msa0984210:three_prime_UTR 30.0%
ACATTATCCTTCTTCAATGA+AGG - chr6_4:28045432-28045451 None:intergenic 30.0%
! GCGATTAGCTAATAAAGTAA+GGG - chr6_4:28045562-28045581 None:intergenic 30.0%
! AGCGATTAGCTAATAAAGTA+AGG - chr6_4:28045563-28045582 None:intergenic 30.0%
TGTTATGTAGTCATCAAGTT+TGG - chr6_4:28045698-28045717 None:intergenic 30.0%
TAACACATGCAATTTGCAAT+TGG + chr6_4:28045713-28045732 Msa0984210:three_prime_UTR 30.0%
ATTAATGGCAACCAAAGCTT+TGG + chr6_4:28042323-28042342 Msa0984210:exon 35.0%
AAAGAGGTCATTGAGAGAAA+GGG - chr6_4:28042355-28042374 None:intergenic 35.0%
!!! CTTTTTTGATTTGGTGTTGC+TGG + chr6_4:28042505-28042524 Msa0984210:intron 35.0%
GCATGAATGTATAGGTAATG+GGG + chr6_4:28042565-28042584 Msa0984210:intron 35.0%
!! AATGTATAGGTAATGGGGAA+AGG + chr6_4:28042570-28042589 Msa0984210:intron 35.0%
! CTAGCATCTGAATTTTTCCA+TGG - chr6_4:28042596-28042615 None:intergenic 35.0%
GAAAACAACTTCACCAACTT+GGG - chr6_4:28042675-28042694 None:intergenic 35.0%
TGAAAACAACTTCACCAACT+TGG - chr6_4:28042676-28042695 None:intergenic 35.0%
ATTTCTTGATACCTGAGGAA+TGG - chr6_4:28042810-28042829 None:intergenic 35.0%
TTAACTGATCCTAGTTATGC+TGG + chr6_4:28042831-28042850 Msa0984210:CDS 35.0%
CTGATGACAAATCCACATAT+TGG + chr6_4:28042864-28042883 Msa0984210:CDS 35.0%
AATCCACATATTGGGAATAC+TGG + chr6_4:28042873-28042892 Msa0984210:CDS 35.0%
!!! TTTTAAAGTGGACTAGCACA+AGG - chr6_4:28042953-28042972 None:intergenic 35.0%
TCAGACAATGAATCAAGAGA+TGG - chr6_4:28042977-28042996 None:intergenic 35.0%
GCTCAATCAACGGAAAATAT+TGG - chr6_4:28043083-28043102 None:intergenic 35.0%
GAAGAGACAAAGAGTAAGTA+TGG - chr6_4:28043121-28043140 None:intergenic 35.0%
CTTAACTGAAAGGAATGTCA+TGG + chr6_4:28043209-28043228 Msa0984210:CDS 35.0%
AGAACGTTACATGTAAACTC+TGG + chr6_4:28043268-28043287 Msa0984210:intron 35.0%
CAACAGATGATGTTGATACA+AGG + chr6_4:28043325-28043344 Msa0984210:intron 35.0%
! AAGTAATTCCTCGTCTGTTT+TGG - chr6_4:28043412-28043431 None:intergenic 35.0%
TTGGTAAGAATGACTATTGG+AGG + chr6_4:28043457-28043476 Msa0984210:intron 35.0%
AATTCAGTGTTGTCAAACTG+CGG + chr6_4:28043508-28043527 Msa0984210:intron 35.0%
! GGCTTATGTTTCTTATTTGC+AGG + chr6_4:28043692-28043711 Msa0984210:intron 35.0%
!! GCAGGTATTGATCTAATAAG+TGG + chr6_4:28043710-28043729 Msa0984210:intron 35.0%
!! CTTACATGGAAAGTATCTCT+AGG - chr6_4:28043809-28043828 None:intergenic 35.0%
GCCTACTGTATAAACTTACA+TGG - chr6_4:28043823-28043842 None:intergenic 35.0%
AAGTTTATACAGTAGGCTGT+TGG + chr6_4:28043826-28043845 Msa0984210:intron 35.0%
AATTCAACAAAAGGGAGTCA+GGG - chr6_4:28043852-28043871 None:intergenic 35.0%
