Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534230 | XP_027190237.1 | 79.412 | 68 | 7 | 2 | 82 | 148 | 97 | 158 | 7.20e-25 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534230 | sp|P26690|6DCS_SOYBN | 64.815 | 54 | 18 | 1 | 96 | 148 | 105 | 158 | 1.42e-17 | 80.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534230 | A0A3Q7YB43 | 79.412 | 68 | 7 | 2 | 82 | 148 | 97 | 158 | 3.44e-25 | 108 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0101750 | Msa0534230 | 0.813974 | 1.950824e-51 | -8.615850e-47 |
| Msa0313960 | Msa0534230 | 0.913888 | 3.647815e-84 | -8.615850e-47 |
| Msa0534230 | Msa0748970 | 0.800484 | 1.410594e-48 | -8.615850e-47 |
| Msa0534230 | Msa0901070 | 0.800608 | 1.330537e-48 | -8.615850e-47 |
| Msa0534230 | Msa0923480 | 0.898842 | 3.568014e-77 | -8.615850e-47 |
| Msa0534230 | Msa0986280 | 0.839499 | 1.527993e-57 | -8.615850e-47 |
| Msa0534230 | Msa1226990 | 0.959938 | 5.377096e-118 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534230 | MtrunA17_Chr3g0121001 | 79.412 | 68 | 7 | 2 | 82 | 148 | 98 | 159 | 3.03e-28 | 106 |
| Msa0534230 | MtrunA17_Chr1g0173621 | 65.455 | 55 | 18 | 1 | 95 | 148 | 105 | 159 | 1.20e-16 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534230 | AT1G59960.1 | 47.273 | 55 | 28 | 1 | 95 | 148 | 106 | 160 | 3.58e-12 | 63.2 |
Find 43 sgRNAs with CRISPR-Local
Find 590 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTGGAAAACAAGTGTATT+TGG | 0.188508 | 4_1:+9577966 | Msa0534230:CDS |
| ACTTCACCTGGTTTAGTAAT+TGG | 0.192844 | 4_1:-9581543 | None:intergenic |
| ACAATCTCTGATACTTCAAT+AGG | 0.347637 | 4_1:-9581573 | None:intergenic |
| TGTGGAAAACAAGTGTATTT+GGG | 0.366345 | 4_1:+9577967 | Msa0534230:CDS |
| TTGGCCAATGGATCAAAATA+AGG | 0.425035 | 4_1:-9581524 | None:intergenic |
| GAGAGGGACGAAAGAGAGAA+AGG | 0.428730 | 4_1:+9577436 | Msa0534230:CDS |
| CTACTCTGCAGAAATCTCTA+AGG | 0.431594 | 4_1:+9581384 | Msa0534230:intron |
| CAATCTCTGATACTTCAATA+GGG | 0.455333 | 4_1:-9581572 | None:intergenic |
| ATGATCTTGGTGGCCGTCCT+AGG | 0.459779 | 4_1:+9580470 | Msa0534230:CDS |
| AATTGTAATTCCTACCTTTG+AGG | 0.471415 | 4_1:+9580795 | Msa0534230:CDS |
| GATTGTGGAATTTGATATGA+AGG | 0.479491 | 4_1:+9581590 | Msa0534230:CDS |
| GCTTATAGAGTTGTTGATGA+AGG | 0.484797 | 4_1:+9579407 | Msa0534230:CDS |
| GACAGAAGGGAAGATGATCT+TGG | 0.506460 | 4_1:+9580457 | Msa0534230:CDS |
| CCGTCCTAGGAGCATTGTGC+AGG | 0.514421 | 4_1:+9580483 | Msa0534230:CDS |
| ATCGGTGCAGATCGGAGTGT+TGG | 0.515737 | 4_1:-9577482 | None:intergenic |
| GAGAGAAAGAGATGAAAGAG+AGG | 0.516056 | 4_1:+9577399 | Msa0534230:exon |
| AGGATACCTCTGATGCAAAT+CGG | 0.521021 | 4_1:-9577500 | None:intergenic |
| GAAGGGTGTGTGGACATCAT+TGG | 0.524351 | 4_1:+9581608 | Msa0534230:CDS |
| GGAGTAGAGAAAGTTGAAGA+AGG | 0.530462 | 4_1:+9579609 | Msa0534230:CDS |
| TCAACCTGCACAATGCTCCT+AGG | 0.532591 | 4_1:-9580487 | None:intergenic |
| ATAGGGTATTTAACTTCACC+TGG | 0.535676 | 4_1:-9581555 | None:intergenic |
| TGTTTGTGATGCAGGGATTG+TGG | 0.537930 | 4_1:+9577949 | Msa0534230:intron |
| TTCTAGATCAGATGCCTCAA+AGG | 0.539627 | 4_1:-9580809 | None:intergenic |
| GTGTTGGACGGCGAGGTCGA+CGG | 0.546335 | 4_1:-9577466 | None:intergenic |
| TATTGAAGTATCAGAGATTG+TGG | 0.554195 | 4_1:+9581575 | Msa0534230:CDS |
| GAGAAAGAGATGAAAGAGAG+GGG | 0.554499 | 4_1:+9577401 | Msa0534230:exon |
| AGAGGGACGAAAGAGAGAAA+GGG | 0.556648 | 4_1:+9577437 | Msa0534230:CDS |
| CATTGGCCAATTACTAAACC+AGG | 0.561140 | 4_1:+9581537 | Msa0534230:CDS |
| CTGGTTTAGTAATTGGCCAA+TGG | 0.564395 | 4_1:-9581536 | None:intergenic |
| AGAGAAAGAGATGAAAGAGA+GGG | 0.565885 | 4_1:+9577400 | Msa0534230:exon |
| ATTGGTTGAGATCTGACAGA+AGG | 0.589843 | 4_1:+9580443 | Msa0534230:CDS |
| AGATCAGATGCCTCAAAGGT+AGG | 0.602073 | 4_1:-9580805 | None:intergenic |
| TTGGTTGAGATCTGACAGAA+GGG | 0.602460 | 4_1:+9580444 | Msa0534230:CDS |
| TGATGCAAATCGGTGCAGAT+CGG | 0.607076 | 4_1:-9577490 | None:intergenic |
| GATCGGAGTGTTGGACGGCG+AGG | 0.614383 | 4_1:-9577473 | None:intergenic |
| GTGCAGATCGGAGTGTTGGA+CGG | 0.620791 | 4_1:-9577478 | None:intergenic |
| TCTGCACCGATTTGCATCAG+AGG | 0.631626 | 4_1:+9577494 | Msa0534230:CDS |
| CCTGCACAATGCTCCTAGGA+CGG | 0.659595 | 4_1:-9580483 | None:intergenic |
| AGAAAGAGATGAAAGAGAGG+GGG | 0.666227 | 4_1:+9577402 | Msa0534230:exon |
| ATTGTGGAATTTGATATGAA+GGG | 0.667822 | 4_1:+9581591 | Msa0534230:CDS |
| AGAAGGGAAGATGATCTTGG+TGG | 0.671197 | 4_1:+9580460 | Msa0534230:CDS |
| TTGGACGGCGAGGTCGACGG+CGG | 0.673722 | 4_1:-9577463 | None:intergenic |
| AATTTGATATGAAGGGTGTG+TGG | 0.685210 | 4_1:+9581598 | Msa0534230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGTTTTGTTATTAAAAT+TGG | + | chr4_1:9578051-9578070 | Msa0534230:intron | 10.0% |
| !!! | TAATAGTATTTTTCTTTAAA+CGG | + | chr4_1:9581797-9581816 | Msa0534230:intron | 10.0% |
| !! | TTCAAAATAAAACAAAAAAT+AGG | - | chr4_1:9585956-9585975 | None:intergenic | 10.0% |
| !!! | TTTTTTGTTTTATTTTGAAA+CGG | + | chr4_1:9585957-9585976 | Msa0534230:intron | 10.0% |
| !! | AAATATTTCAAAATAAAGAA+AGG | - | chr4_1:9587539-9587558 | None:intergenic | 10.0% |
| !!! | ATATTTAAATTTTTGAAGTA+TGG | - | chr4_1:9587674-9587693 | None:intergenic | 10.0% |
| !!! | CTATTTTTTATCAGAAATTT+TGG | - | chr4_1:9578780-9578799 | None:intergenic | 15.0% |
| !! | TTTGAAGAAATTATTAAAGA+TGG | - | chr4_1:9578855-9578874 | None:intergenic | 15.0% |
| !! | ATAATTAAAGCAAGAAAAAT+GGG | - | chr4_1:9579323-9579342 | None:intergenic | 15.0% |
| !! | TATAATTAAAGCAAGAAAAA+TGG | - | chr4_1:9579324-9579343 | None:intergenic | 15.0% |
| !! | TAAGATCTAATATTCAAATA+TGG | + | chr4_1:9579766-9579785 | Msa0534230:intron | 15.0% |
