AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0473720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0473720 MtrunA17_Chr3g0129631 91.204 432 7 1 1 401 1 432 0.0 811
Msa0473720 MtrunA17_Chr4g0057811 87.963 432 20 2 1 401 1 431 0.0 780
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0473720 AT3G27740.1 67.366 429 100 3 1 390 3 430 0.0 598
Msa0473720 AT3G27740.2 62.312 398 100 7 1 390 3 358 2.88e-172 485
Msa0473720 AT1G25220.1 28.042 189 123 5 213 389 86 273 8.87e-12 65.9
Msa0473720 AT5G57890.1 27.513 189 124 5 213 389 83 270 1.07e-11 65.5
Msa0473720 AT1G25220.2 27.586 203 132 6 201 389 85 286 2.60e-11 64.3
Msa0473720 AT1G24909.1 27.513 189 124 5 213 389 32 219 5.44e-11 62.4
Msa0473720 AT1G25083.1 27.513 189 124 5 213 389 32 219 5.44e-11 62.4
Msa0473720 AT1G25155.1 27.513 189 124 5 213 389 32 219 5.44e-11 62.4

Find 141 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAATACTGGCATCAATTT+TGG 0.168281 3_3:+76456538 Msa0473720:CDS
CGGGAAGATGGCAGCCTTAT+TGG 0.173503 3_3:+76457019 Msa0473720:CDS
TCAGCACAGTGCTTCCTTTC+CGG 0.240008 3_3:+76456664 Msa0473720:CDS
TAATTAGAAGTTTGAGTATC+AGG 0.243391 3_3:+76456692 Msa0473720:CDS
CTTTCTCTCAATGACCTCTT+TGG 0.245128 3_3:+76456007 Msa0473720:CDS
TTCTTAGTAGTTTCTATCTA+TGG 0.264325 3_3:+76458963 Msa0473720:three_prime_UTR
CAATTGCTTGGCCAGGCTTT+AGG 0.266746 3_3:+76457803 Msa0473720:CDS
GCTAAATCATTTGGTGCTTC+AGG 0.275622 3_3:+76456300 Msa0473720:CDS
TTCTCTGTCAGATGTTCTTC+TGG 0.292462 3_3:+76456070 Msa0473720:CDS
GCTAGCCCTTGTACAGAAAA+TGG 0.293625 3_3:-76459036 None:intergenic
ACAACCTACAAGATGAAATT+TGG 0.299468 3_3:+76457830 Msa0473720:CDS
AGAAGAAAGAAACATATTAA+TGG 0.305952 3_3:+76455961 Msa0473720:exon
TGTTAGAAGATGGTTCAATT+TGG 0.310513 3_3:+76456274 Msa0473720:CDS
CTATGGTTTGTAGATGAATA+AGG 0.315269 3_3:+76458980 Msa0473720:three_prime_UTR
CACAACTTTCTTGCAATTGT+GGG 0.322795 3_3:+76459424 Msa0473720:three_prime_UTR
CTGGAGATGTGTGAAGGATT+TGG 0.330063 3_3:+76456832 Msa0473720:CDS
TAGGTAGTTGCATACGATTT+TGG 0.336986 3_3:+76457566 Msa0473720:intron
ATTTGGAAAGCTAAATCATT+TGG 0.341512 3_3:+76456291 Msa0473720:CDS
TGAGGTCCAGGAGATGCTTC+AGG 0.357210 3_3:-76458553 None:intergenic
TGGATATAACTTCAAAGTTT+CGG 0.358550 3_3:-76457666 None:intergenic
GTGACCAAATTTCATCTTGT+AGG 0.368330 3_3:-76457834 None:intergenic
AACTTCAAAGTTTCGGATGC+TGG 0.372898 3_3:-76457659 None:intergenic
AATCCACATATTGGGAATAC+TGG 0.375932 3_3:+76456526 Msa0473720:CDS
TCATCCAATAGGTTTGGATT+GGG 0.377058 3_3:-76459243 None:intergenic
GGTTGCTGCTAACACTGGTT+TGG 0.380442 3_3:+76455890 Msa0473720:five_prime_UTR
GCACAATGTCTTCATCCAAT+AGG 0.380576 3_3:-76459254 None:intergenic
TGTTATGTAGTCATCAAGTT+TGG 0.380667 3_3:-76459348 None:intergenic
AATCCCCAATCCAAACCTAT+TGG 0.381071 3_3:+76459239 Msa0473720:three_prime_UTR
GTTCTATCAATCCATTCATA+TGG 0.384320 3_3:-76457402 None:intergenic
ACTCCTTCAGGCAGTGTGGC+AGG 0.385852 3_3:-76458445 None:intergenic
GGGCAATCACACGTAGATTA+CGG 0.396622 3_3:+76456999 Msa0473720:CDS
TAACACATGCAATTTGCAAT+TGG 0.396704 3_3:+76459366 Msa0473720:three_prime_UTR
CTGATGACAAATCCACATAT+TGG 0.396769 3_3:+76456517 Msa0473720:CDS
ATGTCTTCATCCAATAGGTT+TGG 0.401382 3_3:-76459249 None:intergenic
TGAAAACAACTTCACCAACT+TGG 0.401704 3_3:-76456326 None:intergenic
TCGGATGCTGGCCATGTAGA+TGG 0.404003 3_3:-76457647 None:intergenic
TGAGTAACTTCTACTCCTTC+AGG 0.404731 3_3:-76458457 None:intergenic
TTTACTGTTTCAACGGCATA+AGG 0.405190 3_3:-76457734 None:intergenic
ATTAATGGCAACAAAAGCTT+TGG 0.405497 3_3:+76455976 Msa0473720:exon
TGCATGAATGTATAGGTAAT+GGG 0.406728 3_3:+76456217 Msa0473720:intron
TCACAACTTTCTTGCAATTG+TGG 0.413831 3_3:+76459423 Msa0473720:three_prime_UTR
CAAACTTCTAATTACTAAAC+CGG 0.415332 3_3:-76456683 None:intergenic
GGCAATCACACGTAGATTAC+GGG 0.418709 3_3:+76457000 Msa0473720:CDS
TGGAGATGTGTGAAGGATTT+GGG 0.420135 3_3:+76456833 Msa0473720:CDS
TTCATCCAATAGGTTTGGAT+TGG 0.422242 3_3:-76459244 None:intergenic
TGCTATCCCACCATGCTAGA+AGG 0.425917 3_3:+76458907 Msa0473720:three_prime_UTR
TTGATAGAACAAAGGAAGAA+TGG 0.426377 3_3:+76457415 Msa0473720:CDS
TGATGACAAATCCACATATT+GGG 0.432957 3_3:+76456518 Msa0473720:CDS
AGCGATTAGCTAATAAAGTA+AGG 0.433096 3_3:-76459213 None:intergenic
ATTTATTCAGTACCTCAAAC+TGG 0.433137 3_3:+76456813 Msa0473720:intron
CAGTGCTCAAAACACCAATA+AGG 0.434979 3_3:-76457033 None:intergenic
TTAACTGATCCTAGTTATGC+TGG 0.440990 3_3:+76456484 Msa0473720:CDS
