Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0986020 | XP_003619170.1 | 59.542 | 131 | 44 | 2 | 57 | 183 | 98 | 223 | 1.10e-25 | 128 |
| Msa0986020 | XP_003619170.1 | 76.415 | 1060 | 182 | 9 | 1 | 1037 | 164 | 1178 | 0.0 | 1548 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0986020 | G7KIZ3 | 59.542 | 131 | 44 | 2 | 57 | 183 | 98 | 223 | 5.27e-26 | 128 |
| Msa0986020 | G7KIZ3 | 76.415 | 1060 | 182 | 9 | 1 | 1037 | 164 | 1178 | 0.0 | 1548 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0986020 | Msa1361400 | 0.805860 | 1.088491e-49 | -8.615850e-47 |
| Msa0861510 | Msa0986020 | 0.814611 | 1.410553e-51 | -8.615850e-47 |
| Msa0861530 | Msa0986020 | 0.801720 | 7.880675e-49 | -8.615850e-47 |
| Msa0861600 | Msa0986020 | 0.802595 | 5.208251e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0986020 | MtrunA17_Chr6g0464491 | 76.415 | 1060 | 182 | 9 | 1 | 1037 | 164 | 1178 | 0.0 | 1548 |
| Msa0986020 | MtrunA17_Chr6g0464491 | 59.542 | 131 | 44 | 2 | 57 | 183 | 98 | 223 | 1.02e-29 | 128 |
| Msa0986020 | MtrunA17_Chr6g0464501 | 56.886 | 167 | 64 | 1 | 199 | 357 | 3 | 169 | 4.83e-46 | 169 |
| Msa0986020 | MtrunA17_Chr6g0464501 | 48.701 | 154 | 58 | 5 | 237 | 380 | 165 | 307 | 1.21e-25 | 110 |
| Msa0986020 | MtrunA17_Chr6g0464501 | 38.150 | 173 | 84 | 4 | 462 | 611 | 9 | 181 | 1.94e-15 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 199 sgRNAs with CRISPR-Local
Find 299 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTTGGATTAACATTTA+AGG | 0.148399 | 6_4:+33583234 | None:intergenic |
| GGTTGAACAAATTCAAAATT+TGG | 0.160084 | 6_4:-33583197 | Msa0986020:CDS |
| GCATACTAAAGTTTATATTT+TGG | 0.175084 | 6_4:-33579438 | Msa0986020:three_prime_UTR |
| AATCTTCTACATGATGCTTT+AGG | 0.183296 | 6_4:-33581339 | Msa0986020:CDS |
| AATCTCAGAAATTGTGGATT+TGG | 0.213811 | 6_4:-33581645 | Msa0986020:CDS |
| ACAACATCTCCAAGTGTATT+TGG | 0.216649 | 6_4:+33580494 | None:intergenic |
| CTGGCTGCTTCCGAAGAATT+TGG | 0.235282 | 6_4:-33581486 | Msa0986020:CDS |
| GTTGAAGCTTCAAATTTATT+AGG | 0.243957 | 6_4:+33580551 | None:intergenic |
| TGATCTTGCTCTTCACAAAA+TGG | 0.258843 | 6_4:-33582098 | Msa0986020:CDS |
| ATTTCAACTTAGACTCTTCT+AGG | 0.261811 | 6_4:+33583524 | None:intergenic |
| GTTGAAGATGTTTCTGAAAC+TGG | 0.275759 | 6_4:-33581834 | Msa0986020:CDS |
| GGTTGAACAACTTCACAAAT+TGG | 0.277541 | 6_4:-33582308 | Msa0986020:CDS |
| ATCTTCTACATGATGCTTTA+GGG | 0.280989 | 6_4:-33581338 | Msa0986020:CDS |
| TCAGTCTGATTCAGAAGAAT+TGG | 0.285796 | 6_4:-33582482 | Msa0986020:CDS |
| CATGTCTTCAACAGTTAAAT+TGG | 0.309153 | 6_4:+33582204 | None:intergenic |
| TGATTTATAGAAACTGCTTC+TGG | 0.321178 | 6_4:-33579847 | Msa0986020:intron |
| AAAATTATGCATTGTGGATC+TGG | 0.332469 | 6_4:-33581270 | Msa0986020:CDS |
| TCCGATCACAAGGTTGATTC+AGG | 0.334413 | 6_4:-33583876 | Msa0986020:intron |
| CATGCTTTCTTGTACGTTAA+CGG | 0.335824 | 6_4:+33584118 | None:intergenic |
| CTTTCTTCTGAATCACTTGC+TGG | 0.336980 | 6_4:+33582601 | None:intergenic |
| CAACACTACATATACTAAAA+AGG | 0.353543 | 6_4:+33579661 | None:intergenic |
| TCATTGACACCAAGAGATAT+TGG | 0.361397 | 6_4:-33582736 | Msa0986020:CDS |
| GAACGTCCACTGGATTCCTT+TGG | 0.362156 | 6_4:+33583220 | None:intergenic |
| ATCAAGTGATGATGCAAATA+TGG | 0.366597 | 6_4:-33584039 | Msa0986020:CDS |
| ATCATGTTACTATTATTTGA+TGG | 0.368375 | 6_4:-33579613 | Msa0986020:three_prime_UTR |
| TGGAGTGAAGTTTGAATCTT+CGG | 0.383986 | 6_4:-33582800 | Msa0986020:CDS |
| CACGATCTATTTGTGACAAC+TGG | 0.386125 | 6_4:-33581105 | Msa0986020:CDS |
| CCGGCATTGGAGAAATTGAT+TGG | 0.389163 | 6_4:-33582760 | Msa0986020:CDS |
| CATACCGATTGGTGTTAATC+AGG | 0.390812 | 6_4:-33582692 | Msa0986020:CDS |
| TCTCCATGACAGATCCTTGA+TGG | 0.391691 | 6_4:+33583266 | None:intergenic |
| ATGTTCTCTTTATGTATCAT+TGG | 0.392882 | 6_4:+33579775 | None:intergenic |
| ACAAAGTGTAGATGACAATA+TGG | 0.395599 | 6_4:-33583395 | Msa0986020:CDS |
| CTTCAAGATGTTTGTGGAAG+TGG | 0.396733 | 6_4:-33582409 | Msa0986020:CDS |
| CCACCGGAGAAACATGTAAA+AGG | 0.397845 | 6_4:+33581739 | None:intergenic |
| CATGCAAATGAGGGTCAATA+AGG | 0.399534 | 6_4:-33584099 | Msa0986020:CDS |
| GGAGAAAACTGAAGAAAATC+AGG | 0.408840 | 6_4:-33583434 | Msa0986020:CDS |
| TACACTTGGAGATGTTGTTA+TGG | 0.410180 | 6_4:-33580489 | Msa0986020:CDS |
| TTAGCAACAACTGATTCATC+AGG | 0.411747 | 6_4:+33581213 | None:intergenic |
| TTATGATTTATGATGACTAT+TGG | 0.413745 | 6_4:-33579567 | Msa0986020:three_prime_UTR |
| CATTTACGATTGACCGTTGA+GGG | 0.414751 | 6_4:+33581367 | None:intergenic |
| ACTTATCCCATGGCAGCATT+AGG | 0.415719 | 6_4:-33581063 | Msa0986020:intron |
| TGATCTCGATGTTCACGAAT+TGG | 0.418240 | 6_4:-33582978 | Msa0986020:CDS |
| TTCTGCATTCCAACCTTCAC+CGG | 0.418312 | 6_4:+33582543 | None:intergenic |
| GGTGGAATCGAGTTCACCTT+TGG | 0.419826 | 6_4:-33581721 | Msa0986020:CDS |
| GATCCAATGCCATCTCCTTC+AGG | 0.420590 | 6_4:+33583496 | None:intergenic |
| ATCATTGGTGTAGCCTTTGA+TGG | 0.420869 | 6_4:+33579790 | None:intergenic |
| GGAGTAGTTAAAATTTGATC+TGG | 0.429336 | 6_4:+33583915 | None:intergenic |
| TTGTTCAACCGAACGTCCAC+TGG | 0.437988 | 6_4:+33583210 | None:intergenic |
| AACTCCATTTGATTAGTTTG+AGG | 0.440380 | 6_4:+33580272 | None:intergenic |
| CCAATCAATTTCTCCAATGC+CGG | 0.450617 | 6_4:+33582760 | None:intergenic |
| GAACATTAAATTTGACAAGA+AGG | 0.452593 | 6_4:-33579758 | Msa0986020:CDS |
| AATGGAATCGAGTGGCCGTT+TGG | 0.453516 | 6_4:-33582329 | Msa0986020:CDS |
| CTCGTCTCTACTTCATTAGA+TGG | 0.455640 | 6_4:+33583001 | None:intergenic |
| TGCTCCTGATTAACACCAAT+CGG | 0.458175 | 6_4:+33582688 | None:intergenic |
| ACTTCACGTAATGGATCAAT+TGG | 0.458948 | 6_4:+33582130 | None:intergenic |
| CTTGGTGCATGACTCTCATA+TGG | 0.459254 | 6_4:+33581540 | None:intergenic |