AAATTCAACAAAAGGGAGTC+AGG - chr6_4:28043853-28043872 None:intergenic 35.0%
! GACTCCCTTTTGTTGAATTT+TGG + chr6_4:28043853-28043872 Msa0984210:intron 35.0%
! TAGGTAGTTGCATACGATTT+TGG + chr6_4:28043913-28043932 Msa0984210:intron 35.0%
TTTACTGTTTCAACGGCATA+AGG - chr6_4:28044084-28044103 None:intergenic 35.0%
!!! CCTGTTTTTGGAATTTGCAT+GGG + chr6_4:28044123-28044142 Msa0984210:CDS 35.0%
GTGACCAAATTTCATCTTGT+AGG - chr6_4:28044184-28044203 None:intergenic 35.0%
AAGATGAAATTTGGTCACCA+TGG + chr6_4:28044186-28044205 Msa0984210:CDS 35.0%
CCTGAGAACTAATTTCAACA+CGG - chr6_4:28044245-28044264 None:intergenic 35.0%
TCATCATTTCACCGTAATCA+TGG + chr6_4:28044297-28044316 Msa0984210:intron 35.0%
TGAATTCATTTGGTCTGATG+AGG + chr6_4:28044338-28044357 Msa0984210:intron 35.0%
GAATTCATTTGGTCTGATGA+GGG + chr6_4:28044339-28044358 Msa0984210:intron 35.0%
!!! TGTTGATAATGCAGCTTTTC+GGG + chr6_4:28045140-28045159 Msa0984210:intron 35.0%
!! AGTTGGTGTAGGTTTTCATT+CGG - chr6_4:28045204-28045223 None:intergenic 35.0%
TAGATGAATAAGGACTTCCT+TGG + chr6_4:28045337-28045356 Msa0984210:three_prime_UTR 35.0%
GAAAATCTTGATCAACTCCA+AGG - chr6_4:28045357-28045376 None:intergenic 35.0%
! TTGTGTCCATTTTCTGTACA+AGG + chr6_4:28045377-28045396 Msa0984210:three_prime_UTR 35.0%
! TGTGTCCATTTTCTGTACAA+GGG + chr6_4:28045378-28045397 Msa0984210:three_prime_UTR 35.0%
TAAAAACACAGTTCTCTTCG+CGG - chr6_4:28045468-28045487 None:intergenic 35.0%
TCATCCAATAGGTTTGGATT+GGG - chr6_4:28045593-28045612 None:intergenic 35.0%
TTCATCCAATAGGTTTGGAT+TGG - chr6_4:28045594-28045613 None:intergenic 35.0%
ATGTCTTCATCCAATAGGTT+TGG - chr6_4:28045599-28045618 None:intergenic 35.0%
TCACAACTTTCTTGCAATTG+TGG + chr6_4:28045770-28045789 Msa0984210:three_prime_UTR 35.0%
CACAACTTTCTTGCAATTGT+GGG + chr6_4:28045771-28045790 Msa0984210:three_prime_UTR 35.0%
ACAACTTTCTTGCAATTGTG+GGG + chr6_4:28045772-28045791 Msa0984210:three_prime_UTR 35.0%
! CCTATGTTTTCTCTTCACCT+AGG - chr6_4:28042219-28042238 None:intergenic 40.0%
CCTAGGTGAAGAGAAAACAT+AGG + chr6_4:28042216-28042235 Msa0984210:five_prime_UTR 40.0%
CAAAGAGGTCATTGAGAGAA+AGG - chr6_4:28042356-28042375 None:intergenic 40.0%
CTTTCTCTCAATGACCTCTT+TGG + chr6_4:28042354-28042373 Msa0984210:CDS 40.0%
! GAAGACAGAAACTTTTGCAG+AGG - chr6_4:28042400-28042419 None:intergenic 40.0%
TTCTCTGTCAGATGTTCTTC+TGG + chr6_4:28042417-28042436 Msa0984210:CDS 40.0%
GCTAGACTTGTGTTAGAAGA+TGG + chr6_4:28042611-28042630 Msa0984210:CDS 40.0%
!! GCTAAATCATTTGGTGCTTC+AGG + chr6_4:28042647-28042666 Msa0984210:CDS 40.0%
GATTTGTCATCAGCACAAAC+TGG - chr6_4:28042857-28042876 None:intergenic 40.0%
