AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0861530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0861530 MtrunA17_Chr5g0395261 94.138 887 27 1 1 862 1 887 0.0 1620
Msa0861530 MtrunA17_Chr4g0039981 66.705 859 256 12 26 858 2 856 0.0 971
Msa0861530 MtrunA17_Chr3g0123761 32.102 352 212 5 338 689 83 407 1.77e-23 105
Msa0861530 MtrunA17_Chr7g0263701 29.412 238 134 6 35 263 10 222 1.77e-11 67.8
Msa0861530 MtrunA17_Chr1g0181611 31.720 186 99 5 92 263 47 218 2.58e-11 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0861530 AT5G16730.1 50.771 843 371 16 45 858 24 851 0.0 611
Msa0861530 AT3G02930.1 48.724 862 380 10 1 858 1 804 0.0 576
Msa0861530 AT3G02930.3 48.724 862 380 10 1 858 1 804 0.0 576
Msa0861530 AT3G02930.2 50.000 824 376 9 39 858 11 802 0.0 575
Msa0861530 AT1G65010.1 51.994 627 297 3 56 681 28 651 2.04e-165 516
Msa0861530 AT1G65010.1 36.949 295 128 13 601 851 1054 1334 3.01e-22 103
Msa0861530 AT4G27595.1 46.879 721 340 10 1 715 1 684 9.21e-161 501
Msa0861530 AT4G27595.2 48.538 684 334 9 39 715 3 675 1.21e-159 498
Msa0861530 AT4G40020.1 34.375 256 157 2 430 685 123 367 1.14e-19 94.7
Msa0861530 AT2G37080.1 32.203 295 144 13 39 329 13 255 1.09e-16 85.1
Msa0861530 AT2G37080.2 32.203 295 144 13 39 329 13 255 1.09e-16 85.1
Msa0861530 AT2G37080.3 32.203 295 142 14 39 329 13 253 8.80e-16 82.0

Find 193 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTAGTCTTAAAGAGAAAT+TGG 0.158453 5_4:+60883687 Msa0861530:CDS
AGAGAGAGAAACATTGATTT+TGG 0.172929 5_4:+60881106 Msa0861530:five_prime_UTR
TTTGGTCAAATCTATATATA+AGG 0.197284 5_4:-60885357 None:intergenic
CCATTCACATTCTCAGGTTT+TGG 0.207509 5_4:-60884777 None:intergenic
TTAAAGTGTTTGCATGTATT+TGG 0.209032 5_4:+60885147 Msa0861530:three_prime_UTR
AAACTCAATTTGTTTGGTTT+TGG 0.239482 5_4:+60881183 Msa0861530:five_prime_UTR
AGGAGAAGGTAGCATATTTA+AGG 0.244355 5_4:+60884686 Msa0861530:CDS
TCTGAACGTTCCCTAGAATT+AGG 0.246386 5_4:-60885414 None:intergenic
TGACAGAATATAGAAAATTC+AGG 0.256253 5_4:+60880753 None:intergenic
GAAGTTGAAGGAGAGTTTAT+TGG 0.258244 5_4:+60884449 Msa0861530:CDS
AAGCCTTTGCTTGGCAAGTT+TGG 0.262872 5_4:+60885044 Msa0861530:CDS
ACAAGAAACTGAACAAGTTT+TGG 0.275046 5_4:-60881304 None:intergenic
TAAGCTATCCATTGCCAATT+TGG 0.275956 5_4:-60883968 None:intergenic
TCTGAGAACTCTACTACTTT+AGG 0.280952 5_4:-60884648 None:intergenic
TACTAGTGTGTATCTTCTTC+AGG 0.288736 5_4:-60880803 None:intergenic
TTGATCACTTGTTCCTTTGT+TGG 0.293101 5_4:-60885011 None:intergenic
GAACTCTTTGCAACAGCTCT+TGG 0.298444 5_4:-60882836 None:intergenic
CGTTGGGAAATGAAATAAAT+AGG 0.301005 5_4:+60884283 Msa0861530:CDS
CTTGTTTCTGACAATGTTGT+TGG 0.305488 5_4:+60881322 Msa0861530:five_prime_UTR
CCTTCTTTCATAATCGTTCA+TGG 0.307900 5_4:+60881428 Msa0861530:exon
TAAGGAAGAGCTTTCGGTTT+CGG 0.323233 5_4:+60884704 Msa0861530:CDS
TCCTCTTCAAAGGATTCTTC+TGG 0.326731 5_4:-60884912 None:intergenic
AGAGGCTTGTAATATTGTTT+AGG 0.329265 5_4:+60885215 Msa0861530:three_prime_UTR
TTGGTCAAATCTATATATAA+GGG 0.337076 5_4:-60885356 None:intergenic
GCTGTTCCTTTGCTTTCTTT+AGG 0.338674 5_4:-60882895 None:intergenic
AACTCTTTGCAACAGCTCTT+GGG 0.339786 5_4:-60882835 None:intergenic
GATGCTGGAGTAGCTTTGTT+AGG 0.349309 5_4:-60882064 None:intergenic
GGCGATTTCCTCTCAGCAAT+TGG 0.351711 5_4:-60882256 None:intergenic
CATATTTAAGGAAGAGCTTT+CGG 0.351877 5_4:+60884698 Msa0861530:CDS
AAAACGAGGACCTCCGATCT+AGG 0.357947 5_4:+60884505 Msa0861530:CDS
AAACAAACTTATCAATGAAT+TGG 0.359829 5_4:+60883918 Msa0861530:CDS
GAAAACAAACTCAATTTGTT+TGG 0.360452 5_4:+60881177 Msa0861530:five_prime_UTR
CGAAACACGAATGAGGAAAA+TGG 0.362443 5_4:+60884588 Msa0861530:CDS
GCAACGTATTGTTCTATTTG+TGG 0.367285 5_4:-60885103 None:intergenic
TCTGGTTCCGCTCCTTTCTC+TGG 0.369901 5_4:-60884894 None:intergenic
GGCTGAGCTGATACGTTTGA+AGG 0.375509 5_4:+60883312 Msa0861530:CDS
TAAAGAGAAATTGGGAATGT+TGG 0.380347 5_4:+60883696 Msa0861530:CDS
GGTGAAGGCGACTCAGATTC+CGG 0.382732 5_4:-60882175 None:intergenic
TTTCTGCTCCCACTCTCCCT+TGG 0.387561 5_4:-60884211 None:intergenic
AGGAAGCAAATGAGAAACTT+AGG 0.390966 5_4:+60882984 Msa0861530:CDS
TGAAGAAGAAAAGACCAAAT+TGG 0.391100 5_4:+60883954 Msa0861530:CDS
TAGGGAACGTTCAGAATATA+TGG 0.392018 5_4:+60885422 Msa0861530:three_prime_UTR
AGCAAAGGAACAGCTGATTC+AGG 0.394668 5_4:+60882904 Msa0861530:CDS
GGAATGTTGGAAATGACAAT+TGG 0.397432 5_4:+60883709 Msa0861530:CDS
ATTATTGGAAGTTTAAGAAC+AGG 0.402750 5_4:-60881226 None:intergenic
TCTAGTCTTAAAGAGAAATT+GGG 0.406330 5_4:+60883688 Msa0861530:CDS
TAACTCCTCCACCTTCTTGA+TGG 0.411635 5_4:-60884538 None:intergenic
CTGCCGAGTTTACTAACTCT+TGG 0.411846 5_4:-60882139 None:intergenic
GAGAATGGGCATGGAGGAGA+AGG 0.415557 5_4:+60884672 Msa0861530:CDS
GTAGCTTTGTTAGGAGTAGC+TGG 0.429776 5_4:-60882055 None:intergenic
AGCTGGAGATGATGCTTTGT+TGG 0.434960 5_4:-60882038 None:intergenic
AGAGAAAGCGGAGATTCTTT+CGG 0.435111 5_4:+60883291 Msa0861530:CDS
CCGAGCTGTTGAGCTGGAAC+AGG 0.436065 5_4:+60883060 Msa0861530:CDS
CTTCTTTAAGTGCTTCCTGC+AGG 0.437922 5_4:-60884410 None:intergenic
GGGAAATGAAATAAATAGGT+TGG 0.439453 5_4:+60884287 Msa0861530:CDS
TTTCACACTGGCTTCTTCCT+CGG 0.439829 5_4:-60884328 None:intergenic
CGTTCATGGCTTCAAAATCC+AGG 0.446049 5_4:+60881442 Msa0861530:exon