CTTCACACATCTCCAGTTTG+AGG 0.444880 3_3:-76456825 None:intergenic
CCGTGTTGAAATTAGTTCTC+AGG 0.452192 3_3:+76457895 Msa0473720:CDS
GGGACATCAATTGCTTGGCC+AGG 0.456415 3_3:+76457796 Msa0473720:CDS
TGCATGGGACATCAATTGCT+TGG 0.457302 3_3:+76457791 Msa0473720:CDS
CTTAGGCGTCTAGCATCATA+TGG 0.460279 3_3:+76457605 Msa0473720:CDS
TGTGACCACTTGCAGCTAAA+GGG 0.464808 3_3:-76459405 None:intergenic
CAAAGAGGTCATTGAGAGAA+AGG 0.466089 3_3:-76456006 None:intergenic
GAAACAGTAAAGAATATCAT+TGG 0.466180 3_3:+76457746 Msa0473720:CDS
TTGCTGAAAAGTACACCATC+TGG 0.470969 3_3:-76457686 None:intergenic
GATTTGTCATCAGCACAAAC+TGG 0.471155 3_3:-76456507 None:intergenic
ACATTATCCTTCTTCAATGA+AGG 0.472185 3_3:-76459082 None:intergenic
GCTAGACTTGTGTTAGAAGA+TGG 0.472551 3_3:+76456264 Msa0473720:CDS
TACCACCCTGAAGCATCTCC+TGG 0.473772 3_3:+76458547 Msa0473720:CDS
TGATAGAACAAAGGAAGAAT+GGG 0.475190 3_3:+76457416 Msa0473720:CDS
GAAAACAACTTCACCAACTT+GGG 0.481798 3_3:-76456325 None:intergenic
CGTGCAAGTCACCATATGAA+TGG 0.483758 3_3:+76457391 Msa0473720:CDS
GGAACAGCAGAAGGATCTCC+AGG 0.484183 3_3:-76457713 None:intergenic
CAATGACCTCTTTGGTTCCA+AGG 0.486297 3_3:+76456015 Msa0473720:CDS
ATGCCAGTATTCCCAATATG+TGG 0.486638 3_3:-76456529 None:intergenic
TTGTGACCACTTGCAGCTAA+AGG 0.489830 3_3:-76459406 None:intergenic
AAAGTATGTGATAAAAGCTC+AGG 0.494537 3_3:+76458940 Msa0473720:three_prime_UTR
TAGATGAATAAGGACTTCCT+TGG 0.495299 3_3:+76458990 Msa0473720:three_prime_UTR
GATATTCTTTACTGTTTCAA+CGG 0.495805 3_3:-76457741 None:intergenic
TTGAGCAGGGAAAGCAAGAC+CGG 0.499137 3_3:-76458506 None:intergenic
CTTTATCCTTCTAGCATGGT+GGG 0.501549 3_3:-76458913 None:intergenic
CTCCTTCAGGCAGTGTGGCA+GGG 0.505914 3_3:-76458444 None:intergenic
GAATCAAGCATAATATACTT+AGG 0.506239 3_3:+76457588 Msa0473720:CDS
AGAGGTGTGTGGCGGCGCCT+TGG 0.508323 3_3:-76456032 None:intergenic
ACAACTTTCTTGCAATTGTG+GGG 0.513003 3_3:+76459425 Msa0473720:three_prime_UTR
CTCGTAGCCTTCATTGAAGA+AGG 0.515567 3_3:+76459075 Msa0473720:three_prime_UTR
CCAGTTCGAAGGTTACGAAC+AGG 0.516140 3_3:-76457872 None:intergenic
CTCAATGACAGTAGTTGTGC+CGG 0.517106 3_3:+76458487 Msa0473720:CDS
ACAAACTGGCCAGCATAACT+AGG 0.518582 3_3:-76456493 None:intergenic
CTTAACTGAAAGGAATGTCA+TGG 0.522571 3_3:+76456862 Msa0473720:CDS
TTGTCAGAATCATGAGGTCC+AGG 0.525671 3_3:-76458565 None:intergenic
GAGGTCCAGGAGATGCTTCA+GGG 0.527220 3_3:-76458552 None:intergenic
AGTATCTCTAGGCCCTTCAC+TGG 0.527684 3_3:-76457448 None:intergenic
CAACTTTCTTGCAATTGTGG+GGG 0.530199 3_3:+76459426 Msa0473720:three_prime_UTR
CCTGTTCGTAACCTTCGAAC+TGG 0.534549 3_3:+76457872 Msa0473720:CDS
CATCCAATAGGTTTGGATTG+GGG 0.536858 3_3:-76459242 None:intergenic
TGGGCGATTACTTAACTGAA+AGG 0.537172 3_3:+76456852 Msa0473720:CDS
CTTACATGGAAAGTATCTCT+AGG 0.537477 3_3:-76457459 None:intergenic
AATACTTTATCCTTCTAGCA+TGG 0.538523 3_3:-76458917 None:intergenic
TAGGTAATGGGGAAAGGCCA+TGG 0.546071 3_3:+76456229 Msa0473720:intron
GGTGCTTCAGGAACCCAAGT+TGG 0.546817 3_3:+76456312 Msa0473720:CDS
CAACAGATGATGTTGATACA+AGG 0.549921 3_3:+76456978 Msa0473720:intron
ACACTGATTGCAGTTGGTGT+AGG 0.551642 3_3:-76458865 None:intergenic
ACACGTAGATTACGGGAAGA+TGG 0.551699 3_3:+76457007 Msa0473720:CDS
AAAGAGGTCATTGAGAGAAA+GGG 0.551745 3_3:-76456005 None:intergenic
GGCTAGCAGCCGATTGGCAT+AGG 0.554150 3_3:+76459052 Msa0473720:three_prime_UTR
TACAAGGGCTAGCAGCCGAT+TGG 0.556106 3_3:+76459046 Msa0473720:three_prime_UTR
TTGCTTGGCCAGGCTTTAGG+AGG 0.558881 3_3:+76457806 Msa0473720:CDS
AATGTATAGGTAATGGGGAA+AGG 0.560392 3_3:+76456223 Msa0473720:intron
TCACTGTTGTGCCATCTACA+TGG 0.561762 3_3:+76457636 Msa0473720:CDS
GAACAGGATGATTTCCTCCA+TGG 0.563497 3_3:-76457856 None:intergenic
ACATAGGTTGCTGCTAACAC+TGG 0.565602 3_3:+76455885 Msa0473720:five_prime_UTR
TTTCAACACGGCCAGTTCGA+AGG 0.571733 3_3:-76457883 None:intergenic
GCATGAATGTATAGGTAATG+GGG 0.572178 3_3:+76456218 Msa0473720:intron
CAGGGTCAACTGCATAGTTG+TGG 0.573224 3_3:-76458426 None:intergenic
AGGTTGTACCTCCTAAAGCC+TGG 0.573954 3_3:-76457814 None:intergenic
AGTAAAGAATATCATTGGAA+AGG 0.576011 3_3:+76457751 Msa0473720:CDS
GGCTACGAGCCTATGCCAAT+CGG 0.576216 3_3:-76459061 None:intergenic
GCGATTAGCTAATAAAGTAA+GGG 0.585873 3_3:-76459212 None:intergenic
ATTATTACACTGATTGCAGT+TGG 0.586719 3_3:-76458871 None:intergenic
GACCCTGCCACACTGCCTGA+AGG 0.593729 3_3:+76458442 Msa0473720:CDS
GAAAATCTTGATCAACTCCA+AGG 0.593981 3_3:-76459007 None:intergenic
