AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0861510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0861510 MtrunA17_Chr5g0395261 94.363 887 25 1 1 862 1 887 0.0 1627
Msa0861510 MtrunA17_Chr4g0039981 66.938 859 254 12 26 858 2 856 0.0 979
Msa0861510 MtrunA17_Chr3g0123761 32.102 352 212 5 338 689 83 407 2.17e-23 105
Msa0861510 MtrunA17_Chr7g0263701 29.412 238 134 6 35 263 10 222 1.11e-11 68.6
Msa0861510 MtrunA17_Chr1g0181611 30.222 225 128 6 92 302 47 256 1.21e-11 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0861510 AT5G16730.1 50.652 843 372 16 45 858 24 851 0.0 608
Msa0861510 AT3G02930.1 48.724 862 380 10 1 858 1 804 0.0 577
Msa0861510 AT3G02930.3 48.724 862 380 10 1 858 1 804 0.0 577
Msa0861510 AT3G02930.2 50.000 824 376 9 39 858 11 802 0.0 576
Msa0861510 AT1G65010.1 51.994 627 297 3 56 681 28 651 6.83e-166 518
Msa0861510 AT1G65010.1 37.288 295 127 13 601 851 1054 1334 2.60e-22 103
Msa0861510 AT4G27595.1 46.879 721 340 10 1 715 1 684 1.24e-161 503
Msa0861510 AT4G27595.2 48.538 684 334 9 39 715 3 675 1.42e-160 500
Msa0861510 AT4G40020.1 34.375 256 157 2 430 685 123 367 1.43e-19 94.4
Msa0861510 AT2G37080.1 32.203 295 144 13 39 329 13 255 7.88e-17 85.5
Msa0861510 AT2G37080.2 32.203 295 144 13 39 329 13 255 7.88e-17 85.5
Msa0861510 AT2G37080.3 32.203 295 142 14 39 329 13 253 7.72e-16 82.4

Find 191 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTAGTCTTAAAGAGAAAT+TGG 0.158453 5_4:-60856464 Msa0861510:CDS
TTTGGTCAAATCTATATATA+AGG 0.197284 5_4:+60854789 None:intergenic
CCATTCACATTCTCAGGTTT+TGG 0.207509 5_4:+60855374 None:intergenic
TTAAAGTGTTTGCATGTATT+TGG 0.209032 5_4:-60855004 Msa0861510:three_prime_UTR
TTGACAGAATATAGAAATTC+AGG 0.227295 5_4:-60859164 None:intergenic
AAACTCAATTTGTTTGGTTT+TGG 0.239482 5_4:-60858981 Msa0861510:five_prime_UTR
AGGAGAAGGTAGCATATTTA+AGG 0.244355 5_4:-60855465 Msa0861510:CDS
TCTGAACGTTCCCTAGAATT+AGG 0.246386 5_4:+60854732 None:intergenic
GAAGTTGAAGGAGAGTTTAT+TGG 0.258244 5_4:-60855702 Msa0861510:CDS
AAGCCTTTGCTTGGCAAGTT+TGG 0.262872 5_4:-60855107 Msa0861510:CDS
ACAAGAAACTGAACAAGTTT+TGG 0.275046 5_4:+60858860 None:intergenic
TAAGCTATCCATTGCCAATT+TGG 0.275956 5_4:+60856183 None:intergenic
TCTGAGAACTCTACTACTTT+AGG 0.280952 5_4:+60855503 None:intergenic
TTGATCACTTGTTCCTTTGT+TGG 0.293101 5_4:+60855140 None:intergenic
GAACTCTTTGCAACAGCTCT+TGG 0.298444 5_4:+60857315 None:intergenic
CGTTGGGAAATGAAATAAAT+AGG 0.301005 5_4:-60855868 Msa0861510:CDS
CTTGTTTCTGACAATGTTGT+TGG 0.305488 5_4:-60858842 Msa0861510:five_prime_UTR
CCTTCTTTCATAATCGTTCA+TGG 0.307900 5_4:-60858736 Msa0861510:exon
TAAGGAAGAGCTTTCGGTTT+CGG 0.323233 5_4:-60855447 Msa0861510:CDS
TCCTCTTCAAAGGATTCTTC+TGG 0.326731 5_4:+60855239 None:intergenic
AGAGGCTTGTAATATTGTTT+AGG 0.329265 5_4:-60854936 Msa0861510:three_prime_UTR
TTGGTCAAATCTATATATAA+GGG 0.337076 5_4:+60854790 None:intergenic
GCTGTTCCTTTGCTTTCTTT+AGG 0.338674 5_4:+60857256 None:intergenic
AACTCTTTGCAACAGCTCTT+GGG 0.339786 5_4:+60857316 None:intergenic
GATGCTGGAGTAGCTTTGTT+AGG 0.349309 5_4:+60858104 None:intergenic
GGCGATTTCCTCTCAGCAAT+TGG 0.351711 5_4:+60857912 None:intergenic
CATATTTAAGGAAGAGCTTT+CGG 0.351877 5_4:-60855453 Msa0861510:CDS
AAAACGAGGACCTCCGATCT+AGG 0.357947 5_4:-60855646 Msa0861510:CDS
AAACAAACTTATCAATGAAT+TGG 0.359829 5_4:-60856233 Msa0861510:CDS
GAAAACAAACTCAATTTGTT+TGG 0.360452 5_4:-60858987 Msa0861510:five_prime_UTR
CGAAACACGAATGAGGAAAA+TGG 0.362443 5_4:-60855563 Msa0861510:CDS
GCAAAGTATTGTTCTATTTG+TGG 0.364116 5_4:+60855048 None:intergenic
TCTGGTTCCGCTCCTTTCTC+TGG 0.369901 5_4:+60855257 None:intergenic
GGCTGAGCTGATACGTTTGA+AGG 0.375509 5_4:-60856839 Msa0861510:CDS
TAAAGAGAAATTGGGAATGT+TGG 0.380347 5_4:-60856455 Msa0861510:CDS
GGTGAAGGCGACTCAGATTC+CGG 0.382732 5_4:+60857993 None:intergenic
TTTCTGCTCCCACTCTCCCT+TGG 0.387561 5_4:+60855940 None:intergenic
AGGAAGCAAATGAGAAACTT+AGG 0.390966 5_4:-60857167 Msa0861510:CDS
TGAAGAAGAAAAGACCAAAT+TGG 0.391100 5_4:-60856197 Msa0861510:CDS
AGCAAAGGAACAGCTGATTC+AGG 0.394668 5_4:-60857247 Msa0861510:CDS
GGAATGTTGGAAATGACAAT+TGG 0.397432 5_4:-60856442 Msa0861510:CDS
ATTATTGGAAGTTTAAGAAC+AGG 0.402750 5_4:+60858938 None:intergenic
TCTAGTCTTAAAGAGAAATT+GGG 0.406330 5_4:-60856463 Msa0861510:CDS
TAACTCCTCCACCTTCTTGA+TGG 0.411635 5_4:+60855613 None:intergenic
CTGCCGAGTTTACTAACTCT+TGG 0.411846 5_4:+60858029 None:intergenic
GAGAATGGGCATGGAGGAGA+AGG 0.415557 5_4:-60855479 Msa0861510:CDS
GTAGCTTTGTTAGGAGTAGC+TGG 0.429776 5_4:+60858113 None:intergenic
AGCTGGAGATGATGCTTTGT+TGG 0.434960 5_4:+60858130 None:intergenic
AGAGAAAGCGGAGATTCTTT+CGG 0.435111 5_4:-60856860 Msa0861510:CDS
CCGAGCTGTTGAGCTGGAAC+AGG 0.436065 5_4:-60857091 Msa0861510:CDS
CTTCTTTAAGTGCTTCCTGC+AGG 0.437922 5_4:+60855741 None:intergenic
GGGAAATGAAATAAATAGGT+TGG 0.439453 5_4:-60855864 Msa0861510:CDS
TTTCACACTGGCTTCTTCCT+CGG 0.439829 5_4:+60855823 None:intergenic