| GATGAGTATTGCCCCGGCAT+TGG | 0.461092 | 6_4:-33582773 | Msa0986020:CDS |
| CATGATGGTATTGGTGGAGT+TGG | 0.464433 | 6_4:-33580371 | Msa0986020:CDS |
| TCATCTACACTTTGTGATGC+AGG | 0.465248 | 6_4:+33583403 | None:intergenic |
| CTGATACGGTGAGCCGGAAA+AGG | 0.465607 | 6_4:-33580328 | Msa0986020:CDS |
| AGTGCCTCAAACTAATCAAA+TGG | 0.468079 | 6_4:-33580276 | Msa0986020:CDS |
| CCACACCTGTTGATGCATCA+AGG | 0.468546 | 6_4:+33583134 | None:intergenic |
| TCGGACTTGACTTCACTTAG+TGG | 0.469943 | 6_4:+33583894 | None:intergenic |
| CAATATACCTAATGCTGCCA+TGG | 0.473981 | 6_4:+33581056 | None:intergenic |
| ATAGATCTTCAAGATGTTTG+TGG | 0.476525 | 6_4:-33582415 | Msa0986020:CDS |
| AAAGGAATCCAGTGGACGTT+CGG | 0.477768 | 6_4:-33583218 | Msa0986020:CDS |
| ATGATCATGGTCAAGAGAAA+AGG | 0.481193 | 6_4:-33582663 | Msa0986020:CDS |
| AATGGAGAAGGTAAACAGTC+AGG | 0.481800 | 6_4:-33580429 | Msa0986020:CDS |
| CAGTCTGATTCAGAAGAATT+GGG | 0.488307 | 6_4:-33582481 | Msa0986020:CDS |
| CAATCAATTTCTCCAATGCC+GGG | 0.489178 | 6_4:+33582761 | None:intergenic |
| GATTCAAACTTCACTCCACT+TGG | 0.489323 | 6_4:+33582805 | None:intergenic |
| GTTTGCCTTGATGCATCAAC+CGG | 0.490331 | 6_4:-33582250 | Msa0986020:CDS |
| TGTGAAGTTGTTCAACCAAA+CGG | 0.496287 | 6_4:+33582314 | None:intergenic |
| ATCAATCTGATACGGTGAGC+CGG | 0.499907 | 6_4:-33580334 | Msa0986020:CDS |
| TCAGTAGGCAGAACTTGAAC+TGG | 0.500216 | 6_4:+33583025 | None:intergenic |
| GAATCGAGTTCACCTTTGGT+TGG | 0.501916 | 6_4:-33581717 | Msa0986020:CDS |
| TTTGACAAGAAGGATGAAGT+TGG | 0.502927 | 6_4:-33579748 | Msa0986020:CDS |
| TCACAAACTCCAATATCTCT+TGG | 0.503473 | 6_4:+33582727 | None:intergenic |
| GACTTCAATCTCAGAAATTG+TGG | 0.504654 | 6_4:-33581651 | Msa0986020:CDS |
| CTAGGAATAAATTTGCTAAG+AGG | 0.506638 | 6_4:-33579714 | Msa0986020:CDS |
| TACAAGAAAGCATGCAAATG+AGG | 0.508983 | 6_4:-33584109 | Msa0986020:exon |
| TCGAGTTCACCTTTGGTTGG+AGG | 0.512627 | 6_4:-33581714 | Msa0986020:CDS |
| GGAGGAAGAAGTGGCGGACA+TGG | 0.513144 | 6_4:-33581874 | Msa0986020:CDS |
| TCATCTGATAATTTAACACT+TGG | 0.513510 | 6_4:+33581522 | None:intergenic |
| AGATGCTTATCAAAAGAAGT+TGG | 0.513921 | 6_4:-33579818 | Msa0986020:CDS |
| CATGCTTTCCTCTACGTCAA+CGG | 0.513947 | 6_4:+33583474 | None:intergenic |
| TTCCTTAAATGTTAATCCAA+AGG | 0.514317 | 6_4:-33583236 | Msa0986020:CDS |
| CGGTGAGCCGGAAAAGGAAA+AGG | 0.515073 | 6_4:-33580322 | Msa0986020:CDS |
| ACATTGATCCCGGTGAAGGT+TGG | 0.515644 | 6_4:-33582552 | Msa0986020:CDS |
| ATGTGCCTTGATGCATCAAC+AGG | 0.518671 | 6_4:-33583139 | Msa0986020:CDS |
| GTTGTTGCTAAGAATACTGA+TGG | 0.519054 | 6_4:-33581201 | Msa0986020:CDS |
| TCGCACCGGTTGATGCATCA+AGG | 0.519654 | 6_4:+33582245 | None:intergenic |
| GACGATAATGTTGTGCACTC+TGG | 0.521848 | 6_4:-33581675 | Msa0986020:CDS |
| TTAGCCTCAACTTCACGTAA+TGG | 0.522585 | 6_4:+33582121 | None:intergenic |
| GATGTTCATGATGGTATTGG+TGG | 0.524467 | 6_4:-33580377 | Msa0986020:CDS |
| TGCAGATTCAAGCAGTGTAA+AGG | 0.525971 | 6_4:-33581928 | Msa0986020:intron |
| GAAAATCCAATGCACTCCTC+AGG | 0.526183 | 6_4:+33580575 | None:intergenic |
| TGATAAATCCATTGCTGCCG+AGG | 0.526272 | 6_4:-33581601 | Msa0986020:CDS |
| TCTGATGTTCATGATGGTAT+TGG | 0.526349 | 6_4:-33580380 | Msa0986020:CDS |
| ATCATCAGAAAAGACATGTA+TGG | 0.528912 | 6_4:-33580606 | Msa0986020:CDS |
| AGCCACATCAGTATTCTCAT+TGG | 0.530233 | 6_4:+33583105 | None:intergenic |
| AGATGATGATGATCTTGTAC+TGG | 0.532777 | 6_4:-33581505 | Msa0986020:CDS |
| GAAGTTGGACTCACCATCAA+AGG | 0.533643 | 6_4:-33579803 | Msa0986020:CDS |
| AAGTTGGATCAGTGATGTCT+AGG | 0.533943 | 6_4:-33579732 | Msa0986020:CDS |
| TTTCACAGTCATCTTCAAGA+AGG | 0.535875 | 6_4:+33581436 | None:intergenic |
| AGACGCTGACTTTACTTCGC+AGG | 0.536096 | 6_4:+33583567 | None:intergenic |
| TCGCTCATGTCAACTGCACT+AGG | 0.536800 | 6_4:+33582520 | None:intergenic |
| AAAGACAAGTGATGGTATAG+AGG | 0.537293 | 6_4:-33584183 | Msa0986020:five_prime_UTR |
| CCGCCTGAAGGAGATGGCAT+TGG | 0.543529 | 6_4:-33583499 | Msa0986020:CDS |
| GATCAGAATAATATCCATCA+AGG | 0.545972 | 6_4:-33583280 | Msa0986020:CDS |
| TGATAAGAATTGTGTTCTAT+CGG | 0.546098 | 6_4:-33582284 | Msa0986020:CDS |
| TATCCCTCATGTTTCTCCAA+TGG | 0.547090 | 6_4:-33582347 | Msa0986020:CDS |
| ACCTGAATCAACCTTGTGAT+CGG | 0.548156 | 6_4:+33583875 | None:intergenic |
| AGAGGGACAAGTTGCAAACA+TGG | 0.548745 | 6_4:-33582446 | Msa0986020:CDS |
| ATCAGTATCCTCGGCAGCAA+TGG | 0.549143 | 6_4:+33581593 | None:intergenic |
| TGATTCATCAGGGAAACAAA+AGG | 0.549353 | 6_4:+33581224 | None:intergenic |
| TTCTAGTAGTACTTATCCCA+TGG | 0.550004 | 6_4:-33581073 | Msa0986020:CDS |
| TGTAGATTACTTAGCATAGT+GGG | 0.551503 | 6_4:+33582628 | None:intergenic |
| TGTAGATGACAATATGGTGA+AGG | 0.552510 | 6_4:-33583389 | Msa0986020:CDS |
| TCTTCTACATGATGCTTTAG+GGG | 0.555015 | 6_4:-33581337 | Msa0986020:CDS |
| GGAAAAGATGAGTATTGCCC+CGG | 0.555069 | 6_4:-33582779 | Msa0986020:CDS |
| GCAGATCCTGAGGAGTGCAT+TGG | 0.556026 | 6_4:-33580581 | Msa0986020:CDS |
| AGAACAAAATCAATCTGATA+CGG | 0.557315 | 6_4:-33580342 | Msa0986020:CDS |
| TCTGCATTCCAACCTTCACC+GGG | 0.560515 | 6_4:+33582544 | None:intergenic |
| TTGGGTAATGATTTGACAGA+GGG | 0.564430 | 6_4:-33582463 | Msa0986020:CDS |
| AAATCACCGCCTGAAGGAGA+TGG | 0.564614 | 6_4:-33583505 | Msa0986020:CDS |
| TCACGTAATGGATCAATTGG+CGG | 0.564683 | 6_4:+33582133 | None:intergenic |
| TGAACTTGTCCTCCAACCAA+AGG | 0.565961 | 6_4:+33581705 | None:intergenic |
| GAGAACTCTGATGTTCATGA+TGG | 0.566348 | 6_4:-33580386 | Msa0986020:CDS |
| AAACGGCCACTCGATTCCAT+TGG | 0.567204 | 6_4:+33582331 | None:intergenic |
| TCTCAGCATCTCTTCTTCAC+AGG | 0.567425 | 6_4:+33580628 | None:intergenic |
| CTGTAGATTACTTAGCATAG+TGG | 0.567479 | 6_4:+33582627 | None:intergenic |
