Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0986280 | QBF58815.1 | 91.892 | 37 | 3 | 0 | 69 | 105 | 127 | 163 | 3.94e-13 | 74.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0986280 | A0A411P341 | 91.892 | 37 | 3 | 0 | 69 | 105 | 127 | 163 | 1.88e-13 | 74.7 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0986280 | Msa1226990 | 0.835594 | 1.532293e-56 | -8.615850e-47 |
| Msa0313960 | Msa0986280 | 0.871212 | 8.115009e-67 | -8.615850e-47 |
| Msa0534230 | Msa0986280 | 0.839499 | 1.527993e-57 | -8.615850e-47 |
| Msa0923480 | Msa0986280 | 0.831028 | 2.105554e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0986280 | MtrunA17_Chr3g0121001 | 91.892 | 37 | 3 | 0 | 69 | 105 | 127 | 163 | 3.81e-17 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 29 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTGGAAAACAAGTGTATT+TGG | 0.188508 | 6_4:+34286649 | Msa0986280:CDS |
| ATTGCCAATGGATCAAAATA+AGG | 0.339432 | 6_4:-34290209 | None:intergenic |
| ACAATCTCTGATACTTCAAT+AGG | 0.347637 | 6_4:-34290257 | None:intergenic |
| TGTGGAAAACAAGTGTATTT+GGG | 0.366345 | 6_4:+34286650 | Msa0986280:CDS |
| TAGAGTTGTTGATGAAGGTT+AGG | 0.394990 | 6_4:+34288095 | Msa0986280:CDS |
| AACTTGGTATATATCAGATA+TGG | 0.395439 | 6_4:+34290327 | Msa0986280:CDS |
| GTGTAACTTATATTTGTAGT+AGG | 0.409755 | 6_4:-34290393 | None:intergenic |
| CAATCTCTGATACTTCAATA+GGG | 0.455333 | 6_4:-34290256 | None:intergenic |
| ATGATCTTGGTGGCCGTCCT+AGG | 0.459779 | 6_4:+34289153 | Msa0986280:CDS |
| GATTGTGGAATTTGATATGA+AGG | 0.479491 | 6_4:+34290274 | Msa0986280:CDS |
| GCTTATAGAGTTGTTGATGA+AGG | 0.484797 | 6_4:+34288090 | Msa0986280:CDS |
| GACAGAAGGGAAGATGATCT+TGG | 0.506460 | 6_4:+34289140 | Msa0986280:CDS |
| GTTGATGAAGGTTAGGAATG+AGG | 0.513138 | 6_4:+34288102 | Msa0986280:CDS |
| CCGTCCTAGGAGCATTGTGC+AGG | 0.514421 | 6_4:+34289166 | Msa0986280:CDS |
| GAAGGGTGTGTGGACATCAT+TGG | 0.524351 | 6_4:+34290292 | Msa0986280:CDS |
| CCTGGTTTAGTAATTGCCAA+TGG | 0.526685 | 6_4:-34290221 | None:intergenic |
| TCAACCTGCACAATGCTCCT+AGG | 0.532591 | 6_4:-34289170 | None:intergenic |
| ATAGGGTATTTAACTTCACC+TGG | 0.535676 | 6_4:-34290239 | None:intergenic |
| TATTTGTGATGCAGGGATTG+TGG | 0.548512 | 6_4:+34286632 | Msa0986280:intron |
| TATTGAAGTATCAGAGATTG+TGG | 0.554195 | 6_4:+34290259 | Msa0986280:CDS |
| CAAATATAAGTTACACCTCA+AGG | 0.557193 | 6_4:+34290400 | Msa0986280:three_prime_UTR |
| CCATTGGCAATTACTAAACC+AGG | 0.557917 | 6_4:+34290221 | Msa0986280:CDS |
| ATGAAATATAAGTTACCTTG+AGG | 0.567701 | 6_4:-34290415 | None:intergenic |
| ATTGGTTGAGATCTGACAGA+AGG | 0.589843 | 6_4:+34289126 | Msa0986280:CDS |
| TTGGTTGAGATCTGACAGAA+GGG | 0.602460 | 6_4:+34289127 | Msa0986280:CDS |
| CCTGCACAATGCTCCTAGGA+CGG | 0.659595 | 6_4:-34289166 | None:intergenic |
| ATTGTGGAATTTGATATGAA+GGG | 0.667822 | 6_4:+34290275 | Msa0986280:CDS |