GTGTGTATCTTCTCAGGTGG+AGG 0.442193 5_4:+60859121 None:intergenic
CTACTAGTGTGTATCTTCTC+AGG 0.443370 5_4:+60859115 None:intergenic
CGTTCATGGCTTCAAAATCC+AGG 0.446049 5_4:-60858722 Msa0861510:intron
AGAAGTGAAGGAAGGAAGGA+AGG 0.451173 5_4:-60859074 Msa0861510:five_prime_UTR
TACTAACTCTTGGAGTAGCC+GGG 0.458193 5_4:+60858039 None:intergenic
GAGAGGAAAGCAGAATAAAG+TGG 0.460641 5_4:+60854823 None:intergenic
GCTGGAGATGATGCTTTGTT+GGG 0.461900 5_4:+60858131 None:intergenic
TGATTCCACTTCCTCTTCAA+AGG 0.461956 5_4:+60855229 None:intergenic
CGGCAGAGGGGTATCTAAAC+CGG 0.463124 5_4:-60858012 Msa0861510:CDS
GAATGTTGGAAATGACAATT+GGG 0.464612 5_4:-60856441 Msa0861510:CDS
CGTAGCTTTCGCGTTCAGCT+TGG 0.467021 5_4:+60856098 None:intergenic
GAGATCTGCGTCATTGTCCT+TGG 0.467421 5_4:-60856548 Msa0861510:CDS
TGTGAGGAACCAGCATGCTT+TGG 0.468644 5_4:-60857013 Msa0861510:CDS
AGCTGAGAGCATGAAGTTGA+AGG 0.471831 5_4:-60855714 Msa0861510:CDS
GAGAGAGAGTGTGGCCACCT+TGG 0.471868 5_4:-60859016 Msa0861510:five_prime_UTR
CGTCGGCATGACTCAGTGCC+TGG 0.471915 5_4:+60856911 None:intergenic
ATTCAACTGTGTCTGCAATT+CGG 0.472666 5_4:+60857293 None:intergenic
AGAATCCTTTGAAGAGGAAG+TGG 0.477114 5_4:-60855234 Msa0861510:CDS
TGACAGAATATAGAAATTCA+GGG 0.482080 5_4:-60859163 None:intergenic
ACTGCAACGAAACACCTAGA+AGG 0.483055 5_4:-60856523 Msa0861510:CDS
GAAGAAGAAAACTCGTCGTT+GGG 0.484970 5_4:-60855884 Msa0861510:CDS
CTTTAAGTGCTTCCTGCAGG+TGG 0.485278 5_4:+60855744 None:intergenic
CCAAAACCTGAGAATGTGAA+TGG 0.485446 5_4:-60855374 Msa0861510:CDS
TTACTAACTCTTGGAGTAGC+CGG 0.486128 5_4:+60858038 None:intergenic
TAGAGTTCTCAGAAGAGAAT+GGG 0.491423 5_4:-60855493 Msa0861510:CDS
TCTTAAGCAAGAACTTGAAA+AGG 0.495157 5_4:-60856740 Msa0861510:CDS
TCAGCTGGTGTGGTAGGTCT+CGG 0.496925 5_4:+60857891 None:intergenic
TTTATTAACTGTCTCAATCT+CGG 0.498611 5_4:+60856324 None:intergenic
AAGAAGAAGAAGCCTTTGCT+TGG 0.502628 5_4:-60855116 Msa0861510:CDS
GCGTTGTCTTCTCGCGGCTA+AGG 0.503627 5_4:-60856389 Msa0861510:CDS
GCTAGATGAGTGCAGAATAA+AGG 0.504674 5_4:-60856614 Msa0861510:CDS
TTACTCTAACTTACATCAGC+TGG 0.506928 5_4:+60857876 None:intergenic
ACAGATGGTGGTGAGACAAA+TGG 0.508326 5_4:-60855203 Msa0861510:CDS
GAAGTTCCGAGCTGTTGAGC+TGG 0.508758 5_4:-60857097 Msa0861510:CDS
CTTCCAAACTTGCCAAGCAA+AGG 0.509231 5_4:+60855104 None:intergenic
GCTGTTGAGCTGGAACAGGC+TGG 0.518387 5_4:-60857087 Msa0861510:CDS
AGTGTGGCCACCTTGGAGAC+AGG 0.518779 5_4:-60859009 Msa0861510:five_prime_UTR
AAAGGATTACGATGAAAAGT+TGG 0.519464 5_4:-60856716 Msa0861510:CDS
GTAGAGTTCTCAGAAGAGAA+TGG 0.519533 5_4:-60855494 Msa0861510:CDS
TTTATGTTATCCTAATTCTA+GGG 0.522267 5_4:-60854742 Msa0861510:three_prime_UTR
TGAAGAAGAAAACTCGTCGT+TGG 0.523854 5_4:-60855885 Msa0861510:CDS
GCTTTCGCGTTCAGCTTGGT+TGG 0.525970 5_4:+60856102 None:intergenic
TAGTATTGAAAATTCTAAGA+TGG 0.531285 5_4:-60855975 Msa0861510:CDS
GTGTTTCGTTGCAGTTTCCA+AGG 0.532436 5_4:+60856531 None:intergenic
AATTGAAGCTGCTCAGAAGA+AGG 0.533018 5_4:-60857064 Msa0861510:CDS
CAAAGAAGAAAACATTGTCT+TGG 0.534634 5_4:-60855423 Msa0861510:CDS
GGCTTTGAATTCAAAGATCG+TGG 0.543368 5_4:+60857933 None:intergenic
GGAAGCAAATGAGAAACTTA+GGG 0.544021 5_4:-60857166 Msa0861510:CDS
CTTACATCAGCTGGTGTGGT+AGG 0.544278 5_4:+60857885 None:intergenic
TTTGATTGAACAGCTTAATG+TGG 0.546992 5_4:-60856680 Msa0861510:CDS
GGTTGAGGAATTAGAAACAA+AGG 0.547465 5_4:-60856593 Msa0861510:CDS
TGCTCTTCTCGCCACCACTC+AGG 0.550863 5_4:-60856983 Msa0861510:CDS
TACTAGAAGTGAAGGAAGGA+AGG 0.551443 5_4:-60859078 Msa0861510:five_prime_UTR
AGCCGAGGTGATCCACCTGC+AGG 0.551762 5_4:-60855756 Msa0861510:CDS
AAACGAGGACCTCCGATCTA+GGG 0.552396 5_4:-60855645 Msa0861510:CDS
TTCTGTTGAATTGAAAATGT+GGG 0.553383 5_4:-60855312 Msa0861510:CDS
TTCTCAGAAGAGAATGGGCA+TGG 0.553671 5_4:-60855488 Msa0861510:CDS
ATTCTGTTGAATTGAAAATG+TGG 0.555044 5_4:-60855313 Msa0861510:CDS
GAAGGAAGAAGATGCGAGGA+AGG 0.556127 5_4:-60855345 Msa0861510:CDS
TCAGATTGAAGATTTAAAGT+CGG 0.558119 5_4:-60856071 Msa0861510:CDS
GCTGAGCTGATACGTTTGAA+GGG 0.559462 5_4:-60856838 Msa0861510:CDS
TAGTGAAAACAATACTGTAT+TGG 0.560108 5_4:-60856785 Msa0861510:CDS
AGCTGCTCAGAAGAAGGAAG+AGG 0.562975 5_4:-60857058 Msa0861510:CDS
AGAAAAGACCAAATTGGCAA+TGG 0.563558 5_4:-60856191 Msa0861510:CDS
GGAGTTTGAAGCTGCTAAGA+TGG 0.566983 5_4:-60856659 Msa0861510:CDS
ACTCTTTGCAACAGCTCTTG+GGG 0.569596 5_4:+60857317 None:intergenic
GGGCTTACTAGATTCAAAGC+TGG 0.570000 5_4:-60856818 Msa0861510:CDS
GCTACTCCAGCATCAACTCT+CGG 0.570490 5_4:-60858095 Msa0861510:CDS
ATGGATATTGTGAACTCCAA+GGG 0.570952 5_4:-60855956 Msa0861510:CDS
GAGTTAGTAAACTCGGCAGA+GGG 0.572194 5_4:-60858025 Msa0861510:CDS
TGAGACAGTTAATAAAGAGA+AGG 0.573086 5_4:-60856317 Msa0861510:CDS
GCAAGAACTTGAAAAGGCAA+AGG 0.573713 5_4:-60856734 Msa0861510:CDS
TGGTCAAATCTATATATAAG+GGG 0.574538 5_4:+60854791 None:intergenic
TGTGTATCTTCTCAGGTGGA+GGG 0.575085 5_4:+60859122 None:intergenic
TTGTGAACTCCAAGGGAGAG+TGG 0.575595 5_4:-60855949 Msa0861510:CDS