| AAGGTAAACAGTCAGGGAGA+AGG | 0.567687 | 6_4:-33580422 | Msa0986020:CDS |
| GATGTTTGTGGAAGTGGCAA+CGG | 0.570005 | 6_4:-33582403 | Msa0986020:CDS |
| CCATCTGAAGGAGATGACAT+TGG | 0.570075 | 6_4:-33584143 | Msa0986020:five_prime_UTR |
| AATCAGGAGCAAGATGATCA+TGG | 0.571394 | 6_4:-33582676 | Msa0986020:CDS |
| TCAAGTGTTCAATATTCAGA+TGG | 0.571714 | 6_4:-33581132 | Msa0986020:CDS |
| TGATTTGATGGAGGAAGAAG+TGG | 0.576728 | 6_4:-33581883 | Msa0986020:CDS |
| ACTTCATTAGATGGATCAGT+AGG | 0.577791 | 6_4:+33583010 | None:intergenic |
| GGTAGCATCGATAACCCTCA+TGG | 0.579607 | 6_4:-33581783 | Msa0986020:CDS |
| TTCTGCTTAAGATCTTGAAG+AGG | 0.580284 | 6_4:+33579688 | None:intergenic |
| CAAGTTGCAAACATGGATAA+CGG | 0.581241 | 6_4:-33582439 | Msa0986020:CDS |
| TTCAACTAATAAAGATTATG+CGG | 0.581971 | 6_4:-33580534 | Msa0986020:CDS |
| CATTGGATCCGTTGACGTAG+AGG | 0.584813 | 6_4:-33583482 | Msa0986020:CDS |
| GTTCACGAATTGGTTGTCAC+AGG | 0.585628 | 6_4:-33582968 | Msa0986020:intron |
| TGATCCATTACGTGAAGTTG+AGG | 0.585881 | 6_4:-33582125 | Msa0986020:CDS |
| GAGAACATTGATCCCGGTGA+AGG | 0.586307 | 6_4:-33582556 | Msa0986020:CDS |
| CTTCACAAAATGGTTGCCAC+AGG | 0.587519 | 6_4:-33582088 | Msa0986020:intron |
| AATTGCTAATGATTTGATGG+AGG | 0.588044 | 6_4:-33581892 | Msa0986020:CDS |
| AATATACCTAATGCTGCCAT+GGG | 0.590333 | 6_4:+33581057 | None:intergenic |
| TATCCATCAAGGATCTGTCA+TGG | 0.591219 | 6_4:-33583269 | Msa0986020:CDS |
| AGCAATGAAGCTATAAAGCA+AGG | 0.592478 | 6_4:-33581804 | Msa0986020:CDS |
| GATGAAGCTCTAAATTCAAG+TGG | 0.593816 | 6_4:-33581399 | Msa0986020:CDS |
| TCTTCGCAAAAGACAAGTGA+TGG | 0.593961 | 6_4:-33584191 | Msa0986020:five_prime_UTR |
| TATTGGAGTTTGTGATGTGG+AGG | 0.594083 | 6_4:-33582719 | Msa0986020:CDS |
| CCAATGTCATCTCCTTCAGA+TGG | 0.594368 | 6_4:+33584143 | None:intergenic |
| ATGGAGAAGGTAAACAGTCA+GGG | 0.600418 | 6_4:-33580428 | Msa0986020:CDS |
| AATAAAGAGAACATTGATCC+CGG | 0.603294 | 6_4:-33582562 | Msa0986020:CDS |
| GTAGATGACAATATGGTGAA+GGG | 0.603708 | 6_4:-33583388 | Msa0986020:CDS |
| CGTTGACGTAGAGGAAAGCA+TGG | 0.606011 | 6_4:-33583473 | Msa0986020:CDS |
| GCAAATCGACACAATGGAGA+AGG | 0.607396 | 6_4:-33580441 | Msa0986020:CDS |
| GGATGATAATAATTGTGTGA+TGG | 0.607729 | 6_4:-33583176 | Msa0986020:CDS |
| CATGGAAATGAATGTTGATG+AGG | 0.608948 | 6_4:-33583455 | Msa0986020:CDS |
| TGAAGTCAAGTCCGATCACA+AGG | 0.609046 | 6_4:-33583886 | Msa0986020:CDS |
| ACAAGAAAGCATGCAAATGA+GGG | 0.609378 | 6_4:-33584108 | Msa0986020:exon |
| AAGGTTCATGAAGATTCTAG+TGG | 0.609440 | 6_4:-33583337 | Msa0986020:CDS |
| TAGCAACAACTGATTCATCA+GGG | 0.613947 | 6_4:+33581214 | None:intergenic |
| AAGTTGAACTCACCATCTGA+AGG | 0.615580 | 6_4:-33584155 | Msa0986020:five_prime_UTR |
| TGTTTACATTCGATCCATGA+GGG | 0.619237 | 6_4:+33581769 | None:intergenic |
| AAGTTGAAATCACCGCCTGA+AGG | 0.620162 | 6_4:-33583511 | Msa0986020:CDS |
| ATGTGAAATGTACAATATTG+TGG | 0.624973 | 6_4:-33579470 | Msa0986020:three_prime_UTR |
| AGATATTGGAGTTTGTGATG+TGG | 0.625028 | 6_4:-33582722 | Msa0986020:CDS |
| AAAGGTGAACTCGATTCCAC+CGG | 0.634974 | 6_4:+33581723 | None:intergenic |
| GATTCCATTGGAGAAACATG+AGG | 0.635167 | 6_4:+33582343 | None:intergenic |
| TCATTTACGATTGACCGTTG+AGG | 0.636536 | 6_4:+33581366 | None:intergenic |
| TCTTCACGAAAGATAAGTCA+AGG | 0.636720 | 6_4:-33583547 | Msa0986020:CDS |
| ATGTATGGTTGCAGATCCTG+AGG | 0.640708 | 6_4:-33580591 | Msa0986020:CDS |
| TCATGGTCAAGAGAAAAGGA+TGG | 0.641745 | 6_4:-33582659 | Msa0986020:CDS |
| GTTAATCCAAAGGAATCCAG+TGG | 0.643103 | 6_4:-33583226 | Msa0986020:CDS |
| GTGGCATCAAAAGCCCTCAA+CGG | 0.647142 | 6_4:-33581380 | Msa0986020:CDS |
| TTGTTTACATTCGATCCATG+AGG | 0.647911 | 6_4:+33581768 | None:intergenic |
| TGTTCAATACACTCGAGATG+AGG | 0.649572 | 6_4:-33583083 | Msa0986020:CDS |
| ATTCCATTGGAGAAACATGA+GGG | 0.651037 | 6_4:+33582344 | None:intergenic |
| GATGATAAAATTATGCATTG+TGG | 0.651559 | 6_4:-33581276 | Msa0986020:CDS |
| CCTTGATGCATCAACAGGTG+TGG | 0.654305 | 6_4:-33583134 | Msa0986020:CDS |
| AAGCATGCAAATCGACACAA+TGG | 0.657366 | 6_4:-33580447 | Msa0986020:CDS |
| AATCAATTTCTCCAATGCCG+GGG | 0.663918 | 6_4:+33582762 | None:intergenic |
| AAGTGATGATGCAAATATGG+TGG | 0.666333 | 6_4:-33584036 | Msa0986020:CDS |
| TTTGATGGAGGAAGAAGTGG+CGG | 0.667077 | 6_4:-33581880 | Msa0986020:CDS |
| TTGTTGCTAAGAATACTGAT+GGG | 0.674103 | 6_4:-33581200 | Msa0986020:CDS |
| GTTTCTCCAATGGAATCGAG+TGG | 0.677097 | 6_4:-33582337 | Msa0986020:CDS |
| GTGGAGGAAAACATACCGAT+TGG | 0.681668 | 6_4:-33582703 | Msa0986020:CDS |
| TACCAATGAGAATACTGATG+TGG | 0.683673 | 6_4:-33583107 | Msa0986020:CDS |
| ATTGGGTAATGATTTGACAG+AGG | 0.685670 | 6_4:-33582464 | Msa0986020:CDS |
| TGAATCAGACAAACTAGACG+AGG | 0.688676 | 6_4:-33583940 | Msa0986020:CDS |
| CCAATGCCATCTCCTTCAGG+CGG | 0.691471 | 6_4:+33583499 | None:intergenic |
| TGATGCATCAAGGCACATTG+CGG | 0.692371 | 6_4:+33583144 | None:intergenic |
| TATGGTGGATGTAGAGCATG+AGG | 0.697900 | 6_4:-33584021 | Msa0986020:CDS |
| GAGCGATGCAAATTCAGACG+AGG | 0.701114 | 6_4:-33580300 | Msa0986020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATACAATGTTTTATAAAA+AGG | + | chr6_4:33583699-33583718 | None:intergenic | 10.0% |
| !! | AGAAATTTACAACAAAATAA+AGG | + | chr6_4:33579898-33579917 | None:intergenic | 15.0% |
| !!! | ATCTCAAACATTTATATTTT+AGG | - | chr6_4:33580009-33580028 | Msa0986020:intron | 15.0% |
| !!! | GTAAGTTTTAAGAATAAAAA+GGG | - | chr6_4:33582692-33582711 | Msa0986020:CDS | 15.0% |
| !!! | TAAGTTTTAAGAATAAAAAG+GGG | - | chr6_4:33582693-33582712 | Msa0986020:CDS | 15.0% |
| !! | AATATTATTCTGTAATCAAA+AGG | - | chr6_4:33582804-33582823 | Msa0986020:CDS | 15.0% |