ATGCCAGTATTCCCAATATG+TGG - chr6_4:28042879-28042898 None:intergenic 40.0%
! GGGAATACTGGCATCAATTT+TGG + chr6_4:28042885-28042904 Msa0984210:CDS 40.0%
AATATCCATCGCAAAGAGAC+AGG - chr6_4:28043143-28043162 None:intergenic 40.0%
TGGAGATGTGTGAAGGATTT+GGG + chr6_4:28043180-28043199 Msa0984210:CDS 40.0%
TGGGCGATTACTTAACTGAA+AGG + chr6_4:28043199-28043218 Msa0984210:CDS 40.0%
CAGTGCTCAAAACACCAATA+AGG - chr6_4:28043383-28043402 None:intergenic 40.0%
TGACAATTCCAAAACAGACG+AGG + chr6_4:28043401-28043420 Msa0984210:intron 40.0%
ACAACTCTGCTGGAATTACA+TGG + chr6_4:28043671-28043690 Msa0984210:intron 40.0%
AACTTCAAAGTTTCGGATGC+TGG - chr6_4:28044009-28044028 None:intergenic 40.0%
! TTGCTGAAAAGTACACCATC+TGG - chr6_4:28044036-28044055 None:intergenic 40.0%
! GATGGTGTACTTTTCAGCAA+TGG + chr6_4:28044036-28044055 Msa0984210:CDS 40.0%
!!! ATTGGAAAGGTGCCTGTTTT+TGG + chr6_4:28044111-28044130 Msa0984210:CDS 40.0%
!!! GCCTGTTTTTGGAATTTGCA+TGG + chr6_4:28044122-28044141 Msa0984210:CDS 40.0%
CCCATGCAAATTCCAAAAAC+AGG - chr6_4:28044126-28044145 None:intergenic 40.0%
ATGAAATTTGGTCACCATGG+AGG + chr6_4:28044189-28044208 Msa0984210:CDS 40.0%
! CCGTGTTGAAATTAGTTCTC+AGG + chr6_4:28044242-28044261 Msa0984210:CDS 40.0%
! TGTCCATGAGTTGACACAAT+GGG - chr6_4:28044546-28044565 None:intergenic 40.0%
! ATGTCCATGAGTTGACACAA+TGG - chr6_4:28044547-28044566 None:intergenic 40.0%
CATGGACATTATTAGACCTG+TGG + chr6_4:28044558-28044577 Msa0984210:intron 40.0%
TGAGTAACTTCTACTCCTTC+AGG - chr6_4:28044807-28044826 None:intergenic 40.0%
! GAGACACAATCTTTTGAGCA+GGG - chr6_4:28044869-28044888 None:intergenic 40.0%
! AGAGACACAATCTTTTGAGC+AGG - chr6_4:28044870-28044889 None:intergenic 40.0%
AGCAGGATTATGTGTCTTGT+AGG + chr6_4:28045032-28045051 Msa0984210:intron 40.0%
TTCGTTCAGCGACTTGAATA+TGG + chr6_4:28045088-28045107 Msa0984210:intron 40.0%
!!! GTAGGTTTTCATTCGGTGTT+TGG - chr6_4:28045197-28045216 None:intergenic 40.0%
CTTTATCCTTCTAGCATGGT+GGG - chr6_4:28045263-28045282 None:intergenic 40.0%
ACTTTATCCTTCTAGCATGG+TGG - chr6_4:28045264-28045283 None:intergenic 40.0%
AATCCCCAATCCAAACCTAT+TGG + chr6_4:28045586-28045605 Msa0984210:three_prime_UTR 40.0%
CATCCAATAGGTTTGGATTG+GGG - chr6_4:28045592-28045611 None:intergenic 40.0%
GCACAATGTCTTCATCCAAT+AGG - chr6_4:28045604-28045623 None:intergenic 40.0%
CAACTTTCTTGCAATTGTGG+GGG + chr6_4:28045773-28045792 Msa0984210:three_prime_UTR 40.0%
ACATAGGTTGCTGCTAACAC+TGG + chr6_4:28042232-28042251 Msa0984210:five_prime_UTR 45.0%
AAGGGTGAAGTCCAAAGCTT+TGG - chr6_4:28042337-28042356 None:intergenic 45.0%