| !!! | AATGTCTCATTTTTTTAAAA+TGG | + | chr4_1:9580320-9580339 | Msa0534230:intron | 15.0% |
| !! | TTTGATTAAATGTTAAATTC+TGG | + | chr4_1:9580610-9580629 | Msa0534230:intron | 15.0% |
| !! | TCAAAATATTTGAGTAAAAA+TGG | + | chr4_1:9580866-9580885 | Msa0534230:intron | 15.0% |
| !! | AAGAAAAATACTATTATGAT+TGG | - | chr4_1:9581793-9581812 | None:intergenic | 15.0% |
| !! | GATTTATAATAAACACAAAT+TGG | - | chr4_1:9583048-9583067 | None:intergenic | 15.0% |
| !! | AAAACGATAATAATAATCTT+TGG | - | chr4_1:9583699-9583718 | None:intergenic | 15.0% |
| !! | TAGAGAGATAAATTATAATT+TGG | - | chr4_1:9584846-9584865 | None:intergenic | 15.0% |
| !! | AATTATAATTTATCTCTCTA+AGG | + | chr4_1:9584846-9584865 | Msa0534230:intron | 15.0% |
| !! | AGTAATAAAACATCAAAATT+TGG | + | chr4_1:9585614-9585633 | Msa0534230:intron | 15.0% |
| !!! | AACTAAATTAGATATTTTCA+GGG | + | chr4_1:9586314-9586333 | Msa0534230:intron | 15.0% |
| !!! | ATTTATACTTGGTTTTATAA+TGG | + | chr4_1:9586665-9586684 | Msa0534230:intron | 15.0% |
| !! | AACTTTAAATAACAACATAA+AGG | + | chr4_1:9586691-9586710 | Msa0534230:intron | 15.0% |
| !!! | ACAAAAAATTGGTAATAATA+GGG | - | chr4_1:9586766-9586785 | None:intergenic | 15.0% |
| !!! | AAAGTATATTGTTTTTAGTT+AGG | + | chr4_1:9587254-9587273 | Msa0534230:intron | 15.0% |
| !! | ATCATATAAATCAACTATAT+GGG | - | chr4_1:9587462-9587481 | None:intergenic | 15.0% |
| !! | AATCATATAAATCAACTATA+TGG | - | chr4_1:9587463-9587482 | None:intergenic | 15.0% |
| !!! | GATATTAAGTTGTTAAATAT+TGG | - | chr4_1:9588091-9588110 | None:intergenic | 15.0% |
| !! | TTTAACAACTTAATATCTAA+TGG | + | chr4_1:9588094-9588113 | Msa0534230:intron | 15.0% |
| !! | TCATGAAAAACAAAACAAAA+CGG | - | chr4_1:9577635-9577654 | None:intergenic | 20.0% |
| !! | TAAAAAAAATAAACCTGAAG+AGG | - | chr4_1:9577728-9577747 | None:intergenic | 20.0% |
| !!! | TTGATGTTGAATTATTTTCT+GGG | + | chr4_1:9577766-9577785 | Msa0534230:intron | 20.0% |
| !!! | TGATGTTTTTGTTATTGAAT+TGG | + | chr4_1:9578088-9578107 | Msa0534230:intron | 20.0% |
| !! | AATCAAATTCAAAGAAAGTT+AGG | - | chr4_1:9578374-9578393 | None:intergenic | 20.0% |
| !!! | TATATGAGTGTATGTTTTAA+AGG | + | chr4_1:9578599-9578618 | Msa0534230:intron | 20.0% |
| !! | TAATTAAAGCAAGAAAAATG+GGG | - | chr4_1:9579322-9579341 | None:intergenic | 20.0% |
| !!! | TGTTTTTCTCTAATATTACT+TGG | + | chr4_1:9579381-9579400 | Msa0534230:intron | 20.0% |
| !! | TAGACATAATTATCATGATA+TGG | + | chr4_1:9579668-9579687 | Msa0534230:intron | 20.0% |
| !!! | TATAGCTTTTTCTCTTAATT+TGG | + | chr4_1:9580068-9580087 | Msa0534230:intron | 20.0% |
| !! | TAGTGATTTCATGATATATA+AGG | + | chr4_1:9580228-9580247 | Msa0534230:intron | 20.0% |
| !!! | ATATAAGGTTTTGATGTTTA+TGG | + | chr4_1:9580243-9580262 | Msa0534230:intron | 20.0% |
| !! | ATATGTAAGTAATTACTTGA+TGG | - | chr4_1:9580550-9580569 | None:intergenic | 20.0% |
| !!! | TGAGTTTTGAATTTTCAAAA+TGG | + | chr4_1:9581067-9581086 | Msa0534230:intron | 20.0% |
| !!! | GAGTTTTGAATTTTCAAAAT+GGG | + | chr4_1:9581068-9581087 | Msa0534230:intron | 20.0% |
| !!! | AGTTTTGAATTTTCAAAATG+GGG | + | chr4_1:9581069-9581088 | Msa0534230:intron | 20.0% |
| !!! | TTTGTTCAATGTTTGAAATT+TGG | + | chr4_1:9581201-9581220 | Msa0534230:intron | 20.0% |
| !!! | TCTTTGTTACTTCTAAATTA+TGG | + | chr4_1:9581330-9581349 | Msa0534230:intron | 20.0% |
| !!! | CTTTGTTACTTCTAAATTAT+GGG | + | chr4_1:9581331-9581350 | Msa0534230:intron | 20.0% |
| !!! | TCTTTTATATATGTTGTTAC+AGG | - | chr4_1:9581674-9581693 | None:intergenic | 20.0% |
| !!! | GAAATTTTATATCAGTTTGA+TGG | + | chr4_1:9581823-9581842 | Msa0534230:intron | 20.0% |
| !! | ATCTATATATCTATCTATCA+AGG | - | chr4_1:9582592-9582611 | None:intergenic | 20.0% |
| !! | TGTATTTACCATACAAAAAA+TGG | + | chr4_1:9582774-9582793 | Msa0534230:intron | 20.0% |
| !! | CAAAAGAAAAGAGATAAAAT+GGG | - | chr4_1:9583150-9583169 | None:intergenic | 20.0% |
| !! | TCAAAAGAAAAGAGATAAAA+TGG | - | chr4_1:9583151-9583170 | None:intergenic | 20.0% |
| !! | ACGATTAAAAATCACTAAAT+AGG | - | chr4_1:9583629-9583648 | None:intergenic | 20.0% |
| !! | ACTATTAGTAGAGAAAAATA+AGG | + | chr4_1:9584170-9584189 | Msa0534230:intron | 20.0% |
| !! | ATAAAATCTTACCTATCATT+TGG | - | chr4_1:9584481-9584500 | None:intergenic | 20.0% |
| !! | ACTACTTAATAGTACTTAAT+TGG | + | chr4_1:9584542-9584561 | Msa0534230:intron | 20.0% |
| !! | TAATTGATTGTATAACTCTA+AGG | - | chr4_1:9584761-9584780 | None:intergenic | 20.0% |
| !!! | AACTTATTTTATAAGGTCTT+AGG | - | chr4_1:9585204-9585223 | None:intergenic | 20.0% |
| !!! | GGTTCTTAACTTATTTTATA+AGG | - | chr4_1:9585211-9585230 | None:intergenic | 20.0% |
| !!! | TATTTTTATGTCAATGCATT+GGG | - | chr4_1:9585232-9585251 | None:intergenic | 20.0% |
| !!! | TTATTTTTATGTCAATGCAT+TGG | - | chr4_1:9585233-9585252 | None:intergenic | 20.0% |
| !!! | GTTTTCTGATAAATGTAAAA+TGG | - | chr4_1:9585580-9585599 | None:intergenic | 20.0% |
| !!! | GAACTAAATTAGATATTTTC+AGG | + | chr4_1:9586313-9586332 | Msa0534230:intron | 20.0% |
| !!! | ACTAAATTAGATATTTTCAG+GGG | + | chr4_1:9586315-9586334 | Msa0534230:intron | 20.0% |
| !!! | AAGACATTTTGATTTATACT+TGG | + | chr4_1:9586654-9586673 | Msa0534230:intron | 20.0% |
| !!! | CAAAAAATTGGTAATAATAG+GGG | - | chr4_1:9586765-9586784 | None:intergenic | 20.0% |
| !!! | CACAAAAAATTGGTAATAAT+AGG | - | chr4_1:9586767-9586786 | None:intergenic | 20.0% |
| !!! | ATGTTTTATTTGTCTTTGTA+TGG | + | chr4_1:9586798-9586817 | Msa0534230:intron | 20.0% |
| !!! | CTTTTACAAATGTTAAAGAA+TGG | - | chr4_1:9586951-9586970 | None:intergenic | 20.0% |