TACTAACTCTTGGAGTAGCC+GGG 0.458193 5_4:-60882129 None:intergenic
GCTGGAGATGATGCTTTGTT+GGG 0.461900 5_4:-60882037 None:intergenic
TGATTCCACTTCCTCTTCAA+AGG 0.461956 5_4:-60884922 None:intergenic
CGGCAGAGGGGTATCTAAAC+CGG 0.463124 5_4:+60882156 Msa0861530:CDS
GAATGTTGGAAATGACAATT+GGG 0.464612 5_4:+60883710 Msa0861530:CDS
GACAGAATATAGAAAATTCA+GGG 0.466803 5_4:+60880754 None:intergenic
CGTAGCTTTCGCGTTCAGCT+TGG 0.467021 5_4:-60884053 None:intergenic
GAGATCTGCGTCATTGTCCT+TGG 0.467421 5_4:+60883603 Msa0861530:CDS
TGTGAGGAACCAGCATGCTT+TGG 0.468644 5_4:+60883138 Msa0861530:CDS
AGCTGAGAGCATGAAGTTGA+AGG 0.471831 5_4:+60884437 Msa0861530:CDS
GAGAGAGAGTGTGGCCACCT+TGG 0.471868 5_4:+60881148 Msa0861530:five_prime_UTR
CGTCGGCATGACTCAGTGCC+TGG 0.471915 5_4:-60883240 None:intergenic
ATTCAACTGTGTCTGCAATT+CGG 0.472666 5_4:-60882858 None:intergenic
AGTAGAAAGTGAAGGAAGGA+AGG 0.472917 5_4:+60881082 Msa0861530:five_prime_UTR
CGATGAAAAGTTGGCAGAGA+AGG 0.474960 5_4:+60883444 Msa0861530:CDS
AGAATCCTTTGAAGAGGAAG+TGG 0.477114 5_4:+60884917 Msa0861530:CDS
ACTGCAACGAAACACCTAGA+AGG 0.483055 5_4:+60883628 Msa0861530:CDS
GAAGAAGAAAACTCGTCGTT+GGG 0.484970 5_4:+60884267 Msa0861530:CDS
CTTTAAGTGCTTCCTGCAGG+TGG 0.485278 5_4:-60884407 None:intergenic
CCAAAACCTGAGAATGTGAA+TGG 0.485446 5_4:+60884777 Msa0861530:CDS
TTACTAACTCTTGGAGTAGC+CGG 0.486128 5_4:-60882130 None:intergenic
TGTGTATCTTCTTCAGGTGG+AGG 0.488353 5_4:-60880797 None:intergenic
TAGAGTTCTCAGAAGAGAAT+GGG 0.491423 5_4:+60884658 Msa0861530:CDS
TCTTAAGCAAGAACTTGAAA+AGG 0.495157 5_4:+60883411 Msa0861530:CDS
TCAGCTGGTGTGGTAGGTCT+CGG 0.496925 5_4:-60882277 None:intergenic
TTTATTAACTGTCTCAATCT+CGG 0.498611 5_4:-60883827 None:intergenic
AAGAAGAAGAAGCCTTTGCT+TGG 0.502628 5_4:+60885035 Msa0861530:CDS
GCGTTGTCTTCTCGCGGCTA+AGG 0.503627 5_4:+60883762 Msa0861530:CDS
GCTAGATGAGTGCAGAATAA+AGG 0.504674 5_4:+60883537 Msa0861530:CDS
TTACTCTAACTTACATCAGC+TGG 0.506928 5_4:-60882292 None:intergenic
ACAGATGGTGGTGAGACAAA+TGG 0.508326 5_4:+60884948 Msa0861530:CDS
GAAGTTCCGAGCTGTTGAGC+TGG 0.508758 5_4:+60883054 Msa0861530:CDS
CTTCCAAACTTGCCAAGCAA+AGG 0.509231 5_4:-60885047 None:intergenic
GCTGTTGAGCTGGAACAGGC+TGG 0.518387 5_4:+60883064 Msa0861530:CDS
AGTGTGGCCACCTTGGAGAC+AGG 0.518779 5_4:+60881155 Msa0861530:five_prime_UTR
AAAGGATTACGATGAAAAGT+TGG 0.519464 5_4:+60883435 Msa0861530:CDS
GTAGAGTTCTCAGAAGAGAA+TGG 0.519533 5_4:+60884657 Msa0861530:CDS
TTTATGTTATCCTAATTCTA+GGG 0.522267 5_4:+60885404 Msa0861530:three_prime_UTR
TGAAGAAGAAAACTCGTCGT+TGG 0.523854 5_4:+60884266 Msa0861530:CDS
GCTTTCGCGTTCAGCTTGGT+TGG 0.525970 5_4:-60884049 None:intergenic
GTGTATCTTCTTCAGGTGGA+GGG 0.528515 5_4:-60880796 None:intergenic
TAGTATTGAAAATTCTAAGA+TGG 0.531285 5_4:+60884176 Msa0861530:CDS
GTGTTTCGTTGCAGTTTCCA+AGG 0.532436 5_4:-60883620 None:intergenic
AATTGAAGCTGCTCAGAAGA+AGG 0.533018 5_4:+60883087 Msa0861530:CDS
CAAAGAAGAAAACATTGTCT+TGG 0.534634 5_4:+60884728 Msa0861530:CDS
AGAAAGTAGAAAGTGAAGGA+AGG 0.537798 5_4:+60881078 Msa0861530:five_prime_UTR
GGCTTTGAATTCAAAGATCG+TGG 0.543368 5_4:-60882235 None:intergenic
GGAAGCAAATGAGAAACTTA+GGG 0.544021 5_4:+60882985 Msa0861530:CDS
CTTACATCAGCTGGTGTGGT+AGG 0.544278 5_4:-60882283 None:intergenic
TTTGATTGAACAGCTTAATG+TGG 0.546992 5_4:+60883471 Msa0861530:CDS
GGTTGAGGAATTAGAAACAA+AGG 0.547465 5_4:+60883558 Msa0861530:CDS
TGCTCTTCTCGCCACCACTC+AGG 0.550863 5_4:+60883168 Msa0861530:CDS
AGCCGAGGTGATCCACCTGC+AGG 0.551762 5_4:+60884395 Msa0861530:CDS
AAACGAGGACCTCCGATCTA+GGG 0.552396 5_4:+60884506 Msa0861530:CDS
TTCTGTTGAATTGAAAATGT+GGG 0.553383 5_4:+60884839 Msa0861530:CDS
TTCTCAGAAGAGAATGGGCA+TGG 0.553671 5_4:+60884663 Msa0861530:CDS
TAGTGTGTATCTTCTTCAGG+TGG 0.554487 5_4:-60880800 None:intergenic
ATTCTGTTGAATTGAAAATG+TGG 0.555044 5_4:+60884838 Msa0861530:CDS
GAAGGAAGAAGATGCGAGGA+AGG 0.556127 5_4:+60884806 Msa0861530:CDS
TCAGATTGAAGATTTAAAGT+CGG 0.558119 5_4:+60884080 Msa0861530:CDS
GAGAGGAAAGCAGAATAAAG+TGG 0.559434 5_4:-60885328 None:intergenic
GCTGAGCTGATACGTTTGAA+GGG 0.559462 5_4:+60883313 Msa0861530:CDS
TAGTGAAAACAATACTGTAT+TGG 0.560108 5_4:+60883366 Msa0861530:CDS
AGCTGCTCAGAAGAAGGAAG+AGG 0.562975 5_4:+60883093 Msa0861530:CDS
AGAAAAGACCAAATTGGCAA+TGG 0.563558 5_4:+60883960 Msa0861530:CDS
GGAGTTTGAAGCTGCTAAGA+TGG 0.566983 5_4:+60883492 Msa0861530:CDS
ACTCTTTGCAACAGCTCTTG+GGG 0.569596 5_4:-60882834 None:intergenic
GGGCTTACTAGATTCAAAGC+TGG 0.570000 5_4:+60883333 Msa0861530:CDS
GCTACTCCAGCATCAACTCT+CGG 0.570490 5_4:+60882073 Msa0861530:CDS
ATGGATATTGTGAACTCCAA+GGG 0.570952 5_4:+60884195 Msa0861530:CDS
GAGTTAGTAAACTCGGCAGA+GGG 0.572194 5_4:+60882143 Msa0861530:CDS
TGAGACAGTTAATAAAGAGA+AGG 0.573086 5_4:+60883834 Msa0861530:CDS
GCAAGAACTTGAAAAGGCAA+AGG 0.573713 5_4:+60883417 Msa0861530:CDS
TGGTCAAATCTATATATAAG+GGG 0.574538 5_4:-60885355 None:intergenic
TTGTGAACTCCAAGGGAGAG+TGG 0.575595 5_4:+60884202 Msa0861530:CDS
CCATGAACGATTATGAAAGA+AGG 0.576654 5_4:-60881428 None:intergenic
TGAGAAACTTAGGGAGGCAA+TGG 0.578916 5_4:+60882994 Msa0861530:CDS
GATGGATATTGTGAACTCCA+AGG 0.579671 5_4:+60884194 Msa0861530:CDS
ACGATTATGAAAGAAGGTAC+AGG 0.579764 5_4:-60881422 None:intergenic
GCAAACTTCACGCCTTTCTG+CGG 0.582741 5_4:+60882201 Msa0861530:CDS