| AGAAGGGAAGATGATCTTGG+TGG | 0.671197 | 6_4:+34289143 | Msa0986280:CDS |
| AATTTGATATGAAGGGTGTG+TGG | 0.685210 | 6_4:+34290282 | Msa0986280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGTTTTGTTATTAAAAT+TGG | + | chr6_4:34286734-34286753 | Msa0986280:intron | 10.0% |
| !!! | TAATAGTATTTTTCTTTAAA+CGG | + | chr6_4:34290481-34290500 | Msa0986280:three_prime_UTR | 10.0% |
| !!! | TATATGAATGTATGTTTTAA+AGG | + | chr6_4:34287281-34287300 | Msa0986280:intron | 15.0% |
| !!! | CTATTTTTTATCAGAAATTT+TGG | - | chr6_4:34287463-34287482 | None:intergenic | 15.0% |
| !! | TTTGAAGAAATTATTAAAGA+TGG | - | chr6_4:34287538-34287557 | None:intergenic | 15.0% |
| !! | ATAATTAAAGCAAGAAAAAT+GGG | - | chr6_4:34288006-34288025 | None:intergenic | 15.0% |
| !! | TATAATTAAAGCAAGAAAAA+TGG | - | chr6_4:34288007-34288026 | None:intergenic | 15.0% |
| !!! | ATTTTAGTTCCTATTTTTTT+TGG | + | chr6_4:34288258-34288277 | Msa0986280:intron | 15.0% |
| !! | TAAGATCTAATATTCAAATA+TGG | + | chr6_4:34288450-34288469 | Msa0986280:intron | 15.0% |
| !!! | TAATGTCTCATTTTTTAAAA+TGG | + | chr6_4:34289003-34289022 | Msa0986280:intron | 15.0% |
| !! | TTTGATTAAATGTTAAATTC+TGG | + | chr6_4:34289292-34289311 | Msa0986280:intron | 15.0% |
| !! | TCAAAATATTTGAGTAAAAA+TGG | + | chr6_4:34289548-34289567 | Msa0986280:intron | 15.0% |
| !! | AAGAAAAATACTATTATGAT+TGG | - | chr6_4:34290477-34290496 | None:intergenic | 15.0% |
| !! | AAAAAAAAATAAACCTGAAG+AGG | - | chr6_4:34286410-34286429 | None:intergenic | 20.0% |
| !!! | TTGATGTTGAATTATTTTCT+GGG | + | chr6_4:34286449-34286468 | Msa0986280:intron | 20.0% |
| !!! | TGATGTTTTTGTTATTGAAT+TGG | + | chr6_4:34286771-34286790 | Msa0986280:intron | 20.0% |
| !! | TGTTAAGATTATGATGTTAA+TGG | + | chr6_4:34287010-34287029 | Msa0986280:intron | 20.0% |
| !! | ATCAAATTCAAAGAAAGTTA+GGG | - | chr6_4:34287055-34287074 | None:intergenic | 20.0% |
| !! | AATCAAATTCAAAGAAAGTT+AGG | - | chr6_4:34287056-34287075 | None:intergenic | 20.0% |
| !! | TAATTAAAGCAAGAAAAATG+GGG | - | chr6_4:34288005-34288024 | None:intergenic | 20.0% |
| !!! | TGTTTTTCTCTAATATTACT+TGG | + | chr6_4:34288064-34288083 | Msa0986280:intron | 20.0% |
| !!! | TATAGCTTTTTCTCTTAATT+TGG | + | chr6_4:34288752-34288771 | Msa0986280:intron | 20.0% |
| !! | TAGTGATTTCATGATATATA+AGG | + | chr6_4:34288912-34288931 | Msa0986280:intron | 20.0% |
| !!! | ATATAAGGTTTTGATGTTTA+TGG | + | chr6_4:34288927-34288946 | Msa0986280:intron | 20.0% |
| !! | ATATGTAAGTAATTACTTGA+TGG | - | chr6_4:34289233-34289252 | None:intergenic | 20.0% |
| !!! | TGAGTTTTGAATTTTCAAAA+TGG | + | chr6_4:34289752-34289771 | Msa0986280:intron | 20.0% |
| !!! | GAGTTTTGAATTTTCAAAAT+GGG | + | chr6_4:34289753-34289772 | Msa0986280:intron | 20.0% |
| !!! | AGTTTTGAATTTTCAAAATG+GGG | + | chr6_4:34289754-34289773 | Msa0986280:intron | 20.0% |
| !!! | TTTGTTCAATGTTTGAAATT+TGG | + | chr6_4:34289885-34289904 | Msa0986280:intron | 20.0% |