TTAACTGAAAGGAATGTCAT+GGG 0.597258 3_3:+76456863 Msa0473720:CDS
GTCATTGAGAGAAAGGGTGA+AGG 0.598395 3_3:-76455999 None:intergenic
TGGGAGTTTAGCTCCAGTGA+AGG 0.599112 3_3:+76457435 Msa0473720:CDS
CATATCCCTTTAGCTGCAAG+TGG 0.605945 3_3:+76459400 Msa0473720:three_prime_UTR
ACGGCATAAGGAACAGCAGA+AGG 0.606024 3_3:-76457722 None:intergenic
ACTTTATCCTTCTAGCATGG+TGG 0.607923 3_3:-76458914 None:intergenic
CTCAAACTGGAGATGTGTGA+AGG 0.613677 3_3:+76456826 Msa0473720:CDS
ACTTTGAAGTTATATCCAGA+TGG 0.617701 3_3:+76457671 Msa0473720:CDS
AAGATGAAATTTGGTCACCA+TGG 0.620210 3_3:+76457839 Msa0473720:CDS
ATGAAATTTGGTCACCATGG+AGG 0.624582 3_3:+76457842 Msa0473720:CDS
TTCTAATTACTAAACCGGAA+AGG 0.626092 3_3:-76456678 None:intergenic
TGAATGGATTGATAGAACAA+AGG 0.627214 3_3:+76457407 Msa0473720:CDS
CCTAGGTGAAGAGAAAACAT+AGG 0.629266 3_3:+76455869 Msa0473720:five_prime_UTR
GGGAGTTTAGCTCCAGTGAA+GGG 0.629622 3_3:+76457436 Msa0473720:CDS
AACAGATGATGTTGATACAA+GGG 0.640054 3_3:+76456979 Msa0473720:intron
GGACCTCATGATTCTGACAA+CGG 0.640994 3_3:+76458568 Msa0473720:CDS
GCGGCGCCTTGGAACCAAAG+AGG 0.643056 3_3:-76456021 None:intergenic
TTCTACTCCTTCAGGCAGTG+TGG 0.658466 3_3:-76458449 None:intergenic
CCTTTCAACTACAAGCTGCA+CGG 0.674886 3_3:-76459459 None:intergenic
TCATTGTCTGACAGATGACG+AGG 0.685177 3_3:+76456639 Msa0473720:intron
TCACCGTTGTCAGAATCATG+AGG 0.688390 3_3:-76458571 None:intergenic
CCTGAGAACTAATTTCAACA+CGG 0.701914 3_3:-76457895 None:intergenic
GTCCAGGAGATGCTTCAGGG+TGG 0.722700 3_3:-76458549 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCATAATTATTTGT+TGG + chr3_3:76456111-76456130 Msa0473720:intron 10.0%
!! ATTAATTGATACATATAAAT+TGG + chr3_3:76458398-76458417 Msa0473720:intron 10.0%
!! ATATCACAAGATTTATAATT+TGG - chr3_3:76456373-76456392 None:intergenic 15.0%
!! AATAAATAAAAAATTGCAAC+TGG + chr3_3:76458146-76458165 Msa0473720:intron 15.0%
!!! ATAGCATAAAATTTTGAATA+TGG + chr3_3:76458236-76458255 Msa0473720:intron 15.0%
!! TTTAAACAAACCATAAATAT+AGG - chr3_3:76458298-76458317 None:intergenic 15.0%
!! TGATAATAAATATAACTGTT+TGG + chr3_3:76458630-76458649 Msa0473720:intron 15.0%
!!! AAATTTTTTAAAGATTGTGA+AGG - chr3_3:76458656-76458675 None:intergenic 15.0%
!! CAAATTGAAAATAAAAACCT+AGG + chr3_3:76455852-76455871 Msa0473720:five_prime_UTR 20.0%
!! AGAAGAAAGAAACATATTAA+TGG + chr3_3:76455961-76455980 Msa0473720:exon 20.0%
!!! AAAAAGACAACATTTTTCAT+GGG - chr3_3:76456144-76456163 None:intergenic 20.0%
!!! AAAAAAGACAACATTTTTCA+TGG - chr3_3:76456145-76456164 None:intergenic 20.0%
!!! AAATGTTGTCTTTTTTGATT+AGG + chr3_3:76456149-76456168 Msa0473720:intron 20.0%
!!! GATATTCTTTTGTTGTTTTA+TGG + chr3_3:76456388-76456407 Msa0473720:intron 20.0%
!! TTAAGTAATTACCATGATTA+CGG - chr3_3:76457964-76457983 None:intergenic 20.0%
!! TAAATCCATTTGAATTCATT+TGG + chr3_3:76457981-76458000 Msa0473720:intron 20.0%
!!! TATATTTTTTGCTTCATAGA+AGG + chr3_3:76458047-76458066 Msa0473720:intron 20.0%
!!! ATATTTTTTGCTTCATAGAA+GGG + chr3_3:76458048-76458067 Msa0473720:intron 20.0%
!!! GTATTTTATTCTTTTTGTCA+TGG + chr3_3:76458364-76458383 Msa0473720:intron 20.0%
!! AAAAATTTATATTCAAGAGC+AGG + chr3_3:76458668-76458687 Msa0473720:intron 20.0%
!!! TATTTTTACAACTTGAAATG+TGG + chr3_3:76459147-76459166 Msa0473720:three_prime_UTR 20.0%
!!! ATTTTTACAACTTGAAATGT+GGG + chr3_3:76459148-76459167 Msa0473720:three_prime_UTR 20.0%
!! TTCATTCAAGTAAAAAATGT+TGG - chr3_3:76459282-76459301 None:intergenic 20.0%
!!! CTTGAATGAAATTTTTGTTA+TGG + chr3_3:76459292-76459311 Msa0473720:three_prime_UTR 20.0%
!!! TTTTTTGATTAGGTGTAGTT+GGG + chr3_3:76456159-76456178 Msa0473720:intron 25.0%
! AAATGAATGCATGAATGTAT+AGG + chr3_3:76456210-76456229 Msa0473720:intron 25.0%
! ATTTGGAAAGCTAAATCATT+TGG + chr3_3:76456291-76456310 Msa0473720:CDS 25.0%
!!! TTTTCAATACATCATTGACT+GGG + chr3_3:76456343-76456362 Msa0473720:CDS 25.0%
! AATGAAACAGAAACTCAATT+AGG - chr3_3:76456425-76456444 None:intergenic 25.0%
! TTAAAATTTCTTGATACCTG+AGG - chr3_3:76456468-76456487 None:intergenic 25.0%
! CAAACTTCTAATTACTAAAC+CGG - chr3_3:76456686-76456705 None:intergenic 25.0%
! TAATTAGAAGTTTGAGTATC+AGG + chr3_3:76456692-76456711 Msa0473720:CDS 25.0%
! TTACCCAAAATTCAACAAAA+GGG - chr3_3:76457513-76457532 None:intergenic 25.0%
! GAATCAAGCATAATATACTT+AGG + chr3_3:76457588-76457607 Msa0473720:CDS 25.0%
! TGGATATAACTTCAAAGTTT+CGG - chr3_3:76457669-76457688 None:intergenic 25.0%