! CAATGACCTCTTTGGTTCCA+AGG + chr6_4:28042362-28042381 Msa0984210:CDS 45.0%
!! GAAACTTTTGCAGAGGTGTG+TGG - chr6_4:28042393-28042412 None:intergenic 45.0%
ATGTGTGTGTTCCATTCCTC+AGG + chr6_4:28042796-28042815 Msa0984210:intron 45.0%
ACAAACTGGCCAGCATAACT+AGG - chr6_4:28042843-28042862 None:intergenic 45.0%
TCATTGTCTGACAGATGACG+AGG + chr6_4:28042986-28043005 Msa0984210:intron 45.0%
CTTCACACATCTCCAGTTTG+AGG - chr6_4:28043175-28043194 None:intergenic 45.0%
CTCAAACTGGAGATGTGTGA+AGG + chr6_4:28043173-28043192 Msa0984210:CDS 45.0%
CTGGAGATGTGTGAAGGATT+TGG + chr6_4:28043179-28043198 Msa0984210:CDS 45.0%
GGGCAATCACACGTAGATTA+CGG + chr6_4:28043346-28043365 Msa0984210:CDS 45.0%
GGCAATCACACGTAGATTAC+GGG + chr6_4:28043347-28043366 Msa0984210:CDS 45.0%
ACACGTAGATTACGGGAAGA+TGG + chr6_4:28043354-28043373 Msa0984210:CDS 45.0%
TCTGTGATTGACAACTCTGC+TGG + chr6_4:28043661-28043680 Msa0984210:intron 45.0%
CGTGCAAGTCACCATATGAA+TGG + chr6_4:28043738-28043757 Msa0984210:CDS 45.0%
CTTAGGCGTCTAGCATCATA+TGG + chr6_4:28043952-28043971 Msa0984210:CDS 45.0%
TCACTGTTGTGCCATCTACA+TGG + chr6_4:28043983-28044002 Msa0984210:CDS 45.0%
! GTACTTTTCAGCAATGGTCC+TGG + chr6_4:28044042-28044061 Msa0984210:CDS 45.0%
TGCATGGGACATCAATTGCT+TGG + chr6_4:28044138-28044157 Msa0984210:CDS 45.0%
GAACAGGATGATTTCCTCCA+TGG - chr6_4:28044206-28044225 None:intergenic 45.0%
TTCATTTGGTCTGATGAGGG+AGG + chr6_4:28044342-28044361 Msa0984210:intron 45.0%
TCATTTGGTCTGATGAGGGA+GGG + chr6_4:28044343-28044362 Msa0984210:intron 45.0%
TTCATAGAAGGGTCAGAACC+TGG + chr6_4:28044406-28044425 Msa0984210:intron 45.0%
GGCACTATCATAGTGAGTTC+TGG - chr6_4:28044463-28044482 None:intergenic 45.0%
! TCCATGAGTTGACACAATGG+GGG - chr6_4:28044544-28044563 None:intergenic 45.0%
! GTCCATGAGTTGACACAATG+GGG - chr6_4:28044545-28044564 None:intergenic 45.0%
CTCAATGACAGTAGTTGTGC+CGG + chr6_4:28044834-28044853 Msa0984210:CDS 45.0%
TTGTCAGAATCATGAGGTCC+AGG - chr6_4:28044915-28044934 None:intergenic 45.0%
GGACCTCATGATTCTGACAA+CGG + chr6_4:28044915-28044934 Msa0984210:CDS 45.0%
TCACCGTTGTCAGAATCATG+AGG - chr6_4:28044921-28044940 None:intergenic 45.0%
! ACACTGATTGCAGTTGGTGT+AGG - chr6_4:28045215-28045234 None:intergenic 45.0%
GCTAGCCCTTGTACAGAAAA+TGG - chr6_4:28045386-28045405 None:intergenic 45.0%
CTCGTAGCCTTCATTGAAGA+AGG + chr6_4:28045422-28045441 Msa0984210:three_prime_UTR 45.0%
CATATCCCTTTAGCTGCAAG+TGG + chr6_4:28045747-28045766 Msa0984210:three_prime_UTR 45.0%
TGTGACCACTTGCAGCTAAA+GGG - chr6_4:28045755-28045774 None:intergenic 45.0%
TTGTGACCACTTGCAGCTAA+AGG - chr6_4:28045756-28045775 None:intergenic 45.0%