| !! | TACAGAATATAACTAATCTT+AGG | - | chr4_1:9587026-9587045 | None:intergenic | 20.0% |
| !! | TTAAAAAGAGAGAATGATTT+AGG | + | chr4_1:9587096-9587115 | Msa0534230:intron | 20.0% |
| !! | TTTAGGTGATTCAAAAAAAA+TGG | - | chr4_1:9587125-9587144 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGAATCACCTAAA+AGG | + | chr4_1:9587125-9587144 | Msa0534230:intron | 20.0% |
| !!! | TAAAACAACAATAACCTTTT+AGG | - | chr4_1:9587142-9587161 | None:intergenic | 20.0% |
| !!! | AGTTGATTTATATGATTGTA+TGG | + | chr4_1:9587466-9587485 | Msa0534230:intron | 20.0% |
| !! | TTGTAAAAAAATTGTTCCAA+AGG | - | chr4_1:9587600-9587619 | None:intergenic | 20.0% |
| !! | ATTAAAGCATATATAATCGA+CGG | - | chr4_1:9587638-9587657 | None:intergenic | 20.0% |
| !!! | GGATATTATAATTTTGTGAA+TGG | + | chr4_1:9587810-9587829 | Msa0534230:intron | 20.0% |
| !! | TGTGTAAATTATTACAGATA+AGG | + | chr4_1:9588010-9588029 | Msa0534230:intron | 20.0% |
| !! | TTTGTAACAGTATTTATTAG+CGG | + | chr4_1:9588140-9588159 | Msa0534230:intron | 20.0% |
| !! | CTTGATGTTGAATTATTTTC+TGG | + | chr4_1:9577765-9577784 | Msa0534230:intron | 25.0% |
| ! | TGTTCATCACAACAAATATT+AGG | + | chr4_1:9577856-9577875 | Msa0534230:intron | 25.0% |
| !! | TAGGTTTGAAATAGAAATCT+TGG | + | chr4_1:9577875-9577894 | Msa0534230:intron | 25.0% |
| !! | AGGTTTGAAATAGAAATCTT+GGG | + | chr4_1:9577876-9577895 | Msa0534230:intron | 25.0% |
| ! | TATAAGATCAGTTACATATG+TGG | + | chr4_1:9578008-9578027 | Msa0534230:intron | 25.0% |
| !!! | ATTTGAGCATTCATTTTAAC+AGG | - | chr4_1:9578169-9578188 | None:intergenic | 25.0% |
| ! | TAAATTTCTAACTGGATCTA+AGG | - | chr4_1:9578243-9578262 | None:intergenic | 25.0% |
| ! | GTTAAGATTATGATGTTAAC+TGG | + | chr4_1:9578328-9578347 | Msa0534230:intron | 25.0% |
| !!! | TTTTGAGTTGTTTGTTTTAG+AGG | + | chr4_1:9578637-9578656 | Msa0534230:intron | 25.0% |
| !! | TAAAGAAGGAAGTATATACA+TGG | - | chr4_1:9578753-9578772 | None:intergenic | 25.0% |
| ! | ATTAAAAAACATGAAACCTG+AGG | - | chr4_1:9578803-9578822 | None:intergenic | 25.0% |
| !!! | TCAGGTTTCATGTTTTTTAA+TGG | + | chr4_1:9578802-9578821 | Msa0534230:intron | 25.0% |
| !!! | TTTCATGTTTTTTAATGGCT+TGG | + | chr4_1:9578807-9578826 | Msa0534230:intron | 25.0% |
| !!! | AATATTTTGGATAACGAAGA+TGG | - | chr4_1:9579116-9579135 | None:intergenic | 25.0% |
| !! | AACTCATTTGGACAATATTT+TGG | - | chr4_1:9579129-9579148 | None:intergenic | 25.0% |
| !! | TATCAATTACCTTTTCAGTT+TGG | + | chr4_1:9579165-9579184 | Msa0534230:intron | 25.0% |
| !! | TACATAGACTAACATTTTGT+AGG | - | chr4_1:9579461-9579480 | None:intergenic | 25.0% |
| !! | AACTGAATTTTGAATTCTCT+TGG | - | chr4_1:9579489-9579508 | None:intergenic | 25.0% |
| !!! | TTGATTTTATGTGTTTCTGA+AGG | + | chr4_1:9579524-9579543 | Msa0534230:intron | 25.0% |
| ! | TTAGGGTTGAAAAATATTGT+TGG | + | chr4_1:9579547-9579566 | Msa0534230:intron | 25.0% |
| !!! | TTCCTATTTTTTTTTGTGAC+AGG | + | chr4_1:9579582-9579601 | Msa0534230:intron | 25.0% |
| !!! | TGTTTTTAGCTTCTATTCTT+TGG | + | chr4_1:9579734-9579753 | Msa0534230:intron | 25.0% |
| !!! | GTTTTTAGCTTCTATTCTTT+GGG | + | chr4_1:9579735-9579754 | Msa0534230:intron | 25.0% |
| ! | GATCTAATATTCAAATATGG+AGG | + | chr4_1:9579769-9579788 | Msa0534230:intron | 25.0% |
| ! | CAAATTATTGCAAATTGTCA+TGG | + | chr4_1:9579990-9580009 | Msa0534230:intron | 25.0% |
| !!! | TTTCGTACAAGATATTTTTG+TGG | + | chr4_1:9580033-9580052 | Msa0534230:intron | 25.0% |
| ! | TGAAAATTCAAAACTCATCT+TGG | - | chr4_1:9581064-9581083 | None:intergenic | 25.0% |
| ! | ATTGTGGAATTTGATATGAA+GGG | + | chr4_1:9581591-9581610 | Msa0534230:CDS | 25.0% |
| ! | AACTTGGTATATATCAGATA+TGG | + | chr4_1:9581643-9581662 | Msa0534230:intron | 25.0% |
| !!! | TTTGTAGTAGGTTATTTTGT+AGG | - | chr4_1:9581700-9581719 | None:intergenic | 25.0% |
| ! | GTGTAACTTATATTTGTAGT+AGG | - | chr4_1:9581712-9581731 | None:intergenic | 25.0% |
| ! | ATGAAATATAAGTTACCTTG+AGG | - | chr4_1:9581734-9581753 | None:intergenic | 25.0% |
| ! | AATGTTACACATATAAGAAG+AGG | - | chr4_1:9581984-9582003 | None:intergenic | 25.0% |
| ! | CTTCTTATATGTGTAACATT+CGG | + | chr4_1:9581984-9582003 | Msa0534230:intron | 25.0% |
| ! | GAAAAAATAAGGAACTGAAT+GGG | + | chr4_1:9582525-9582544 | Msa0534230:intron | 25.0% |
| !!! | AAACTTATGAGCCATTTTTT+GGG | - | chr4_1:9582639-9582658 | None:intergenic | 25.0% |
| !!! | AAAACTTATGAGCCATTTTT+TGG | - | chr4_1:9582640-9582659 | None:intergenic | 25.0% |
| ! | TGACAACTATTCAAAAAACA+TGG | + | chr4_1:9582723-9582742 | Msa0534230:intron | 25.0% |
| ! | TATTCAAAAAACATGGTCAA+AGG | + | chr4_1:9582730-9582749 | Msa0534230:intron | 25.0% |
| ! | TCTTAGAAAGATTTGGATTT+GGG | + | chr4_1:9582973-9582992 | Msa0534230:intron | 25.0% |
| ! | ACAACTTATATGAAATTACC+AGG | - | chr4_1:9583097-9583116 | None:intergenic | 25.0% |
| !! | TTGTGTTAATTTTGCAAAGT+TGG | + | chr4_1:9583181-9583200 | Msa0534230:intron | 25.0% |
| ! | AGAATCATACCTAATATTGA+AGG | - | chr4_1:9583543-9583562 | None:intergenic | 25.0% |
| ! | TATGCTGTTATCATCTATAT+TGG | + | chr4_1:9583792-9583811 | Msa0534230:intron | 25.0% |
| !!! | CTATTTTTTGCATTCCAATA+TGG | + | chr4_1:9583855-9583874 | Msa0534230:intron | 25.0% |
| !!! | GAGTATTTTTTTGTTCCTTT+GGG | + | chr4_1:9583932-9583951 | Msa0534230:intron | 25.0% |
| !!! | AGTATTTTTTTGTTCCTTTG+GGG | + | chr4_1:9583933-9583952 | Msa0534230:intron | 25.0% |
| !!! | TTCTGGTTTTTATGTTGTAT+TGG | + | chr4_1:9583986-9584005 | Msa0534230:intron | 25.0% |
| ! | TGTGTTATCTTCATAAGTTT+GGG | + | chr4_1:9584077-9584096 | Msa0534230:intron | 25.0% |
| !! | CTAGATAGTTTATCTGTTTT+TGG | + | chr4_1:9584448-9584467 | Msa0534230:intron | 25.0% |