CCATGAACGATTATGAAAGA+AGG 0.576654 5_4:+60858736 None:intergenic
TGAGAAACTTAGGGAGGCAA+TGG 0.578916 5_4:-60857157 Msa0861510:CDS
GATGGATATTGTGAACTCCA+AGG 0.579671 5_4:-60855957 Msa0861510:CDS
GCAAACTTCACGCCTTTCTG+CGG 0.582741 5_4:-60857967 Msa0861510:CDS
AGAGGAAGAAACTCAACTGA+AGG 0.583288 5_4:-60855798 Msa0861510:CDS
AACTCCAAACAAAACATCCC+CGG 0.586424 5_4:-60858057 Msa0861510:CDS
TCAACTGAAGGAGAATATGA+AGG 0.589116 5_4:-60855786 Msa0861510:CDS
CCTGTTCCAGCTCAACAGCT+CGG 0.591772 5_4:+60857091 None:intergenic
ACCAGAAGAATCCTTTGAAG+AGG 0.592110 5_4:-60855240 Msa0861510:CDS
TGTGAACTCCAAGGGAGAGT+GGG 0.592754 5_4:-60855948 Msa0861510:CDS
CTAACTTACATCAGCTGGTG+TGG 0.593067 5_4:+60857881 None:intergenic
AGAGTTAGTAAACTCGGCAG+AGG 0.593574 5_4:-60858026 Msa0861510:CDS
TGAGTGCAGAATAAAGGTTG+AGG 0.594847 5_4:-60856608 Msa0861510:CDS
TACAACACGAAACACGAATG+AGG 0.595109 5_4:-60855570 Msa0861510:CDS
CAGACACATCCAAAGCATGC+TGG 0.595358 5_4:+60857004 None:intergenic
CGTGAAGTTTGCAAAGGTGA+AGG 0.595493 5_4:+60857978 None:intergenic
GAAACTTAGGGAGGCAATGG+TGG 0.596777 5_4:-60857154 Msa0861510:CDS
CTCAGAAGAAGGAAGAGGAA+TGG 0.599765 5_4:-60857053 Msa0861510:CDS
ATGATGTGCATCATTAAGCA+TGG 0.600860 5_4:+60856018 None:intergenic
AGCTACCATCAAGAAGGTGG+AGG 0.602776 5_4:-60855618 Msa0861510:CDS
GACTTGTGATGCAAAGAACC+AGG 0.603818 5_4:-60856929 Msa0861510:CDS
GAGGCAAAGAGGAGATCTTG+AGG 0.603943 5_4:-60856419 Msa0861510:CDS
ATGACAATTGGGAGGCAAAG+AGG 0.605047 5_4:-60856430 Msa0861510:CDS
ACTCCAAGAGTTAGTAAACT+CGG 0.607845 5_4:-60858032 Msa0861510:CDS
AGAGAGAGCTTGAAAGTGTG+AGG 0.609297 5_4:-60857029 Msa0861510:CDS
CTGGAGATGATGCTTTGTTG+GGG 0.612070 5_4:+60858132 None:intergenic
ACAGAGAACATTGGTGATGG+TGG 0.612489 5_4:-60855170 Msa0861510:CDS
ACAACTGCTACTAGAAGTGA+AGG 0.612778 5_4:-60859086 Msa0861510:five_prime_UTR
ATCAGCTACCATCAAGAAGG+TGG 0.613126 5_4:-60855621 Msa0861510:CDS
TATGAAGGAAGTTGAAGCCG+AGG 0.616102 5_4:-60855771 Msa0861510:CDS
AGAAGACCTAAAGAAAGCAA+AGG 0.616162 5_4:-60857262 Msa0861510:CDS
TGGTAGCTGATTCCCTAGAT+CGG 0.616393 5_4:+60855633 None:intergenic
ACTTTGCCGAGAGTTGATGC+TGG 0.616991 5_4:+60858089 None:intergenic
AGAAGCACAAAGATTGTCTG+AGG 0.617743 5_4:-60857187 Msa0861510:CDS
AAAACTTTCAGCTTCAAGCG+TGG 0.619164 5_4:-60856275 Msa0861510:CDS
AGAAGCCAGTGTGAAAAGAG+AGG 0.619361 5_4:-60855816 Msa0861510:CDS
TGGTGGAAGCTCACCAACAA+AGG 0.619554 5_4:-60855153 Msa0861510:CDS
GGAATCAGCTACCATCAAGA+AGG 0.621797 5_4:-60855624 Msa0861510:CDS
GAAGTGGAATCAAAGACAGA+TGG 0.624193 5_4:-60855218 Msa0861510:CDS
GATTCAGGCTGAGAAAGAGA+AGG 0.627619 5_4:-60857232 Msa0861510:CDS
CTGCTACTAGAAGTGAAGGA+AGG 0.632125 5_4:-60859082 Msa0861510:five_prime_UTR
TGAGCTTCATGTAGAGAAAG+CGG 0.632260 5_4:-60856872 Msa0861510:CDS
TCGTTGAAGCTCCTGAGTGG+TGG 0.632686 5_4:+60856972 None:intergenic
GTGGAATCAAAGACAGATGG+TGG 0.634087 5_4:-60855215 Msa0861510:CDS
AGATTCAAAGCTGGAAACCG+AGG 0.635398 5_4:-60856809 Msa0861510:CDS
ATAAGGGGACATGAGATGAG+AGG 0.640713 5_4:+60854806 None:intergenic
TGATCTTTCTGATAGCGAGA+AGG 0.643086 5_4:-60855540 Msa0861510:CDS
ACTAACTCTTGGAGTAGCCG+GGG 0.646262 5_4:+60858040 None:intergenic
TTCAGAGCGTTGTCTTCTCG+CGG 0.647749 5_4:-60856395 Msa0861510:CDS
GAATGTGAATGGAAAACTGA+AGG 0.653191 5_4:-60855363 Msa0861510:CDS
GAAAGGCGTGAAGTTTGCAA+AGG 0.655727 5_4:+60857972 None:intergenic
CTAGTGTGTATCTTCTCAGG+TGG 0.658145 5_4:+60859118 None:intergenic
AACTGAAGGAAGAAGATGCG+AGG 0.658723 5_4:-60855349 Msa0861510:CDS
AACTCGTTGAAGCTCCTGAG+TGG 0.663561 5_4:+60856969 None:intergenic
ATTCAAAGCCAATTGCTGAG+AGG 0.666551 5_4:-60857920 Msa0861510:CDS
TTCCTGCAGGTGGATCACCT+CGG 0.677019 5_4:+60855754 None:intergenic
GTGACAGAGAACATTGGTGA+TGG 0.683202 5_4:-60855173 Msa0861510:CDS
TCAGAAGAGAATGGGCATGG+AGG 0.685717 5_4:-60855485 Msa0861510:CDS
AGCAAATGAGAAACTTAGGG+AGG 0.687762 5_4:-60857163 Msa0861510:CDS
TAGCTGATTCCCTAGATCGG+AGG 0.695428 5_4:+60855636 None:intergenic
TGTTGGAAATGACAATTGGG+AGG 0.697195 5_4:-60856438 Msa0861510:CDS
AGTTAGTAAACTCGGCAGAG+GGG 0.711321 5_4:-60858024 Msa0861510:CDS
GCATCTGTGACAGAGAACAT+TGG 0.718063 5_4:-60855179 Msa0861510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATTAATGGAAAAATTAT+TGG + chr5_4:60854948-60854967 None:intergenic 10.0%
!!! TTTTTTTTCTTCTAAATTAA+TGG + chr5_4:60854960-60854979 None:intergenic 10.0%
!!! AAAACAAATTTTTTTAATGT+TGG - chr5_4:60854979-60854998 Msa0861510:three_prime_UTR 10.0%
!! AAAATATTAAACAAGTTTAA+TGG + chr5_4:60856511-60856530 None:intergenic 10.0%
!!! TTTTATATTTTTTGTCTATC+TGG - chr5_4:60855236-60855255 Msa0861510:CDS 15.0%
!!! TTTATATTTTTTGTCTATCT+GGG - chr5_4:60855237-60855256 Msa0861510:CDS 15.0%
!! GAAAAATTAAACATAAAGTT+GGG + chr5_4:60855325-60855344 None:intergenic 15.0%
!! ACAAAAATTTAAACAGATAA+AGG + chr5_4:60855347-60855366 None:intergenic 15.0%
!!! TATTGTGAGATTTTGATTAA+TGG - chr5_4:60855264-60855283 Msa0861510:CDS 20.0%