TTTCTTGCAATTGTGGGGGT+TGG + chr6_4:28045777-28045796 Msa0984210:three_prime_UTR 45.0%
! GGTTGCTGCTAACACTGGTT+TGG + chr6_4:28042237-28042256 Msa0984210:five_prime_UTR 50.0%
!! ACTTTTGCAGAGGTGTGTGG+CGG - chr6_4:28042390-28042409 None:intergenic 50.0%
!! TAGGTAATGGGGAAAGGCCA+TGG + chr6_4:28042576-28042595 Msa0984210:intron 50.0%
TCAGCACAGTGCTTCCTTTC+CGG + chr6_4:28043011-28043030 Msa0984210:CDS 50.0%
CTCTTCCTGTCTCTTTGCGA+TGG + chr6_4:28043135-28043154 Msa0984210:intron 50.0%
! TGGGAGTTTAGCTCCAGTGA+AGG + chr6_4:28043782-28043801 Msa0984210:CDS 50.0%
! GGGAGTTTAGCTCCAGTGAA+GGG + chr6_4:28043783-28043802 Msa0984210:CDS 50.0%
AGTATCTCTAGGCCCTTCAC+TGG - chr6_4:28043798-28043817 None:intergenic 50.0%
ACGGCATAAGGAACAGCAGA+AGG - chr6_4:28044072-28044091 None:intergenic 50.0%
CAATTGCTTGGCCAGGCTTT+AGG + chr6_4:28044150-28044169 Msa0984210:CDS 50.0%
AGGTTGTACCTCCTAAAGCC+TGG - chr6_4:28044164-28044183 None:intergenic 50.0%
CCAGTTCGAAGGTTACGAAC+AGG - chr6_4:28044222-28044241 None:intergenic 50.0%
CCTGTTCGTAACCTTCGAAC+TGG + chr6_4:28044219-28044238 Msa0984210:CDS 50.0%
TTTCAACACGGCCAGTTCGA+AGG - chr6_4:28044233-28044252 None:intergenic 50.0%
TCTTCTCAAGACAAGGGACC+AGG - chr6_4:28044427-28044446 None:intergenic 50.0%
! CTCACTATGATAGTGCCTCG+TGG + chr6_4:28044466-28044485 Msa0984210:intron 50.0%
TGGGGGGATAACAGAACTGA+GGG - chr6_4:28044527-28044546 None:intergenic 50.0%
ATGGGGGGATAACAGAACTG+AGG - chr6_4:28044528-28044547 None:intergenic 50.0%
! CCATGAGTTGACACAATGGG+GGG - chr6_4:28044543-28044562 None:intergenic 50.0%
CAGGGTCAACTGCATAGTTG+TGG - chr6_4:28044776-28044795 None:intergenic 50.0%
TTCTACTCCTTCAGGCAGTG+TGG - chr6_4:28044799-28044818 None:intergenic 50.0%
TTGAGCAGGGAAAGCAAGAC+CGG - chr6_4:28044856-28044875 None:intergenic 50.0%
TGCTATCCCACCATGCTAGA+AGG + chr6_4:28045254-28045273 Msa0984210:three_prime_UTR 50.0%
TTGCAATTGTGGGGGTTGGA+TGG + chr6_4:28045781-28045800 Msa0984210:three_prime_UTR 50.0%
TGCAATTGTGGGGGTTGGAT+GGG + chr6_4:28045782-28045801 Msa0984210:three_prime_UTR 50.0%
GGTGCTTCAGGAACCCAAGT+TGG + chr6_4:28042659-28042678 Msa0984210:CDS 55.0%
! CGGGAAGATGGCAGCCTTAT+TGG + chr6_4:28043366-28043385 Msa0984210:CDS 55.0%
TCGGATGCTGGCCATGTAGA+TGG - chr6_4:28043997-28044016 None:intergenic 55.0%
GGAACAGCAGAAGGATCTCC+AGG - chr6_4:28044063-28044082 None:intergenic 55.0%
GGGACATCAATTGCTTGGCC+AGG + chr6_4:28044143-28044162 Msa0984210:CDS 55.0%
!! TTGCTTGGCCAGGCTTTAGG+AGG + chr6_4:28044153-28044172 Msa0984210:CDS 55.0%
CCCCCCATTGTGTCAACTCA+TGG + chr6_4:28044540-28044559 Msa0984210:intron 55.0%