! GATATTCTTTACTGTTTCAA+CGG - chr3_3:76457744-76457763 None:intergenic 25.0%
! GAAACAGTAAAGAATATCAT+TGG + chr3_3:76457746-76457765 Msa0473720:CDS 25.0%
! AGTAAAGAATATCATTGGAA+AGG + chr3_3:76457751-76457770 Msa0473720:CDS 25.0%
!!! TTTTATTTATTTTTGCCACG+AGG - chr3_3:76458137-76458156 None:intergenic 25.0%
!!! AAATTTTATGCTATTTCCAC+AGG - chr3_3:76458230-76458249 None:intergenic 25.0%
! TATGTGTAGTCCTATATTTA+TGG + chr3_3:76458285-76458304 Msa0473720:intron 25.0%
!! CTTGATAACATGTAATGATA+TGG - chr3_3:76458325-76458344 None:intergenic 25.0%
! ACGAAATTGTAAAAGCAAAT+TGG - chr3_3:76458726-76458745 None:intergenic 25.0%
! TTCTTAGTAGTTTCTATCTA+TGG + chr3_3:76458963-76458982 Msa0473720:three_prime_UTR 25.0%
!! TTTTTACAACTTGAAATGTG+GGG + chr3_3:76459149-76459168 Msa0473720:three_prime_UTR 25.0%
!!! TTTTTGTTATGGAAGAATGA+AGG + chr3_3:76459303-76459322 Msa0473720:three_prime_UTR 25.0%
ATTAATGGCAACAAAAGCTT+TGG + chr3_3:76455976-76455995 Msa0473720:exon 30.0%
!!! CTTTTTTGATTAGGTGTAGT+TGG + chr3_3:76456158-76456177 Msa0473720:intron 30.0%
ATGCATGAATGTATAGGTAA+TGG + chr3_3:76456216-76456235 Msa0473720:intron 30.0%
TGCATGAATGTATAGGTAAT+GGG + chr3_3:76456217-76456236 Msa0473720:intron 30.0%
TGTTAGAAGATGGTTCAATT+TGG + chr3_3:76456274-76456293 Msa0473720:CDS 30.0%
! GTTTTCAATACATCATTGAC+TGG + chr3_3:76456342-76456361 Msa0473720:CDS 30.0%
TGATGACAAATCCACATATT+GGG + chr3_3:76456518-76456537 Msa0473720:CDS 30.0%
!! TCAAGAGATGGTTTTTAAAG+TGG - chr3_3:76456618-76456637 None:intergenic 30.0%
TTCTAATTACTAAACCGGAA+AGG - chr3_3:76456681-76456700 None:intergenic 30.0%
AGAAAGTAAAGCTCAATCAA+CGG - chr3_3:76456746-76456765 None:intergenic 30.0%
ATTTATTCAGTACCTCAAAC+TGG + chr3_3:76456813-76456832 Msa0473720:intron 30.0%
TTAACTGAAAGGAATGTCAT+GGG + chr3_3:76456863-76456882 Msa0473720:CDS 30.0%
AACAGATGATGTTGATACAA+GGG + chr3_3:76456979-76456998 Msa0473720:intron 30.0%
TACTTCAGATGTCTAAATCA+TGG + chr3_3:76457080-76457099 Msa0473720:intron 30.0%
ACTTCAGATGTCTAAATCAT+GGG + chr3_3:76457081-76457100 Msa0473720:intron 30.0%
TCTAAATCATGGGATATTGT+TGG + chr3_3:76457091-76457110 Msa0473720:intron 30.0%
! TTGTTGGTAAGAATGACTAT+TGG + chr3_3:76457107-76457126 Msa0473720:intron 30.0%
GTTCTATCAATCCATTCATA+TGG - chr3_3:76457405-76457424 None:intergenic 30.0%
!! TGAATGGATTGATAGAACAA+AGG + chr3_3:76457407-76457426 Msa0473720:CDS 30.0%
TTGATAGAACAAAGGAAGAA+TGG + chr3_3:76457415-76457434 Msa0473720:CDS 30.0%
TGATAGAACAAAGGAAGAAT+GGG + chr3_3:76457416-76457435 Msa0473720:CDS 30.0%
TCCATGTAAGTTTATACAGT+AGG + chr3_3:76457472-76457491 Msa0473720:intron 30.0%
! ACTCCCTTTTGTTGAATTTT+GGG + chr3_3:76457507-76457526 Msa0473720:intron 30.0%
CTTACCCAAAATTCAACAAA+AGG - chr3_3:76457514-76457533 None:intergenic 30.0%
!! GTACTGATGAATGATCTTTT+AGG + chr3_3:76457547-76457566 Msa0473720:intron 30.0%
!! ACTTTGAAGTTATATCCAGA+TGG + chr3_3:76457671-76457690 Msa0473720:CDS 30.0%
ACAACCTACAAGATGAAATT+TGG + chr3_3:76457830-76457849 Msa0473720:CDS 30.0%
! TTGAAATTAGTTCTCAGGTA+TGG + chr3_3:76457900-76457919 Msa0473720:intron 30.0%
TCAGACCAAATGAATTCAAA+TGG - chr3_3:76457989-76458008 None:intergenic 30.0%
! TTCTTTTCTTCTCAAGACAA+GGG - chr3_3:76458086-76458105 None:intergenic 30.0%
! ATTCTTTTCTTCTCAAGACA+AGG - chr3_3:76458087-76458106 None:intergenic 30.0%
! ATTCTTTTTGTCATGGTCTT+TGG + chr3_3:76458371-76458390 Msa0473720:intron 30.0%
GCTCTTTATCAAAAGAAGTT+TGG + chr3_3:76458605-76458624 Msa0473720:intron 30.0%
GTCTTGTAGGATATAATCAT+TGG + chr3_3:76458698-76458717 Msa0473720:intron 30.0%
ATCACAACAGTGGTTATTAT+TGG - chr3_3:76458773-76458792 None:intergenic 30.0%
ATTATCAACAATCACAACAG+TGG - chr3_3:76458783-76458802 None:intergenic 30.0%
!!! TTGTTGATAATGCAGCTTTT+CGG + chr3_3:76458792-76458811 Msa0473720:intron 30.0%
! ATTATTACACTGATTGCAGT+TGG - chr3_3:76458874-76458893 None:intergenic 30.0%
AATACTTTATCCTTCTAGCA+TGG - chr3_3:76458920-76458939 None:intergenic 30.0%
AAAGTATGTGATAAAAGCTC+AGG + chr3_3:76458940-76458959 Msa0473720:three_prime_UTR 30.0%
! CTATGGTTTGTAGATGAATA+AGG + chr3_3:76458980-76458999 Msa0473720:three_prime_UTR 30.0%
ACATTATCCTTCTTCAATGA+AGG - chr3_3:76459085-76459104 None:intergenic 30.0%
! GCGATTAGCTAATAAAGTAA+GGG - chr3_3:76459215-76459234 None:intergenic 30.0%
! AGCGATTAGCTAATAAAGTA+AGG - chr3_3:76459216-76459235 None:intergenic 30.0%
TGTTATGTAGTCATCAAGTT+TGG - chr3_3:76459351-76459370 None:intergenic 30.0%