AGAGGAAGAAACTCAACTGA+AGG 0.583288 5_4:+60884353 Msa0861530:CDS
AACTCCAAACAAAACATCCC+CGG 0.586424 5_4:+60882111 Msa0861530:CDS
TCAACTGAAGGAGAATATGA+AGG 0.589116 5_4:+60884365 Msa0861530:CDS
CCTGTTCCAGCTCAACAGCT+CGG 0.591772 5_4:-60883060 None:intergenic
TACTAGAAAGTAGAAAGTGA+AGG 0.591906 5_4:+60881074 Msa0861530:five_prime_UTR
ACCAGAAGAATCCTTTGAAG+AGG 0.592110 5_4:+60884911 Msa0861530:CDS
TGTGAACTCCAAGGGAGAGT+GGG 0.592754 5_4:+60884203 Msa0861530:CDS
CTAACTTACATCAGCTGGTG+TGG 0.593067 5_4:-60882287 None:intergenic
AGAGTTAGTAAACTCGGCAG+AGG 0.593574 5_4:+60882142 Msa0861530:CDS
TGAGTGCAGAATAAAGGTTG+AGG 0.594847 5_4:+60883543 Msa0861530:CDS
TACAACACGAAACACGAATG+AGG 0.595109 5_4:+60884581 Msa0861530:CDS
CAGACACATCCAAAGCATGC+TGG 0.595358 5_4:-60883147 None:intergenic
CGTGAAGTTTGCAAAGGTGA+AGG 0.595493 5_4:-60882190 None:intergenic
GAAACTTAGGGAGGCAATGG+TGG 0.596777 5_4:+60882997 Msa0861530:CDS
AGATTCAAAGCTGGAAATCG+AGG 0.599158 5_4:+60883342 Msa0861530:CDS
CTCAGAAGAAGGAAGAGGAA+TGG 0.599765 5_4:+60883098 Msa0861530:CDS
ATGATGTGCATCATTAAGCA+TGG 0.600860 5_4:-60884133 None:intergenic
AGCTACCATCAAGAAGGTGG+AGG 0.602776 5_4:+60884533 Msa0861530:CDS
GAGGCAAAGAGGAGATCTTG+AGG 0.603943 5_4:+60883732 Msa0861530:CDS
ATGACAATTGGGAGGCAAAG+AGG 0.605047 5_4:+60883721 Msa0861530:CDS
ACTCCAAGAGTTAGTAAACT+CGG 0.607845 5_4:+60882136 Msa0861530:CDS
AGAGAGAGCTTGAAAGTGTG+AGG 0.609297 5_4:+60883122 Msa0861530:CDS
CTGGAGATGATGCTTTGTTG+GGG 0.612070 5_4:-60882036 None:intergenic
ACAGAGAACATTGGTGATGG+TGG 0.612489 5_4:+60884981 Msa0861530:CDS
ATCAGCTACCATCAAGAAGG+TGG 0.613126 5_4:+60884530 Msa0861530:CDS
TATGAAGGAAGTTGAAGCCG+AGG 0.616102 5_4:+60884380 Msa0861530:CDS
AGAAGACCTAAAGAAAGCAA+AGG 0.616162 5_4:+60882889 Msa0861530:CDS
TGGTAGCTGATTCCCTAGAT+CGG 0.616393 5_4:-60884518 None:intergenic
ACTTTGCCGAGAGTTGATGC+TGG 0.616991 5_4:-60882079 None:intergenic
AGAAGCACAAAGATTGTCTG+AGG 0.617743 5_4:+60882964 Msa0861530:CDS
AAAACTTTCAGCTTCAAGCG+TGG 0.619164 5_4:+60883876 Msa0861530:CDS
AGAAGCCAGTGTGAAAAGAG+AGG 0.619361 5_4:+60884335 Msa0861530:CDS
TGGTGGAAGCTCACCAACAA+AGG 0.619554 5_4:+60884998 Msa0861530:CDS
GGAATCAGCTACCATCAAGA+AGG 0.621797 5_4:+60884527 Msa0861530:CDS
GAAGTGGAATCAAAGACAGA+TGG 0.624193 5_4:+60884933 Msa0861530:CDS
GATTCAGGCTGAGAAAGAGA+AGG 0.627619 5_4:+60882919 Msa0861530:CDS
TGAGCTTCATGTAGAGAAAG+CGG 0.632260 5_4:+60883279 Msa0861530:CDS
TATATATAAGGGGACATGAG+AGG 0.632618 5_4:-60885345 None:intergenic
TCGTTGAAGCTCCTGAGTGG+TGG 0.632686 5_4:-60883179 None:intergenic
GTGGAATCAAAGACAGATGG+TGG 0.634087 5_4:+60884936 Msa0861530:CDS
TGATCTTTCTGATAGCGAGA+AGG 0.643086 5_4:+60884611 Msa0861530:CDS
ACTAACTCTTGGAGTAGCCG+GGG 0.646262 5_4:-60882128 None:intergenic
TTCAGAGCGTTGTCTTCTCG+CGG 0.647749 5_4:+60883756 Msa0861530:CDS
GAATGTGAATGGAAAACTGA+AGG 0.653191 5_4:+60884788 Msa0861530:CDS
GAAAGGCGTGAAGTTTGCAA+AGG 0.655727 5_4:-60882196 None:intergenic
AACTGAAGGAAGAAGATGCG+AGG 0.658723 5_4:+60884802 Msa0861530:CDS
AACTCGTTGAAGCTCCTGAG+TGG 0.663561 5_4:-60883182 None:intergenic
ATTCAAAGCCAATTGCTGAG+AGG 0.666551 5_4:+60882248 Msa0861530:CDS
TTCCTGCAGGTGGATCACCT+CGG 0.677019 5_4:-60884397 None:intergenic
GTGACAGAGAACATTGGTGA+TGG 0.683202 5_4:+60884978 Msa0861530:CDS
TCAGAAGAGAATGGGCATGG+AGG 0.685717 5_4:+60884666 Msa0861530:CDS
AGCAAATGAGAAACTTAGGG+AGG 0.687762 5_4:+60882988 Msa0861530:CDS
TAGCTGATTCCCTAGATCGG+AGG 0.695428 5_4:-60884515 None:intergenic
TGTTGGAAATGACAATTGGG+AGG 0.697195 5_4:+60883713 Msa0861530:CDS
AGTTAGTAAACTCGGCAGAG+GGG 0.711321 5_4:+60882144 Msa0861530:CDS
GCATCTGTGACAGAGAACAT+TGG 0.718063 5_4:+60884972 Msa0861530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGAAAAATGTATAAATAA+AGG + chr5_4:60880878-60880897 Msa0861530:intron 10.0%
!! AAGAAAAATGTATAAATAAA+GGG + chr5_4:60880879-60880898 Msa0861530:intron 10.0%
!! TAAATTAATGGAAAAATTAT+TGG - chr5_4:60881244-60881263 None:intergenic 10.0%
!!! TTTTTTTTCTTCTAAATTAA+TGG - chr5_4:60881256-60881275 None:intergenic 10.0%
!!! AAAACAAATTTTTTTAATGT+TGG + chr5_4:60881275-60881294 Msa0861530:five_prime_UTR 10.0%
!! AAAATATTAAACAAGTTTAA+TGG - chr5_4:60882794-60882813 None:intergenic 10.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr5_4:60880880-60880899 Msa0861530:intron 15.0%
!! AAAGTGAAATATATTGTATT+GGG + chr5_4:60880903-60880922 Msa0861530:intron 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + chr5_4:60880943-60880962 Msa0861530:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG + chr5_4:60880944-60880963 Msa0861530:intron 15.0%
!!! ATTTATATTTTTTGTCTATC+TGG + chr5_4:60881535-60881554 Msa0861530:intron 15.0%
!!! TTTATATTTTTTGTCTATCT+GGG + chr5_4:60881536-60881555 Msa0861530:intron 15.0%
!! GAAAAATTAAACATAAAGTT+GGG - chr5_4:60881624-60881643 None:intergenic 15.0%
!! ACAAAAATTTAAACAGATAA+AGG - chr5_4:60881646-60881665 None:intergenic 15.0%
!! AAATTCATCAAGTAAAATAA+GGG - chr5_4:60881833-60881852 None:intergenic 15.0%
!! TAAATTCATCAAGTAAAATA+AGG - chr5_4:60881834-60881853 None:intergenic 15.0%
!!! TTAATATCATGAATTTTGAT+TGG + chr5_4:60882730-60882749 Msa0861530:intron 15.0%
!! GAAAGTGAAATATATTGTAT+TGG + chr5_4:60880902-60880921 Msa0861530:intron 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG + chr5_4:60880976-60880995 Msa0861530:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr5_4:60881013-60881032 Msa0861530:intron 20.0%