| !!! | TAGTTTATCTGTTTTTGGAA+AGG | + | chr4_1:9584453-9584472 | Msa0534230:intron | 25.0% |
| ! | TTAGTTTAGGTAGAAAGAAA+AGG | + | chr4_1:9584631-9584650 | Msa0534230:intron | 25.0% |
| ! | TAGTTTAGGTAGAAAGAAAA+GGG | + | chr4_1:9584632-9584651 | Msa0534230:intron | 25.0% |
| ! | ACATGATATGATGAAAAAGT+TGG | - | chr4_1:9584665-9584684 | None:intergenic | 25.0% |
| ! | ATGCATATGATATGAAAATG+TGG | + | chr4_1:9584785-9584804 | Msa0534230:intron | 25.0% |
| ! | ATATGATATGAAAATGTGGT+TGG | + | chr4_1:9584789-9584808 | Msa0534230:intron | 25.0% |
| !!! | CTAATCTAAGAGTATTGTAT+TGG | - | chr4_1:9584934-9584953 | None:intergenic | 25.0% |
| !!! | ATTTTTTTTAGCAGTGAAAG+CGG | - | chr4_1:9585461-9585480 | None:intergenic | 25.0% |
| !!! | ACATTTTGATTTTTCGCAAT+GGG | - | chr4_1:9585534-9585553 | None:intergenic | 25.0% |
| ! | TCTGATAAATGTAAAATGGT+TGG | - | chr4_1:9585576-9585595 | None:intergenic | 25.0% |
| ! | AAACATTAGAGAAGACATAA+TGG | + | chr4_1:9585838-9585857 | Msa0534230:intron | 25.0% |
| ! | CAAAACTTAATCACTTGAAA+TGG | - | chr4_1:9586357-9586376 | None:intergenic | 25.0% |
| !!! | GATCAAGTTTTTTATTTTCG+AGG | + | chr4_1:9586429-9586448 | Msa0534230:intron | 25.0% |
| !!! | ATCAAAATGTCTTGCTTTTA+TGG | - | chr4_1:9586647-9586666 | None:intergenic | 25.0% |
| ! | TCTTGATTTACTTGCAAATA+AGG | - | chr4_1:9586717-9586736 | None:intergenic | 25.0% |
| !! | CTTTAAGAAGCACAAAAAAT+TGG | - | chr4_1:9586777-9586796 | None:intergenic | 25.0% |
| !!! | ATTTTCCATGTGAAAAGTAT+TGG | - | chr4_1:9586927-9586946 | None:intergenic | 25.0% |
| ! | ATATAACTAATCTTAGGAGT+AGG | - | chr4_1:9587020-9587039 | None:intergenic | 25.0% |
| ! | GTTATATTCTGTAAAATGCA+TGG | + | chr4_1:9587033-9587052 | Msa0534230:intron | 25.0% |
| ! | AATGAATAGTGTAGAGAAAA+TGG | + | chr4_1:9587343-9587362 | Msa0534230:intron | 25.0% |
| ! | GACTTAAGTTTATGAGATTT+AGG | - | chr4_1:9587386-9587405 | None:intergenic | 25.0% |
| ! | TTTCAAAATAAAGAAAGGAG+TGG | - | chr4_1:9587534-9587553 | None:intergenic | 25.0% |
| ! | AAGGAAAAATGAGCAAATTA+AGG | - | chr4_1:9587581-9587600 | None:intergenic | 25.0% |
| !!! | TAATTTGCTCATTTTTCCTT+TGG | + | chr4_1:9587581-9587600 | Msa0534230:intron | 25.0% |
| ! | TTAAAGCATATATAATCGAC+GGG | - | chr4_1:9587637-9587656 | None:intergenic | 25.0% |
| !!! | AATATCTAATGGATTATGTG+AGG | + | chr4_1:9588105-9588124 | Msa0534230:intron | 25.0% |
| AACAAAACGGAACAACAAAT+CGG | - | chr4_1:9577622-9577641 | None:intergenic | 30.0% | |
| ACTTGCATGTGATTTATGTT+TGG | + | chr4_1:9577806-9577825 | Msa0534230:intron | 30.0% | |
| CTTGCATGTGATTTATGTTT+GGG | + | chr4_1:9577807-9577826 | Msa0534230:intron | 30.0% | |
| TTGCATGTGATTTATGTTTG+GGG | + | chr4_1:9577808-9577827 | Msa0534230:intron | 30.0% | |
| ! | GGTTTGAAATAGAAATCTTG+GGG | + | chr4_1:9577877-9577896 | Msa0534230:intron | 30.0% |
| !! | TTGATGTTGATTGCTTTTCT+GGG | + | chr4_1:9577910-9577929 | Msa0534230:intron | 30.0% |
| TTGTGGAAAACAAGTGTATT+TGG | + | chr4_1:9577966-9577985 | Msa0534230:CDS | 30.0% | |
| TGTGGAAAACAAGTGTATTT+GGG | + | chr4_1:9577967-9577986 | Msa0534230:CDS | 30.0% | |
| ACATATGTGGTAGTTAAAAG+TGG | + | chr4_1:9578021-9578040 | Msa0534230:intron | 30.0% | |
| TCTTTCATGATTGAAGCATA+TGG | - | chr4_1:9578216-9578235 | None:intergenic | 30.0% | |
| !! | TGGAGTTCTAAATTTCTAAC+TGG | - | chr4_1:9578251-9578270 | None:intergenic | 30.0% |
| ACTACAGAGATTACTTATGA+TGG | - | chr4_1:9578271-9578290 | None:intergenic | 30.0% | |
| GATTATGATGTTAACTGGAT+TGG | + | chr4_1:9578333-9578352 | Msa0534230:intron | 30.0% | |
| ATTGAGACAATTGAGTGAAA+GGG | - | chr4_1:9578547-9578566 | None:intergenic | 30.0% | |
| AATTGAGACAATTGAGTGAA+AGG | - | chr4_1:9578548-9578567 | None:intergenic | 30.0% | |
| ACAATTGAGACAATCACATA+TGG | - | chr4_1:9578579-9578598 | None:intergenic | 30.0% | |
| !!! | GAAATTTTGGAGCATAAAGA+AGG | - | chr4_1:9578767-9578786 | None:intergenic | 30.0% |
| TTCTGATAAAAAATAGCCTC+AGG | + | chr4_1:9578784-9578803 | Msa0534230:intron | 30.0% | |
| AAGCAATCTAAATAACACTG+AGG | - | chr4_1:9578915-9578934 | None:intergenic | 30.0% | |
| AAATCATCTTGGCTTCAAAA+TGG | - | chr4_1:9579078-9579097 | None:intergenic | 30.0% | |
| CACTAAAATCCAAACTGAAA+AGG | - | chr4_1:9579177-9579196 | None:intergenic | 30.0% | |
| ! | TTCTATAAGTTTAGGACTTG+AGG | + | chr4_1:9579268-9579287 | Msa0534230:intron | 30.0% |
| ! | TTTAGGACTTGAGGATATAT+AGG | + | chr4_1:9579277-9579296 | Msa0534230:intron | 30.0% |
| TTTCTCTAATATTACTTGGC+AGG | + | chr4_1:9579385-9579404 | Msa0534230:intron | 30.0% | |
| ! | TTTATGTGTTTCTGAAGGTT+AGG | + | chr4_1:9579529-9579548 | Msa0534230:intron | 30.0% |
| ! | TTATGTGTTTCTGAAGGTTA+GGG | + | chr4_1:9579530-9579549 | Msa0534230:intron | 30.0% |
| CTCCTGTCACAAAAAAAAAT+AGG | - | chr4_1:9579587-9579606 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTGTGACAGGAGA+TGG | + | chr4_1:9579588-9579607 | Msa0534230:intron | 30.0% |
| GCATAAAGTTTCAACTTTGA+AGG | + | chr4_1:9579875-9579894 | Msa0534230:intron | 30.0% | |
| !! | CAAACCAATCAATTTTGAAG+AGG | - | chr4_1:9579938-9579957 | None:intergenic | 30.0% |
| ! | TAATTTGGTTCATTTGACTG+AGG | + | chr4_1:9580083-9580102 | Msa0534230:intron | 30.0% |
| AGTAGAAACACAATGTATTG+AGG | + | chr4_1:9580108-9580127 | Msa0534230:intron | 30.0% | |
| AAACACAATGTATTGAGGTT+TGG | + | chr4_1:9580113-9580132 | Msa0534230:intron | 30.0% | |
| GTTTATGGTTCAGAAATTGT+TGG | + | chr4_1:9580258-9580277 | Msa0534230:intron | 30.0% | |
| !! | AATTTGACCACTTGCTTTTA+TGG | + | chr4_1:9580405-9580424 | Msa0534230:intron | 30.0% |
| GTTAAATTCTGGTCAATAGA+TGG | + | chr4_1:9580621-9580640 | Msa0534230:intron | 30.0% | |