! TACCACCCTGAAGCATCTCC+TGG + chr6_4:28044894-28044913 Msa0984210:CDS 55.0%
GAGGTCCAGGAGATGCTTCA+GGG - chr6_4:28044902-28044921 None:intergenic 55.0%
TGAGGTCCAGGAGATGCTTC+AGG - chr6_4:28044903-28044922 None:intergenic 55.0%
! TACAAGGGCTAGCAGCCGAT+TGG + chr6_4:28045393-28045412 Msa0984210:three_prime_UTR 55.0%
GGCTACGAGCCTATGCCAAT+CGG - chr6_4:28045411-28045430 None:intergenic 55.0%
GCAATTGTGGGGGTTGGATG+GGG + chr6_4:28045783-28045802 Msa0984210:three_prime_UTR 55.0%
ACTGCGGCACTATAGCGCAG+CGG + chr6_4:28043524-28043543 Msa0984210:intron 60.0%
CTCCTTCAGGCAGTGTGGCA+GGG - chr6_4:28044794-28044813 None:intergenic 60.0%
ACTCCTTCAGGCAGTGTGGC+AGG - chr6_4:28044795-28044814 None:intergenic 60.0%
GTCCAGGAGATGCTTCAGGG+TGG - chr6_4:28044899-28044918 None:intergenic 60.0%
GGCTAGCAGCCGATTGGCAT+AGG + chr6_4:28045399-28045418 Msa0984210:three_prime_UTR 60.0%
GCGGCGCCTTGGAACCAAAG+AGG - chr6_4:28042371-28042390 None:intergenic 65.0%
GACCCTGCCACACTGCCTGA+AGG + chr6_4:28044789-28044808 Msa0984210:CDS 65.0%
! AGAGGTGTGTGGCGGCGCCT+TGG - chr6_4:28042382-28042401 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 28042197 28045823 28042197 ID=Msa0984210;Name=Msa0984210
chr6_4 mRNA 28042197 28045823 28042197 ID=Msa0984210-mRNA-1;Parent=Msa0984210;Name=Msa0984210-mRNA-1;_AED=0.10;_eAED=0.10;_QI=130|0.88|0.8|1|0.88|0.9|10|587|401
chr6_4 exon 28042197 28042438 28042197 ID=Msa0984210-mRNA-1:exon:7889;Parent=Msa0984210-mRNA-1
chr6_4 exon 28042579 28042711 28042579 ID=Msa0984210-mRNA-1:exon:7890;Parent=Msa0984210-mRNA-1
chr6_4 exon 28042818 28042906 28042818 ID=Msa0984210-mRNA-1:exon:7891;Parent=Msa0984210-mRNA-1
chr6_4 exon 28043000 28043060 28043000 ID=Msa0984210-mRNA-1:exon:7892;Parent=Msa0984210-mRNA-1
chr6_4 exon 28043170 28043237 28043170 ID=Msa0984210-mRNA-1:exon:7893;Parent=Msa0984210-mRNA-1
chr6_4 exon 28043331 28043387 28043331 ID=Msa0984210-mRNA-1:exon:7894;Parent=Msa0984210-mRNA-1
chr6_4 exon 28043735 28043823 28043735 ID=Msa0984210-mRNA-1:exon:7895;Parent=Msa0984210-mRNA-1
chr6_4 exon 28043916 28044263 28043916 ID=Msa0984210-mRNA-1:exon:7896;Parent=Msa0984210-mRNA-1
chr6_4 exon 28044771 28044936 28044771 ID=Msa0984210-mRNA-1:exon:7897;Parent=Msa0984210-mRNA-1
chr6_4 exon 28045154 28045823 28045154 ID=Msa0984210-mRNA-1:exon:7898;Parent=Msa0984210-mRNA-1
chr6_4 five_prime_UTR 28042197 28042326 28042197 ID=Msa0984210-mRNA-1:five_prime_utr;Parent=Msa0984210-mRNA-1
chr6_4 CDS 28042327 28042438 28042327 ID=Msa0984210-mRNA-1:cds;Parent=Msa0984210-mRNA-1
chr6_4 CDS 28042579 28042711 28042579 ID=Msa0984210-mRNA-1:cds;Parent=Msa0984210-mRNA-1