| !!! | TCTTTGTTACTTCTAAATTA+TGG | + | chr6_4:34290014-34290033 | Msa0986280:intron | 20.0% |
| !!! | CTTTGTTACTTCTAAATTAT+GGG | + | chr6_4:34290015-34290034 | Msa0986280:intron | 20.0% |
| !!! | TCTTTTATATATGTTGTTAC+AGG | - | chr6_4:34290358-34290377 | None:intergenic | 20.0% |
| !! | CTTGATGTTGAATTATTTTC+TGG | + | chr6_4:34286448-34286467 | Msa0986280:intron | 25.0% |
| ! | TGTTCATCACAACAAATATT+AGG | + | chr6_4:34286539-34286558 | Msa0986280:intron | 25.0% |
| !! | TAGGTTTGAAATAGAAATCT+TGG | + | chr6_4:34286558-34286577 | Msa0986280:intron | 25.0% |
| !! | AGGTTTGAAATAGAAATCTT+GGG | + | chr6_4:34286559-34286578 | Msa0986280:intron | 25.0% |
| ! | TATAAGATCAGTTACATATG+TGG | + | chr6_4:34286691-34286710 | Msa0986280:intron | 25.0% |
| !!! | ATTTGAGCATTCATTTTAAC+AGG | - | chr6_4:34286852-34286871 | None:intergenic | 25.0% |
| ! | TAAATTTCTAACTGGATCTA+AGG | - | chr6_4:34286926-34286945 | None:intergenic | 25.0% |
| !! | AGATTATGATGTTAATGGAT+TGG | + | chr6_4:34287015-34287034 | Msa0986280:intron | 25.0% |
| !!! | TTTTGAGTTGTTTGTTTTAG+AGG | + | chr6_4:34287319-34287338 | Msa0986280:intron | 25.0% |
| !! | TAAAGAAGGAAGTATATACA+TGG | - | chr6_4:34287436-34287455 | None:intergenic | 25.0% |
| ! | ATTAAAAAACATGAAACCTG+AGG | - | chr6_4:34287486-34287505 | None:intergenic | 25.0% |
| !!! | TCAGGTTTCATGTTTTTTAA+TGG | + | chr6_4:34287485-34287504 | Msa0986280:intron | 25.0% |
| !!! | TTTCATGTTTTTTAATGGCT+TGG | + | chr6_4:34287490-34287509 | Msa0986280:intron | 25.0% |
| !!! | AATATTTTGGATAACGAAGA+TGG | - | chr6_4:34287799-34287818 | None:intergenic | 25.0% |
| !! | TATCAATTACCTTTTCAGTT+TGG | + | chr6_4:34287848-34287867 | Msa0986280:intron | 25.0% |
| !! | TACATAGACTAACATTTTGT+AGG | - | chr6_4:34288144-34288163 | None:intergenic | 25.0% |
| !! | AACTGAATTTTGAATTCTCT+TGG | - | chr6_4:34288172-34288191 | None:intergenic | 25.0% |
| ! | TAGACATGATTATCATGATA+TGG | + | chr6_4:34288352-34288371 | Msa0986280:intron | 25.0% |
| !!! | TGTTTTTAGCTTCTATTCTT+TGG | + | chr6_4:34288418-34288437 | Msa0986280:intron | 25.0% |
| !!! | GTTTTTAGCTTCTATTCTTT+GGG | + | chr6_4:34288419-34288438 | Msa0986280:intron | 25.0% |
| ! | GATCTAATATTCAAATATGG+AGG | + | chr6_4:34288453-34288472 | Msa0986280:intron | 25.0% |
| ! | CAAATTATTGCAAATTGTCA+TGG | + | chr6_4:34288674-34288693 | Msa0986280:intron | 25.0% |
| !!! | TTTCGTACAAGATATTTTTG+TGG | + | chr6_4:34288717-34288736 | Msa0986280:intron | 25.0% |
| ! | GTTTATGGTTCATAAATTGT+TGG | + | chr6_4:34288942-34288961 | Msa0986280:intron | 25.0% |
| ! | TGAAAATTCAAAACTCATCT+TGG | - | chr6_4:34289749-34289768 | None:intergenic | 25.0% |
| ! | ATTGTGGAATTTGATATGAA+GGG | + | chr6_4:34290275-34290294 | Msa0986280:CDS | 25.0% |
| ! | AACTTGGTATATATCAGATA+TGG | + | chr6_4:34290327-34290346 | Msa0986280:CDS | 25.0% |
| !!! | TTTGTAGTAGGTTATTTTGT+AGG | - | chr6_4:34290384-34290403 | None:intergenic | 25.0% |