| TCTTGAAATGAGATGTGAAA+TGG | + | chr4_1:9580653-9580672 | Msa0534230:intron | 30.0% | |
| AATTGTAATTCCTACCTTTG+AGG | + | chr4_1:9580795-9580814 | Msa0534230:CDS | 30.0% | |
| ! | GATCTAGAACAAGTATGTAA+AGG | + | chr4_1:9580823-9580842 | Msa0534230:intron | 30.0% |
| GCAATGAATGAATGATGATA+AGG | - | chr4_1:9580989-9581008 | None:intergenic | 30.0% | |
| TTGGAAATTATGGAAGATAC+AGG | - | chr4_1:9581040-9581059 | None:intergenic | 30.0% | |
| ! | TCATCTTGGATTGGAAATTA+TGG | - | chr4_1:9581050-9581069 | None:intergenic | 30.0% |
| ATTCAAAACTCATCTTGGAT+TGG | - | chr4_1:9581059-9581078 | None:intergenic | 30.0% | |
| ! | TTCTGAAAACATTGAAACCA+TGG | - | chr4_1:9581238-9581257 | None:intergenic | 30.0% |
| !!! | TAGACCTTATTTTGATCCAT+TGG | + | chr4_1:9581520-9581539 | Msa0534230:CDS | 30.0% |
| CAATCTCTGATACTTCAATA+GGG | - | chr4_1:9581575-9581594 | None:intergenic | 30.0% | |
| ACAATCTCTGATACTTCAAT+AGG | - | chr4_1:9581576-9581595 | None:intergenic | 30.0% | |
| ! | TATTGAAGTATCAGAGATTG+TGG | + | chr4_1:9581575-9581594 | Msa0534230:CDS | 30.0% |
| GATTGTGGAATTTGATATGA+AGG | + | chr4_1:9581590-9581609 | Msa0534230:CDS | 30.0% | |
| TTGGAAGAATGTCAAAAACT+TGG | + | chr4_1:9581627-9581646 | Msa0534230:CDS | 30.0% | |
| CAAATATAAGTTACACCTCA+AGG | + | chr4_1:9581716-9581735 | Msa0534230:intron | 30.0% | |
| CGATAGACACTAATTATCAA+AGG | - | chr4_1:9581852-9581871 | None:intergenic | 30.0% | |
| GTTTATGTGTTTACGAATTG+AGG | + | chr4_1:9581881-9581900 | Msa0534230:intron | 30.0% | |
| AATCACACTTGAAATAGTAC+AGG | - | chr4_1:9582035-9582054 | None:intergenic | 30.0% | |
| TGAAAAATCTCAATTTGTGC+AGG | + | chr4_1:9582117-9582136 | Msa0534230:intron | 30.0% | |
| ! | AAAAGCATAAGAGAGAGATT+GGG | + | chr4_1:9582155-9582174 | Msa0534230:intron | 30.0% |
| ATAAAATCATATGACCAGAG+GGG | - | chr4_1:9582256-9582275 | None:intergenic | 30.0% | |
| CATAAAATCATATGACCAGA+GGG | - | chr4_1:9582257-9582276 | None:intergenic | 30.0% | |
| ACATAAAATCATATGACCAG+AGG | - | chr4_1:9582258-9582277 | None:intergenic | 30.0% | |
| ACAGTTAAGCGGAAAAAATA+AGG | + | chr4_1:9582514-9582533 | Msa0534230:intron | 30.0% | |
| GGAAAAAATAAGGAACTGAA+TGG | + | chr4_1:9582524-9582543 | Msa0534230:intron | 30.0% | |
| !! | ATGGGTTTTTGTTTATGATC+AGG | + | chr4_1:9582543-9582562 | Msa0534230:intron | 30.0% |
| !! | TGGGTTTTTGTTTATGATCA+GGG | + | chr4_1:9582544-9582563 | Msa0534230:intron | 30.0% |
| AGAAACAAAAGCCCAAAAAA+TGG | + | chr4_1:9582625-9582644 | Msa0534230:intron | 30.0% | |
| CTTCTCTATAATGCATTTGT+AGG | + | chr4_1:9582676-9582695 | Msa0534230:intron | 30.0% | |
| GTTGTCATGATGTTAAATAG+TGG | - | chr4_1:9582710-9582729 | None:intergenic | 30.0% | |
| !!! | CTTATGAGCCATTTTTTGTA+TGG | - | chr4_1:9582785-9582804 | None:intergenic | 30.0% |
| CTTCTCTATAATGCATTTGT+AGG | + | chr4_1:9582676-9582695 | Msa0534230:intron | 30.0% | |
| ! | GATAAACGTCCAATGTATTT+TGG | - | chr4_1:9582913-9582932 | None:intergenic | 30.0% |
| !!! | CTGCTTTCATTTTAAAGCAT+TGG | - | chr4_1:9582951-9582970 | None:intergenic | 30.0% |
| GTCTTAGAAAGATTTGGATT+TGG | + | chr4_1:9582972-9582991 | Msa0534230:intron | 30.0% | |
| !! | GTACTTATGTTTTGTTGTAG+AGG | + | chr4_1:9583000-9583019 | Msa0534230:intron | 30.0% |
| ! | GTTAATTTTGCAAAGTTGGA+TGG | + | chr4_1:9583185-9583204 | Msa0534230:intron | 30.0% |
| ! | CCTTTGCATTTCTTTTATCA+TGG | - | chr4_1:9583363-9583382 | None:intergenic | 30.0% |
| CCATGATAAAAGAAATGCAA+AGG | + | chr4_1:9583360-9583379 | Msa0534230:intron | 30.0% | |
| TAAAAGAAATGCAAAGGAAG+AGG | + | chr4_1:9583366-9583385 | Msa0534230:intron | 30.0% | |
| AAATGGTACCAAACAAAAAG+CGG | - | chr4_1:9583512-9583531 | None:intergenic | 30.0% | |
| TATTGAAGGTCATGTGTAAA+TGG | - | chr4_1:9583529-9583548 | None:intergenic | 30.0% | |
| TACACATGACCTTCAATATT+AGG | + | chr4_1:9583531-9583550 | Msa0534230:intron | 30.0% | |
| !!! | ATCTATATTGGTTTTCCTTC+TGG | + | chr4_1:9583804-9583823 | Msa0534230:intron | 30.0% |
| ! | TCTAGATTTTGTGTTAGTCA+AGG | + | chr4_1:9583832-9583851 | Msa0534230:intron | 30.0% |
| ATTCCAATATGGTTCGTAAT+TGG | + | chr4_1:9583866-9583885 | Msa0534230:intron | 30.0% | |
| ATACCAATTACGAACCATAT+TGG | - | chr4_1:9583872-9583891 | None:intergenic | 30.0% | |
| ! | ATATTCTTTTGCGACTGTTA+TGG | + | chr4_1:9583910-9583929 | Msa0534230:intron | 30.0% |
| !!! | GGAGTATTTTTTTGTTCCTT+TGG | + | chr4_1:9583931-9583950 | Msa0534230:intron | 30.0% |
| !!! | TGTTTTTTTCCTGTCATTTC+TGG | + | chr4_1:9583969-9583988 | Msa0534230:intron | 30.0% |
| ACATAAAAACCAGAAATGAC+AGG | - | chr4_1:9583981-9584000 | None:intergenic | 30.0% | |
| GTGTGTTATCTTCATAAGTT+TGG | + | chr4_1:9584076-9584095 | Msa0534230:intron | 30.0% | |
| ATTTGCATCGAAACAATGAA+TGG | - | chr4_1:9584128-9584147 | None:intergenic | 30.0% | |
| CAATTAGCATCCTCAATAAA+AGG | - | chr4_1:9584602-9584621 | None:intergenic | 30.0% | |
| ! | ATTGATGCAAGGTTTAGTTT+AGG | + | chr4_1:9584618-9584637 | Msa0534230:intron | 30.0% |
| AGTTTAGGTAGAAAGAAAAG+GGG | + | chr4_1:9584633-9584652 | Msa0534230:intron | 30.0% | |
| TATGAAAATGTGGTTGGAAA+AGG | + | chr4_1:9584795-9584814 | Msa0534230:intron | 30.0% | |
| !! | TCTAAGAGTATTGTATTGGT+AGG | - | chr4_1:9584930-9584949 | None:intergenic | 30.0% |
| ! | TCACAATTGAAGTGTTTCTT+TGG | - | chr4_1:9585179-9585198 | None:intergenic | 30.0% |
| ATGCAATCAATGGTAAACTT+TGG | + | chr4_1:9585422-9585441 | Msa0534230:intron | 30.0% | |
| TGCAATCAATGGTAAACTTT+GGG | + | chr4_1:9585423-9585442 | Msa0534230:intron | 30.0% | |
| !!! | TTTTTTTTAGCAGTGAAAGC+GGG | - | chr4_1:9585460-9585479 | None:intergenic | 30.0% |
| !!! | GACATTTTGATTTTTCGCAA+TGG | - | chr4_1:9585535-9585554 | None:intergenic | 30.0% |