!!! ATTGTGAGATTTTGATTAAT+GGG - chr5_4:60855265-60855284 Msa0861510:CDS 20.0%
!! GGAAAAATTAAACATAAAGT+TGG + chr5_4:60855326-60855345 None:intergenic 20.0%
!!! AAAATTTGAACTTTAGAGTT+GGG - chr5_4:60855413-60855432 Msa0861510:CDS 20.0%
!! AAATTCATCAAGCAAAATAA+GGG + chr5_4:60855534-60855553 None:intergenic 20.0%
!! TAAATTCATCAAGCAAAATA+AGG + chr5_4:60855535-60855554 None:intergenic 20.0%
!!! TTATCTTTGTTTGTTGAATT+TGG - chr5_4:60855552-60855571 Msa0861510:CDS 20.0%
!!! TTTCTTTCCAAATTTGTTTT+TGG - chr5_4:60856086-60856105 Msa0861510:CDS 20.0%
!!! ATGATATCATGAATTTTGAT+TGG - chr5_4:60856447-60856466 Msa0861510:CDS 20.0%
!!! TTTGTTTTTCTCTTCTAATA+GGG + chr5_4:60857622-60857641 None:intergenic 20.0%
!! AAACAAACTTATCAATGAAT+TGG - chr5_4:60857635-60857654 Msa0861510:intron 20.0%
!!! TAGTATTGAAAATTCTAAGA+TGG - chr5_4:60857893-60857912 Msa0861510:CDS 20.0%
!! TTGGTCAAATCTATATATAA+GGG + chr5_4:60859081-60859100 None:intergenic 20.0%
!! TTTGGTCAAATCTATATATA+AGG + chr5_4:60859082-60859101 None:intergenic 20.0%
!!! TTTTATGTTATCCTAATTCT+AGG - chr5_4:60859125-60859144 Msa0861510:five_prime_UTR 20.0%
!! TTTATGTTATCCTAATTCTA+GGG - chr5_4:60859126-60859145 Msa0861510:five_prime_UTR 20.0%
!! GAAAACAAACTCAATTTGTT+TGG - chr5_4:60854881-60854900 Msa0861510:three_prime_UTR 25.0%
!!! AAACTCAATTTGTTTGGTTT+TGG - chr5_4:60854887-60854906 Msa0861510:three_prime_UTR 25.0%
! ATTATTGGAAGTTTAAGAAC+AGG + chr5_4:60854933-60854952 None:intergenic 25.0%
!!! AACCTCTTTTGTTTTTACTT+TGG - chr5_4:60855097-60855116 Msa0861510:CDS 25.0%
! AACCAAAGTAAAAACAAAAG+AGG + chr5_4:60855102-60855121 None:intergenic 25.0%
!!! TTTTGCTTTAAGATCTGATT+TGG - chr5_4:60855197-60855216 Msa0861510:CDS 25.0%
!!! TTTGCTTTAAGATCTGATTT+GGG - chr5_4:60855198-60855217 Msa0861510:CDS 25.0%
!!! CAAAATTTGAACTTTAGAGT+TGG - chr5_4:60855412-60855431 Msa0861510:CDS 25.0%
! CACTTTATCAAATCAGATAA+TGG + chr5_4:60855599-60855618 None:intergenic 25.0%
! ATTTAATGCAATGCTGATAT+TGG - chr5_4:60855669-60855688 Msa0861510:CDS 25.0%
!! AGTTGTTTGACAATTTTTCT+TGG - chr5_4:60856216-60856235 Msa0861510:CDS 25.0%
! TAGTGAAAACAATACTGTAT+TGG - chr5_4:60857083-60857102 Msa0861510:CDS 25.0%
!!! TTCTAGTCTTAAAGAGAAAT+TGG - chr5_4:60857404-60857423 Msa0861510:intron 25.0%
!!! TCTAGTCTTAAAGAGAAATT+GGG - chr5_4:60857405-60857424 Msa0861510:intron 25.0%
! TTTATTAACTGTCTCAATCT+CGG + chr5_4:60857547-60857566 None:intergenic 25.0%
!!! GTTTGTTTTTCTCTTCTAAT+AGG + chr5_4:60857623-60857642 None:intergenic 25.0%
!! TCAGATTGAAGATTTAAAGT+CGG - chr5_4:60857797-60857816 Msa0861510:intron 25.0%
!!! GAATATTTTTCAAGAAAACG+AGG - chr5_4:60858208-60858227 Msa0861510:intron 25.0%
! ATTCTGTTGAATTGAAAATG+TGG - chr5_4:60858555-60858574 Msa0861510:intron 25.0%
! TTCTGTTGAATTGAAAATGT+GGG - chr5_4:60858556-60858575 Msa0861510:intron 25.0%
!! TTAAAGTGTTTGCATGTATT+TGG - chr5_4:60858864-60858883 Msa0861510:five_prime_UTR 25.0%
!!! TATTGTGATTTTTTGCTTCT+TGG - chr5_4:60858889-60858908 Msa0861510:five_prime_UTR 25.0%
!!! TAGGTTTTTAAAGAATGAAG+AGG - chr5_4:60858914-60858933 Msa0861510:five_prime_UTR 25.0%
! TGGTCAAATCTATATATAAG+GGG + chr5_4:60859080-60859099 None:intergenic 25.0%
! ACAAGAAACTGAACAAGTTT+TGG + chr5_4:60855011-60855030 None:intergenic 30.0%
!! ATTAATGGGTTTGATCTGTT+TGG - chr5_4:60855279-60855298 Msa0861510:CDS 30.0%
! GTTTTTACTATCTGTGATTC+TGG - chr5_4:60855498-60855517 Msa0861510:CDS 30.0%
!!! TCCAAATTTGTTTTTGGAAG+AGG - chr5_4:60856092-60856111 Msa0861510:CDS 30.0%
! TACACTTTTCATGAGACAAT+TGG + chr5_4:60856130-60856149 None:intergenic 30.0%
TCTTAAGCAAGAACTTGAAA+AGG - chr5_4:60857128-60857147 Msa0861510:CDS 30.0%
AAAGGATTACGATGAAAAGT+TGG - chr5_4:60857152-60857171 Msa0861510:CDS 30.0%
TTTGATTGAACAGCTTAATG+TGG - chr5_4:60857188-60857207 Msa0861510:CDS 30.0%
TAAAGAGAAATTGGGAATGT+TGG - chr5_4:60857413-60857432 Msa0861510:intron 30.0%
GAATGTTGGAAATGACAATT+GGG - chr5_4:60857427-60857446 Msa0861510:intron 30.0%
TGAGACAGTTAATAAAGAGA+AGG - chr5_4:60857551-60857570 Msa0861510:intron 30.0%
TGAAGAAGAAAAGACCAAAT+TGG - chr5_4:60857671-60857690 Msa0861510:intron 30.0%
! GTTGGCTAATAGTTTTTCTT+TGG + chr5_4:60857751-60857770 None:intergenic 30.0%
CGTTGGGAAATGAAATAAAT+AGG - chr5_4:60858000-60858019 Msa0861510:CDS 30.0%
GGGAAATGAAATAAATAGGT+TGG - chr5_4:60858004-60858023 Msa0861510:CDS 30.0%
TTCTTTACTGAAAAAAACCG+AGG - chr5_4:60858028-60858047 Msa0861510:CDS 30.0%
CATATTTAAGGAAGAGCTTT+CGG - chr5_4:60858415-60858434 Msa0861510:intron 30.0%
! CAAGACAATGTTTTCTTCTT+TGG + chr5_4:60858447-60858466 None:intergenic 30.0%
CAAAGAAGAAAACATTGTCT+TGG - chr5_4:60858445-60858464 Msa0861510:intron 30.0%
!! GCAAAGTATTGTTCTATTTG+TGG + chr5_4:60858823-60858842 None:intergenic 30.0%
!! GAACAATACTTTGCTTTTGA+TGG - chr5_4:60858829-60858848 Msa0861510:five_prime_UTR 30.0%
!!! GATTTTTTGCTTCTTGGAAT+AGG - chr5_4:60858895-60858914 Msa0861510:five_prime_UTR 30.0%
AGAGGCTTGTAATATTGTTT+AGG - chr5_4:60858932-60858951 Msa0861510:five_prime_UTR 30.0%