| !! | ATATTATTCTGTAATCAAAA+GGG | - | chr6_4:33582805-33582824 | Msa0986020:CDS | 15.0% |
| !! | TGATATAGAAGAATAAAATA+GGG | + | chr6_4:33582836-33582855 | None:intergenic | 15.0% |
| !! | TGCAATAAAATATTATATCA+TGG | + | chr6_4:33582928-33582947 | None:intergenic | 15.0% |
| !!! | CTTGGTTTGATAATTTTTTT+TGG | - | chr6_4:33579830-33579849 | Msa0986020:CDS | 20.0% |
| !! | TACAACAAAATAAAGGATTA+GGG | + | chr6_4:33579891-33579910 | None:intergenic | 20.0% |
| !! | TTACAACAAAATAAAGGATT+AGG | + | chr6_4:33579892-33579911 | None:intergenic | 20.0% |
| !! | CCTATTATATCATCTTATAT+GGG | + | chr6_4:33580726-33580745 | None:intergenic | 20.0% |
| !! | TCCTATTATATCATCTTATA+TGG | + | chr6_4:33580727-33580746 | None:intergenic | 20.0% |
| !! | AAAACAAATAAATTTACCTG+TGG | + | chr6_4:33581541-33581560 | None:intergenic | 20.0% |
| !!! | TTGTTTTGCCAAATAATTTA+TGG | - | chr6_4:33581554-33581573 | Msa0986020:CDS | 20.0% |
| !! | AAAAATTGCTAATGATTTGA+TGG | - | chr6_4:33581715-33581734 | Msa0986020:CDS | 20.0% |
| !!! | ATGCAAATTTTTTCTTATGA+AGG | - | chr6_4:33582448-33582467 | Msa0986020:CDS | 20.0% |
| !! | ATAATTAATTAAGTCAGTAG+TGG | - | chr6_4:33582665-33582684 | Msa0986020:CDS | 20.0% |
| !! | TAATTAATTAAGTCAGTAGT+GGG | - | chr6_4:33582666-33582685 | Msa0986020:CDS | 20.0% |
| !!! | GGTAAGTTTTAAGAATAAAA+AGG | - | chr6_4:33582691-33582710 | Msa0986020:CDS | 20.0% |
| !! | CTGATATAGAAGAATAAAAT+AGG | + | chr6_4:33582837-33582856 | None:intergenic | 20.0% |
| !!! | TTTTATTCTTCTATATCAGT+TGG | - | chr6_4:33582838-33582857 | Msa0986020:intron | 20.0% |
| !! | TTCAACTAATAAAGATTATG+CGG | - | chr6_4:33583076-33583095 | Msa0986020:CDS | 20.0% |
| !! | ATCATGTTACTATTATTTGA+TGG | - | chr6_4:33583997-33584016 | Msa0986020:CDS | 20.0% |
| !! | TTATGATTTATGATGACTAT+TGG | - | chr6_4:33584043-33584062 | Msa0986020:CDS | 20.0% |
| !!! | GCATACTAAAGTTTATATTT+TGG | - | chr6_4:33584172-33584191 | Msa0986020:five_prime_UTR | 20.0% |
| ! | TTTACAAAGATAATTGCACT+TGG | - | chr6_4:33579812-33579831 | Msa0986020:CDS | 25.0% |
| ! | ACAACAAAATAAAGGATTAG+GGG | + | chr6_4:33579890-33579909 | None:intergenic | 25.0% |
| !! | AGTATTGAGTGAAAAAACTA+AGG | - | chr6_4:33580254-33580273 | Msa0986020:CDS | 25.0% |
| ! | TTCCTTAAATGTTAATCCAA+AGG | - | chr6_4:33580374-33580393 | Msa0986020:CDS | 25.0% |
| ! | TTCCTTTGGATTAACATTTA+AGG | + | chr6_4:33580379-33580398 | None:intergenic | 25.0% |
| ! | GGTTGAACAAATTCAAAATT+TGG | - | chr6_4:33580413-33580432 | Msa0986020:CDS | 25.0% |
| ! | CCCATATAAGATGATATAAT+AGG | - | chr6_4:33580723-33580742 | Msa0986020:intron | 25.0% |
| ! | TGATAAGAATTGTGTTCTAT+CGG | - | chr6_4:33581326-33581345 | Msa0986020:CDS | 25.0% |
| ! | CACTATGACCATAAATTATT+TGG | + | chr6_4:33581565-33581584 | None:intergenic | 25.0% |
| ! | TCATCTGATAATTTAACACT+TGG | + | chr6_4:33582091-33582110 | None:intergenic | 25.0% |
| !! | CAACTTTTTACCAAATTCTT+CGG | + | chr6_4:33582137-33582156 | None:intergenic | 25.0% |
| !!! | GATTTCAGTTCATATTTTGA+TGG | - | chr6_4:33582295-33582314 | Msa0986020:CDS | 25.0% |
| ! | GATGATAAAATTATGCATTG+TGG | - | chr6_4:33582334-33582353 | Msa0986020:CDS | 25.0% |
| ! | AGTAGTTAATTATGCAGTTA+TGG | - | chr6_4:33582621-33582640 | Msa0986020:CDS | 25.0% |
| ! | GTTGAAGCTTCAAATTTATT+AGG | + | chr6_4:33583062-33583081 | None:intergenic | 25.0% |
| ! | AGAACAAAATCAATCTGATA+CGG | - | chr6_4:33583268-33583287 | Msa0986020:CDS | 25.0% |
| !!! | CATTCAATATACGTTTTAAG+TGG | - | chr6_4:33583453-33583472 | Msa0986020:CDS | 25.0% |
| !!! | TTTCTGAAAACTGTTTTCAA+AGG | - | chr6_4:33583581-33583600 | Msa0986020:CDS | 25.0% |
| ! | ACGAAAATTGTGGAAAATAT+TGG | - | chr6_4:33583610-33583629 | Msa0986020:intron | 25.0% |
| ! | ATGTTCTCTTTATGTATCAT+TGG | + | chr6_4:33583838-33583857 | None:intergenic | 25.0% |
| ! | GAACATTAAATTTGACAAGA+AGG | - | chr6_4:33583852-33583871 | Msa0986020:intron | 25.0% |
| ! | CAACACTACATATACTAAAA+AGG | + | chr6_4:33583952-33583971 | None:intergenic | 25.0% |
| !!! | CTTTTTAGTATATGTAGTGT+TGG | - | chr6_4:33583950-33583969 | Msa0986020:CDS | 25.0% |
| !!! | GTTGGTTACTGTTTTTAATT+TGG | - | chr6_4:33583968-33583987 | Msa0986020:CDS | 25.0% |
| ! | ATGTGAAATGTACAATATTG+TGG | - | chr6_4:33584140-33584159 | Msa0986020:five_prime_UTR | 25.0% |
| ! | ATCAAGTGATGATGCAAATA+TGG | - | chr6_4:33579571-33579590 | Msa0986020:three_prime_UTR | 30.0% |
| GGAGTAGTTAAAATTTGATC+TGG | + | chr6_4:33579698-33579717 | None:intergenic | 30.0% | |
| ATTTCAACTTAGACTCTTCT+AGG | + | chr6_4:33580089-33580108 | None:intergenic | 30.0% | |
| ACAAAGTGTAGATGACAATA+TGG | - | chr6_4:33580215-33580234 | Msa0986020:intron | 30.0% | |
| GATCAGAATAATATCCATCA+AGG | - | chr6_4:33580330-33580349 | Msa0986020:CDS | 30.0% | |
| GGATGATAATAATTGTGTGA+TGG | - | chr6_4:33580434-33580453 | Msa0986020:CDS | 30.0% | |
| CTCGTCACACATAAATATTT+GGG | + | chr6_4:33580684-33580703 | None:intergenic | 30.0% | |
| ACTCGTCACACATAAATATT+TGG | + | chr6_4:33580685-33580704 | None:intergenic | 30.0% | |
| ACGAGTAAATTGAATATGAC+AGG | - | chr6_4:33580699-33580718 | Msa0986020:intron | 30.0% | |
| CTCTCTAACCTTAATATTTC+AGG | - | chr6_4:33580760-33580779 | Msa0986020:intron | 30.0% | |
| TGTAGATTACTTAGCATAGT+GGG | + | chr6_4:33580985-33581004 | None:intergenic | 30.0% | |
| AATAAAGAGAACATTGATCC+CGG | - | chr6_4:33581048-33581067 | Msa0986020:intron | 30.0% | |
| ATAGATCTTCAAGATGTTTG+TGG | - | chr6_4:33581195-33581214 | Msa0986020:CDS | 30.0% | |
| ! | CTTGAAAATATTTTTCGCAC+CGG | + | chr6_4:33581382-33581401 | None:intergenic | 30.0% |
| CATGTCTTCAACAGTTAAAT+TGG | + | chr6_4:33581409-33581428 | None:intergenic | 30.0% | |
| TTGTACAGAACAATGTGAAA+TGG | + | chr6_4:33581611-33581630 | None:intergenic | 30.0% | |