| GTAGACTGCTTATATAGATA+AGG | + | chr4_1:9585727-9585746 | Msa0534230:intron | 30.0% | |
| ! | AAATTTTATTCATCGACGAG+AGG | + | chr4_1:9585981-9586000 | Msa0534230:intron | 30.0% |
| ! | AATTTTATTCATCGACGAGA+GGG | + | chr4_1:9585982-9586001 | Msa0534230:intron | 30.0% |
| AAAGCGAGACAAAAATAATG+AGG | + | chr4_1:9586062-9586081 | Msa0534230:intron | 30.0% | |
| ATACAAATAACAGGAACTTG+TGG | - | chr4_1:9586223-9586242 | None:intergenic | 30.0% | |
| ! | CAAGTTCCTGTTATTTGTAT+AGG | + | chr4_1:9586223-9586242 | Msa0534230:intron | 30.0% |
| AGGAAACCTATACAAATAAC+AGG | - | chr4_1:9586232-9586251 | None:intergenic | 30.0% | |
| TTATTTGTATAGGTTTCCTC+TGG | + | chr4_1:9586233-9586252 | Msa0534230:intron | 30.0% | |
| TAGTTCGATGAATATTTGCA+TGG | - | chr4_1:9586299-9586318 | None:intergenic | 30.0% | |
| TAATCACTTGAAATGGAATG+AGG | - | chr4_1:9586350-9586369 | None:intergenic | 30.0% | |
| TGTGTGTCAAAACAATATGA+CGG | - | chr4_1:9586504-9586523 | None:intergenic | 30.0% | |
| TTATTCAGGTCATTTCATCA+AGG | - | chr4_1:9586570-9586589 | None:intergenic | 30.0% | |
| AATGACCTGAATAATGACTA+TGG | + | chr4_1:9586576-9586595 | Msa0534230:intron | 30.0% | |
| ATGAACCATAGTCATTATTC+AGG | - | chr4_1:9586584-9586603 | None:intergenic | 30.0% | |
| CTAATCTCTCGAAATGAATT+TGG | + | chr4_1:9586608-9586627 | Msa0534230:intron | 30.0% | |
| TGGTAATAATAGGGGAAAAA+AGG | - | chr4_1:9586757-9586776 | None:intergenic | 30.0% | |
| ! | TTAGTGTGTAGATTTTGCTT+TGG | - | chr4_1:9586863-9586882 | None:intergenic | 30.0% |
| GAAGATATGATGTTGCAATT+TGG | + | chr4_1:9586887-9586906 | Msa0534230:intron | 30.0% | |
| TTACTCAACATCAAGACAAA+AGG | - | chr4_1:9587236-9587255 | None:intergenic | 30.0% | |
| ATTTACGAACTAAAAACCGA+AGG | - | chr4_1:9587297-9587316 | None:intergenic | 30.0% | |
| AATAGTGTAGAGAAAATGGT+TGG | + | chr4_1:9587347-9587366 | Msa0534230:intron | 30.0% | |
| CACTTTATATACACAGGAAT+CGG | + | chr4_1:9587705-9587724 | Msa0534230:intron | 30.0% | |
| CTATCAACATATGGATATTC+AGG | - | chr4_1:9587750-9587769 | None:intergenic | 30.0% | |
| CTTATTTCGCTATCAACATA+TGG | - | chr4_1:9587759-9587778 | None:intergenic | 30.0% | |
| GGATTTAGATATTCATGTCA+AGG | - | chr4_1:9587899-9587918 | None:intergenic | 30.0% | |
| CATGAATATCTAAATCCTCA+AGG | + | chr4_1:9587902-9587921 | Msa0534230:intron | 30.0% | |
| ACAAAGATATATGATGACCA+AGG | - | chr4_1:9587975-9587994 | None:intergenic | 30.0% | |
| AGAGAAAGAGATGAAAGAGA+GGG | + | chr4_1:9577400-9577419 | Msa0534230:exon | 35.0% | |
| AGGGGAAAATAACAATGAAG+AGG | - | chr4_1:9577523-9577542 | None:intergenic | 35.0% | |
| CCTATTCCAATTACCAATAG+AGG | - | chr4_1:9577676-9577695 | None:intergenic | 35.0% | |
| ! | CCTCTATTGGTAATTGGAAT+AGG | + | chr4_1:9577673-9577692 | Msa0534230:intron | 35.0% |
| ! | AATCTAAAGTGATCCTCTTC+AGG | + | chr4_1:9577712-9577731 | Msa0534230:intron | 35.0% |
| !! | CTTGATGTTGATTGCTTTTC+TGG | + | chr4_1:9577909-9577928 | Msa0534230:intron | 35.0% |
| ! | CTTTTCTGGGTTATCAGTTT+TGG | + | chr4_1:9577923-9577942 | Msa0534230:intron | 35.0% |
| ! | TATCCTCAATGGTAATGATG+AGG | - | chr4_1:9578723-9578742 | None:intergenic | 35.0% |
| ! | GGAAGTATATACATGGCTTT+AGG | - | chr4_1:9578746-9578765 | None:intergenic | 35.0% |
| ATTAAAGATGGAGTTTCCAG+AGG | - | chr4_1:9578843-9578862 | None:intergenic | 35.0% | |
| ! | AGTCTACTCAAGTTGTTCAA+GGG | - | chr4_1:9578892-9578911 | None:intergenic | 35.0% |
| GAGATTCACAATGATGCTAA+TGG | - | chr4_1:9579004-9579023 | None:intergenic | 35.0% | |
| GTCAAAGAGCAAAATCATCT+TGG | - | chr4_1:9579089-9579108 | None:intergenic | 35.0% | |
| ! | ATTTTGGATAACGAAGATGG+TGG | - | chr4_1:9579113-9579132 | None:intergenic | 35.0% |
| CAGAGAGTTAGAAACTCATT+TGG | - | chr4_1:9579141-9579160 | None:intergenic | 35.0% | |
| CAAATGAGTTTCTAACTCTC+TGG | + | chr4_1:9579139-9579158 | Msa0534230:intron | 35.0% | |
| ! | GGATGTACTAAAAGCATAGT+GGG | + | chr4_1:9579239-9579258 | Msa0534230:intron | 35.0% |
| GGTTCTGCTTCTATAAGTTT+AGG | + | chr4_1:9579260-9579279 | Msa0534230:intron | 35.0% | |
| ! | GCTTATAGAGTTGTTGATGA+AGG | + | chr4_1:9579407-9579426 | Msa0534230:CDS | 35.0% |
| ! | TAGAGTTGTTGATGAAGGTT+AGG | + | chr4_1:9579412-9579431 | Msa0534230:intron | 35.0% |
| TTCCAATGCTCAATGTTGTT+TGG | + | chr4_1:9579906-9579925 | Msa0534230:intron | 35.0% | |
| AACCAAACAACATTGAGCAT+TGG | - | chr4_1:9579911-9579930 | None:intergenic | 35.0% | |
| !! | ACAAGATATTTTTGTGGCCT+TGG | + | chr4_1:9580039-9580058 | Msa0534230:intron | 35.0% |
| ! | ATGTATTGAGGTTTGGTTGA+TGG | + | chr4_1:9580120-9580139 | Msa0534230:intron | 35.0% |
| ! | GTTGATGGATAATGTGACAA+AGG | + | chr4_1:9580135-9580154 | Msa0534230:intron | 35.0% |
| AAGGAGATGAGAAAGAAACT+AGG | + | chr4_1:9580154-9580173 | Msa0534230:intron | 35.0% | |
| ! | AGCAATTGATAGCAGAATTG+AGG | + | chr4_1:9580356-9580375 | Msa0534230:intron | 35.0% |
| AAAGCAAGTGGTCAAATTTC+TGG | - | chr4_1:9580403-9580422 | None:intergenic | 35.0% | |
| !! | ACCACTTGCTTTTATGGAAA+TGG | + | chr4_1:9580411-9580430 | Msa0534230:intron | 35.0% |
| ACCATTTCCATAAAAGCAAG+TGG | - | chr4_1:9580415-9580434 | None:intergenic | 35.0% | |
| AGCTGCAAAACAAAATTGTG+AGG | - | chr4_1:9580693-9580712 | None:intergenic | 35.0% | |
| AGGTAGGAATTACAATTTCC+TGG | - | chr4_1:9580792-9580811 | None:intergenic | 35.0% | |
| !!! | ATTTGGTGTCTCTTTTTCCA+TGG | + | chr4_1:9581218-9581237 | Msa0534230:intron | 35.0% |
| ! | AAAGAGATTGATTCAGCTGA+TGG | - | chr4_1:9581315-9581334 | None:intergenic | 35.0% |
| !!! | GTATACGTGTTTGTTTTTGC+AGG | + | chr4_1:9581478-9581497 | Msa0534230:intron | 35.0% |
| TTGGCCAATGGATCAAAATA+AGG | - | chr4_1:9581527-9581546 | None:intergenic | 35.0% | |