TAGATTTGACCAAAAAGAAG+TGG - chr5_4:60859088-60859107 Msa0861510:five_prime_UTR 30.0%
!! CTTGTTTCTGACAATGTTGT+TGG - chr5_4:60855026-60855045 Msa0861510:three_prime_UTR 35.0%
CCATGAACGATTATGAAAGA+AGG + chr5_4:60855135-60855154 None:intergenic 35.0%
CCTTCTTTCATAATCGTTCA+TGG - chr5_4:60855132-60855151 Msa0861510:CDS 35.0%
AGTATGAAACTTGACAAACC+TGG + chr5_4:60855167-60855186 None:intergenic 35.0%
!! AGCAAAATAAGGGAGCATTA+GGG + chr5_4:60855524-60855543 None:intergenic 35.0%
!! AAGCAAAATAAGGGAGCATT+AGG + chr5_4:60855525-60855544 None:intergenic 35.0%
CATTGTGAACTTGATAGATC+TGG - chr5_4:60855698-60855717 Msa0861510:CDS 35.0%
ACTCCAAGAGTTAGTAAACT+CGG - chr5_4:60855836-60855855 Msa0861510:CDS 35.0%
TTACTCTAACTTACATCAGC+TGG + chr5_4:60855995-60856014 None:intergenic 35.0%
GCCTCTTCCAAAAACAAATT+TGG + chr5_4:60856096-60856115 None:intergenic 35.0%
! AAACATGGTCACACATTTTC+AGG + chr5_4:60856173-60856192 None:intergenic 35.0%
! AAGACCAACAGTCTAAAACA+TGG + chr5_4:60856188-60856207 None:intergenic 35.0%
!!! TGTTTTAGACTGTTGGTCTT+AGG - chr5_4:60856188-60856207 Msa0861510:CDS 35.0%
!! TTCTGAGATGTCCAATATGT+CGG - chr5_4:60856264-60856283 Msa0861510:CDS 35.0%
ATATTGTGAAAAGCAGCGTA+AGG - chr5_4:60856397-60856416 Msa0861510:CDS 35.0%
!! GCTGTGAAACTATTTTGAAG+CGG - chr5_4:60856475-60856494 Msa0861510:CDS 35.0%
ATTCAACTGTGTCTGCAATT+CGG + chr5_4:60856578-60856597 None:intergenic 35.0%
AGAAGACCTAAAGAAAGCAA+AGG - chr5_4:60856606-60856625 Msa0861510:CDS 35.0%
AGGAAGCAAATGAGAAACTT+AGG - chr5_4:60856701-60856720 Msa0861510:CDS 35.0%
GGAAGCAAATGAGAAACTTA+GGG - chr5_4:60856702-60856721 Msa0861510:CDS 35.0%
!! AGTATTGTTTTCACTAGCCT+CGG + chr5_4:60857079-60857098 None:intergenic 35.0%
GGTTGAGGAATTAGAAACAA+AGG - chr5_4:60857275-60857294 Msa0861510:CDS 35.0%
!!! GCAGTTCATTTTTTCCTTCT+AGG + chr5_4:60857362-60857381 None:intergenic 35.0%
GGAATGTTGGAAATGACAAT+TGG - chr5_4:60857426-60857445 Msa0861510:intron 35.0%
AGAAAAGACCAAATTGGCAA+TGG - chr5_4:60857677-60857696 Msa0861510:intron 35.0%
TAAGCTATCCATTGCCAATT+TGG + chr5_4:60857688-60857707 None:intergenic 35.0%
ATGATGTGCATCATTAAGCA+TGG + chr5_4:60857853-60857872 None:intergenic 35.0%
ATGGATATTGTGAACTCCAA+GGG - chr5_4:60857912-60857931 Msa0861510:CDS 35.0%
TCAACTGAAGGAGAATATGA+AGG - chr5_4:60858082-60858101 Msa0861510:CDS 35.0%
GAAGTTGAAGGAGAGTTTAT+TGG - chr5_4:60858166-60858185 Msa0861510:intron 35.0%
TCTGAGAACTCTACTACTTT+AGG + chr5_4:60858368-60858387 None:intergenic 35.0%
TAGAGTTCTCAGAAGAGAAT+GGG - chr5_4:60858375-60858394 Msa0861510:intron 35.0%
AGGAGAAGGTAGCATATTTA+AGG - chr5_4:60858403-60858422 Msa0861510:intron 35.0%
! AGTTTTCCATTCACATTCTC+AGG + chr5_4:60858503-60858522 None:intergenic 35.0%
GAATGTGAATGGAAAACTGA+AGG - chr5_4:60858505-60858524 Msa0861510:intron 35.0%
TTGATCACTTGTTCCTTTGT+TGG + chr5_4:60858731-60858750 None:intergenic 35.0%
! TACCACTCTTTTTCTTCAAC+AGG + chr5_4:60858790-60858809 None:intergenic 35.0%
!! TTCAACTTGCCACTTCTTTT+TGG + chr5_4:60859100-60859119 None:intergenic 35.0%
CTACTAGTGTGTATCTTCTC+AGG + chr5_4:60854756-60854775 None:intergenic 40.0%
ACAACTGCTACTAGAAGTGA+AGG - chr5_4:60854782-60854801 Msa0861510:three_prime_UTR 40.0%
TACTAGAAGTGAAGGAAGGA+AGG - chr5_4:60854790-60854809 Msa0861510:three_prime_UTR 40.0%
!! AGTTTGTTTTCCTGTCTCCA+AGG + chr5_4:60854872-60854891 None:intergenic 40.0%
!!! GATGTTTTGTTTGGAGTTGC+TGG + chr5_4:60855809-60855828 None:intergenic 40.0%
AACTCCAAACAAAACATCCC+CGG - chr5_4:60855811-60855830 Msa0861510:CDS 40.0%
TTACTAACTCTTGGAGTAGC+CGG + chr5_4:60855833-60855852 None:intergenic 40.0%
!! GGCTTTGAATTCAAAGATCG+TGG + chr5_4:60855938-60855957 None:intergenic 40.0%
ATTCAAAGCCAATTGCTGAG+AGG - chr5_4:60855948-60855967 Msa0861510:CDS 40.0%
AACTCGATCTCAGAGAAAGA+AGG + chr5_4:60856032-60856051 None:intergenic 40.0%
!! CTCTGAGATCGAGTTATGTT+TGG - chr5_4:60856037-60856056 Msa0861510:CDS 40.0%
!! GTTTGGCTTGATTAGACAGT+TGG - chr5_4:60856054-60856073 Msa0861510:CDS 40.0%
!! GTGACCATGTTTTAGACTGT+TGG - chr5_4:60856181-60856200 Msa0861510:CDS 40.0%
ACAGTTCACTACCGACATAT+TGG + chr5_4:60856278-60856297 None:intergenic 40.0%
AACTCTTTGCAACAGCTCTT+GGG + chr5_4:60856555-60856574 None:intergenic 40.0%
GCTGTTCCTTTGCTTTCTTT+AGG + chr5_4:60856615-60856634 None:intergenic 40.0%
! AGAAGCACAAAGATTGTCTG+AGG - chr5_4:60856681-60856700 Msa0861510:CDS 40.0%
AGCAAATGAGAAACTTAGGG+AGG - chr5_4:60856705-60856724 Msa0861510:CDS 40.0%
AATTGAAGCTGCTCAGAAGA+AGG - chr5_4:60856804-60856823 Msa0861510:CDS 40.0%
!!! AGCAATTTTAGCTGCATCGT+CGG + chr5_4:60856977-60856996 None:intergenic 40.0%
TGAGCTTCATGTAGAGAAAG+CGG - chr5_4:60856996-60857015 Msa0861510:CDS 40.0%
AGAGAAAGCGGAGATTCTTT+CGG - chr5_4:60857008-60857027 Msa0861510:CDS 40.0%
GCAAGAACTTGAAAAGGCAA+AGG - chr5_4:60857134-60857153 Msa0861510:CDS 40.0%
GCTAGATGAGTGCAGAATAA+AGG - chr5_4:60857254-60857273 Msa0861510:CDS 40.0%
TGAGTGCAGAATAAAGGTTG+AGG - chr5_4:60857260-60857279 Msa0861510:CDS 40.0%