| ! | GTGTAACTTATATTTGTAGT+AGG | - | chr6_4:34290396-34290415 | None:intergenic | 25.0% |
| ! | ATGAAATATAAGTTACCTTG+AGG | - | chr6_4:34290418-34290437 | None:intergenic | 25.0% |
| ACTTGCATGTGATTTATGTT+TGG | + | chr6_4:34286489-34286508 | Msa0986280:intron | 30.0% | |
| CTTGCATGTGATTTATGTTT+GGG | + | chr6_4:34286490-34286509 | Msa0986280:intron | 30.0% | |
| TTGCATGTGATTTATGTTTG+GGG | + | chr6_4:34286491-34286510 | Msa0986280:intron | 30.0% | |
| ! | GGTTTGAAATAGAAATCTTG+GGG | + | chr6_4:34286560-34286579 | Msa0986280:intron | 30.0% |
| !! | TTGATGTTGATTGCTTTTCT+GGG | + | chr6_4:34286593-34286612 | Msa0986280:intron | 30.0% |
| TTGTGGAAAACAAGTGTATT+TGG | + | chr6_4:34286649-34286668 | Msa0986280:CDS | 30.0% | |
| TGTGGAAAACAAGTGTATTT+GGG | + | chr6_4:34286650-34286669 | Msa0986280:CDS | 30.0% | |
| ACATATGTGGTAGTTAAAAG+TGG | + | chr6_4:34286704-34286723 | Msa0986280:intron | 30.0% | |
| !! | TGGAGTTCTAAATTTCTAAC+TGG | - | chr6_4:34286934-34286953 | None:intergenic | 30.0% |
| ACTACAGAGATTACTTATGA+TGG | - | chr6_4:34286954-34286973 | None:intergenic | 30.0% | |
| ATTGAGACAATTGAGTGAAA+GGG | - | chr6_4:34287229-34287248 | None:intergenic | 30.0% | |
| AATTGAGACAATTGAGTGAA+AGG | - | chr6_4:34287230-34287249 | None:intergenic | 30.0% | |
| ACAATTGAGACAATCACATA+TGG | - | chr6_4:34287261-34287280 | None:intergenic | 30.0% | |
| !!! | GAAATTTTGGAGCATAAAGA+AGG | - | chr6_4:34287450-34287469 | None:intergenic | 30.0% |
| TTCTGATAAAAAATAGCCTC+AGG | + | chr6_4:34287467-34287486 | Msa0986280:intron | 30.0% | |
| AAGCAATCTAAATAACACTG+AGG | - | chr6_4:34287598-34287617 | None:intergenic | 30.0% | |
| AAATCATCTTGGCTTCAAAA+TGG | - | chr6_4:34287761-34287780 | None:intergenic | 30.0% | |
| ! | AACTCATCTGGACAATATTT+TGG | - | chr6_4:34287812-34287831 | None:intergenic | 30.0% |
| CACTAAAATCCAAACTGAAA+AGG | - | chr6_4:34287860-34287879 | None:intergenic | 30.0% | |
| ! | TTCTATAAGTTTAGGACTTG+AGG | + | chr6_4:34287951-34287970 | Msa0986280:intron | 30.0% |
| ! | TTTAGGACTTGAGGATATAT+AGG | + | chr6_4:34287960-34287979 | Msa0986280:intron | 30.0% |
| TTTCTCTAATATTACTTGGC+AGG | + | chr6_4:34288068-34288087 | Msa0986280:intron | 30.0% | |
| ! | AGTTTTGCTTATATGTTGCT+TGG | + | chr6_4:34288188-34288207 | Msa0986280:intron | 30.0% |
| !!! | TTGGTTTTATGTGTTTCTGA+AGG | + | chr6_4:34288207-34288226 | Msa0986280:intron | 30.0% |
| ! | TTTATGTGTTTCTGAAGGTT+AGG | + | chr6_4:34288212-34288231 | Msa0986280:intron | 30.0% |
| ! | TTATGTGTTTCTGAAGGTTA+GGG | + | chr6_4:34288213-34288232 | Msa0986280:intron | 30.0% |
| TTAGGGTTGAAAAAGATTGT+TGG | + | chr6_4:34288230-34288249 | Msa0986280:intron | 30.0% | |
| !!! | TTCCTATTTTTTTTGGTGAC+AGG | + | chr6_4:34288265-34288284 | Msa0986280:intron | 30.0% |
| !! | GATTTTGAGAAAGTTGAAGA+AGG | + | chr6_4:34288293-34288312 | Msa0986280:CDS | 30.0% |