| ACTTCACCTGGTTTAGTAAT+TGG | - | chr4_1:9581546-9581565 | None:intergenic | 35.0% | |
| ! | ATAGGGTATTTAACTTCACC+TGG | - | chr4_1:9581558-9581577 | None:intergenic | 35.0% |
| ! | AATTTGATATGAAGGGTGTG+TGG | + | chr4_1:9581598-9581617 | Msa0534230:CDS | 35.0% |
| ! | GAAAAGCATAAGAGAGAGAT+TGG | + | chr4_1:9582154-9582173 | Msa0534230:intron | 35.0% |
| AAAGCATAAGAGAGAGATTG+GGG | + | chr4_1:9582156-9582175 | Msa0534230:intron | 35.0% | |
| TAAAATCATATGACCAGAGG+GGG | - | chr4_1:9582255-9582274 | None:intergenic | 35.0% | |
| ! | TATTTTCCTTTGTCGTGGAA+TGG | + | chr4_1:9582313-9582332 | Msa0534230:intron | 35.0% |
| ! | ATTTTCCTTTGTCGTGGAAT+GGG | + | chr4_1:9582314-9582333 | Msa0534230:intron | 35.0% |
| GCAAAAACTCTTCACATTAC+TGG | + | chr4_1:9582392-9582411 | Msa0534230:intron | 35.0% | |
| CATGATGTTAAATAGTGGTG+TGG | - | chr4_1:9582705-9582724 | None:intergenic | 35.0% | |
| CTTGATGTTAAACAGTGATG+TGG | - | chr4_1:9582854-9582873 | None:intergenic | 35.0% | |
| AAACGTGTGCCAAAATACAT+TGG | + | chr4_1:9582901-9582920 | Msa0534230:intron | 35.0% | |
| TACATTGGACGTTTATCCAA+AGG | + | chr4_1:9582916-9582935 | Msa0534230:intron | 35.0% | |
| AGCAGAGTCTTAGAAAGATT+TGG | + | chr4_1:9582966-9582985 | Msa0534230:intron | 35.0% | |
| AATTTCTCTATCATGTGTCC+TGG | + | chr4_1:9583076-9583095 | Msa0534230:intron | 35.0% | |
| TCAAGACAAGAAACCCATAA+GGG | - | chr4_1:9583224-9583243 | None:intergenic | 35.0% | |
| TTCAAGACAAGAAACCCATA+AGG | - | chr4_1:9583225-9583244 | None:intergenic | 35.0% | |
| ACATCTTCCATCAAGTAACA+GGG | - | chr4_1:9583300-9583319 | None:intergenic | 35.0% | |
| TACATCTTCCATCAAGTAAC+AGG | - | chr4_1:9583301-9583320 | None:intergenic | 35.0% | |
| AAGAGCAATTCTTCAAGGAA+CGG | + | chr4_1:9583326-9583345 | Msa0534230:intron | 35.0% | |
| !!! | TATTGGTTTTCCTTCTGGTA+TGG | + | chr4_1:9583809-9583828 | Msa0534230:intron | 35.0% |
| AAAATCTAGACCATACCAGA+AGG | - | chr4_1:9583822-9583841 | None:intergenic | 35.0% | |
| TGGACACAGTTATTATGTTG+TGG | + | chr4_1:9584006-9584025 | Msa0534230:intron | 35.0% | |
| !! | CTATGCTTAAATTTTGGTGG+AGG | - | chr4_1:9584219-9584238 | None:intergenic | 35.0% |
| ! | GGACTATGCTTAAATTTTGG+TGG | - | chr4_1:9584222-9584241 | None:intergenic | 35.0% |
| ! | GGAGGACTATGCTTAAATTT+TGG | - | chr4_1:9584225-9584244 | None:intergenic | 35.0% |
| TTCATGTTCAACATCAAAGG+AGG | - | chr4_1:9584243-9584262 | None:intergenic | 35.0% | |
| CAGTTCATGTTCAACATCAA+AGG | - | chr4_1:9584246-9584265 | None:intergenic | 35.0% | |
| TTGATGTTGAACATGAACTG+AGG | + | chr4_1:9584246-9584265 | Msa0534230:intron | 35.0% | |
| TGATGTTGAACATGAACTGA+GGG | + | chr4_1:9584247-9584266 | Msa0534230:intron | 35.0% | |
| TTCACACTCTTAGTACTCTT+CGG | - | chr4_1:9584406-9584425 | None:intergenic | 35.0% | |
| TTGGAAAGGAACCAAATGAT+AGG | + | chr4_1:9584467-9584486 | Msa0534230:intron | 35.0% | |
| !! | TTAATTGGTGACCTTTTGTG+AGG | + | chr4_1:9584557-9584576 | Msa0534230:intron | 35.0% |
| ! | GAAGTGATTGCCTTTTATTG+AGG | + | chr4_1:9584589-9584608 | Msa0534230:intron | 35.0% |
| TGATTAACAAGTTATGAGCG+TGG | + | chr4_1:9584686-9584705 | Msa0534230:intron | 35.0% | |
| AGGAGCTATTGATCTGTTTA+AGG | + | chr4_1:9584815-9584834 | Msa0534230:intron | 35.0% | |
| GACATTGTCTGACAAAGATT+TGG | + | chr4_1:9584868-9584887 | Msa0534230:intron | 35.0% | |
| TTCTTTACTACTTACAGCTC+AGG | - | chr4_1:9584987-9585006 | None:intergenic | 35.0% | |
| !!! | TTTTCTGCATTCAAGTTGAG+TGG | + | chr4_1:9585093-9585112 | Msa0534230:intron | 35.0% |
| ATGTCAAAGAGTTTCCTTTG+CGG | + | chr4_1:9585140-9585159 | Msa0534230:intron | 35.0% | |
| GAAAGTGAGAAGAGAGAAAT+AGG | - | chr4_1:9585350-9585369 | None:intergenic | 35.0% | |
| GATTGCATACTTTGACTCTA+CGG | - | chr4_1:9585410-9585429 | None:intergenic | 35.0% | |
| GAGTCAAAGTATGCAATCAA+TGG | + | chr4_1:9585412-9585431 | Msa0534230:intron | 35.0% | |
| TTATGAACGAATTAGCTCCT+TGG | - | chr4_1:9585703-9585722 | None:intergenic | 35.0% | |
| GACTGCTTATATAGATAAGG+CGG | + | chr4_1:9585730-9585749 | Msa0534230:intron | 35.0% | |
| CTTTACCATGTTGCATATGT+CGG | - | chr4_1:9586088-9586107 | None:intergenic | 35.0% | |
| TTCGAGGCATATTATTCACA+TGG | + | chr4_1:9586445-9586464 | Msa0534230:intron | 35.0% | |
| TCGAGGCATATTATTCACAT+GGG | + | chr4_1:9586446-9586465 | Msa0534230:intron | 35.0% | |
| ! | TCGAAATGAATTTGGTTCCA+GGG | + | chr4_1:9586616-9586635 | Msa0534230:intron | 35.0% |
| TAAAATGCATGGAACAAGTG+TGG | + | chr4_1:9587044-9587063 | Msa0534230:intron | 35.0% | |
| GAAGTGAAATCACAATCCTT+CGG | + | chr4_1:9587278-9587297 | Msa0534230:intron | 35.0% | |
| AGTCACCACTTTATATACAC+AGG | + | chr4_1:9587699-9587718 | Msa0534230:intron | 35.0% | |
| CGATTCCTGTGTATATAAAG+TGG | - | chr4_1:9587707-9587726 | None:intergenic | 35.0% | |
| TTAGCATTAGCATTACTGAC+AGG | + | chr4_1:9587789-9587808 | Msa0534230:intron | 35.0% | |
| !! | TGAATGGAGAATTCAAGTTG+TGG | + | chr4_1:9587826-9587845 | Msa0534230:intron | 35.0% |
| CAAGTGACATAGAAAAACCT+TGG | + | chr4_1:9587955-9587974 | Msa0534230:intron | 35.0% | |
| GAGAGAAAGAGATGAAAGAG+AGG | + | chr4_1:9577399-9577418 | Msa0534230:exon | 40.0% | |
| GAGAAAGAGATGAAAGAGAG+GGG | + | chr4_1:9577401-9577420 | Msa0534230:exon | 40.0% | |
| AGAAAGAGATGAAAGAGAGG+GGG | + | chr4_1:9577402-9577421 | Msa0534230:exon | 40.0% | |
| AGGATACCTCTGATGCAAAT+CGG | - | chr4_1:9577503-9577522 | None:intergenic | 40.0% | |
| AAGTCATGCATGTCCTCTAT+TGG | + | chr4_1:9577660-9577679 | Msa0534230:intron | 40.0% | |
| ! | GCATGTCCTCTATTGGTAAT+TGG | + | chr4_1:9577667-9577686 | Msa0534230:intron | 40.0% |