TAACACATGCAATTTGCAAT+TGG + chr3_3:76459366-76459385 Msa0473720:three_prime_UTR 30.0%
AAAGAGGTCATTGAGAGAAA+GGG - chr3_3:76456008-76456027 None:intergenic 35.0%
GCATGAATGTATAGGTAATG+GGG + chr3_3:76456218-76456237 Msa0473720:intron 35.0%
!! AATGTATAGGTAATGGGGAA+AGG + chr3_3:76456223-76456242 Msa0473720:intron 35.0%
! CTAGCATCTGAATTTTTCCA+TGG - chr3_3:76456249-76456268 None:intergenic 35.0%
GAAAACAACTTCACCAACTT+GGG - chr3_3:76456328-76456347 None:intergenic 35.0%
TGAAAACAACTTCACCAACT+TGG - chr3_3:76456329-76456348 None:intergenic 35.0%
ATTTCTTGATACCTGAGGAA+TGG - chr3_3:76456463-76456482 None:intergenic 35.0%
TTAACTGATCCTAGTTATGC+TGG + chr3_3:76456484-76456503 Msa0473720:CDS 35.0%
CTGATGACAAATCCACATAT+TGG + chr3_3:76456517-76456536 Msa0473720:CDS 35.0%
AATCCACATATTGGGAATAC+TGG + chr3_3:76456526-76456545 Msa0473720:CDS 35.0%
!!! TTTTAAAGTGGACTAGCACA+AGG - chr3_3:76456606-76456625 None:intergenic 35.0%
TCAGACAATGAATCAAGAGA+TGG - chr3_3:76456630-76456649 None:intergenic 35.0%
GCTCAATCAACGGAAAATAT+TGG - chr3_3:76456736-76456755 None:intergenic 35.0%
GAAGAGACAAAGAGTAAGTA+TGG - chr3_3:76456774-76456793 None:intergenic 35.0%
CTTAACTGAAAGGAATGTCA+TGG + chr3_3:76456862-76456881 Msa0473720:CDS 35.0%
AGAACGTTACATGTAAACTC+TGG + chr3_3:76456921-76456940 Msa0473720:intron 35.0%
CAACAGATGATGTTGATACA+AGG + chr3_3:76456978-76456997 Msa0473720:intron 35.0%
! AAGTAATTCCTCGTCTGTTT+TGG - chr3_3:76457065-76457084 None:intergenic 35.0%
TTGGTAAGAATGACTATTGG+AGG + chr3_3:76457110-76457129 Msa0473720:intron 35.0%
AATTCAGTGTTGTCAAACTG+CGG + chr3_3:76457161-76457180 Msa0473720:intron 35.0%
! GGCTTATGTTTCTTATTTGC+AGG + chr3_3:76457345-76457364 Msa0473720:intron 35.0%
!! GCAGGTATTGATCTAATAAG+TGG + chr3_3:76457363-76457382 Msa0473720:intron 35.0%
!! CTTACATGGAAAGTATCTCT+AGG - chr3_3:76457462-76457481 None:intergenic 35.0%
GCCTACTGTATAAACTTACA+TGG - chr3_3:76457476-76457495 None:intergenic 35.0%
AAGTTTATACAGTAGGCTGT+TGG + chr3_3:76457479-76457498 Msa0473720:intron 35.0%
AATTCAACAAAAGGGAGTCA+GGG - chr3_3:76457505-76457524 None:intergenic 35.0%
AAATTCAACAAAAGGGAGTC+AGG - chr3_3:76457506-76457525 None:intergenic 35.0%
! GACTCCCTTTTGTTGAATTT+TGG + chr3_3:76457506-76457525 Msa0473720:intron 35.0%
! TAGGTAGTTGCATACGATTT+TGG + chr3_3:76457566-76457585 Msa0473720:intron 35.0%
TTTACTGTTTCAACGGCATA+AGG - chr3_3:76457737-76457756 None:intergenic 35.0%
!!! CCTGTTTTTGGAATTTGCAT+GGG + chr3_3:76457776-76457795 Msa0473720:CDS 35.0%
GTGACCAAATTTCATCTTGT+AGG - chr3_3:76457837-76457856 None:intergenic 35.0%
AAGATGAAATTTGGTCACCA+TGG + chr3_3:76457839-76457858 Msa0473720:CDS 35.0%
CCTGAGAACTAATTTCAACA+CGG - chr3_3:76457898-76457917 None:intergenic 35.0%
TCATCATTTCACCGTAATCA+TGG + chr3_3:76457950-76457969 Msa0473720:intron 35.0%
TGAATTCATTTGGTCTGATG+AGG + chr3_3:76457991-76458010 Msa0473720:intron 35.0%
GAATTCATTTGGTCTGATGA+GGG + chr3_3:76457992-76458011 Msa0473720:intron 35.0%
!!! TGTTGATAATGCAGCTTTTC+GGG + chr3_3:76458793-76458812 Msa0473720:intron 35.0%
!! AGTTGGTGTAGGTTTTCATT+CGG - chr3_3:76458857-76458876 None:intergenic 35.0%
TAGATGAATAAGGACTTCCT+TGG + chr3_3:76458990-76459009 Msa0473720:three_prime_UTR 35.0%
GAAAATCTTGATCAACTCCA+AGG - chr3_3:76459010-76459029 None:intergenic 35.0%
! TTGTGTCCATTTTCTGTACA+AGG + chr3_3:76459030-76459049 Msa0473720:three_prime_UTR 35.0%
! TGTGTCCATTTTCTGTACAA+GGG + chr3_3:76459031-76459050 Msa0473720:three_prime_UTR 35.0%
TAAAAACACAGTTCTCTTCG+CGG - chr3_3:76459121-76459140 None:intergenic 35.0%
TCATCCAATAGGTTTGGATT+GGG - chr3_3:76459246-76459265 None:intergenic 35.0%
TTCATCCAATAGGTTTGGAT+TGG - chr3_3:76459247-76459266 None:intergenic 35.0%
ATGTCTTCATCCAATAGGTT+TGG - chr3_3:76459252-76459271 None:intergenic 35.0%
TCACAACTTTCTTGCAATTG+TGG + chr3_3:76459423-76459442 Msa0473720:three_prime_UTR 35.0%
CACAACTTTCTTGCAATTGT+GGG + chr3_3:76459424-76459443 Msa0473720:three_prime_UTR 35.0%
ACAACTTTCTTGCAATTGTG+GGG + chr3_3:76459425-76459444 Msa0473720:three_prime_UTR 35.0%
! CCTATGTTTTCTCTTCACCT+AGG - chr3_3:76455872-76455891 None:intergenic 40.0%
CCTAGGTGAAGAGAAAACAT+AGG + chr3_3:76455869-76455888 Msa0473720:five_prime_UTR 40.0%
CAAAGAGGTCATTGAGAGAA+AGG - chr3_3:76456009-76456028 None:intergenic 40.0%
CTTTCTCTCAATGACCTCTT+TGG + chr3_3:76456007-76456026 Msa0473720:CDS 40.0%
! GAAGACAGAAACTTTTGCAG+AGG - chr3_3:76456053-76456072 None:intergenic 40.0%