!!! TATTGTGAGATTTTGATTAA+TGG + chr5_4:60881563-60881582 Msa0861530:intron 20.0%
!!! ATTGTGAGATTTTGATTAAT+GGG + chr5_4:60881564-60881583 Msa0861530:intron 20.0%
!! GGAAAAATTAAACATAAAGT+TGG - chr5_4:60881625-60881644 None:intergenic 20.0%
!!! TTATCTTTGTTTGTTGAATT+TGG + chr5_4:60881851-60881870 Msa0861530:intron 20.0%
!!! TTTCTTTCCAAATTTGTTTT+TGG + chr5_4:60882386-60882405 Msa0861530:intron 20.0%
!!! TTTGTTTTTCTCTTCTAATA+GGG - chr5_4:60883905-60883924 None:intergenic 20.0%
!! AAACAAACTTATCAATGAAT+TGG + chr5_4:60883918-60883937 Msa0861530:CDS 20.0%
!!! TAGTATTGAAAATTCTAAGA+TGG + chr5_4:60884176-60884195 Msa0861530:CDS 20.0%
!! TTGGTCAAATCTATATATAA+GGG - chr5_4:60885359-60885378 None:intergenic 20.0%
!! TTTGGTCAAATCTATATATA+AGG - chr5_4:60885360-60885379 None:intergenic 20.0%
!!! TTTTATGTTATCCTAATTCT+AGG + chr5_4:60885403-60885422 Msa0861530:three_prime_UTR 20.0%
!! TTTATGTTATCCTAATTCTA+GGG + chr5_4:60885404-60885423 Msa0861530:three_prime_UTR 20.0%
!! TTGAAATGGATCAGTTATTT+TGG + chr5_4:60880990-60881009 Msa0861530:intron 25.0%
!!! TGAAATGGATCAGTTATTTT+GGG + chr5_4:60880991-60881010 Msa0861530:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr5_4:60881012-60881031 Msa0861530:intron 25.0%
!! GAAAACAAACTCAATTTGTT+TGG + chr5_4:60881177-60881196 Msa0861530:five_prime_UTR 25.0%
!!! AAACTCAATTTGTTTGGTTT+TGG + chr5_4:60881183-60881202 Msa0861530:five_prime_UTR 25.0%
! ATTATTGGAAGTTTAAGAAC+AGG - chr5_4:60881229-60881248 None:intergenic 25.0%
!!! AACCTCTTTTGTTTTTACTT+TGG + chr5_4:60881393-60881412 Msa0861530:five_prime_UTR 25.0%
! AACCAAAGTAAAAACAAAAG+AGG - chr5_4:60881398-60881417 None:intergenic 25.0%
!!! TTTTGCTTTAAGATCTGATT+TGG + chr5_4:60881493-60881512 Msa0861530:intron 25.0%
!!! TTTGCTTTAAGATCTGATTT+GGG + chr5_4:60881494-60881513 Msa0861530:intron 25.0%
!!! CAAAATTTGAACTTTAGAGT+CGG + chr5_4:60881711-60881730 Msa0861530:intron 25.0%
!!! AAAATTTGAACTTTAGAGTC+GGG + chr5_4:60881712-60881731 Msa0861530:intron 25.0%
!! TCCATTATCTGATTTGATAA+AGG + chr5_4:60881894-60881913 Msa0861530:intron 25.0%
! ATTTAATGCAATGCTGATAT+TGG + chr5_4:60881969-60881988 Msa0861530:intron 25.0%
!! AGTTGTTTGACAATTTTTCT+TGG + chr5_4:60882516-60882535 Msa0861530:intron 25.0%
! TAGTGAAAACAATACTGTAT+TGG + chr5_4:60883366-60883385 Msa0861530:CDS 25.0%
!!! TTCTAGTCTTAAAGAGAAAT+TGG + chr5_4:60883687-60883706 Msa0861530:CDS 25.0%
!!! TCTAGTCTTAAAGAGAAATT+GGG + chr5_4:60883688-60883707 Msa0861530:CDS 25.0%
! TTTATTAACTGTCTCAATCT+CGG - chr5_4:60883830-60883849 None:intergenic 25.0%
!!! GTTTGTTTTTCTCTTCTAAT+AGG - chr5_4:60883906-60883925 None:intergenic 25.0%
!! TCAGATTGAAGATTTAAAGT+CGG + chr5_4:60884080-60884099 Msa0861530:CDS 25.0%
!!! GAATATTTTTCAAGAAAACG+AGG + chr5_4:60884491-60884510 Msa0861530:CDS 25.0%
! ATTCTGTTGAATTGAAAATG+TGG + chr5_4:60884838-60884857 Msa0861530:CDS 25.0%
! TTCTGTTGAATTGAAAATGT+GGG + chr5_4:60884839-60884858 Msa0861530:CDS 25.0%
!! TTAAAGTGTTTGCATGTATT+TGG + chr5_4:60885147-60885166 Msa0861530:three_prime_UTR 25.0%
!!! TATTGTGATTTTTTGCTTCT+TGG + chr5_4:60885172-60885191 Msa0861530:three_prime_UTR 25.0%
!!! TAGGTTTTTAAAGAATGAAG+AGG + chr5_4:60885197-60885216 Msa0861530:three_prime_UTR 25.0%
! TGGTCAAATCTATATATAAG+GGG - chr5_4:60885358-60885377 None:intergenic 25.0%
TACTAGAAAGTAGAAAGTGA+AGG + chr5_4:60881074-60881093 Msa0861530:five_prime_UTR 30.0%
!!! AGAGAGAGAAACATTGATTT+TGG + chr5_4:60881106-60881125 Msa0861530:five_prime_UTR 30.0%
! ACAAGAAACTGAACAAGTTT+TGG - chr5_4:60881307-60881326 None:intergenic 30.0%
!! ATTAATGGGTTTGATCTGTT+TGG + chr5_4:60881578-60881597 Msa0861530:intron 30.0%
! GTTTTTACTATCTGTGATTC+TGG + chr5_4:60881797-60881816 Msa0861530:intron 30.0%
!! AGTAAAATAAGGGAGCATTA+GGG - chr5_4:60881823-60881842 None:intergenic 30.0%
!! AAGTAAAATAAGGGAGCATT+AGG - chr5_4:60881824-60881843 None:intergenic 30.0%
GCCTTTATCAAATCAGATAA+TGG - chr5_4:60881898-60881917 None:intergenic 30.0%
!!! TCCAAATTTGTTTTTGGAAG+AGG + chr5_4:60882392-60882411 Msa0861530:intron 30.0%
! TACACTTTTCATGAGACAAT+TGG - chr5_4:60882430-60882449 None:intergenic 30.0%
TCTTAAGCAAGAACTTGAAA+AGG + chr5_4:60883411-60883430 Msa0861530:CDS 30.0%
AAAGGATTACGATGAAAAGT+TGG + chr5_4:60883435-60883454 Msa0861530:CDS 30.0%
TTTGATTGAACAGCTTAATG+TGG + chr5_4:60883471-60883490 Msa0861530:CDS 30.0%
TAAAGAGAAATTGGGAATGT+TGG + chr5_4:60883696-60883715 Msa0861530:CDS 30.0%
GAATGTTGGAAATGACAATT+GGG + chr5_4:60883710-60883729 Msa0861530:CDS 30.0%
TGAGACAGTTAATAAAGAGA+AGG + chr5_4:60883834-60883853 Msa0861530:CDS 30.0%
TGAAGAAGAAAAGACCAAAT+TGG + chr5_4:60883954-60883973 Msa0861530:CDS 30.0%
! GTTGGCTAATAGTTTTTCTT+TGG - chr5_4:60884034-60884053 None:intergenic 30.0%
CGTTGGGAAATGAAATAAAT+AGG + chr5_4:60884283-60884302 Msa0861530:CDS 30.0%
GGGAAATGAAATAAATAGGT+TGG + chr5_4:60884287-60884306 Msa0861530:CDS 30.0%
TTCTTTACTGAAAAAAACCG+AGG + chr5_4:60884311-60884330 Msa0861530:CDS 30.0%
CATATTTAAGGAAGAGCTTT+CGG + chr5_4:60884698-60884717 Msa0861530:CDS 30.0%
! CAAGACAATGTTTTCTTCTT+TGG - chr5_4:60884730-60884749 None:intergenic 30.0%
CAAAGAAGAAAACATTGTCT+TGG + chr5_4:60884728-60884747 Msa0861530:CDS 30.0%