TGTTGGAAATGACAATTGGG+AGG - chr5_4:60857430-60857449 Msa0861510:intron 40.0%
AAAACTTTCAGCTTCAAGCG+TGG - chr5_4:60857593-60857612 Msa0861510:intron 40.0%
GATGGATATTGTGAACTCCA+AGG - chr5_4:60857911-60857930 Msa0861510:CDS 40.0%
TGAAGAAGAAAACTCGTCGT+TGG - chr5_4:60857983-60858002 Msa0861510:CDS 40.0%
GAAGAAGAAAACTCGTCGTT+GGG - chr5_4:60857984-60858003 Msa0861510:CDS 40.0%
! TTCTTCCTCTCTTTTCACAC+TGG + chr5_4:60858060-60858079 None:intergenic 40.0%
AGAGGAAGAAACTCAACTGA+AGG - chr5_4:60858070-60858089 Msa0861510:CDS 40.0%
TACAACACGAAACACGAATG+AGG - chr5_4:60858298-60858317 Msa0861510:intron 40.0%
CGAAACACGAATGAGGAAAA+TGG - chr5_4:60858305-60858324 Msa0861510:intron 40.0%
! TGATCTTTCTGATAGCGAGA+AGG - chr5_4:60858328-60858347 Msa0861510:intron 40.0%
GTAGAGTTCTCAGAAGAGAA+TGG - chr5_4:60858374-60858393 Msa0861510:intron 40.0%
TAAGGAAGAGCTTTCGGTTT+CGG - chr5_4:60858421-60858440 Msa0861510:intron 40.0%
! CCATTCACATTCTCAGGTTT+TGG + chr5_4:60858497-60858516 None:intergenic 40.0%
CCAAAACCTGAGAATGTGAA+TGG - chr5_4:60858494-60858513 Msa0861510:intron 40.0%
! AAAGAGTTTTCGCCAGAGAA+AGG - chr5_4:60858599-60858618 Msa0861510:intron 40.0%
! ACCAGAAGAATCCTTTGAAG+AGG - chr5_4:60858628-60858647 Msa0861510:intron 40.0%
TCCTCTTCAAAGGATTCTTC+TGG + chr5_4:60858632-60858651 None:intergenic 40.0%
! AGAATCCTTTGAAGAGGAAG+TGG - chr5_4:60858634-60858653 Msa0861510:intron 40.0%
TGATTCCACTTCCTCTTCAA+AGG + chr5_4:60858642-60858661 None:intergenic 40.0%
GAAGTGGAATCAAAGACAGA+TGG - chr5_4:60858650-60858669 Msa0861510:intron 40.0%
AAGAAGAAGAAGCCTTTGCT+TGG - chr5_4:60858752-60858771 Msa0861510:five_prime_UTR 40.0%
AGCCTGTTGAAGAAAAAGAG+TGG - chr5_4:60858785-60858804 Msa0861510:five_prime_UTR 40.0%
! AGTTGCACACTTTTGCATGT+TGG - chr5_4:60858980-60858999 Msa0861510:five_prime_UTR 40.0%
GAGAGGAAAGCAGAATAAAG+TGG + chr5_4:60859048-60859067 None:intergenic 40.0%
TCTGAACGTTCCCTAGAATT+AGG + chr5_4:60859139-60859158 None:intergenic 40.0%
TGTGTATCTTCTCAGGTGGA+GGG + chr5_4:60854749-60854768 None:intergenic 45.0%
CTAGTGTGTATCTTCTCAGG+TGG + chr5_4:60854753-60854772 None:intergenic 45.0%
CTGCTACTAGAAGTGAAGGA+AGG - chr5_4:60854786-60854805 Msa0861510:three_prime_UTR 45.0%
AGAAGTGAAGGAAGGAAGGA+AGG - chr5_4:60854794-60854813 Msa0861510:three_prime_UTR 45.0%
! TTGTTTTCCTGTCTCCAAGG+TGG + chr5_4:60854869-60854888 None:intergenic 45.0%
CGTTCATGGCTTCAAAATCC+AGG - chr5_4:60855146-60855165 Msa0861510:CDS 45.0%
! CTGGAGATGATGCTTTGTTG+GGG + chr5_4:60855739-60855758 None:intergenic 45.0%
! GCTGGAGATGATGCTTTGTT+GGG + chr5_4:60855740-60855759 None:intergenic 45.0%
AGCTGGAGATGATGCTTTGT+TGG + chr5_4:60855741-60855760 None:intergenic 45.0%
!! GTAGCTTTGTTAGGAGTAGC+TGG + chr5_4:60855758-60855777 None:intergenic 45.0%
!! GATGCTGGAGTAGCTTTGTT+AGG + chr5_4:60855767-60855786 None:intergenic 45.0%
!!! GTTTTGTTTGGAGTTGCTGG+TGG + chr5_4:60855806-60855825 None:intergenic 45.0%
TACTAACTCTTGGAGTAGCC+GGG + chr5_4:60855832-60855851 None:intergenic 45.0%
CTGCCGAGTTTACTAACTCT+TGG + chr5_4:60855842-60855861 None:intergenic 45.0%
AGAGTTAGTAAACTCGGCAG+AGG - chr5_4:60855842-60855861 Msa0861510:CDS 45.0%
GAGTTAGTAAACTCGGCAGA+GGG - chr5_4:60855843-60855862 Msa0861510:CDS 45.0%
AGTTAGTAAACTCGGCAGAG+GGG - chr5_4:60855844-60855863 Msa0861510:CDS 45.0%
CGTGAAGTTTGCAAAGGTGA+AGG + chr5_4:60855893-60855912 None:intergenic 45.0%
! GAAAGGCGTGAAGTTTGCAA+AGG + chr5_4:60855899-60855918 None:intergenic 45.0%
CTAACTTACATCAGCTGGTG+TGG + chr5_4:60855990-60856009 None:intergenic 45.0%
!! GCTGCAGTCATGCTTTTTGT+TGG - chr5_4:60856349-60856368 Msa0861510:CDS 45.0%
ACTCTTTGCAACAGCTCTTG+GGG + chr5_4:60856554-60856573 None:intergenic 45.0%
GAACTCTTTGCAACAGCTCT+TGG + chr5_4:60856556-60856575 None:intergenic 45.0%
! AGCAAAGGAACAGCTGATTC+AGG - chr5_4:60856621-60856640 Msa0861510:CDS 45.0%
GATTCAGGCTGAGAAAGAGA+AGG - chr5_4:60856636-60856655 Msa0861510:CDS 45.0%
TGAGAAACTTAGGGAGGCAA+TGG - chr5_4:60856711-60856730 Msa0861510:CDS 45.0%
CTCAGAAGAAGGAAGAGGAA+TGG - chr5_4:60856815-60856834 Msa0861510:CDS 45.0%
! AGAGAGAGCTTGAAAGTGTG+AGG - chr5_4:60856839-60856858 Msa0861510:CDS 45.0%
GACTTGTGATGCAAAGAACC+AGG - chr5_4:60856939-60856958 Msa0861510:CDS 45.0%
GCTGAGCTGATACGTTTGAA+GGG - chr5_4:60857030-60857049 Msa0861510:CDS 45.0%
GGGCTTACTAGATTCAAAGC+TGG - chr5_4:60857050-60857069 Msa0861510:CDS 45.0%
AGATTCAAAGCTGGAAACCG+AGG - chr5_4:60857059-60857078 Msa0861510:CDS 45.0%
! GGAGTTTGAAGCTGCTAAGA+TGG - chr5_4:60857209-60857228 Msa0861510:CDS 45.0%
GTGTTTCGTTGCAGTTTCCA+AGG + chr5_4:60857340-60857359 None:intergenic 45.0%
ACTGCAACGAAACACCTAGA+AGG - chr5_4:60857345-60857364 Msa0861510:intron 45.0%
ATGACAATTGGGAGGCAAAG+AGG - chr5_4:60857438-60857457 Msa0861510:intron 45.0%
!! TTTCACACTGGCTTCTTCCT+CGG + chr5_4:60858048-60858067 None:intergenic 45.0%
AGAAGCCAGTGTGAAAAGAG+AGG - chr5_4:60858052-60858071 Msa0861510:CDS 45.0%