| AATTGCTAATGATTTGATGG+AGG | - | chr6_4:33581718-33581737 | Msa0986020:CDS | 30.0% | |
| AATCTCAGAAATTGTGGATT+TGG | - | chr6_4:33581965-33581984 | Msa0986020:intron | 30.0% | |
| CGAAGAATTTGGTAAAAAGT+TGG | - | chr6_4:33582135-33582154 | Msa0986020:CDS | 30.0% | |
| AGAATTTGGTAAAAAGTTGG+CGG | - | chr6_4:33582138-33582157 | Msa0986020:CDS | 30.0% | |
| AATCTTCTACATGATGCTTT+AGG | - | chr6_4:33582271-33582290 | Msa0986020:CDS | 30.0% | |
| ATCTTCTACATGATGCTTTA+GGG | - | chr6_4:33582272-33582291 | Msa0986020:CDS | 30.0% | |
| AAAATTATGCATTGTGGATC+TGG | - | chr6_4:33582340-33582359 | Msa0986020:CDS | 30.0% | |
| TTGTTGCTAAGAATACTGAT+GGG | - | chr6_4:33582410-33582429 | Msa0986020:CDS | 30.0% | |
| TCAAGTGTTCAATATTCAGA+TGG | - | chr6_4:33582478-33582497 | Msa0986020:CDS | 30.0% | |
| ATAATATTGCAGAACTTCGA+GGG | + | chr6_4:33582792-33582811 | None:intergenic | 30.0% | |
| AATAATATTGCAGAACTTCG+AGG | + | chr6_4:33582793-33582812 | None:intergenic | 30.0% | |
| ATCATCAGAAAAGACATGTA+TGG | - | chr6_4:33583004-33583023 | Msa0986020:CDS | 30.0% | |
| !!! | TGTTTTGATCCAAATACACT+TGG | - | chr6_4:33583107-33583126 | Msa0986020:CDS | 30.0% |
| !! | AACTCCATTTGATTAGTTTG+AGG | + | chr6_4:33583341-33583360 | None:intergenic | 30.0% |
| ! | ATTTTATTGCCTTGTCTACA+AGG | - | chr6_4:33583490-33583509 | Msa0986020:CDS | 30.0% |
| ! | TTTTATTGCCTTGTCTACAA+GGG | - | chr6_4:33583491-33583510 | Msa0986020:CDS | 30.0% |
| GAAGCAGTTTCTATAAATCA+AGG | + | chr6_4:33583763-33583782 | None:intergenic | 30.0% | |
| TGATTTATAGAAACTGCTTC+TGG | - | chr6_4:33583763-33583782 | Msa0986020:intron | 30.0% | |
| AGATGCTTATCAAAAGAAGT+TGG | - | chr6_4:33583792-33583811 | Msa0986020:intron | 30.0% | |
| !! | CTAGGAATAAATTTGCTAAG+AGG | - | chr6_4:33583896-33583915 | Msa0986020:CDS | 30.0% |
| AAAGACAAGTGATGGTATAG+AGG | - | chr6_4:33579427-33579446 | Msa0986020:three_prime_UTR | 35.0% | |
| CATGCTTTCTTGTACGTTAA+CGG | + | chr6_4:33579495-33579514 | None:intergenic | 35.0% | |
| ! | TACAAGAAAGCATGCAAATG+AGG | - | chr6_4:33579501-33579520 | Msa0986020:three_prime_UTR | 35.0% |
| ! | ACAAGAAAGCATGCAAATGA+GGG | - | chr6_4:33579502-33579521 | Msa0986020:three_prime_UTR | 35.0% |
| GGAGAAAAATGAAGACAATC+AGG | - | chr6_4:33579532-33579551 | Msa0986020:three_prime_UTR | 35.0% | |
| ! | AAGTGATGATGCAAATATGG+TGG | - | chr6_4:33579574-33579593 | Msa0986020:three_prime_UTR | 35.0% |
| !!! | CCAACTTTTTCAGTTACACT+CGG | + | chr6_4:33579647-33579666 | None:intergenic | 35.0% |
| TGTCTTGTACACCTTGATAT+AGG | - | chr6_4:33579935-33579954 | Msa0986020:intron | 35.0% | |
| TATAGCACTTGCCTATATCA+AGG | + | chr6_4:33579949-33579968 | None:intergenic | 35.0% | |
| TCTTCACGAAAGATAAGTCA+AGG | - | chr6_4:33580063-33580082 | Msa0986020:intron | 35.0% | |
| CATGGAAATGAATGTTGATG+AGG | - | chr6_4:33580155-33580174 | Msa0986020:intron | 35.0% | |
| GGAGAAAACTGAAGAAAATC+AGG | - | chr6_4:33580176-33580195 | Msa0986020:intron | 35.0% | |
| TGTAGATGACAATATGGTGA+AGG | - | chr6_4:33580221-33580240 | Msa0986020:intron | 35.0% | |
| GTAGATGACAATATGGTGAA+GGG | - | chr6_4:33580222-33580241 | Msa0986020:intron | 35.0% | |
| AAGGTTCATGAAGATTCTAG+TGG | - | chr6_4:33580273-33580292 | Msa0986020:CDS | 35.0% | |
| TACCAATGAGAATACTGATG+TGG | - | chr6_4:33580503-33580522 | Msa0986020:CDS | 35.0% | |
| !!! | TCTAGTTTTGAAGATTCTGC+TGG | - | chr6_4:33580558-33580577 | Msa0986020:CDS | 35.0% |
| !!! | CTAGTTTTGAAGATTCTGCT+GGG | - | chr6_4:33580559-33580578 | Msa0986020:CDS | 35.0% |
| ACTTCATTAGATGGATCAGT+AGG | + | chr6_4:33580603-33580622 | None:intergenic | 35.0% | |
| ATTGGTTGTCACAGGTATAT+TGG | - | chr6_4:33580650-33580669 | Msa0986020:intron | 35.0% | |
| !! | TAGGAGTGCCTGAAATATTA+AGG | + | chr6_4:33580771-33580790 | None:intergenic | 35.0% |
| TGGAGTGAAGTTTGAATCTT+CGG | - | chr6_4:33580810-33580829 | Msa0986020:intron | 35.0% | |
| TCATTGACACCAAGAGATAT+TGG | - | chr6_4:33580874-33580893 | Msa0986020:intron | 35.0% | |
| TCACAAACTCCAATATCTCT+TGG | + | chr6_4:33580886-33580905 | None:intergenic | 35.0% | |
| AGATATTGGAGTTTGTGATG+TGG | - | chr6_4:33580888-33580907 | Msa0986020:intron | 35.0% | |
| ATGATCATGGTCAAGAGAAA+AGG | - | chr6_4:33580947-33580966 | Msa0986020:intron | 35.0% | |
| CTGTAGATTACTTAGCATAG+TGG | + | chr6_4:33580986-33581005 | None:intergenic | 35.0% | |
| TCAGTCTGATTCAGAAGAAT+TGG | - | chr6_4:33581128-33581147 | Msa0986020:CDS | 35.0% | |
| CAGTCTGATTCAGAAGAATT+GGG | - | chr6_4:33581129-33581148 | Msa0986020:CDS | 35.0% | |
| ATTGGGTAATGATTTGACAG+AGG | - | chr6_4:33581146-33581165 | Msa0986020:CDS | 35.0% | |
| TTGGGTAATGATTTGACAGA+GGG | - | chr6_4:33581147-33581166 | Msa0986020:CDS | 35.0% | |
| CAAGTTGCAAACATGGATAA+CGG | - | chr6_4:33581171-33581190 | Msa0986020:CDS | 35.0% | |
| ATTCCATTGGAGAAACATGA+GGG | + | chr6_4:33581269-33581288 | None:intergenic | 35.0% | |
| TGTGAAGTTGTTCAACCAAA+CGG | + | chr6_4:33581299-33581318 | None:intergenic | 35.0% | |
| GGTTGAACAACTTCACAAAT+TGG | - | chr6_4:33581302-33581321 | Msa0986020:CDS | 35.0% | |
| !! | ACTTCACGTAATGGATCAAT+TGG | + | chr6_4:33581483-33581502 | None:intergenic | 35.0% |
| TGATCTTGCTCTTCACAAAA+TGG | - | chr6_4:33581512-33581531 | Msa0986020:CDS | 35.0% | |
| GAGCAGTGAATACAATATCA+AGG | + | chr6_4:33581655-33581674 | None:intergenic | 35.0% | |
| ! | CTGCTTGAATCTGCATTTTT+AGG | + | chr6_4:33581677-33581696 | None:intergenic | 35.0% |
| !! | GTTGAAGATGTTTCTGAAAC+TGG | - | chr6_4:33581776-33581795 | Msa0986020:CDS | 35.0% |
| AGCAATGAAGCTATAAAGCA+AGG | - | chr6_4:33581806-33581825 | Msa0986020:CDS | 35.0% | |
| TGTTTACATTCGATCCATGA+GGG | + | chr6_4:33581844-33581863 | None:intergenic | 35.0% | |
| TTGTTTACATTCGATCCATG+AGG | + | chr6_4:33581845-33581864 | None:intergenic | 35.0% | |