chr6_4 CDS 28042818 28042906 28042818 ID=Msa0984210-mRNA-1:cds;Parent=Msa0984210-mRNA-1
chr6_4 CDS 28043000 28043060 28043000 ID=Msa0984210-mRNA-1:cds;Parent=Msa0984210-mRNA-1
chr6_4 CDS 28043170 28043237 28043170 ID=Msa0984210-mRNA-1:cds;Parent=Msa0984210-mRNA-1
chr6_4 CDS 28043331 28043387 28043331 ID=Msa0984210-mRNA-1:cds;Parent=Msa0984210-mRNA-1
chr6_4 CDS 28043735 28043823 28043735 ID=Msa0984210-mRNA-1:cds;Parent=Msa0984210-mRNA-1
chr6_4 CDS 28043916 28044263 28043916 ID=Msa0984210-mRNA-1:cds;Parent=Msa0984210-mRNA-1
chr6_4 CDS 28044771 28044936 28044771 ID=Msa0984210-mRNA-1:cds;Parent=Msa0984210-mRNA-1
chr6_4 CDS 28045154 28045236 28045154 ID=Msa0984210-mRNA-1:cds;Parent=Msa0984210-mRNA-1
chr6_4 three_prime_UTR 28045237 28045823 28045237 ID=Msa0984210-mRNA-1:three_prime_utr;Parent=Msa0984210-mRNA-1
Gene Sequence

>Msa0984210

ATGGCAACCAAAGCTTTGGACTTCACCCTTTCTCTCAATGACCTCTTTGGTTCCAAGGCGCCGCCACACACCTCTGCAAAAGTTTCTGTCTTCTCTGTCAGATGTTCTTCTGGTAATGGGGAAAGGCCATGGAAAAATTCAGATGCTAGACTTGTGTTAGAAGATGGTTCAATTTGGAAAGCTAAATCATTTGGTGCTTCAGGAACCCAAGTTGGTGAAGTTGTTTTCAATACATCATTGACTGGGTATCAAGAAATTTTAACTGATCCTAGTTATGCTGGCCAGTTTGTGCTGATGACAAATCCACATATTGGGAATACTGGCATCAATTTTGATGACGAGGAATCAGCACAGTGCTTCCTTTCCGGTTTAGTAATTAGAAGTTTGAGTATCAGTACCTCAAACTGGAGATGTGTGAAGGATTTGGGCGATTACTTAACTGAAAGGAATGTCATGGGAATTTATGATGTTGATACAAGGGCAATCACACGTAGATTACGGGAAGATGGCAGCCTTATTGTATCGTGCAAGTCACCATATGAATGGATTGATAGAACAAAGGAAGAATGGGAGTTTAGCTCCAGTGAAGGGCCTAGAGATACTTTCCATGTAGTTGCATACGATTTTGGAATCAAGCATAATATACTTAGGCGTCTAGCATCATATGGCTGTAAAATCACTGTTGTGCCATCTACATGGCCAGCATCCGAAACTTTGAAGTTATATCCAGATGGTGTACTTTTCAGCAATGGTCCTGGAGATCCTTCTGCTGTTCCTTATGCCGTTGAAACAGTAAAGAATATCATTGGAAAGGTGCCTGTTTTTGGAATTTGCATGGGACATCAATTGCTTGGCCAGGCTTTAGGAGGTACAACCTACAAGATGAAATTTGGTCACCATGGAGGAAATCATCCTGTTCGTAACCTTCGAACTGGCCGTGTTGAAATTAGTTCTCAGAACCACAACTATGCAGTTGACCCTGCCACACTGCCTGAAGGAGTAGAAGTTACTCATATCAATCTCAATGACAGTAGTTGTGCCGGTCTTGCTTTCCCTGCTCAAAAGATTGTGTCTCTTCAATACCACCCTGAAGCATCTCCTGGACCTCATGATTCTGACAACGCTTTTCGGGAGTTTATAGAGCTAATGAAGCATGAGAAAAACCAAACACCGAATGAAAACCTACACCAACTGCAATCAGTGTAA
Protein sequence

>Msa0984210

MATKALDFTLSLNDLFGSKAPPHTSAKVSVFSVRCSSGNGERPWKNSDARLVLEDGSIWKAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGINFDDEESAQCFLSGLVIRSLSISTSNWRCVKDLGDYLTERNVMGIYDVDTRAITRRLREDGSLIVSCKSPYEWIDRTKEEWEFSSSEGPRDTFHVVAYDFGIKHNILRRLASYGCKITVVPSTWPASETLKLYPDGVLFSNGPGDPSAVPYAVETVKNIIGKVPVFGICMGHQLLGQALGGTTYKMKFGHHGGNHPVRNLRTGRVEISSQNHNYAVDPATLPEGVEVTHINLNDSSCAGLAFPAQKIVSLQYHPEASPGPHDSDNAFREFIELMKHEKNQTPNENLHQLQSV*