| GCATAAAGTTTCAACTTTGA+AGG | + | chr6_4:34288559-34288578 | Msa0986280:intron | 30.0% | |
| !! | CAAACCAATCAATTTTGAAG+AGG | - | chr6_4:34288622-34288641 | None:intergenic | 30.0% |
| ! | TAATTTGGTTCATTTGACTG+AGG | + | chr6_4:34288767-34288786 | Msa0986280:intron | 30.0% |
| AGTAGAAACACAATGTATTG+AGG | + | chr6_4:34288792-34288811 | Msa0986280:intron | 30.0% | |
| AAACACAATGTATTGAGGTT+TGG | + | chr6_4:34288797-34288816 | Msa0986280:intron | 30.0% | |
| !! | AATTTGACCACTTGCTTTTA+TGG | + | chr6_4:34289088-34289107 | Msa0986280:intron | 30.0% |
| GTTAAATTCTGGTCAATAGA+TGG | + | chr6_4:34289303-34289322 | Msa0986280:intron | 30.0% | |
| TCTTGAAATGAGATGTGAAA+TGG | + | chr6_4:34289335-34289354 | Msa0986280:intron | 30.0% | |
| AATTGTAATTCCTACCTTTG+AGG | + | chr6_4:34289477-34289496 | Msa0986280:intron | 30.0% | |
| ! | GATCTAGAACAAGTATGTAA+AGG | + | chr6_4:34289505-34289524 | Msa0986280:intron | 30.0% |
| GCAATGAATGAATGATGATA+AGG | - | chr6_4:34289674-34289693 | None:intergenic | 30.0% | |
| TTGGAAATTATGGAAGATAC+AGG | - | chr6_4:34289725-34289744 | None:intergenic | 30.0% | |
| ! | TCATCTTGGATTGGAAATTA+TGG | - | chr6_4:34289735-34289754 | None:intergenic | 30.0% |
| ATTCAAAACTCATCTTGGAT+TGG | - | chr6_4:34289744-34289763 | None:intergenic | 30.0% | |
| ! | TTCTGAAAACATTGAAACCA+TGG | - | chr6_4:34289922-34289941 | None:intergenic | 30.0% |
| !!! | TAGACCTTATTTTGATCCAT+TGG | + | chr6_4:34290205-34290224 | Msa0986280:CDS | 30.0% |
| ATTGCCAATGGATCAAAATA+AGG | - | chr6_4:34290212-34290231 | None:intergenic | 30.0% | |
| CAATCTCTGATACTTCAATA+GGG | - | chr6_4:34290259-34290278 | None:intergenic | 30.0% | |
| ACAATCTCTGATACTTCAAT+AGG | - | chr6_4:34290260-34290279 | None:intergenic | 30.0% | |
| ! | TATTGAAGTATCAGAGATTG+TGG | + | chr6_4:34290259-34290278 | Msa0986280:CDS | 30.0% |
| GATTGTGGAATTTGATATGA+AGG | + | chr6_4:34290274-34290293 | Msa0986280:CDS | 30.0% | |
| TTGGAAGAATGTCAAAAACT+TGG | + | chr6_4:34290311-34290330 | Msa0986280:CDS | 30.0% | |
| CAAATATAAGTTACACCTCA+AGG | + | chr6_4:34290400-34290419 | Msa0986280:three_prime_UTR | 30.0% | |
| CCTATTCCAATTACCAATAG+AGG | - | chr6_4:34286358-34286377 | None:intergenic | 35.0% | |
| ! | CCTCTATTGGTAATTGGAAT+AGG | + | chr6_4:34286355-34286374 | Msa0986280:intron | 35.0% |
| ! | AATCTAAAGTGATCCTCTTC+AGG | + | chr6_4:34286394-34286413 | Msa0986280:intron | 35.0% |
| !! | CTTGATGTTGATTGCTTTTC+TGG | + | chr6_4:34286592-34286611 | Msa0986280:intron | 35.0% |
| ! | CTTTTCTGGGTTATCAGTTT+TGG | + | chr6_4:34286606-34286625 | Msa0986280:intron | 35.0% |
| !! | TTTGGTTCTATTTGTGATGC+AGG | + | chr6_4:34286624-34286643 | Msa0986280:intron | 35.0% |
| !! | TTGGTTCTATTTGTGATGCA+GGG | + | chr6_4:34286625-34286644 | Msa0986280:intron | 35.0% |
| TATCCTCAATGGAAATGATG+AGG | - | chr6_4:34287406-34287425 | None:intergenic | 35.0% | |
| ! | GGAAGTATATACATGGCTTT+AGG | - | chr6_4:34287429-34287448 | None:intergenic | 35.0% |