TATGAAGGAAGTTGAAGCCG+AGG - chr5_4:60858097-60858116 Msa0861510:CDS 45.0%
CTTCTTTAAGTGCTTCCTGC+AGG + chr5_4:60858130-60858149 None:intergenic 45.0%
! AGCTGAGAGCATGAAGTTGA+AGG - chr5_4:60858154-60858173 Msa0861510:CDS 45.0%
! TGGTAGCTGATTCCCTAGAT+CGG + chr5_4:60858238-60858257 None:intergenic 45.0%
GGAATCAGCTACCATCAAGA+AGG - chr5_4:60858244-60858263 Msa0861510:intron 45.0%
ATCAGCTACCATCAAGAAGG+TGG - chr5_4:60858247-60858266 Msa0861510:intron 45.0%
TAACTCCTCCACCTTCTTGA+TGG + chr5_4:60858258-60858277 None:intergenic 45.0%
TTCTCAGAAGAGAATGGGCA+TGG - chr5_4:60858380-60858399 Msa0861510:intron 45.0%
AACTGAAGGAAGAAGATGCG+AGG - chr5_4:60858519-60858538 Msa0861510:intron 45.0%
GTGGAATCAAAGACAGATGG+TGG - chr5_4:60858653-60858672 Msa0861510:intron 45.0%
! ACAGATGGTGGTGAGACAAA+TGG - chr5_4:60858665-60858684 Msa0861510:intron 45.0%
GCATCTGTGACAGAGAACAT+TGG - chr5_4:60858689-60858708 Msa0861510:intron 45.0%
GTGACAGAGAACATTGGTGA+TGG - chr5_4:60858695-60858714 Msa0861510:intron 45.0%
!! ACAGAGAACATTGGTGATGG+TGG - chr5_4:60858698-60858717 Msa0861510:intron 45.0%
AAGCCTTTGCTTGGCAAGTT+TGG - chr5_4:60858761-60858780 Msa0861510:five_prime_UTR 45.0%
CTTCCAAACTTGCCAAGCAA+AGG + chr5_4:60858767-60858786 None:intergenic 45.0%
ATAAGGGGACATGAGATGAG+AGG + chr5_4:60859065-60859084 None:intergenic 45.0%
GTGTGTATCTTCTCAGGTGG+AGG + chr5_4:60854750-60854769 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGTG+TGG - chr5_4:60854843-60854862 Msa0861510:three_prime_UTR 50.0%
GCTACTCCAGCATCAACTCT+CGG - chr5_4:60855773-60855792 Msa0861510:CDS 50.0%
!! ACTTTGCCGAGAGTTGATGC+TGG + chr5_4:60855782-60855801 None:intergenic 50.0%
!! GTAGCCGGGGATGTTTTGTT+TGG + chr5_4:60855818-60855837 None:intergenic 50.0%
ACTAACTCTTGGAGTAGCCG+GGG + chr5_4:60855831-60855850 None:intergenic 50.0%
GCAAACTTCACGCCTTTCTG+CGG - chr5_4:60855901-60855920 Msa0861510:CDS 50.0%
!!! GCGATGCTTTTTCCGCAGAA+AGG + chr5_4:60855916-60855935 None:intergenic 50.0%
GGCGATTTCCTCTCAGCAAT+TGG + chr5_4:60855959-60855978 None:intergenic 50.0%
CTTACATCAGCTGGTGTGGT+AGG + chr5_4:60855986-60856005 None:intergenic 50.0%
GAAACTTAGGGAGGCAATGG+TGG - chr5_4:60856714-60856733 Msa0861510:CDS 50.0%
AGCTGCTCAGAAGAAGGAAG+AGG - chr5_4:60856810-60856829 Msa0861510:CDS 50.0%
TGTGAGGAACCAGCATGCTT+TGG - chr5_4:60856855-60856874 Msa0861510:CDS 50.0%
CAGACACATCCAAAGCATGC+TGG + chr5_4:60856867-60856886 None:intergenic 50.0%
AACTCGTTGAAGCTCCTGAG+TGG + chr5_4:60856902-60856921 None:intergenic 50.0%
GGCTGAGCTGATACGTTTGA+AGG - chr5_4:60857029-60857048 Msa0861510:CDS 50.0%
GAGATCTGCGTCATTGTCCT+TGG - chr5_4:60857320-60857339 Msa0861510:CDS 50.0%
GAGGCAAAGAGGAGATCTTG+AGG - chr5_4:60857449-60857468 Msa0861510:intron 50.0%
!! TTCAGAGCGTTGTCTTCTCG+CGG - chr5_4:60857473-60857492 Msa0861510:intron 50.0%
TTGTGAACTCCAAGGGAGAG+TGG - chr5_4:60857919-60857938 Msa0861510:CDS 50.0%
TGTGAACTCCAAGGGAGAGT+GGG - chr5_4:60857920-60857939 Msa0861510:CDS 50.0%
CTTTAAGTGCTTCCTGCAGG+TGG + chr5_4:60858127-60858146 None:intergenic 50.0%
AAAACGAGGACCTCCGATCT+AGG - chr5_4:60858222-60858241 Msa0861510:intron 50.0%
AAACGAGGACCTCCGATCTA+GGG - chr5_4:60858223-60858242 Msa0861510:intron 50.0%
! TAGCTGATTCCCTAGATCGG+AGG + chr5_4:60858235-60858254 None:intergenic 50.0%
AGCTACCATCAAGAAGGTGG+AGG - chr5_4:60858250-60858269 Msa0861510:intron 50.0%
TCAGAAGAGAATGGGCATGG+AGG - chr5_4:60858383-60858402 Msa0861510:intron 50.0%
GAAGGAAGAAGATGCGAGGA+AGG - chr5_4:60858523-60858542 Msa0861510:intron 50.0%
! GTTTTCGCCAGAGAAAGGAG+CGG - chr5_4:60858604-60858623 Msa0861510:intron 50.0%
TGGTGGAAGCTCACCAACAA+AGG - chr5_4:60858715-60858734 Msa0861510:intron 50.0%
!! CGGCAGAGGGGTATCTAAAC+CGG - chr5_4:60855856-60855875 Msa0861510:CDS 55.0%
GGTGAAGGCGACTCAGATTC+CGG + chr5_4:60855878-60855897 None:intergenic 55.0%
TCAGCTGGTGTGGTAGGTCT+CGG + chr5_4:60855980-60855999 None:intergenic 55.0%
GAAGTTCCGAGCTGTTGAGC+TGG - chr5_4:60856771-60856790 Msa0861510:CDS 55.0%
CCTGTTCCAGCTCAACAGCT+CGG + chr5_4:60856780-60856799 None:intergenic 55.0%
TCGTTGAAGCTCCTGAGTGG+TGG + chr5_4:60856899-60856918 None:intergenic 55.0%
GCTTTCGCGTTCAGCTTGGT+TGG + chr5_4:60857769-60857788 None:intergenic 55.0%
CGTAGCTTTCGCGTTCAGCT+TGG + chr5_4:60857773-60857792 None:intergenic 55.0%
TTTCTGCTCCCACTCTCCCT+TGG + chr5_4:60857931-60857950 None:intergenic 55.0%
TTCCTGCAGGTGGATCACCT+CGG + chr5_4:60858117-60858136 None:intergenic 55.0%
GAGAATGGGCATGGAGGAGA+AGG - chr5_4:60858389-60858408 Msa0861510:intron 55.0%
! TCTGGTTCCGCTCCTTTCTC+TGG + chr5_4:60858614-60858633 None:intergenic 55.0%
! GAGAGAGAGTGTGGCCACCT+TGG - chr5_4:60854852-60854871 Msa0861510:three_prime_UTR 60.0%
AGTGTGGCCACCTTGGAGAC+AGG - chr5_4:60854859-60854878 Msa0861510:three_prime_UTR 60.0%
CCGAGCTGTTGAGCTGGAAC+AGG - chr5_4:60856777-60856796 Msa0861510:CDS 60.0%
GCTGTTGAGCTGGAACAGGC+TGG - chr5_4:60856781-60856800 Msa0861510:CDS 60.0%