| ! | TGACCTTTTACATGTTTCTC+CGG | - | chr6_4:33581868-33581887 | Msa0986020:CDS | 35.0% |
| GACTTCAATCTCAGAAATTG+TGG | - | chr6_4:33581959-33581978 | Msa0986020:intron | 35.0% | |
| ! | AAGATTTTCCATAGACACGT+TGG | + | chr6_4:33582050-33582069 | None:intergenic | 35.0% |
| ! | AGATGATGATGATCTTGTAC+TGG | - | chr6_4:33582105-33582124 | Msa0986020:CDS | 35.0% |
| TTTCACAGTCATCTTCAAGA+AGG | + | chr6_4:33582177-33582196 | None:intergenic | 35.0% | |
| !! | GATGAAGCTCTAAATTCAAG+TGG | - | chr6_4:33582211-33582230 | Msa0986020:CDS | 35.0% |
| TCTTCTACATGATGCTTTAG+GGG | - | chr6_4:33582273-33582292 | Msa0986020:CDS | 35.0% | |
| TGATTCATCAGGGAAACAAA+AGG | + | chr6_4:33582389-33582408 | None:intergenic | 35.0% | |
| ! | TAGCAACAACTGATTCATCA+GGG | + | chr6_4:33582399-33582418 | None:intergenic | 35.0% |
| ! | TTAGCAACAACTGATTCATC+AGG | + | chr6_4:33582400-33582419 | None:intergenic | 35.0% |
| GTTGTTGCTAAGAATACTGA+TGG | - | chr6_4:33582409-33582428 | Msa0986020:CDS | 35.0% | |
| TTCTAGTAGTACTTATCCCA+TGG | - | chr6_4:33582537-33582556 | Msa0986020:CDS | 35.0% | |
| AATATACCTAATGCTGCCAT+GGG | + | chr6_4:33582556-33582575 | None:intergenic | 35.0% | |
| ! | TTAATTAAGTCAGTAGTGGG+AGG | - | chr6_4:33582669-33582688 | Msa0986020:CDS | 35.0% |
| ! | TAATTAAGTCAGTAGTGGGA+GGG | - | chr6_4:33582670-33582689 | Msa0986020:CDS | 35.0% |
| AAGAATAAAAAGGGGAGAGA+AGG | - | chr6_4:33582701-33582720 | Msa0986020:CDS | 35.0% | |
| AGAATAAAAAGGGGAGAGAA+GGG | - | chr6_4:33582702-33582721 | Msa0986020:CDS | 35.0% | |
| ACAACATCTCCAAGTGTATT+TGG | + | chr6_4:33583119-33583138 | None:intergenic | 35.0% | |
| TACACTTGGAGATGTTGTTA+TGG | - | chr6_4:33583121-33583140 | Msa0986020:CDS | 35.0% | |
| TCTGATGTTCATGATGGTAT+TGG | - | chr6_4:33583230-33583249 | Msa0986020:CDS | 35.0% | |
| AGTGCCTCAAACTAATCAAA+TGG | - | chr6_4:33583334-33583353 | Msa0986020:CDS | 35.0% | |
| ! | CTTCAACAACTTTTTGCTTC+AGG | - | chr6_4:33583374-33583393 | Msa0986020:CDS | 35.0% |
| ATGCATTAGCACTTGAATAG+AGG | + | chr6_4:33583436-33583455 | None:intergenic | 35.0% | |
| TTAATAGACCCTTGTAGACA+AGG | + | chr6_4:33583502-33583521 | None:intergenic | 35.0% | |
| AAGGCTGTAAACGAAAATTG+TGG | - | chr6_4:33583600-33583619 | Msa0986020:intron | 35.0% | |
| GATAATGAAAACCAGACACA+TGG | - | chr6_4:33583663-33583682 | Msa0986020:intron | 35.0% | |
| ATAAGCGACTGTTTCGATAT+AGG | - | chr6_4:33583715-33583734 | Msa0986020:intron | 35.0% | |
| TTTGACAAGAAGGATGAAGT+TGG | - | chr6_4:33583862-33583881 | Msa0986020:intron | 35.0% | |
| TTCTGCTTAAGATCTTGAAG+AGG | + | chr6_4:33583925-33583944 | None:intergenic | 35.0% | |
| !! | ATGGTCATGCTTTTTAGTAG+TGG | - | chr6_4:33584016-33584035 | Msa0986020:CDS | 35.0% |
| TCTTCGCAAAAGACAAGTGA+TGG | - | chr6_4:33579419-33579438 | Msa0986020:three_prime_UTR | 40.0% | |
| AAGTTGAACTCACCATCTGA+AGG | - | chr6_4:33579455-33579474 | Msa0986020:three_prime_UTR | 40.0% | |
| CATGCAAATGAGGGTCAATA+AGG | - | chr6_4:33579511-33579530 | Msa0986020:three_prime_UTR | 40.0% | |
| CCGAGTGTAACTGAAAAAGT+TGG | - | chr6_4:33579644-33579663 | Msa0986020:three_prime_UTR | 40.0% | |
| TGAATCAGACAAACTAGACG+AGG | - | chr6_4:33579670-33579689 | Msa0986020:exon | 40.0% | |
| ACCTGAATCAACCTTGTGAT+CGG | + | chr6_4:33579738-33579757 | None:intergenic | 40.0% | |
| !! | GTACTAGTCTTTCTGCAAGT+AGG | - | chr6_4:33579854-33579873 | Msa0986020:intron | 40.0% |
| TCATCTACACTTTGTGATGC+AGG | + | chr6_4:33580210-33580229 | None:intergenic | 40.0% | |
| TATCCATCAAGGATCTGTCA+TGG | - | chr6_4:33580341-33580360 | Msa0986020:CDS | 40.0% | |
| GTTAATCCAAAGGAATCCAG+TGG | - | chr6_4:33580384-33580403 | Msa0986020:CDS | 40.0% | |
| AGCCACATCAGTATTCTCAT+TGG | + | chr6_4:33580508-33580527 | None:intergenic | 40.0% | |
| TGTTCAATACACTCGAGATG+AGG | - | chr6_4:33580527-33580546 | Msa0986020:CDS | 40.0% | |
| CTCGTCTCTACTTCATTAGA+TGG | + | chr6_4:33580612-33580631 | None:intergenic | 40.0% | |
| TGATCTCGATGTTCACGAAT+TGG | - | chr6_4:33580632-33580651 | Msa0986020:CDS | 40.0% | |
| !!! | CTTGGAGCTGCATTTTTAGT+AGG | + | chr6_4:33580790-33580809 | None:intergenic | 40.0% |
| ACTAAAAATGCAGCTCCAAG+TGG | - | chr6_4:33580790-33580809 | Msa0986020:intron | 40.0% | |
| GATTCAAACTTCACTCCACT+TGG | + | chr6_4:33580808-33580827 | None:intergenic | 40.0% | |
| AATCAATTTCTCCAATGCCG+GGG | + | chr6_4:33580851-33580870 | None:intergenic | 40.0% | |
| CAATCAATTTCTCCAATGCC+GGG | + | chr6_4:33580852-33580871 | None:intergenic | 40.0% | |
| CCAATCAATTTCTCCAATGC+CGG | + | chr6_4:33580853-33580872 | None:intergenic | 40.0% | |
| TATTGGAGTTTGTGATGTGG+AGG | - | chr6_4:33580891-33580910 | Msa0986020:intron | 40.0% | |
| !! | CATACCGATTGGTGTTAATC+AGG | - | chr6_4:33580918-33580937 | Msa0986020:intron | 40.0% |
| TGCTCCTGATTAACACCAAT+CGG | + | chr6_4:33580925-33580944 | None:intergenic | 40.0% | |
| AATCAGGAGCAAGATGATCA+TGG | - | chr6_4:33580934-33580953 | Msa0986020:intron | 40.0% | |
| TCATGGTCAAGAGAAAAGGA+TGG | - | chr6_4:33580951-33580970 | Msa0986020:intron | 40.0% | |
| CTTTCTTCTGAATCACTTGC+TGG | + | chr6_4:33581012-33581031 | None:intergenic | 40.0% | |
| CTTCAAGATGTTTGTGGAAG+TGG | - | chr6_4:33581201-33581220 | Msa0986020:CDS | 40.0% | |
| TATCCCTCATGTTTCTCCAA+TGG | - | chr6_4:33581263-33581282 | Msa0986020:CDS | 40.0% | |
| GATTCCATTGGAGAAACATG+AGG | + | chr6_4:33581270-33581289 | None:intergenic | 40.0% | |
| !! | TCACGTAATGGATCAATTGG+CGG | + | chr6_4:33581480-33581499 | None:intergenic | 40.0% |
| TGATCCATTACGTGAAGTTG+AGG | - | chr6_4:33581485-33581504 | Msa0986020:CDS | 40.0% | |
| TTAGCCTCAACTTCACGTAA+TGG | + | chr6_4:33581492-33581511 | None:intergenic | 40.0% | |