| ATTAAAGATGGAGTTTCCAG+AGG | - | chr6_4:34287526-34287545 | None:intergenic | 35.0% | |
| ! | AGTCTACTCAAGTTGTTCAA+GGG | - | chr6_4:34287575-34287594 | None:intergenic | 35.0% |
| GAGATTCACAATGATGCTAA+TGG | - | chr6_4:34287687-34287706 | None:intergenic | 35.0% | |
| GTCAAAGAGCAAAATCATCT+TGG | - | chr6_4:34287772-34287791 | None:intergenic | 35.0% | |
| ! | ATTTTGGATAACGAAGATGG+TGG | - | chr6_4:34287796-34287815 | None:intergenic | 35.0% |
| ! | GGATGTACTAAAAGCATAGT+GGG | + | chr6_4:34287922-34287941 | Msa0986280:intron | 35.0% |
| GGTTCTGCTTCTATAAGTTT+AGG | + | chr6_4:34287943-34287962 | Msa0986280:intron | 35.0% | |
| ! | GCTTATAGAGTTGTTGATGA+AGG | + | chr6_4:34288090-34288109 | Msa0986280:CDS | 35.0% |
| ! | TAGAGTTGTTGATGAAGGTT+AGG | + | chr6_4:34288095-34288114 | Msa0986280:CDS | 35.0% |
| CTCCTGTCACCAAAAAAAAT+AGG | - | chr6_4:34288270-34288289 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTGGTGACAGGAGA+TGG | + | chr6_4:34288271-34288290 | Msa0986280:intron | 35.0% |
| TTCCAATGCTCAATGTTGTT+TGG | + | chr6_4:34288590-34288609 | Msa0986280:intron | 35.0% | |
| AACCAAACAACATTGAGCAT+TGG | - | chr6_4:34288595-34288614 | None:intergenic | 35.0% | |
| !! | ACAAGATATTTTTGTGGCCT+TGG | + | chr6_4:34288723-34288742 | Msa0986280:intron | 35.0% |
| ! | ATGTATTGAGGTTTGGTTGA+TGG | + | chr6_4:34288804-34288823 | Msa0986280:intron | 35.0% |
| ! | GTTGATGGATAATGTGACAA+AGG | + | chr6_4:34288819-34288838 | Msa0986280:intron | 35.0% |
| AAGGAGATGAGAAAGAAACT+AGG | + | chr6_4:34288838-34288857 | Msa0986280:intron | 35.0% | |
| TCATAAATTGTTGGATGCAG+TGG | + | chr6_4:34288951-34288970 | Msa0986280:intron | 35.0% | |
| ! | AGCAATTGATAGCAGAATTG+AGG | + | chr6_4:34289039-34289058 | Msa0986280:intron | 35.0% |
| AAAGCAAGTGGTCAAATTTC+TGG | - | chr6_4:34289086-34289105 | None:intergenic | 35.0% | |
| !! | ACCACTTGCTTTTATGGAAA+TGG | + | chr6_4:34289094-34289113 | Msa0986280:intron | 35.0% |
| ACCATTTCCATAAAAGCAAG+TGG | - | chr6_4:34289098-34289117 | None:intergenic | 35.0% | |
| AGCTGCAAAACAAAATTGTG+AGG | - | chr6_4:34289375-34289394 | None:intergenic | 35.0% | |
| AGGTAGGAATTACAATTTCC+TGG | - | chr6_4:34289474-34289493 | None:intergenic | 35.0% | |
| !!! | ATTTGGTGTCTCTTTTTCCA+TGG | + | chr6_4:34289902-34289921 | Msa0986280:intron | 35.0% |
| ! | AAAGAGATTGATTCAGCTGA+TGG | - | chr6_4:34289999-34290018 | None:intergenic | 35.0% |
| !!! | GTATACGTGTTTGTTTTTGC+AGG | + | chr6_4:34290163-34290182 | Msa0986280:intron | 35.0% |
| ! | ATAGGGTATTTAACTTCACC+TGG | - | chr6_4:34290242-34290261 | None:intergenic | 35.0% |
| ! | AATTTGATATGAAGGGTGTG+TGG | + | chr6_4:34290282-34290301 | Msa0986280:CDS | 35.0% |
| ! | GCATGTCCTCTATTGGTAAT+TGG | + | chr6_4:34286349-34286368 | Msa0986280:intron | 40.0% |
| TATTTGTGATGCAGGGATTG+TGG | + | chr6_4:34286632-34286651 | Msa0986280:intron | 40.0% | |