TGCTCTTCTCGCCACCACTC+AGG - chr5_4:60856885-60856904 Msa0861510:CDS 60.0%
GCGTTGTCTTCTCGCGGCTA+AGG - chr5_4:60857479-60857498 Msa0861510:intron 60.0%
CGTCGGCATGACTCAGTGCC+TGG + chr5_4:60856960-60856979 None:intergenic 65.0%
AGCCGAGGTGATCCACCTGC+AGG - chr5_4:60858112-60858131 Msa0861510:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 60854718 60859172 60854718 ID=Msa0861510;Name=Msa0861510
chr5_4 mRNA 60854718 60859172 60854718 ID=Msa0861510-mRNA-1;Parent=Msa0861510;Name=Msa0861510-mRNA-1;_AED=0.00;_eAED=0.00;_QI=433|1|1|1|1|1|3|343|862
chr5_4 exon 60854718 60857346 60854718 ID=Msa0861510-mRNA-1:exon:18812;Parent=Msa0861510-mRNA-1
chr5_4 exon 60857890 60858175 60857890 ID=Msa0861510-mRNA-1:exon:18811;Parent=Msa0861510-mRNA-1
chr5_4 exon 60858723 60859172 60858723 ID=Msa0861510-mRNA-1:exon:18810;Parent=Msa0861510-mRNA-1
chr5_4 five_prime_UTR 60858740 60859172 60858740 ID=Msa0861510-mRNA-1:five_prime_utr;Parent=Msa0861510-mRNA-1
chr5_4 CDS 60858723 60858739 60858723 ID=Msa0861510-mRNA-1:cds;Parent=Msa0861510-mRNA-1
chr5_4 CDS 60857890 60858175 60857890 ID=Msa0861510-mRNA-1:cds;Parent=Msa0861510-mRNA-1
chr5_4 CDS 60855061 60857346 60855061 ID=Msa0861510-mRNA-1:cds;Parent=Msa0861510-mRNA-1
chr5_4 three_prime_UTR 60854718 60855060 60854718 ID=Msa0861510-mRNA-1:three_prime_utr;Parent=Msa0861510-mRNA-1
Gene Sequence

>Msa0861510

ATGGCTTCAAAATCCAGATCTGGTTTATCTGAAACACTCCCCAACAAAGCATCATCTCCAGCTACTCCTAACAAAGCTACTCCAGCATCAACTCTCGGCAAAGTACCACCAGCAACTCCAAACAAAACATCCCCGGCTACTCCAAGAGTTAGTAAACTCGGCAGAGGGGTATCTAAACCGGAATCTGAGTCGCCTTCACCTTTGCAAACTTCACGCCTTTCTGCGGAAAAAGCATCGCCACGATCTTTGAATTCAAAGCCAATTGCTGAGAGGAAATCGCCGAGACCTACCACACCAGCTGATAAGCATACCCCAAGAGCTGTTGCAAAGAGTTCCGAATTGCAGACACAGTTGAATGTCGCTCAAGAAGACCTAAAGAAAGCAAAGGAACAGCTGATTCAGGCTGAGAAAGAGAAGGAAAAAGCAATAAATGAGCTGAAAGAAGCACAAAGATTGTCTGAGGAAGCAAATGAGAAACTTAGGGAGGCAATGGTGGCTCAAAAGCGTGCTGAAGATGATTCTGAGATTGAGAAGTTCCGAGCTGTTGAGCTGGAACAGGCTGGAATTGAAGCTGCTCAGAAGAAGGAAGAGGAATGGCAGAGAGAGCTTGAAAGTGTGAGGAACCAGCATGCTTTGGATGTGTCTGCTCTTCTCGCCACCACTCAGGAGCTTCAACGAGTTAAGCAAGAACTTGTAATGACTTGTGATGCAAAGAACCAGGCACTGAGTCATGCCGACGATGCAGCTAAAATTGCTGAGCTTCATGTAGAGAAAGCGGAGATTCTTTCGGCTGAGCTGATACGTTTGAAGGGCTTACTAGATTCAAAGCTGGAAACCGAGGCTAGTGAAAACAATACTGTATTGGAGCTGCAAAAAGAGATTGAAGCTCTTAAGCAAGAACTTGAAAAGGCAAAGGATTACGATGAAAAGTTGGCAGAGAAAGAGAATTTGATTGAACAGCTTAATGTGGAGTTTGAAGCTGCTAAGATGGCTGAATCTTATGCGCGTAGTGTGCTAGATGAGTGCAGAATAAAGGTTGAGGAATTAGAAACAAAGGTTGAAGAAGCAAATCAGTTAGAGAGATCTGCGTCATTGTCCTTGGAAACTGCAACGAAACACCTAGAAGGAAAAAATGAACTGCTGCATGATGCAGAATCTGAAATTTCTAGTCTTAAAGAGAAATTGGGAATGTTGGAAATGACAATTGGGAGGCAAAGAGGAGATCTTGAGGATTCAGAGCGTTGTCTTCTCGCGGCTAAGGAAGAAAATATTGAAATGTCGAAGAAGATTGAATCTCTTGAGTCCGAGATTGAGACAGTTAATAAAGAGAAGGCTCAAGCTTTGAACAATGAAAAACTTTCAGCTTCAAGCGTGGAAACCCTATTAGAAGAGAAAAACAAACTTATCAATGAATTGGAGATTTGTAGAGATGAAGAAGAAAAGACCAAATTGGCAATGGATAGCTTAGCTTCTGCGTTACATGAAGTATCTGCAGAAGCTAGAGATACCAAAGAAAAACTATTAGCCAACCAAGCTGAACGCGAAAGCTACGTGACTCAGATTGAAGATTTAAAGTCGGATTTAGAAGCTAGCAAAGAAAAATATGAGTCCATGCTTAATGATGCACATCATGAGATTGATGTTCTTACATCTAGTATTGAAAATTCTAAGATGGATATTGTGAACTCCAAGGGAGAGTGGGAGCAGAAAGAACATGATCTTGTCGAGTGCATAAAGAGAACTGAAGAAGAAAACTCGTCGTTGGGAAATGAAATAAATAGGTTGGTTTCTTTACTGAAAAAAACCGAGGAAGAAGCCAGTGTGAAAAGAGAGGAAGAAACTCAACTGAAGGAGAATATGAAGGAAGTTGAAGCCGAGGTGATCCACCTGCAGGAAGCACTTAAAGAAGCACAAGCTGAGAGCATGAAGTTGAAGGAGAGTTTATTGGATAAAGAAAACGAGTTTCAGAATATTTTTCAAGAAAACGAGGACCTCCGATCTAGGGAATCAGCTACCATCAAGAAGGTGGAGGAGTTATCTAAGTCGCTCGAAGAAGCTACAACACGAAACACGAATGAGGAAAATGGTGATCTTTCTGATAGCGAGAAGGACTACGATTTGCTTCCTAAAGTAGTAGAGTTCTCAGAAGAGAATGGGCATGGAGGAGAAGGTAGCATATTTAAGGAAGAGCTTTCGGTTTCGGCCAAAGAAGAAAACATTGTCTTGGATGACAAGTTTGAAAAAACAGAATCTCCAAAACCTGAGAATGTGAATGGAAAACTGAAGGAAGAAGATGCGAGGAAGGAGAAAGATGATTCTGTTGAATTGAAAATGTGGGAGAGCTGCAAGATAGAGAAAAAAGAGTTTTCGCCAGAGAAAGGAGCGGAACCAGAAGAATCCTTTGAAGAGGAAGTGGAATCAAAGACAGATGGTGGTGAGACAAATGGAGCATCTGTGACAGAGAACATTGGTGATGGTGGAAGCTCACCAACAAAGGAACAAGTGATCAAGAAGAAGAAGAAGCCTTTGCTTGGCAAGTTTGGAAGCCTGTTGAAGAAAAAGAGTGGTAGCAATAGCAACCACAAATAG

Protein sequence

>Msa0861510

MASKSRSGLSETLPNKASSPATPNKATPASTLGKVPPATPNKTSPATPRVSKLGRGVSKPESESPSPLQTSRLSAEKASPRSLNSKPIAERKSPRPTTPADKHTPRAVAKSSELQTQLNVAQEDLKKAKEQLIQAEKEKEKAINELKEAQRLSEEANEKLREAMVAQKRAEDDSEIEKFRAVELEQAGIEAAQKKEEEWQRELESVRNQHALDVSALLATTQELQRVKQELVMTCDAKNQALSHADDAAKIAELHVEKAEILSAELIRLKGLLDSKLETEASENNTVLELQKEIEALKQELEKAKDYDEKLAEKENLIEQLNVEFEAAKMAESYARSVLDECRIKVEELETKVEEANQLERSASLSLETATKHLEGKNELLHDAESEISSLKEKLGMLEMTIGRQRGDLEDSERCLLAAKEENIEMSKKIESLESEIETVNKEKAQALNNEKLSASSVETLLEEKNKLINELEICRDEEEKTKLAMDSLASALHEVSAEARDTKEKLLANQAERESYVTQIEDLKSDLEASKEKYESMLNDAHHEIDVLTSSIENSKMDIVNSKGEWEQKEHDLVECIKRTEEENSSLGNEINRLVSLLKKTEEEASVKREEETQLKENMKEVEAEVIHLQEALKEAQAESMKLKESLLDKENEFQNIFQENEDLRSRESATIKKVEELSKSLEEATTRNTNEENGDLSDSEKDYDLLPKVVEFSEENGHGGEGSIFKEELSVSAKEENIVLDDKFEKTESPKPENVNGKLKEEDARKEKDDSVELKMWESCKIEKKEFSPEKGAEPEESFEEEVESKTDGGETNGASVTENIGDGGSSPTKEQVIKKKKKPLLGKFGSLLKKKSGSNSNHK*