!!! GATTTTTTGCTTCTTGGAAT+AGG + chr5_4:60885178-60885197 Msa0861530:three_prime_UTR 30.0%
AGAGGCTTGTAATATTGTTT+AGG + chr5_4:60885215-60885234 Msa0861530:three_prime_UTR 30.0%
TAGATTTGACCAAAAAGAAG+TGG + chr5_4:60885366-60885385 Msa0861530:three_prime_UTR 30.0%
!! TTCAATTTGCCACTTCTTTT+TGG - chr5_4:60885378-60885397 None:intergenic 30.0%
TACTAGTGTGTATCTTCTTC+AGG - chr5_4:60880806-60880825 None:intergenic 35.0%
GCTAAGGGGTCAAATAAATT+GGG - chr5_4:60880843-60880862 None:intergenic 35.0%
AGCTAAGGGGTCAAATAAAT+TGG - chr5_4:60880844-60880863 None:intergenic 35.0%
ATCTGTGTGAAATGAGCTAA+GGG - chr5_4:60880858-60880877 None:intergenic 35.0%
AATCTGTGTGAAATGAGCTA+AGG - chr5_4:60880859-60880878 None:intergenic 35.0%
AGAAAATGGGTCAGTTATTC+CGG + chr5_4:60881026-60881045 Msa0861530:intron 35.0%
AGAAAGTAGAAAGTGAAGGA+AGG + chr5_4:60881078-60881097 Msa0861530:five_prime_UTR 35.0%
!! CTTGTTTCTGACAATGTTGT+TGG + chr5_4:60881322-60881341 Msa0861530:five_prime_UTR 35.0%
! ACGATTATGAAAGAAGGTAC+AGG - chr5_4:60881425-60881444 None:intergenic 35.0%
CCATGAACGATTATGAAAGA+AGG - chr5_4:60881431-60881450 None:intergenic 35.0%
CCTTCTTTCATAATCGTTCA+TGG + chr5_4:60881428-60881447 Msa0861530:exon 35.0%
AGTATGAAACTTGACAAACC+TGG - chr5_4:60881463-60881482 None:intergenic 35.0%
CATTGTGAACTTGATAGATC+TGG + chr5_4:60881998-60882017 Msa0861530:intron 35.0%
ACTCCAAGAGTTAGTAAACT+CGG + chr5_4:60882136-60882155 Msa0861530:CDS 35.0%
TTACTCTAACTTACATCAGC+TGG - chr5_4:60882295-60882314 None:intergenic 35.0%
GCCTCTTCCAAAAACAAATT+TGG - chr5_4:60882396-60882415 None:intergenic 35.0%
! AAACATGGTCACACATTTTC+AGG - chr5_4:60882473-60882492 None:intergenic 35.0%
! AAGACCAACAGTCTAAAACA+TGG - chr5_4:60882488-60882507 None:intergenic 35.0%
!!! TGTTTTAGACTGTTGGTCTT+AGG + chr5_4:60882488-60882507 Msa0861530:intron 35.0%
!! TTCTGAGATGTCCAATATGT+CGG + chr5_4:60882564-60882583 Msa0861530:intron 35.0%
ATATTGTGAAAAGCAGCGTA+AGG + chr5_4:60882697-60882716 Msa0861530:intron 35.0%
!! GCTGTGAAACTATTTTGAAG+CGG + chr5_4:60882758-60882777 Msa0861530:intron 35.0%
ATTCAACTGTGTCTGCAATT+CGG - chr5_4:60882861-60882880 None:intergenic 35.0%
AGAAGACCTAAAGAAAGCAA+AGG + chr5_4:60882889-60882908 Msa0861530:CDS 35.0%
AGGAAGCAAATGAGAAACTT+AGG + chr5_4:60882984-60883003 Msa0861530:CDS 35.0%
GGAAGCAAATGAGAAACTTA+GGG + chr5_4:60882985-60883004 Msa0861530:CDS 35.0%
GGTTGAGGAATTAGAAACAA+AGG + chr5_4:60883558-60883577 Msa0861530:CDS 35.0%
!!! GCAGTTCATTTTTTCCTTCT+AGG - chr5_4:60883645-60883664 None:intergenic 35.0%
GGAATGTTGGAAATGACAAT+TGG + chr5_4:60883709-60883728 Msa0861530:CDS 35.0%
AGAAAAGACCAAATTGGCAA+TGG + chr5_4:60883960-60883979 Msa0861530:CDS 35.0%
TAAGCTATCCATTGCCAATT+TGG - chr5_4:60883971-60883990 None:intergenic 35.0%
ATGATGTGCATCATTAAGCA+TGG - chr5_4:60884136-60884155 None:intergenic 35.0%
ATGGATATTGTGAACTCCAA+GGG + chr5_4:60884195-60884214 Msa0861530:CDS 35.0%
TCAACTGAAGGAGAATATGA+AGG + chr5_4:60884365-60884384 Msa0861530:CDS 35.0%
GAAGTTGAAGGAGAGTTTAT+TGG + chr5_4:60884449-60884468 Msa0861530:CDS 35.0%
TCTGAGAACTCTACTACTTT+AGG - chr5_4:60884651-60884670 None:intergenic 35.0%
TAGAGTTCTCAGAAGAGAAT+GGG + chr5_4:60884658-60884677 Msa0861530:CDS 35.0%
AGGAGAAGGTAGCATATTTA+AGG + chr5_4:60884686-60884705 Msa0861530:CDS 35.0%
! AGTTTTCCATTCACATTCTC+AGG - chr5_4:60884786-60884805 None:intergenic 35.0%
GAATGTGAATGGAAAACTGA+AGG + chr5_4:60884788-60884807 Msa0861530:CDS 35.0%
TTGATCACTTGTTCCTTTGT+TGG - chr5_4:60885014-60885033 None:intergenic 35.0%
! TACCACTCTTTTTCTTCAAC+AGG - chr5_4:60885073-60885092 None:intergenic 35.0%
GCAACGTATTGTTCTATTTG+TGG - chr5_4:60885106-60885125 None:intergenic 35.0%
!!! GAACAATACGTTGCTTTTGA+TGG + chr5_4:60885112-60885131 Msa0861530:exon 35.0%
TATATATAAGGGGACATGAG+AGG - chr5_4:60885348-60885367 None:intergenic 35.0%
TAGGGAACGTTCAGAATATA+TGG + chr5_4:60885422-60885441 Msa0861530:three_prime_UTR 35.0%
TAGTGTGTATCTTCTTCAGG+TGG - chr5_4:60880803-60880822 None:intergenic 40.0%
GTCAAATAAATTGGGACGGA+GGG - chr5_4:60880835-60880854 None:intergenic 40.0%
AGGGGTCAAATAAATTGGGA+CGG - chr5_4:60880839-60880858 None:intergenic 40.0%
TCTGTGTGAAATGAGCTAAG+GGG - chr5_4:60880857-60880876 None:intergenic 40.0%
GAAAATGGGTCAGTTATTCC+GGG + chr5_4:60881027-60881046 Msa0861530:intron 40.0%
AGTAGAAAGTGAAGGAAGGA+AGG + chr5_4:60881082-60881101 Msa0861530:five_prime_UTR 40.0%
!! AGTTTGTTTTCCTGTCTCCA+AGG - chr5_4:60881168-60881187 None:intergenic 40.0%
!!! GATGTTTTGTTTGGAGTTGC+TGG - chr5_4:60882109-60882128 None:intergenic 40.0%
AACTCCAAACAAAACATCCC+CGG + chr5_4:60882111-60882130 Msa0861530:CDS 40.0%
TTACTAACTCTTGGAGTAGC+CGG - chr5_4:60882133-60882152 None:intergenic 40.0%
!! GGCTTTGAATTCAAAGATCG+TGG - chr5_4:60882238-60882257 None:intergenic 40.0%
ATTCAAAGCCAATTGCTGAG+AGG + chr5_4:60882248-60882267 Msa0861530:CDS 40.0%
AACTCGATCTCAGAGAAAGA+AGG - chr5_4:60882332-60882351 None:intergenic 40.0%
!! CTCTGAGATCGAGTTATGTT+TGG + chr5_4:60882337-60882356 Msa0861530:intron 40.0%
!! GTTTGGCTTGATTAGACAGT+TGG + chr5_4:60882354-60882373 Msa0861530:intron 40.0%
!! GTGACCATGTTTTAGACTGT+TGG + chr5_4:60882481-60882500 Msa0861530:intron 40.0%
ACAGTTCACTACCGACATAT+TGG - chr5_4:60882578-60882597 None:intergenic 40.0%