TTCTCTGTCAGATGTTCTTC+TGG + chr3_3:76456070-76456089 Msa0473720:CDS 40.0%
GCTAGACTTGTGTTAGAAGA+TGG + chr3_3:76456264-76456283 Msa0473720:CDS 40.0%
!! GCTAAATCATTTGGTGCTTC+AGG + chr3_3:76456300-76456319 Msa0473720:CDS 40.0%
GATTTGTCATCAGCACAAAC+TGG - chr3_3:76456510-76456529 None:intergenic 40.0%
ATGCCAGTATTCCCAATATG+TGG - chr3_3:76456532-76456551 None:intergenic 40.0%
! GGGAATACTGGCATCAATTT+TGG + chr3_3:76456538-76456557 Msa0473720:CDS 40.0%
AATATCCATCGCAAAGAGAC+AGG - chr3_3:76456796-76456815 None:intergenic 40.0%
TGGAGATGTGTGAAGGATTT+GGG + chr3_3:76456833-76456852 Msa0473720:CDS 40.0%
TGGGCGATTACTTAACTGAA+AGG + chr3_3:76456852-76456871 Msa0473720:CDS 40.0%
CAGTGCTCAAAACACCAATA+AGG - chr3_3:76457036-76457055 None:intergenic 40.0%
TGACAATTCCAAAACAGACG+AGG + chr3_3:76457054-76457073 Msa0473720:intron 40.0%
ACAACTCTGCTGGAATTACA+TGG + chr3_3:76457324-76457343 Msa0473720:intron 40.0%
AACTTCAAAGTTTCGGATGC+TGG - chr3_3:76457662-76457681 None:intergenic 40.0%
! TTGCTGAAAAGTACACCATC+TGG - chr3_3:76457689-76457708 None:intergenic 40.0%
! GATGGTGTACTTTTCAGCAA+TGG + chr3_3:76457689-76457708 Msa0473720:CDS 40.0%
!!! ATTGGAAAGGTGCCTGTTTT+TGG + chr3_3:76457764-76457783 Msa0473720:CDS 40.0%
!!! GCCTGTTTTTGGAATTTGCA+TGG + chr3_3:76457775-76457794 Msa0473720:CDS 40.0%
CCCATGCAAATTCCAAAAAC+AGG - chr3_3:76457779-76457798 None:intergenic 40.0%
ATGAAATTTGGTCACCATGG+AGG + chr3_3:76457842-76457861 Msa0473720:CDS 40.0%
! CCGTGTTGAAATTAGTTCTC+AGG + chr3_3:76457895-76457914 Msa0473720:CDS 40.0%
! TGTCCATGAGTTGACACAAT+GGG - chr3_3:76458199-76458218 None:intergenic 40.0%
! ATGTCCATGAGTTGACACAA+TGG - chr3_3:76458200-76458219 None:intergenic 40.0%
CATGGACATTATTAGACCTG+TGG + chr3_3:76458211-76458230 Msa0473720:intron 40.0%
TGAGTAACTTCTACTCCTTC+AGG - chr3_3:76458460-76458479 None:intergenic 40.0%
! GAGACACAATCTTTTGAGCA+GGG - chr3_3:76458522-76458541 None:intergenic 40.0%
! AGAGACACAATCTTTTGAGC+AGG - chr3_3:76458523-76458542 None:intergenic 40.0%
AGCAGGATTATGTGTCTTGT+AGG + chr3_3:76458685-76458704 Msa0473720:intron 40.0%
TTCGTTCAGCGACTTGAATA+TGG + chr3_3:76458741-76458760 Msa0473720:intron 40.0%
!!! GTAGGTTTTCATTCGGTGTT+TGG - chr3_3:76458850-76458869 None:intergenic 40.0%
CTTTATCCTTCTAGCATGGT+GGG - chr3_3:76458916-76458935 None:intergenic 40.0%
ACTTTATCCTTCTAGCATGG+TGG - chr3_3:76458917-76458936 None:intergenic 40.0%
AATCCCCAATCCAAACCTAT+TGG + chr3_3:76459239-76459258 Msa0473720:three_prime_UTR 40.0%
CATCCAATAGGTTTGGATTG+GGG - chr3_3:76459245-76459264 None:intergenic 40.0%
GCACAATGTCTTCATCCAAT+AGG - chr3_3:76459257-76459276 None:intergenic 40.0%
CAACTTTCTTGCAATTGTGG+GGG + chr3_3:76459426-76459445 Msa0473720:three_prime_UTR 40.0%
ACATAGGTTGCTGCTAACAC+TGG + chr3_3:76455885-76455904 Msa0473720:five_prime_UTR 45.0%
GTCATTGAGAGAAAGGGTGA+AGG - chr3_3:76456002-76456021 None:intergenic 45.0%
! CAATGACCTCTTTGGTTCCA+AGG + chr3_3:76456015-76456034 Msa0473720:CDS 45.0%
!! GAAACTTTTGCAGAGGTGTG+TGG - chr3_3:76456046-76456065 None:intergenic 45.0%
ATGTGTGTGTTCCATTCCTC+AGG + chr3_3:76456449-76456468 Msa0473720:intron 45.0%
ACAAACTGGCCAGCATAACT+AGG - chr3_3:76456496-76456515 None:intergenic 45.0%
TCATTGTCTGACAGATGACG+AGG + chr3_3:76456639-76456658 Msa0473720:intron 45.0%
CTTCACACATCTCCAGTTTG+AGG - chr3_3:76456828-76456847 None:intergenic 45.0%
CTCAAACTGGAGATGTGTGA+AGG + chr3_3:76456826-76456845 Msa0473720:CDS 45.0%
CTGGAGATGTGTGAAGGATT+TGG + chr3_3:76456832-76456851 Msa0473720:CDS 45.0%
GGGCAATCACACGTAGATTA+CGG + chr3_3:76456999-76457018 Msa0473720:CDS 45.0%
GGCAATCACACGTAGATTAC+GGG + chr3_3:76457000-76457019 Msa0473720:CDS 45.0%
ACACGTAGATTACGGGAAGA+TGG + chr3_3:76457007-76457026 Msa0473720:CDS 45.0%
TCTGTGATTGACAACTCTGC+TGG + chr3_3:76457314-76457333 Msa0473720:intron 45.0%
CGTGCAAGTCACCATATGAA+TGG + chr3_3:76457391-76457410 Msa0473720:CDS 45.0%
CTTAGGCGTCTAGCATCATA+TGG + chr3_3:76457605-76457624 Msa0473720:CDS 45.0%
TCACTGTTGTGCCATCTACA+TGG + chr3_3:76457636-76457655 Msa0473720:CDS 45.0%
! GTACTTTTCAGCAATGGTCC+TGG + chr3_3:76457695-76457714 Msa0473720:CDS 45.0%
TGCATGGGACATCAATTGCT+TGG + chr3_3:76457791-76457810 Msa0473720:CDS 45.0%
GAACAGGATGATTTCCTCCA+TGG - chr3_3:76457859-76457878 None:intergenic 45.0%
TTCATTTGGTCTGATGAGGG+AGG + chr3_3:76457995-76458014 Msa0473720:intron 45.0%
TCATTTGGTCTGATGAGGGA+GGG + chr3_3:76457996-76458015 Msa0473720:intron 45.0%
TTCATAGAAGGGTCAGAACC+TGG + chr3_3:76458059-76458078 Msa0473720:intron 45.0%