| TGACCTCATCATTTCCATTG+AGG | + | chr6_4:34287400-34287419 | Msa0986280:intron | 40.0% | |
| !! | ATGGCTTTAGGTATCCTCAA+TGG | - | chr6_4:34287417-34287436 | None:intergenic | 40.0% |
| ! | GAGTCTACTCAAGTTGTTCA+AGG | - | chr6_4:34287576-34287595 | None:intergenic | 40.0% |
| CTACTAATGTCGCGGAAATT+AGG | - | chr6_4:34287659-34287678 | None:intergenic | 40.0% | |
| TGGTATTGCTACTAATGTCG+CGG | - | chr6_4:34287667-34287686 | None:intergenic | 40.0% | |
| CAGAGAGTTAGAAACTCATC+TGG | - | chr6_4:34287824-34287843 | None:intergenic | 40.0% | |
| CAGATGAGTTTCTAACTCTC+TGG | + | chr6_4:34287822-34287841 | Msa0986280:intron | 40.0% | |
| TGAGTCCTTCTGATGTTACT+TGG | + | chr6_4:34287900-34287919 | Msa0986280:intron | 40.0% | |
| ! | GAGTCCTTCTGATGTTACTT+GGG | + | chr6_4:34287901-34287920 | Msa0986280:intron | 40.0% |
| ACATCCCAAGTAACATCAGA+AGG | - | chr6_4:34287908-34287927 | None:intergenic | 40.0% | |
| ! | GGGATGTACTAAAAGCATAG+TGG | + | chr6_4:34287921-34287940 | Msa0986280:intron | 40.0% |
| ! | GTTGATGAAGGTTAGGAATG+AGG | + | chr6_4:34288102-34288121 | Msa0986280:CDS | 40.0% |
| TGCGCCTCTTCAAAATTGAT+TGG | + | chr6_4:34288615-34288634 | Msa0986280:intron | 40.0% | |
| AAAAAGCTATATCTGCGCCA+AGG | - | chr6_4:34288743-34288762 | None:intergenic | 40.0% | |
| ! | TGCAGTGGTTTGAAATAAGC+AGG | + | chr6_4:34288966-34288985 | Msa0986280:intron | 40.0% |
| ATTGGTTGAGATCTGACAGA+AGG | + | chr6_4:34289126-34289145 | Msa0986280:CDS | 40.0% | |
| TTGGTTGAGATCTGACAGAA+GGG | + | chr6_4:34289127-34289146 | Msa0986280:CDS | 40.0% | |
| CTGGTCAATAGATGGATGAT+TGG | + | chr6_4:34289311-34289330 | Msa0986280:intron | 40.0% | |
| GCATTGTTGATCACACTTTC+TGG | + | chr6_4:34289441-34289460 | Msa0986280:intron | 40.0% | |
| TTGTTGATCACACTTTCTGG+TGG | + | chr6_4:34289444-34289463 | Msa0986280:intron | 40.0% | |
| TTCTAGATCAGATGCCTCAA+AGG | - | chr6_4:34289494-34289513 | None:intergenic | 40.0% | |
| GTTGCAACGGATATATGACA+AGG | - | chr6_4:34289608-34289627 | None:intergenic | 40.0% | |
| ! | ATTGATTCAGCTGATGGTGA+GGG | - | chr6_4:34289993-34290012 | None:intergenic | 40.0% |
| CTTAGAGATTTCTGCAGAGT+AGG | - | chr6_4:34290070-34290089 | None:intergenic | 40.0% | |
| CTACTCTGCAGAAATCTCTA+AGG | + | chr6_4:34290068-34290087 | Msa0986280:intron | 40.0% | |
| CCTGGTTTAGTAATTGCCAA+TGG | - | chr6_4:34290224-34290243 | None:intergenic | 40.0% | |
| CCATTGGCAATTACTAAACC+AGG | + | chr6_4:34290221-34290240 | Msa0986280:CDS | 40.0% | |
| ! | GCTTGGTTGATTTCTTCCTC+TGG | + | chr6_4:34287507-34287526 | Msa0986280:intron | 45.0% |
| AGCTTCTATTCTTTGGGTGC+AGG | + | chr6_4:34288425-34288444 | Msa0986280:intron | 45.0% | |
| TGGAAATGGTTGCTGCAGAT+TGG | + | chr6_4:34289108-34289127 | Msa0986280:intron | 45.0% | |
| GACAGAAGGGAAGATGATCT+TGG | + | chr6_4:34289140-34289159 | Msa0986280:CDS | 45.0% | |
| AGAAGGGAAGATGATCTTGG+TGG | + | chr6_4:34289143-34289162 | Msa0986280:CDS | 45.0% | |