AACTCTTTGCAACAGCTCTT+GGG - chr5_4:60882838-60882857 None:intergenic 40.0%
GCTGTTCCTTTGCTTTCTTT+AGG - chr5_4:60882898-60882917 None:intergenic 40.0%
! AGAAGCACAAAGATTGTCTG+AGG + chr5_4:60882964-60882983 Msa0861530:CDS 40.0%
AGCAAATGAGAAACTTAGGG+AGG + chr5_4:60882988-60883007 Msa0861530:CDS 40.0%
AATTGAAGCTGCTCAGAAGA+AGG + chr5_4:60883087-60883106 Msa0861530:CDS 40.0%
! GACTTTTGATGCAAAGAACC+AGG + chr5_4:60883222-60883241 Msa0861530:CDS 40.0%
!!! AGCAATTTTAGCTGCATCGT+CGG - chr5_4:60883260-60883279 None:intergenic 40.0%
TGAGCTTCATGTAGAGAAAG+CGG + chr5_4:60883279-60883298 Msa0861530:CDS 40.0%
AGAGAAAGCGGAGATTCTTT+CGG + chr5_4:60883291-60883310 Msa0861530:CDS 40.0%
AGATTCAAAGCTGGAAATCG+AGG + chr5_4:60883342-60883361 Msa0861530:CDS 40.0%
GCAAGAACTTGAAAAGGCAA+AGG + chr5_4:60883417-60883436 Msa0861530:CDS 40.0%
GCTAGATGAGTGCAGAATAA+AGG + chr5_4:60883537-60883556 Msa0861530:CDS 40.0%
TGAGTGCAGAATAAAGGTTG+AGG + chr5_4:60883543-60883562 Msa0861530:CDS 40.0%
TGTTGGAAATGACAATTGGG+AGG + chr5_4:60883713-60883732 Msa0861530:CDS 40.0%
AAAACTTTCAGCTTCAAGCG+TGG + chr5_4:60883876-60883895 Msa0861530:CDS 40.0%
GATGGATATTGTGAACTCCA+AGG + chr5_4:60884194-60884213 Msa0861530:CDS 40.0%
TGAAGAAGAAAACTCGTCGT+TGG + chr5_4:60884266-60884285 Msa0861530:CDS 40.0%
GAAGAAGAAAACTCGTCGTT+GGG + chr5_4:60884267-60884286 Msa0861530:CDS 40.0%
! TTCTTCCTCTCTTTTCACAC+TGG - chr5_4:60884343-60884362 None:intergenic 40.0%
AGAGGAAGAAACTCAACTGA+AGG + chr5_4:60884353-60884372 Msa0861530:CDS 40.0%
TACAACACGAAACACGAATG+AGG + chr5_4:60884581-60884600 Msa0861530:CDS 40.0%
CGAAACACGAATGAGGAAAA+TGG + chr5_4:60884588-60884607 Msa0861530:CDS 40.0%
! TGATCTTTCTGATAGCGAGA+AGG + chr5_4:60884611-60884630 Msa0861530:CDS 40.0%
GTAGAGTTCTCAGAAGAGAA+TGG + chr5_4:60884657-60884676 Msa0861530:CDS 40.0%
TAAGGAAGAGCTTTCGGTTT+CGG + chr5_4:60884704-60884723 Msa0861530:CDS 40.0%
! CCATTCACATTCTCAGGTTT+TGG - chr5_4:60884780-60884799 None:intergenic 40.0%
CCAAAACCTGAGAATGTGAA+TGG + chr5_4:60884777-60884796 Msa0861530:CDS 40.0%
! AAAGAGTTTTCGCCAGAGAA+AGG + chr5_4:60884882-60884901 Msa0861530:CDS 40.0%
! ACCAGAAGAATCCTTTGAAG+AGG + chr5_4:60884911-60884930 Msa0861530:CDS 40.0%
TCCTCTTCAAAGGATTCTTC+TGG - chr5_4:60884915-60884934 None:intergenic 40.0%
! AGAATCCTTTGAAGAGGAAG+TGG + chr5_4:60884917-60884936 Msa0861530:CDS 40.0%
TGATTCCACTTCCTCTTCAA+AGG - chr5_4:60884925-60884944 None:intergenic 40.0%
GAAGTGGAATCAAAGACAGA+TGG + chr5_4:60884933-60884952 Msa0861530:CDS 40.0%
AAGAAGAAGAAGCCTTTGCT+TGG + chr5_4:60885035-60885054 Msa0861530:CDS 40.0%
AGCCTGTTGAAGAAAAAGAG+TGG + chr5_4:60885068-60885087 Msa0861530:CDS 40.0%
! AGTTGCACACTTTTGCATGT+TGG + chr5_4:60885263-60885282 Msa0861530:three_prime_UTR 40.0%
GAGAGGAAAGCAGAATAAAG+TGG - chr5_4:60885331-60885350 None:intergenic 40.0%
TCTGAACGTTCCCTAGAATT+AGG - chr5_4:60885417-60885436 None:intergenic 40.0%
GTGTATCTTCTTCAGGTGGA+GGG - chr5_4:60880799-60880818 None:intergenic 45.0%
TGTGTATCTTCTTCAGGTGG+AGG - chr5_4:60880800-60880819 None:intergenic 45.0%
GGTCAAATAAATTGGGACGG+AGG - chr5_4:60880836-60880855 None:intergenic 45.0%
! TTGTTTTCCTGTCTCCAAGG+TGG - chr5_4:60881165-60881184 None:intergenic 45.0%
CGTTCATGGCTTCAAAATCC+AGG + chr5_4:60881442-60881461 Msa0861530:exon 45.0%
! CTGGAGATGATGCTTTGTTG+GGG - chr5_4:60882039-60882058 None:intergenic 45.0%
! GCTGGAGATGATGCTTTGTT+GGG - chr5_4:60882040-60882059 None:intergenic 45.0%
AGCTGGAGATGATGCTTTGT+TGG - chr5_4:60882041-60882060 None:intergenic 45.0%
!! GTAGCTTTGTTAGGAGTAGC+TGG - chr5_4:60882058-60882077 None:intergenic 45.0%
!! GATGCTGGAGTAGCTTTGTT+AGG - chr5_4:60882067-60882086 None:intergenic 45.0%
!!! GTTTTGTTTGGAGTTGCTGG+TGG - chr5_4:60882106-60882125 None:intergenic 45.0%
TACTAACTCTTGGAGTAGCC+GGG - chr5_4:60882132-60882151 None:intergenic 45.0%
CTGCCGAGTTTACTAACTCT+TGG - chr5_4:60882142-60882161 None:intergenic 45.0%
AGAGTTAGTAAACTCGGCAG+AGG + chr5_4:60882142-60882161 Msa0861530:CDS 45.0%
GAGTTAGTAAACTCGGCAGA+GGG + chr5_4:60882143-60882162 Msa0861530:CDS 45.0%
AGTTAGTAAACTCGGCAGAG+GGG + chr5_4:60882144-60882163 Msa0861530:CDS 45.0%
CGTGAAGTTTGCAAAGGTGA+AGG - chr5_4:60882193-60882212 None:intergenic 45.0%
! GAAAGGCGTGAAGTTTGCAA+AGG - chr5_4:60882199-60882218 None:intergenic 45.0%
CTAACTTACATCAGCTGGTG+TGG - chr5_4:60882290-60882309 None:intergenic 45.0%
!! GCTGCAGTCATGCTTTTTGT+TGG + chr5_4:60882649-60882668 Msa0861530:intron 45.0%
ACTCTTTGCAACAGCTCTTG+GGG - chr5_4:60882837-60882856 None:intergenic 45.0%
GAACTCTTTGCAACAGCTCT+TGG - chr5_4:60882839-60882858 None:intergenic 45.0%
! AGCAAAGGAACAGCTGATTC+AGG + chr5_4:60882904-60882923 Msa0861530:CDS 45.0%
GATTCAGGCTGAGAAAGAGA+AGG + chr5_4:60882919-60882938 Msa0861530:CDS 45.0%
TGAGAAACTTAGGGAGGCAA+TGG + chr5_4:60882994-60883013 Msa0861530:CDS 45.0%
CTCAGAAGAAGGAAGAGGAA+TGG + chr5_4:60883098-60883117 Msa0861530:CDS 45.0%
! AGAGAGAGCTTGAAAGTGTG+AGG + chr5_4:60883122-60883141 Msa0861530:CDS 45.0%
GCTGAGCTGATACGTTTGAA+GGG + chr5_4:60883313-60883332 Msa0861530:CDS 45.0%
GGGCTTACTAGATTCAAAGC+TGG + chr5_4:60883333-60883352 Msa0861530:CDS 45.0%
CGATGAAAAGTTGGCAGAGA+AGG + chr5_4:60883444-60883463 Msa0861530:CDS 45.0%
! GGAGTTTGAAGCTGCTAAGA+TGG + chr5_4:60883492-60883511 Msa0861530:CDS 45.0%