GGCACTATCATAGTGAGTTC+TGG - chr3_3:76458116-76458135 None:intergenic 45.0%
! TCCATGAGTTGACACAATGG+GGG - chr3_3:76458197-76458216 None:intergenic 45.0%
! GTCCATGAGTTGACACAATG+GGG - chr3_3:76458198-76458217 None:intergenic 45.0%
CTCAATGACAGTAGTTGTGC+CGG + chr3_3:76458487-76458506 Msa0473720:CDS 45.0%
TTGTCAGAATCATGAGGTCC+AGG - chr3_3:76458568-76458587 None:intergenic 45.0%
GGACCTCATGATTCTGACAA+CGG + chr3_3:76458568-76458587 Msa0473720:CDS 45.0%
TCACCGTTGTCAGAATCATG+AGG - chr3_3:76458574-76458593 None:intergenic 45.0%
! ACACTGATTGCAGTTGGTGT+AGG - chr3_3:76458868-76458887 None:intergenic 45.0%
GCTAGCCCTTGTACAGAAAA+TGG - chr3_3:76459039-76459058 None:intergenic 45.0%
CTCGTAGCCTTCATTGAAGA+AGG + chr3_3:76459075-76459094 Msa0473720:three_prime_UTR 45.0%
CATATCCCTTTAGCTGCAAG+TGG + chr3_3:76459400-76459419 Msa0473720:three_prime_UTR 45.0%
TGTGACCACTTGCAGCTAAA+GGG - chr3_3:76459408-76459427 None:intergenic 45.0%
TTGTGACCACTTGCAGCTAA+AGG - chr3_3:76459409-76459428 None:intergenic 45.0%
TTTCTTGCAATTGTGGGGGT+TGG + chr3_3:76459430-76459449 Msa0473720:three_prime_UTR 45.0%
! GGTTGCTGCTAACACTGGTT+TGG + chr3_3:76455890-76455909 Msa0473720:five_prime_UTR 50.0%
!! ACTTTTGCAGAGGTGTGTGG+CGG - chr3_3:76456043-76456062 None:intergenic 50.0%
!! TAGGTAATGGGGAAAGGCCA+TGG + chr3_3:76456229-76456248 Msa0473720:intron 50.0%
TCAGCACAGTGCTTCCTTTC+CGG + chr3_3:76456664-76456683 Msa0473720:CDS 50.0%
CTCTTCCTGTCTCTTTGCGA+TGG + chr3_3:76456788-76456807 Msa0473720:intron 50.0%
! TGGGAGTTTAGCTCCAGTGA+AGG + chr3_3:76457435-76457454 Msa0473720:CDS 50.0%
! GGGAGTTTAGCTCCAGTGAA+GGG + chr3_3:76457436-76457455 Msa0473720:CDS 50.0%
AGTATCTCTAGGCCCTTCAC+TGG - chr3_3:76457451-76457470 None:intergenic 50.0%
ACGGCATAAGGAACAGCAGA+AGG - chr3_3:76457725-76457744 None:intergenic 50.0%
CAATTGCTTGGCCAGGCTTT+AGG + chr3_3:76457803-76457822 Msa0473720:CDS 50.0%
AGGTTGTACCTCCTAAAGCC+TGG - chr3_3:76457817-76457836 None:intergenic 50.0%
CCAGTTCGAAGGTTACGAAC+AGG - chr3_3:76457875-76457894 None:intergenic 50.0%
CCTGTTCGTAACCTTCGAAC+TGG + chr3_3:76457872-76457891 Msa0473720:CDS 50.0%
TTTCAACACGGCCAGTTCGA+AGG - chr3_3:76457886-76457905 None:intergenic 50.0%
TCTTCTCAAGACAAGGGACC+AGG - chr3_3:76458080-76458099 None:intergenic 50.0%
! CTCACTATGATAGTGCCTCG+TGG + chr3_3:76458119-76458138 Msa0473720:intron 50.0%
TGGGGGGATAACAGAACTGA+GGG - chr3_3:76458180-76458199 None:intergenic 50.0%
ATGGGGGGATAACAGAACTG+AGG - chr3_3:76458181-76458200 None:intergenic 50.0%
! CCATGAGTTGACACAATGGG+GGG - chr3_3:76458196-76458215 None:intergenic 50.0%
CAGGGTCAACTGCATAGTTG+TGG - chr3_3:76458429-76458448 None:intergenic 50.0%
TTCTACTCCTTCAGGCAGTG+TGG - chr3_3:76458452-76458471 None:intergenic 50.0%
TTGAGCAGGGAAAGCAAGAC+CGG - chr3_3:76458509-76458528 None:intergenic 50.0%
TGCTATCCCACCATGCTAGA+AGG + chr3_3:76458907-76458926 Msa0473720:three_prime_UTR 50.0%
TTGCAATTGTGGGGGTTGGA+TGG + chr3_3:76459434-76459453 Msa0473720:three_prime_UTR 50.0%
TGCAATTGTGGGGGTTGGAT+GGG + chr3_3:76459435-76459454 Msa0473720:three_prime_UTR 50.0%
GGTGCTTCAGGAACCCAAGT+TGG + chr3_3:76456312-76456331 Msa0473720:CDS 55.0%
! CGGGAAGATGGCAGCCTTAT+TGG + chr3_3:76457019-76457038 Msa0473720:CDS 55.0%
TCGGATGCTGGCCATGTAGA+TGG - chr3_3:76457650-76457669 None:intergenic 55.0%
GGAACAGCAGAAGGATCTCC+AGG - chr3_3:76457716-76457735 None:intergenic 55.0%
GGGACATCAATTGCTTGGCC+AGG + chr3_3:76457796-76457815 Msa0473720:CDS 55.0%
!! TTGCTTGGCCAGGCTTTAGG+AGG + chr3_3:76457806-76457825 Msa0473720:CDS 55.0%
CCCCCCATTGTGTCAACTCA+TGG + chr3_3:76458193-76458212 Msa0473720:intron 55.0%
! TACCACCCTGAAGCATCTCC+TGG + chr3_3:76458547-76458566 Msa0473720:CDS 55.0%
GAGGTCCAGGAGATGCTTCA+GGG - chr3_3:76458555-76458574 None:intergenic 55.0%
TGAGGTCCAGGAGATGCTTC+AGG - chr3_3:76458556-76458575 None:intergenic 55.0%
! TACAAGGGCTAGCAGCCGAT+TGG + chr3_3:76459046-76459065 Msa0473720:three_prime_UTR 55.0%
GGCTACGAGCCTATGCCAAT+CGG - chr3_3:76459064-76459083 None:intergenic 55.0%
GCAATTGTGGGGGTTGGATG+GGG + chr3_3:76459436-76459455 Msa0473720:three_prime_UTR 55.0%
ACTGCGGCACTATAGCGCAG+CGG + chr3_3:76457177-76457196 Msa0473720:intron 60.0%
CTCCTTCAGGCAGTGTGGCA+GGG - chr3_3:76458447-76458466 None:intergenic 60.0%
ACTCCTTCAGGCAGTGTGGC+AGG - chr3_3:76458448-76458467 None:intergenic 60.0%
GTCCAGGAGATGCTTCAGGG+TGG - chr3_3:76458552-76458571 None:intergenic 60.0%