| ! | AGCATTGTGCAGGTTGACTT+TGG | + | chr6_4:34289176-34289195 | Msa0986280:intron | 45.0% |
| !!! | GCAGGTTGACTTTGGTGTTT+TGG | + | chr6_4:34289184-34289203 | Msa0986280:intron | 45.0% |
| AGATCAGATGCCTCAAAGGT+AGG | - | chr6_4:34289490-34289509 | None:intergenic | 45.0% | |
| CTGTGACTCGAAAGTTGCAA+CGG | - | chr6_4:34289621-34289640 | None:intergenic | 45.0% | |
| ! | CTTTCGAGTCACAGACACTT+TGG | + | chr6_4:34289627-34289646 | Msa0986280:intron | 45.0% |
| AGCTGCTTGCAATCTCTCTA+TGG | + | chr6_4:34289950-34289969 | Msa0986280:intron | 45.0% | |
| ! | GATTGATTCAGCTGATGGTG+AGG | - | chr6_4:34289994-34290013 | None:intergenic | 45.0% |
| TCAACCTGCACAATGCTCCT+AGG | - | chr6_4:34289173-34289192 | None:intergenic | 50.0% | |
| ! | ACACTTTCTGGTGGCTATCC+AGG | + | chr6_4:34289453-34289472 | Msa0986280:intron | 50.0% |
| ! | GAAGGGTGTGTGGACATCAT+TGG | + | chr6_4:34290292-34290311 | Msa0986280:CDS | 50.0% |
| ! | ATGATCTTGGTGGCCGTCCT+AGG | + | chr6_4:34289153-34289172 | Msa0986280:CDS | 55.0% |
| CCTGCACAATGCTCCTAGGA+CGG | - | chr6_4:34289169-34289188 | None:intergenic | 55.0% | |
| !! | CCGTCCTAGGAGCATTGTGC+AGG | + | chr6_4:34289166-34289185 | Msa0986280:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 34286347 | 34290504 | 34286347 | ID=Msa0986280;Name=Msa0986280 |
| chr6_4 | mRNA | 34286347 | 34290504 | 34286347 | ID=Msa0986280-mRNA-1;Parent=Msa0986280;Name=Msa0986280-mRNA-1;_AED=0.41;_eAED=0.42;_QI=0|0.6|0.83|1|0.6|0.66|6|143|110 |
| chr6_4 | exon | 34286347 | 34286352 | 34286347 | ID=Msa0986280-mRNA-1:exon:8893;Parent=Msa0986280-mRNA-1 |
| chr6_4 | exon | 34286646 | 34286671 | 34286646 | ID=Msa0986280-mRNA-1:exon:8894;Parent=Msa0986280-mRNA-1 |
| chr6_4 | exon | 34288090 | 34288123 | 34288090 | ID=Msa0986280-mRNA-1:exon:8895;Parent=Msa0986280-mRNA-1 |
| chr6_4 | exon | 34288287 | 34288314 | 34288287 | ID=Msa0986280-mRNA-1:exon:8896;Parent=Msa0986280-mRNA-1 |
| chr6_4 | exon | 34289126 | 34289187 | 34289126 | ID=Msa0986280-mRNA-1:exon:8897;Parent=Msa0986280-mRNA-1 |
| chr6_4 | exon | 34290185 | 34290504 | 34290185 | ID=Msa0986280-mRNA-1:exon:8898;Parent=Msa0986280-mRNA-1 |
| chr6_4 | CDS | 34286347 | 34286352 | 34286347 | ID=Msa0986280-mRNA-1:cds;Parent=Msa0986280-mRNA-1 |
| chr6_4 | CDS | 34286646 | 34286671 | 34286646 | ID=Msa0986280-mRNA-1:cds;Parent=Msa0986280-mRNA-1 |
| chr6_4 | CDS | 34288090 | 34288123 | 34288090 | ID=Msa0986280-mRNA-1:cds;Parent=Msa0986280-mRNA-1 |
| chr6_4 | CDS | 34288287 | 34288314 | 34288287 | ID=Msa0986280-mRNA-1:cds;Parent=Msa0986280-mRNA-1 |
| chr6_4 | CDS | 34289126 | 34289187 | 34289126 | ID=Msa0986280-mRNA-1:cds;Parent=Msa0986280-mRNA-1 |
| chr6_4 | CDS | 34290185 | 34290361 | 34290185 | ID=Msa0986280-mRNA-1:cds;Parent=Msa0986280-mRNA-1 |
| chr6_4 | three_prime_UTR | 34290362 | 34290504 | 34290362 | ID=Msa0986280-mRNA-1:three_prime_utr;Parent=Msa0986280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