GTGTTTCGTTGCAGTTTCCA+AGG - chr5_4:60883623-60883642 None:intergenic 45.0%
ACTGCAACGAAACACCTAGA+AGG + chr5_4:60883628-60883647 Msa0861530:CDS 45.0%
ATGACAATTGGGAGGCAAAG+AGG + chr5_4:60883721-60883740 Msa0861530:CDS 45.0%
!! TTTCACACTGGCTTCTTCCT+CGG - chr5_4:60884331-60884350 None:intergenic 45.0%
AGAAGCCAGTGTGAAAAGAG+AGG + chr5_4:60884335-60884354 Msa0861530:CDS 45.0%
TATGAAGGAAGTTGAAGCCG+AGG + chr5_4:60884380-60884399 Msa0861530:CDS 45.0%
CTTCTTTAAGTGCTTCCTGC+AGG - chr5_4:60884413-60884432 None:intergenic 45.0%
! AGCTGAGAGCATGAAGTTGA+AGG + chr5_4:60884437-60884456 Msa0861530:CDS 45.0%
! TGGTAGCTGATTCCCTAGAT+CGG - chr5_4:60884521-60884540 None:intergenic 45.0%
GGAATCAGCTACCATCAAGA+AGG + chr5_4:60884527-60884546 Msa0861530:CDS 45.0%
ATCAGCTACCATCAAGAAGG+TGG + chr5_4:60884530-60884549 Msa0861530:CDS 45.0%
TAACTCCTCCACCTTCTTGA+TGG - chr5_4:60884541-60884560 None:intergenic 45.0%
TTCTCAGAAGAGAATGGGCA+TGG + chr5_4:60884663-60884682 Msa0861530:CDS 45.0%
AACTGAAGGAAGAAGATGCG+AGG + chr5_4:60884802-60884821 Msa0861530:CDS 45.0%
GTGGAATCAAAGACAGATGG+TGG + chr5_4:60884936-60884955 Msa0861530:CDS 45.0%
! ACAGATGGTGGTGAGACAAA+TGG + chr5_4:60884948-60884967 Msa0861530:CDS 45.0%
GCATCTGTGACAGAGAACAT+TGG + chr5_4:60884972-60884991 Msa0861530:CDS 45.0%
GTGACAGAGAACATTGGTGA+TGG + chr5_4:60884978-60884997 Msa0861530:CDS 45.0%
!! ACAGAGAACATTGGTGATGG+TGG + chr5_4:60884981-60885000 Msa0861530:CDS 45.0%
AAGCCTTTGCTTGGCAAGTT+TGG + chr5_4:60885044-60885063 Msa0861530:CDS 45.0%
CTTCCAAACTTGCCAAGCAA+AGG - chr5_4:60885050-60885069 None:intergenic 45.0%
ATGGGTCAGTTATTCCGGGA+CGG + chr5_4:60881031-60881050 Msa0861530:intron 50.0%
AGAGAGAGAGAGAGAGAGTG+TGG + chr5_4:60881139-60881158 Msa0861530:five_prime_UTR 50.0%
GCTACTCCAGCATCAACTCT+CGG + chr5_4:60882073-60882092 Msa0861530:CDS 50.0%
!! ACTTTGCCGAGAGTTGATGC+TGG - chr5_4:60882082-60882101 None:intergenic 50.0%
!! GTAGCCGGGGATGTTTTGTT+TGG - chr5_4:60882118-60882137 None:intergenic 50.0%
ACTAACTCTTGGAGTAGCCG+GGG - chr5_4:60882131-60882150 None:intergenic 50.0%
GCAAACTTCACGCCTTTCTG+CGG + chr5_4:60882201-60882220 Msa0861530:CDS 50.0%
!!! GCGATGCTTTTTCCGCAGAA+AGG - chr5_4:60882216-60882235 None:intergenic 50.0%
GGCGATTTCCTCTCAGCAAT+TGG - chr5_4:60882259-60882278 None:intergenic 50.0%
CTTACATCAGCTGGTGTGGT+AGG - chr5_4:60882286-60882305 None:intergenic 50.0%
GAAACTTAGGGAGGCAATGG+TGG + chr5_4:60882997-60883016 Msa0861530:CDS 50.0%
AGCTGCTCAGAAGAAGGAAG+AGG + chr5_4:60883093-60883112 Msa0861530:CDS 50.0%
TGTGAGGAACCAGCATGCTT+TGG + chr5_4:60883138-60883157 Msa0861530:CDS 50.0%
CAGACACATCCAAAGCATGC+TGG - chr5_4:60883150-60883169 None:intergenic 50.0%
AACTCGTTGAAGCTCCTGAG+TGG - chr5_4:60883185-60883204 None:intergenic 50.0%
GGCTGAGCTGATACGTTTGA+AGG + chr5_4:60883312-60883331 Msa0861530:CDS 50.0%
GAGATCTGCGTCATTGTCCT+TGG + chr5_4:60883603-60883622 Msa0861530:CDS 50.0%
GAGGCAAAGAGGAGATCTTG+AGG + chr5_4:60883732-60883751 Msa0861530:CDS 50.0%
!! TTCAGAGCGTTGTCTTCTCG+CGG + chr5_4:60883756-60883775 Msa0861530:CDS 50.0%
TTGTGAACTCCAAGGGAGAG+TGG + chr5_4:60884202-60884221 Msa0861530:CDS 50.0%
TGTGAACTCCAAGGGAGAGT+GGG + chr5_4:60884203-60884222 Msa0861530:CDS 50.0%
CTTTAAGTGCTTCCTGCAGG+TGG - chr5_4:60884410-60884429 None:intergenic 50.0%
AAAACGAGGACCTCCGATCT+AGG + chr5_4:60884505-60884524 Msa0861530:CDS 50.0%
AAACGAGGACCTCCGATCTA+GGG + chr5_4:60884506-60884525 Msa0861530:CDS 50.0%
! TAGCTGATTCCCTAGATCGG+AGG - chr5_4:60884518-60884537 None:intergenic 50.0%
AGCTACCATCAAGAAGGTGG+AGG + chr5_4:60884533-60884552 Msa0861530:CDS 50.0%
TCAGAAGAGAATGGGCATGG+AGG + chr5_4:60884666-60884685 Msa0861530:CDS 50.0%
GAAGGAAGAAGATGCGAGGA+AGG + chr5_4:60884806-60884825 Msa0861530:CDS 50.0%
! GTTTTCGCCAGAGAAAGGAG+CGG + chr5_4:60884887-60884906 Msa0861530:CDS 50.0%
TGGTGGAAGCTCACCAACAA+AGG + chr5_4:60884998-60885017 Msa0861530:CDS 50.0%
GTCAGTTATTCCGGGACGGA+GGG + chr5_4:60881035-60881054 Msa0861530:intron 55.0%
GTTACTTACTCCCTCCGTCC+CGG - chr5_4:60881048-60881067 None:intergenic 55.0%
!! CGGCAGAGGGGTATCTAAAC+CGG + chr5_4:60882156-60882175 Msa0861530:CDS 55.0%
GGTGAAGGCGACTCAGATTC+CGG - chr5_4:60882178-60882197 None:intergenic 55.0%
TCAGCTGGTGTGGTAGGTCT+CGG - chr5_4:60882280-60882299 None:intergenic 55.0%
GAAGTTCCGAGCTGTTGAGC+TGG + chr5_4:60883054-60883073 Msa0861530:CDS 55.0%
CCTGTTCCAGCTCAACAGCT+CGG - chr5_4:60883063-60883082 None:intergenic 55.0%
TCGTTGAAGCTCCTGAGTGG+TGG - chr5_4:60883182-60883201 None:intergenic 55.0%
GCTTTCGCGTTCAGCTTGGT+TGG - chr5_4:60884052-60884071 None:intergenic 55.0%
CGTAGCTTTCGCGTTCAGCT+TGG - chr5_4:60884056-60884075 None:intergenic 55.0%
TTTCTGCTCCCACTCTCCCT+TGG - chr5_4:60884214-60884233 None:intergenic 55.0%
TTCCTGCAGGTGGATCACCT+CGG - chr5_4:60884400-60884419 None:intergenic 55.0%
GAGAATGGGCATGGAGGAGA+AGG + chr5_4:60884672-60884691 Msa0861530:CDS 55.0%
! TCTGGTTCCGCTCCTTTCTC+TGG - chr5_4:60884897-60884916 None:intergenic 55.0%
GGTCAGTTATTCCGGGACGG+AGG + chr5_4:60881034-60881053 Msa0861530:intron 60.0%
! GAGAGAGAGTGTGGCCACCT+TGG + chr5_4:60881148-60881167 Msa0861530:five_prime_UTR 60.0%
AGTGTGGCCACCTTGGAGAC+AGG + chr5_4:60881155-60881174 Msa0861530:five_prime_UTR 60.0%
CCGAGCTGTTGAGCTGGAAC+AGG + chr5_4:60883060-60883079 Msa0861530:CDS 60.0%