GGCTAGCAGCCGATTGGCAT+AGG + chr3_3:76459052-76459071 Msa0473720:three_prime_UTR 60.0%
GCGGCGCCTTGGAACCAAAG+AGG - chr3_3:76456024-76456043 None:intergenic 65.0%
GACCCTGCCACACTGCCTGA+AGG + chr3_3:76458442-76458461 Msa0473720:CDS 65.0%
! AGAGGTGTGTGGCGGCGCCT+TGG - chr3_3:76456035-76456054 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 76455850 76459476 76455850 ID=Msa0473720;Name=Msa0473720
chr3_3 mRNA 76455850 76459476 76455850 ID=Msa0473720-mRNA-1;Parent=Msa0473720;Name=Msa0473720-mRNA-1;_AED=0.10;_eAED=0.10;_QI=130|0.88|0.8|1|1|1|10|587|401
chr3_3 exon 76455850 76456091 76455850 ID=Msa0473720-mRNA-1:exon:19975;Parent=Msa0473720-mRNA-1
chr3_3 exon 76456232 76456364 76456232 ID=Msa0473720-mRNA-1:exon:19976;Parent=Msa0473720-mRNA-1
chr3_3 exon 76456471 76456559 76456471 ID=Msa0473720-mRNA-1:exon:19977;Parent=Msa0473720-mRNA-1
chr3_3 exon 76456653 76456713 76456653 ID=Msa0473720-mRNA-1:exon:19978;Parent=Msa0473720-mRNA-1
chr3_3 exon 76456823 76456890 76456823 ID=Msa0473720-mRNA-1:exon:19979;Parent=Msa0473720-mRNA-1
chr3_3 exon 76456984 76457040 76456984 ID=Msa0473720-mRNA-1:exon:19980;Parent=Msa0473720-mRNA-1
chr3_3 exon 76457388 76457476 76457388 ID=Msa0473720-mRNA-1:exon:19981;Parent=Msa0473720-mRNA-1
chr3_3 exon 76457569 76457916 76457569 ID=Msa0473720-mRNA-1:exon:19982;Parent=Msa0473720-mRNA-1
chr3_3 exon 76458424 76458589 76458424 ID=Msa0473720-mRNA-1:exon:19983;Parent=Msa0473720-mRNA-1
chr3_3 exon 76458807 76459476 76458807 ID=Msa0473720-mRNA-1:exon:19984;Parent=Msa0473720-mRNA-1
chr3_3 five_prime_UTR 76455850 76455979 76455850 ID=Msa0473720-mRNA-1:five_prime_utr;Parent=Msa0473720-mRNA-1
chr3_3 CDS 76455980 76456091 76455980 ID=Msa0473720-mRNA-1:cds;Parent=Msa0473720-mRNA-1
chr3_3 CDS 76456232 76456364 76456232 ID=Msa0473720-mRNA-1:cds;Parent=Msa0473720-mRNA-1
chr3_3 CDS 76456471 76456559 76456471 ID=Msa0473720-mRNA-1:cds;Parent=Msa0473720-mRNA-1
chr3_3 CDS 76456653 76456713 76456653 ID=Msa0473720-mRNA-1:cds;Parent=Msa0473720-mRNA-1
chr3_3 CDS 76456823 76456890 76456823 ID=Msa0473720-mRNA-1:cds;Parent=Msa0473720-mRNA-1
chr3_3 CDS 76456984 76457040 76456984 ID=Msa0473720-mRNA-1:cds;Parent=Msa0473720-mRNA-1
chr3_3 CDS 76457388 76457476 76457388 ID=Msa0473720-mRNA-1:cds;Parent=Msa0473720-mRNA-1
chr3_3 CDS 76457569 76457916 76457569 ID=Msa0473720-mRNA-1:cds;Parent=Msa0473720-mRNA-1
chr3_3 CDS 76458424 76458589 76458424 ID=Msa0473720-mRNA-1:cds;Parent=Msa0473720-mRNA-1
chr3_3 CDS 76458807 76458889 76458807 ID=Msa0473720-mRNA-1:cds;Parent=Msa0473720-mRNA-1
chr3_3 three_prime_UTR 76458890 76459476 76458890 ID=Msa0473720-mRNA-1:three_prime_utr;Parent=Msa0473720-mRNA-1
Gene Sequence

>Msa0473720

ATGGCAACAAAAGCTTTGGCCTTCACCCTTTCTCTCAATGACCTCTTTGGTTCCAAGGCGCCGCCACACACCTCTGCAAAAGTTTCTGTCTTCTCTGTCAGATGTTCTTCTGGTAATGGGGAAAGGCCATGGAAAAATTCAGATGCTAGACTTGTGTTAGAAGATGGTTCAATTTGGAAAGCTAAATCATTTGGTGCTTCAGGAACCCAAGTTGGTGAAGTTGTTTTCAATACATCATTGACTGGGTATCAAGAAATTTTAACTGATCCTAGTTATGCTGGCCAGTTTGTGCTGATGACAAATCCACATATTGGGAATACTGGCATCAATTTTGATGACGAGGAATCAGCACAGTGCTTCCTTTCCGGTTTAGTAATTAGAAGTTTGAGTATCAGTACCTCAAACTGGAGATGTGTGAAGGATTTGGGCGATTACTTAACTGAAAGGAATGTCATGGGAATTTATGATGTTGATACAAGGGCAATCACACGTAGATTACGGGAAGATGGCAGCCTTATTGTATCGTGCAAGTCACCATATGAATGGATTGATAGAACAAAGGAAGAATGGGAGTTTAGCTCCAGTGAAGGGCCTAGAGATACTTTCCATGTAGTTGCATACGATTTTGGAATCAAGCATAATATACTTAGGCGTCTAGCATCATATGGCTGTAAAATCACTGTTGTGCCATCTACATGGCCAGCATCCGAAACTTTGAAGTTATATCCAGATGGTGTACTTTTCAGCAATGGTCCTGGAGATCCTTCTGCTGTTCCTTATGCCGTTGAAACAGTAAAGAATATCATTGGAAAGGTGCCTGTTTTTGGAATTTGCATGGGACATCAATTGCTTGGCCAGGCTTTAGGAGGTACAACCTACAAGATGAAATTTGGTCACCATGGAGGAAATCATCCTGTTCGTAACCTTCGAACTGGCCGTGTTGAAATTAGTTCTCAGAACCACAACTATGCAGTTGACCCTGCCACACTGCCTGAAGGAGTAGAAGTTACTCATATCAATCTCAATGACAGTAGTTGTGCCGGTCTTGCTTTCCCTGCTCAAAAGATTGTGTCTCTTCAATACCACCCTGAAGCATCTCCTGGACCTCATGATTCTGACAACGCTTTTCGGGAGTTTATAGAGCTAATGAAGCATGAGAAAAACCAAACACCGAATGAAAACCTACACCAACTGCAATCAGTGTAA
Protein sequence

>Msa0473720

MATKALAFTLSLNDLFGSKAPPHTSAKVSVFSVRCSSGNGERPWKNSDARLVLEDGSIWKAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGINFDDEESAQCFLSGLVIRSLSISTSNWRCVKDLGDYLTERNVMGIYDVDTRAITRRLREDGSLIVSCKSPYEWIDRTKEEWEFSSSEGPRDTFHVVAYDFGIKHNILRRLASYGCKITVVPSTWPASETLKLYPDGVLFSNGPGDPSAVPYAVETVKNIIGKVPVFGICMGHQLLGQALGGTTYKMKFGHHGGNHPVRNLRTGRVEISSQNHNYAVDPATLPEGVEVTHINLNDSSCAGLAFPAQKIVSLQYHPEASPGPHDSDNAFREFIELMKHEKNQTPNENLHQLQSV*