| TGCAGATTCAAGCAGTGTAA+AGG | - | chr6_4:33581682-33581701 | Msa0986020:CDS | 40.0% | |
| TGATTTGATGGAGGAAGAAG+TGG | - | chr6_4:33581727-33581746 | Msa0986020:CDS | 40.0% | |
| ! | GGTTTTTGCATCAGTATCCT+CGG | + | chr6_4:33582029-33582048 | None:intergenic | 40.0% |
| TGCAAAAACCAACGTGTCTA+TGG | - | chr6_4:33582039-33582058 | Msa0986020:intron | 40.0% | |
| CATTTACGATTGACCGTTGA+GGG | + | chr6_4:33582246-33582265 | None:intergenic | 40.0% | |
| TCATTTACGATTGACCGTTG+AGG | + | chr6_4:33582247-33582266 | None:intergenic | 40.0% | |
| GGATCTGGAAAAAGTGAATC+TGG | - | chr6_4:33582355-33582374 | Msa0986020:CDS | 40.0% | |
| CACGATCTATTTGTGACAAC+TGG | - | chr6_4:33582505-33582524 | Msa0986020:CDS | 40.0% | |
| CAATATACCTAATGCTGCCA+TGG | + | chr6_4:33582557-33582576 | None:intergenic | 40.0% | |
| GCATCTGCATTGGAAGATAA+AGG | + | chr6_4:33582963-33582982 | None:intergenic | 40.0% | |
| AAGCATGCAAATCGACACAA+TGG | - | chr6_4:33583163-33583182 | Msa0986020:CDS | 40.0% | |
| AATGGAGAAGGTAAACAGTC+AGG | - | chr6_4:33583181-33583200 | Msa0986020:CDS | 40.0% | |
| ATGGAGAAGGTAAACAGTCA+GGG | - | chr6_4:33583182-33583201 | Msa0986020:CDS | 40.0% | |
| GAGAACTCTGATGTTCATGA+TGG | - | chr6_4:33583224-33583243 | Msa0986020:CDS | 40.0% | |
| ! | GATGTTCATGATGGTATTGG+TGG | - | chr6_4:33583233-33583252 | Msa0986020:CDS | 40.0% |
| ATCATTGGTGTAGCCTTTGA+TGG | + | chr6_4:33583823-33583842 | None:intergenic | 40.0% | |
| AAGTTGGATCAGTGATGTCT+AGG | - | chr6_4:33583878-33583897 | Msa0986020:CDS | 40.0% | |
| CCAATGTCATCTCCTTCAGA+TGG | + | chr6_4:33579470-33579489 | None:intergenic | 45.0% | |
| CCATCTGAAGGAGATGACAT+TGG | - | chr6_4:33579467-33579486 | Msa0986020:three_prime_UTR | 45.0% | |
| !! | TATGGTGGATGTAGAGCATG+AGG | - | chr6_4:33579589-33579608 | Msa0986020:three_prime_UTR | 45.0% |
| TCGGACTTGACTTCACTTAG+TGG | + | chr6_4:33579719-33579738 | None:intergenic | 45.0% | |
| TGAAGTCAAGTCCGATCACA+AGG | - | chr6_4:33579724-33579743 | Msa0986020:CDS | 45.0% | |
| ! | TCCGATCACAAGGTTGATTC+AGG | - | chr6_4:33579734-33579753 | Msa0986020:CDS | 45.0% |
| AAGTTGAAATCACCGCCTGA+AGG | - | chr6_4:33580099-33580118 | Msa0986020:intron | 45.0% | |
| CATGCTTTCCTCTACGTCAA+CGG | + | chr6_4:33580139-33580158 | None:intergenic | 45.0% | |
| TCTCCATGACAGATCCTTGA+TGG | + | chr6_4:33580347-33580366 | None:intergenic | 45.0% | |
| AAAGGAATCCAGTGGACGTT+CGG | - | chr6_4:33580392-33580411 | Msa0986020:CDS | 45.0% | |
| TGATGCATCAAGGCACATTG+CGG | + | chr6_4:33580469-33580488 | None:intergenic | 45.0% | |
| ATGTGCCTTGATGCATCAAC+AGG | - | chr6_4:33580471-33580490 | Msa0986020:CDS | 45.0% | |
| TCAGTAGGCAGAACTTGAAC+TGG | + | chr6_4:33580588-33580607 | None:intergenic | 45.0% | |
| GTTCACGAATTGGTTGTCAC+AGG | - | chr6_4:33580642-33580661 | Msa0986020:intron | 45.0% | |
| ! | GGAAAAGATGAGTATTGCCC+CGG | - | chr6_4:33580831-33580850 | Msa0986020:intron | 45.0% |
| ! | CCGGCATTGGAGAAATTGAT+TGG | - | chr6_4:33580850-33580869 | Msa0986020:intron | 45.0% |
| GTGGAGGAAAACATACCGAT+TGG | - | chr6_4:33580907-33580926 | Msa0986020:intron | 45.0% | |
| TTCTGCATTCCAACCTTCAC+CGG | + | chr6_4:33581070-33581089 | None:intergenic | 45.0% | |
| AGAGGGACAAGTTGCAAACA+TGG | - | chr6_4:33581164-33581183 | Msa0986020:CDS | 45.0% | |
| GATGTTTGTGGAAGTGGCAA+CGG | - | chr6_4:33581207-33581226 | Msa0986020:CDS | 45.0% | |
| GTTTCTCCAATGGAATCGAG+TGG | - | chr6_4:33581273-33581292 | Msa0986020:CDS | 45.0% | |
| GTTTGCCTTGATGCATCAAC+CGG | - | chr6_4:33581360-33581379 | Msa0986020:CDS | 45.0% | |
| CTTCACAAAATGGTTGCCAC+AGG | - | chr6_4:33581522-33581541 | Msa0986020:CDS | 45.0% | |
| TTTGATGGAGGAAGAAGTGG+CGG | - | chr6_4:33581730-33581749 | Msa0986020:CDS | 45.0% | |
| CCACCGGAGAAACATGTAAA+AGG | + | chr6_4:33581874-33581893 | None:intergenic | 45.0% | |
| ! | CCTTTTACATGTTTCTCCGG+TGG | - | chr6_4:33581871-33581890 | Msa0986020:CDS | 45.0% |
| AAAGGTGAACTCGATTCCAC+CGG | + | chr6_4:33581890-33581909 | None:intergenic | 45.0% | |
| GAATCGAGTTCACCTTTGGT+TGG | - | chr6_4:33581893-33581912 | Msa0986020:CDS | 45.0% | |
| TGAACTTGTCCTCCAACCAA+AGG | + | chr6_4:33581908-33581927 | None:intergenic | 45.0% | |
| GACGATAATGTTGTGCACTC+TGG | - | chr6_4:33581935-33581954 | Msa0986020:intron | 45.0% | |
| TGATAAATCCATTGCTGCCG+AGG | - | chr6_4:33582009-33582028 | Msa0986020:intron | 45.0% | |
| ! | CTTGGTGCATGACTCTCATA+TGG | + | chr6_4:33582073-33582092 | None:intergenic | 45.0% |
| ACTTATCCCATGGCAGCATT+AGG | - | chr6_4:33582547-33582566 | Msa0986020:CDS | 45.0% | |
| ATCTGAGGATTTGACTGGGA+AGG | - | chr6_4:33582738-33582757 | Msa0986020:CDS | 45.0% | |
| TCTGAGGATTTGACTGGGAA+GGG | - | chr6_4:33582739-33582758 | Msa0986020:CDS | 45.0% | |
| !! | AAGGGGCCATTTTGGCATTA+GGG | - | chr6_4:33582757-33582776 | Msa0986020:CDS | 45.0% |
| TTCTTCACAGGCATCTGCAT+TGG | + | chr6_4:33582973-33582992 | None:intergenic | 45.0% | |
| TCTCAGCATCTCTTCTTCAC+AGG | + | chr6_4:33582985-33583004 | None:intergenic | 45.0% | |
| ATGTATGGTTGCAGATCCTG+AGG | - | chr6_4:33583019-33583038 | Msa0986020:CDS | 45.0% | |
| GAAAATCCAATGCACTCCTC+AGG | + | chr6_4:33583038-33583057 | None:intergenic | 45.0% | |
| GCAAATCGACACAATGGAGA+AGG | - | chr6_4:33583169-33583188 | Msa0986020:CDS | 45.0% | |
| AAGGTAAACAGTCAGGGAGA+AGG | - | chr6_4:33583188-33583207 | Msa0986020:CDS | 45.0% | |
| !! | CATGATGGTATTGGTGGAGT+TGG | - | chr6_4:33583239-33583258 | Msa0986020:CDS | 45.0% |
| ATCAATCTGATACGGTGAGC+CGG | - | chr6_4:33583276-33583295 | Msa0986020:CDS | 45.0% | |
| ! | CATCGCTCCTTTTCCTTTTC+CGG | + | chr6_4:33583298-33583317 | None:intergenic | 45.0% |
| !! | TACGTTTTAAGTGGCTGCTG+TGG | - | chr6_4:33583462-33583481 | Msa0986020:CDS | 45.0% |
| GAAGTTGGACTCACCATCAA+AGG | - | chr6_4:33583807-33583826 | Msa0986020:intron | 45.0% | |