GCTGTTGAGCTGGAACAGGC+TGG + chr5_4:60883064-60883083 Msa0861530:CDS 60.0%
TGCTCTTCTCGCCACCACTC+AGG + chr5_4:60883168-60883187 Msa0861530:CDS 60.0%
GCGTTGTCTTCTCGCGGCTA+AGG + chr5_4:60883762-60883781 Msa0861530:CDS 60.0%
CGTCGGCATGACTCAGTGCC+TGG - chr5_4:60883243-60883262 None:intergenic 65.0%
AGCCGAGGTGATCCACCTGC+AGG + chr5_4:60884395-60884414 Msa0861530:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 60880764 60885450 60880764 ID=Msa0861530;Name=Msa0861530
chr5_4 mRNA 60880764 60885450 60880764 ID=Msa0861530-mRNA-1;Parent=Msa0861530;Name=Msa0861530-mRNA-1;_AED=0.00;_eAED=0.00;_QI=450|1|1|1|0.66|0.5|4|338|862
chr5_4 exon 60880764 60880822 60880764 ID=Msa0861530-mRNA-1:exon:18752;Parent=Msa0861530-mRNA-1
chr5_4 exon 60881056 60881463 60881056 ID=Msa0861530-mRNA-1:exon:18753;Parent=Msa0861530-mRNA-1
chr5_4 exon 60882015 60882300 60882015 ID=Msa0861530-mRNA-1:exon:18754;Parent=Msa0861530-mRNA-1
chr5_4 exon 60882827 60885450 60882827 ID=Msa0861530-mRNA-1:exon:18755;Parent=Msa0861530-mRNA-1
chr5_4 five_prime_UTR 60880764 60880822 60880764 ID=Msa0861530-mRNA-1:five_prime_utr;Parent=Msa0861530-mRNA-1
chr5_4 five_prime_UTR 60881056 60881446 60881056 ID=Msa0861530-mRNA-1:five_prime_utr;Parent=Msa0861530-mRNA-1
chr5_4 CDS 60881447 60881463 60881447 ID=Msa0861530-mRNA-1:cds;Parent=Msa0861530-mRNA-1
chr5_4 CDS 60882015 60882300 60882015 ID=Msa0861530-mRNA-1:cds;Parent=Msa0861530-mRNA-1
chr5_4 CDS 60882827 60885112 60882827 ID=Msa0861530-mRNA-1:cds;Parent=Msa0861530-mRNA-1
chr5_4 three_prime_UTR 60885113 60885450 60885113 ID=Msa0861530-mRNA-1:three_prime_utr;Parent=Msa0861530-mRNA-1
Gene Sequence

>Msa0861530

ATGGCTTCAAAATCCAGATCTGGTTTATCTGAAACACTCCCCAACAAAGCATCATCTCCAGCTACTCCTAACAAAGCTACTCCAGCATCAACTCTCGGCAAAGTACCACCAGCAACTCCAAACAAAACATCCCCGGCTACTCCAAGAGTTAGTAAACTCGGCAGAGGGGTATCTAAACCGGAATCTGAGTCGCCTTCACCTTTGCAAACTTCACGCCTTTCTGCGGAAAAAGCATCGCCACGATCTTTGAATTCAAAGCCAATTGCTGAGAGGAAATCGCCGAGACCTACCACACCAGCTGATAAGCATACCCCAAGAGCTGTTGCAAAGAGTTCCGAATTGCAGACACAGTTGAATGTCGCTCAAGAAGACCTAAAGAAAGCAAAGGAACAGCTGATTCAGGCTGAGAAAGAGAAGGAAAAAGCAATAAATGAGCTGAAAGAAGCACAAAGATTGTCTGAGGAAGCAAATGAGAAACTTAGGGAGGCAATGGTGGCTCAAAAGCGTGCTGAAGATGATTCTGAGATTGAGAAGTTCCGAGCTGTTGAGCTGGAACAGGCTGGAATTGAAGCTGCTCAGAAGAAGGAAGAGGAATGGCAGAGAGAGCTTGAAAGTGTGAGGAACCAGCATGCTTTGGATGTGTCTGCTCTTCTCGCCACCACTCAGGAGCTTCAACGAGTTAAGCAAGAACTTGTAATGACTTTTGATGCAAAGAACCAGGCACTGAGTCATGCCGACGATGCAGCTAAAATTGCTGAGCTTCATGTAGAGAAAGCGGAGATTCTTTCGGCTGAGCTGATACGTTTGAAGGGCTTACTAGATTCAAAGCTGGAAATCGAGGCTAGTGAAAACAATACTGTATTGGAGCTGCAAAAAGAGATTGAAGCTCTTAAGCAAGAACTTGAAAAGGCAAAGGATTACGATGAAAAGTTGGCAGAGAAGGAGAATTTGATTGAACAGCTTAATGTGGAGTTTGAAGCTGCTAAGATGGCTGAATCTTATGCGCGTAGTGTGCTAGATGAGTGCAGAATAAAGGTTGAGGAATTAGAAACAAAGGTTGAAGAAGCAAATCAGTTAGAGAGATCTGCGTCATTGTCCTTGGAAACTGCAACGAAACACCTAGAAGGAAAAAATGAACTGCTGCATGATGCAGAATCTGAAATTTCTAGTCTTAAAGAGAAATTGGGAATGTTGGAAATGACAATTGGGAGGCAAAGAGGAGATCTTGAGGATTCAGAGCGTTGTCTTCTCGCGGCTAAGGAAGAAAATATTGAAATGTCGAAGAAGATTGAATCTCTTGAGTCCGAGATTGAGACAGTTAATAAAGAGAAGGCTCAAGCTTTGAACAATGAAAAACTTTCAGCTTCAAGCGTGGAAACCCTATTAGAAGAGAAAAACAAACTTATCAATGAATTGGAGATTTGTAGAGATGAAGAAGAAAAGACCAAATTGGCAATGGATAGCTTAGCTTCTGCGTTACATGAAGTATCTGCAGAAGCTAGAGATACCAAAGAAAAACTATTAGCCAACCAAGCTGAACGCGAAAGCTACGTGACTCAGATTGAAGATTTAAAGTCGGATTTAGAAGCTAGCAAAGAAAAATATGAGTCCATGCTTAATGATGCACATCATGAGATTGATGTTCTTACATCTAGTATTGAAAATTCTAAGATGGATATTGTGAACTCCAAGGGAGAGTGGGAGCAGAAAGAACATGATCTTGTCGAGTGCATAAAGAGAACTGAAGAAGAAAACTCGTCGTTGGGAAATGAAATAAATAGGTTGGTTTCTTTACTGAAAAAAACCGAGGAAGAAGCCAGTGTGAAAAGAGAGGAAGAAACTCAACTGAAGGAGAATATGAAGGAAGTTGAAGCCGAGGTGATCCACCTGCAGGAAGCACTTAAAGAAGCACAAGCTGAGAGCATGAAGTTGAAGGAGAGTTTATTGGATAAAGAAAACGAGTTTCAGAATATTTTTCAAGAAAACGAGGACCTCCGATCTAGGGAATCAGCTACCATCAAGAAGGTGGAGGAGTTATCTAAGTCGCTCGAAGAAGCTACAACACGAAACACGAATGAGGAAAATGGTGATCTTTCTGATAGCGAGAAGGACTACGATTTGCTTCCTAAAGTAGTAGAGTTCTCAGAAGAGAATGGGCATGGAGGAGAAGGTAGCATATTTAAGGAAGAGCTTTCGGTTTCGGCCAAAGAAGAAAACATTGTCTTGGATGACAAGTTTGAAAAAACAGAATCTCCAAAACCTGAGAATGTGAATGGAAAACTGAAGGAAGAAGATGCGAGGAAGGAGAAAGATGATTCTGTTGAATTGAAAATGTGGGAGAGCTGCAAGATAGAGAAAAAAGAGTTTTCGCCAGAGAAAGGAGCGGAACCAGAAGAATCCTTTGAAGAGGAAGTGGAATCAAAGACAGATGGTGGTGAGACAAATGGAGCATCTGTGACAGAGAACATTGGTGATGGTGGAAGCTCACCAACAAAGGAACAAGTGATCAAGAAGAAGAAGAAGCCTTTGCTTGGCAAGTTTGGAAGCCTGTTGAAGAAAAAGAGTGGTAGCAATAGCAACCACAAATAG

Protein sequence

>Msa0861530

MASKSRSGLSETLPNKASSPATPNKATPASTLGKVPPATPNKTSPATPRVSKLGRGVSKPESESPSPLQTSRLSAEKASPRSLNSKPIAERKSPRPTTPADKHTPRAVAKSSELQTQLNVAQEDLKKAKEQLIQAEKEKEKAINELKEAQRLSEEANEKLREAMVAQKRAEDDSEIEKFRAVELEQAGIEAAQKKEEEWQRELESVRNQHALDVSALLATTQELQRVKQELVMTFDAKNQALSHADDAAKIAELHVEKAEILSAELIRLKGLLDSKLEIEASENNTVLELQKEIEALKQELEKAKDYDEKLAEKENLIEQLNVEFEAAKMAESYARSVLDECRIKVEELETKVEEANQLERSASLSLETATKHLEGKNELLHDAESEISSLKEKLGMLEMTIGRQRGDLEDSERCLLAAKEENIEMSKKIESLESEIETVNKEKAQALNNEKLSASSVETLLEEKNKLINELEICRDEEEKTKLAMDSLASALHEVSAEARDTKEKLLANQAERESYVTQIEDLKSDLEASKEKYESMLNDAHHEIDVLTSSIENSKMDIVNSKGEWEQKEHDLVECIKRTEEENSSLGNEINRLVSLLKKTEEEASVKREEETQLKENMKEVEAEVIHLQEALKEAQAESMKLKESLLDKENEFQNIFQENEDLRSRESATIKKVEELSKSLEEATTRNTNEENGDLSDSEKDYDLLPKVVEFSEENGHGGEGSIFKEELSVSAKEENIVLDDKFEKTESPKPENVNGKLKEEDARKEKDDSVELKMWESCKIEKKEFSPEKGAEPEESFEEEVESKTDGGETNGASVTENIGDGGSSPTKEQVIKKKKKPLLGKFGSLLKKKSGSNSNHK*