| !! | AGACGCTGACTTTACTTCGC+AGG | + | chr6_4:33580046-33580065 | None:intergenic | 50.0% |
| AAATCACCGCCTGAAGGAGA+TGG | - | chr6_4:33580105-33580124 | Msa0986020:intron | 50.0% | |
| GATCCAATGCCATCTCCTTC+AGG | + | chr6_4:33580117-33580136 | None:intergenic | 50.0% | |
| CATTGGATCCGTTGACGTAG+AGG | - | chr6_4:33580128-33580147 | Msa0986020:intron | 50.0% | |
| CGTTGACGTAGAGGAAAGCA+TGG | - | chr6_4:33580137-33580156 | Msa0986020:intron | 50.0% | |
| GAACGTCCACTGGATTCCTT+TGG | + | chr6_4:33580393-33580412 | None:intergenic | 50.0% | |
| TTGTTCAACCGAACGTCCAC+TGG | + | chr6_4:33580403-33580422 | None:intergenic | 50.0% | |
| CCACACCTGTTGATGCATCA+AGG | + | chr6_4:33580479-33580498 | None:intergenic | 50.0% | |
| CCTTGATGCATCAACAGGTG+TGG | - | chr6_4:33580476-33580495 | Msa0986020:CDS | 50.0% | |
| GAGAACATTGATCCCGGTGA+AGG | - | chr6_4:33581054-33581073 | Msa0986020:intron | 50.0% | |
| ACATTGATCCCGGTGAAGGT+TGG | - | chr6_4:33581058-33581077 | Msa0986020:intron | 50.0% | |
| TCTGCATTCCAACCTTCACC+GGG | + | chr6_4:33581069-33581088 | None:intergenic | 50.0% | |
| TCGCTCATGTCAACTGCACT+AGG | + | chr6_4:33581093-33581112 | None:intergenic | 50.0% | |
| AAACGGCCACTCGATTCCAT+TGG | + | chr6_4:33581282-33581301 | None:intergenic | 50.0% | |
| AATGGAATCGAGTGGCCGTT+TGG | - | chr6_4:33581281-33581300 | Msa0986020:CDS | 50.0% | |
| !! | GGTAGCATCGATAACCCTCA+TGG | - | chr6_4:33581827-33581846 | Msa0986020:CDS | 50.0% |
| GGTGGAATCGAGTTCACCTT+TGG | - | chr6_4:33581889-33581908 | Msa0986020:CDS | 50.0% | |
| TCGAGTTCACCTTTGGTTGG+AGG | - | chr6_4:33581896-33581915 | Msa0986020:CDS | 50.0% | |
| ATCAGTATCCTCGGCAGCAA+TGG | + | chr6_4:33582020-33582039 | None:intergenic | 50.0% | |
| CTGGCTGCTTCCGAAGAATT+TGG | - | chr6_4:33582124-33582143 | Msa0986020:CDS | 50.0% | |
| GTGGCATCAAAAGCCCTCAA+CGG | - | chr6_4:33582230-33582249 | Msa0986020:CDS | 50.0% | |
| GGGAGAGAAGGGAAGATTGA+GGG | - | chr6_4:33582713-33582732 | Msa0986020:CDS | 50.0% | |
| GGAGAGAAGGGAAGATTGAG+GGG | - | chr6_4:33582714-33582733 | Msa0986020:CDS | 50.0% | |
| GGGCATCTGAGGATTTGACT+GGG | - | chr6_4:33582734-33582753 | Msa0986020:CDS | 50.0% | |
| CTGAGGATTTGACTGGGAAG+GGG | - | chr6_4:33582740-33582759 | Msa0986020:CDS | 50.0% | |
| !! | GAAGGGGCCATTTTGGCATT+AGG | - | chr6_4:33582756-33582775 | Msa0986020:CDS | 50.0% |
| GCACCTCCCTAATGCCAAAA+TGG | + | chr6_4:33582766-33582785 | None:intergenic | 50.0% | |
| GAGCGATGCAAATTCAGACG+AGG | - | chr6_4:33583310-33583329 | Msa0986020:CDS | 50.0% | |
| GTCGCTTACTTCCATGTGTC+TGG | + | chr6_4:33583677-33583696 | None:intergenic | 50.0% | |
| CCAATGCCATCTCCTTCAGG+CGG | + | chr6_4:33580114-33580133 | None:intergenic | 55.0% | |
| ! | GATGAGTATTGCCCCGGCAT+TGG | - | chr6_4:33580837-33580856 | Msa0986020:intron | 55.0% |
| !! | TCGCACCGGTTGATGCATCA+AGG | + | chr6_4:33581368-33581387 | None:intergenic | 55.0% |
| GGGGAGAGAAGGGAAGATTG+AGG | - | chr6_4:33582712-33582731 | Msa0986020:CDS | 55.0% | |
| !! | GGAAGATTGAGGGGCATCTG+AGG | - | chr6_4:33582723-33582742 | Msa0986020:CDS | 55.0% |
| ! | GGGGCATCTGAGGATTTGAC+TGG | - | chr6_4:33582733-33582752 | Msa0986020:CDS | 55.0% |
| ! | TGACTGGGAAGGGGCCATTT+TGG | - | chr6_4:33582749-33582768 | Msa0986020:CDS | 55.0% |
| !! | GGGCCATTTTGGCATTAGGG+AGG | - | chr6_4:33582760-33582779 | Msa0986020:CDS | 55.0% |
| ! | GCAGATCCTGAGGAGTGCAT+TGG | - | chr6_4:33583029-33583048 | Msa0986020:CDS | 55.0% |
| CTGATACGGTGAGCCGGAAA+AGG | - | chr6_4:33583282-33583301 | Msa0986020:CDS | 55.0% | |
| CGGTGAGCCGGAAAAGGAAA+AGG | - | chr6_4:33583288-33583307 | Msa0986020:CDS | 55.0% | |
| CCGCCTGAAGGAGATGGCAT+TGG | - | chr6_4:33580111-33580130 | Msa0986020:intron | 60.0% | |
| !! | GGAGGAAGAAGTGGCGGACA+TGG | - | chr6_4:33581736-33581755 | Msa0986020:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 33579390 | 33584242 | 33579390 | ID=Msa0986020;Name=Msa0986020 |
| chr6_4 | mRNA | 33579390 | 33584242 | 33579390 | ID=Msa0986020-mRNA-1;Parent=Msa0986020;Name=Msa0986020-mRNA-1;_AED=0.01;_eAED=0.01;_QI=122|0.8|0.5|1|1|1|6|294|1037 |
| chr6_4 | exon | 33579390 | 33579859 | 33579390 | ID=Msa0986020-mRNA-1:exon:8787;Parent=Msa0986020-mRNA-1 |
| chr6_4 | exon | 33580237 | 33580653 | 33580237 | ID=Msa0986020-mRNA-1:exon:8786;Parent=Msa0986020-mRNA-1 |
| chr6_4 | exon | 33581064 | 33581945 | 33581064 | ID=Msa0986020-mRNA-1:exon:8785;Parent=Msa0986020-mRNA-1 |
| chr6_4 | exon | 33582089 | 33582850 | 33582089 | ID=Msa0986020-mRNA-1:exon:8784;Parent=Msa0986020-mRNA-1 |
| chr6_4 | exon | 33582969 | 33583601 | 33582969 | ID=Msa0986020-mRNA-1:exon:8783;Parent=Msa0986020-mRNA-1 |
| chr6_4 | exon | 33583877 | 33584242 | 33583877 | ID=Msa0986020-mRNA-1:exon:8782;Parent=Msa0986020-mRNA-1 |
| chr6_4 | five_prime_UTR | 33584121 | 33584242 | 33584121 | ID=Msa0986020-mRNA-1:five_prime_utr;Parent=Msa0986020-mRNA-1 |
| chr6_4 | CDS | 33583877 | 33584120 | 33583877 | ID=Msa0986020-mRNA-1:cds;Parent=Msa0986020-mRNA-1 |
| chr6_4 | CDS | 33582969 | 33583601 | 33582969 | ID=Msa0986020-mRNA-1:cds;Parent=Msa0986020-mRNA-1 |
| chr6_4 | CDS | 33582089 | 33582850 | 33582089 | ID=Msa0986020-mRNA-1:cds;Parent=Msa0986020-mRNA-1 |
| chr6_4 | CDS | 33581064 | 33581945 | 33581064 | ID=Msa0986020-mRNA-1:cds;Parent=Msa0986020-mRNA-1 |
| chr6_4 | CDS | 33580237 | 33580653 | 33580237 | ID=Msa0986020-mRNA-1:cds;Parent=Msa0986020-mRNA-1 |
| chr6_4 | CDS | 33579684 | 33579859 | 33579684 | ID=Msa0986020-mRNA-1:cds;Parent=Msa0986020-mRNA-1 |
| chr6_4 | three_prime_UTR | 33579390 | 33579683 | 33579390 | ID=Msa0986020-mRNA-1:three_prime_utr;Parent=Msa0986020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