| !! | TTTGGTTCTGTTTGTGATGC+AGG | + | chr4_1:9577941-9577960 | Msa0534230:intron | 40.0% |
| !! | TTGGTTCTGTTTGTGATGCA+GGG | + | chr4_1:9577942-9577961 | Msa0534230:intron | 40.0% |
| TGACCTCATCATTACCATTG+AGG | + | chr4_1:9578717-9578736 | Msa0534230:intron | 40.0% | |
| !! | ATGGCTTTAGGTATCCTCAA+TGG | - | chr4_1:9578734-9578753 | None:intergenic | 40.0% |
| ! | GAGTCTACTCAAGTTGTTCA+AGG | - | chr4_1:9578893-9578912 | None:intergenic | 40.0% |
| CTACTAATGTCGCGGAAATT+AGG | - | chr4_1:9578976-9578995 | None:intergenic | 40.0% | |
| TGAGTCCTTCTGATGTTACT+TGG | + | chr4_1:9579217-9579236 | Msa0534230:intron | 40.0% | |
| ! | GAGTCCTTCTGATGTTACTT+GGG | + | chr4_1:9579218-9579237 | Msa0534230:intron | 40.0% |
| ACATCCCAAGTAACATCAGA+AGG | - | chr4_1:9579225-9579244 | None:intergenic | 40.0% | |
| ! | GGGATGTACTAAAAGCATAG+TGG | + | chr4_1:9579238-9579257 | Msa0534230:intron | 40.0% |
| ! | GTTGATGAAGGTTAGGAATG+AGG | + | chr4_1:9579419-9579438 | Msa0534230:intron | 40.0% |
| GGAGTAGAGAAAGTTGAAGA+AGG | + | chr4_1:9579609-9579628 | Msa0534230:CDS | 40.0% | |
| TGCGCCTCTTCAAAATTGAT+TGG | + | chr4_1:9579931-9579950 | Msa0534230:intron | 40.0% | |
| AAAAAGCTATATCTGCGCCA+AGG | - | chr4_1:9580059-9580078 | None:intergenic | 40.0% | |
| TCAGAAATTGTTGGATGCAG+TGG | + | chr4_1:9580267-9580286 | Msa0534230:intron | 40.0% | |
| ! | TGCAGTGGTTTGAAATAAGC+AGG | + | chr4_1:9580282-9580301 | Msa0534230:intron | 40.0% |
| ATTGGTTGAGATCTGACAGA+AGG | + | chr4_1:9580443-9580462 | Msa0534230:CDS | 40.0% | |
| TTGGTTGAGATCTGACAGAA+GGG | + | chr4_1:9580444-9580463 | Msa0534230:CDS | 40.0% | |
| CTGGTCAATAGATGGATGAT+TGG | + | chr4_1:9580629-9580648 | Msa0534230:intron | 40.0% | |
| GCATTGTTGATCACACTTTC+TGG | + | chr4_1:9580759-9580778 | Msa0534230:intron | 40.0% | |
| TTGTTGATCACACTTTCTGG+TGG | + | chr4_1:9580762-9580781 | Msa0534230:intron | 40.0% | |
| TTCTAGATCAGATGCCTCAA+AGG | - | chr4_1:9580812-9580831 | None:intergenic | 40.0% | |
| GTTGCAACGGATATATGACA+AGG | - | chr4_1:9580926-9580945 | None:intergenic | 40.0% | |
| ! | ATTGATTCAGCTGATGGTGA+GGG | - | chr4_1:9581309-9581328 | None:intergenic | 40.0% |
| CTTAGAGATTTCTGCAGAGT+AGG | - | chr4_1:9581386-9581405 | None:intergenic | 40.0% | |
| CTACTCTGCAGAAATCTCTA+AGG | + | chr4_1:9581384-9581403 | Msa0534230:intron | 40.0% | |
| CTGGTTTAGTAATTGGCCAA+TGG | - | chr4_1:9581539-9581558 | None:intergenic | 40.0% | |
| CATTGGCCAATTACTAAACC+AGG | + | chr4_1:9581537-9581556 | Msa0534230:CDS | 40.0% | |
| TTAGTGTCTATCGCTGAGTA+TGG | + | chr4_1:9581859-9581878 | Msa0534230:intron | 40.0% | |
| TTTCCACACTCAATGGTTGA+TGG | - | chr4_1:9582207-9582226 | None:intergenic | 40.0% | |
| ACCATTGAGTGTGGAAAAAG+AGG | + | chr4_1:9582210-9582229 | Msa0534230:intron | 40.0% | |
| ! | ACCTCTTTTTCCACACTCAA+TGG | - | chr4_1:9582214-9582233 | None:intergenic | 40.0% |
| ! | TCCTCTATTTTCCTTTGTCG+TGG | + | chr4_1:9582308-9582327 | Msa0534230:intron | 40.0% |
| TCCACGACAAAGGAAAATAG+AGG | - | chr4_1:9582312-9582331 | None:intergenic | 40.0% | |
| ! | TGTTTTCGCACACAGTTAAG+CGG | + | chr4_1:9582503-9582522 | Msa0534230:intron | 40.0% |
| GCATTGGAAAACAACACCTT+TGG | - | chr4_1:9582935-9582954 | None:intergenic | 40.0% | |
| CCATCAAGTAACAGGGAAAA+TGG | - | chr4_1:9583293-9583312 | None:intergenic | 40.0% | |
| !! | CCATTTTCCCTGTTACTTGA+TGG | + | chr4_1:9583290-9583309 | Msa0534230:intron | 40.0% |
| TGAGCAAGAGCAATTCTTCA+AGG | + | chr4_1:9583321-9583340 | Msa0534230:intron | 40.0% | |
| ! | CAAAGGAAGAGGATTTTGAG+AGG | + | chr4_1:9583377-9583396 | Msa0534230:intron | 40.0% |
| AAGGTGAAGAAGACAACTAC+TGG | + | chr4_1:9583421-9583440 | Msa0534230:intron | 40.0% | |
| AAAAGCGGTGAATTGGAGTT+TGG | - | chr4_1:9583497-9583516 | None:intergenic | 40.0% | |
| CCAAACAAAAAGCGGTGAAT+TGG | - | chr4_1:9583504-9583523 | None:intergenic | 40.0% | |
| !!! | CCAATTCACCGCTTTTTGTT+TGG | + | chr4_1:9583501-9583520 | Msa0534230:intron | 40.0% |
| ! | CGTTTTTCCTTTTCCACGAA+AGG | + | chr4_1:9583713-9583732 | Msa0534230:intron | 40.0% |
| !!! | TGCTGCTGTTCTGTTTTGAT+AGG | + | chr4_1:9584029-9584048 | Msa0534230:intron | 40.0% |
| !! | GGAGGAAGCATTAGTGTTAA+TGG | - | chr4_1:9584201-9584220 | None:intergenic | 40.0% |
| AGGGTGATTGAGGTAATGAA+GGG | + | chr4_1:9584266-9584285 | Msa0534230:intron | 40.0% | |
| TGAGGTAATGAAGGGACTAA+TGG | + | chr4_1:9584274-9584293 | Msa0534230:intron | 40.0% | |
| !!! | GAAGGGACTAATGGTTTTGT+TGG | + | chr4_1:9584283-9584302 | Msa0534230:intron | 40.0% |
| AGGTGATTGAGCTAAAGTAC+TGG | + | chr4_1:9584366-9584385 | Msa0534230:intron | 40.0% | |
| ! | TGACCTTTTGTGAGGAATGA+GGG | + | chr4_1:9584565-9584584 | Msa0534230:intron | 40.0% |
| TGAGGATGCTAATTGATGCA+AGG | + | chr4_1:9584607-9584626 | Msa0534230:intron | 40.0% | |
| TTGAGTGGCACTACAATATG+TGG | + | chr4_1:9585108-9585127 | Msa0534230:intron | 40.0% | |
| CATAGATTGATCCATCACCA+AGG | + | chr4_1:9585683-9585702 | Msa0534230:intron | 40.0% | |
| TGTGCTATAATGTTGAGCCA+AGG | - | chr4_1:9585761-9585780 | None:intergenic | 40.0% | |
| AAAGAAACACCAACAACTCG+TGG | + | chr4_1:9586007-9586026 | Msa0534230:intron | 40.0% | |
| AAGAAACACCAACAACTCGT+GGG | + | chr4_1:9586008-9586027 | Msa0534230:intron | 40.0% | |
| GAGCTAAAGGAAACAACAAC+AGG | + | chr4_1:9586033-9586052 | Msa0534230:intron | 40.0% | |
| ! | CGATTTATTTGAGGCGTAGA+GGG | - | chr4_1:9586273-9586292 | None:intergenic | 40.0% |
| GTCTTTGCTGCAGAAATGTA+TGG | + | chr4_1:9586478-9586497 | Msa0534230:intron | 40.0% | |
| ! | CTCGAAATGAATTTGGTTCC+AGG | + | chr4_1:9586615-9586634 | Msa0534230:intron | 40.0% |
| ! | CGAAATGAATTTGGTTCCAG+GGG | + | chr4_1:9586617-9586636 | Msa0534230:intron | 40.0% |
| ! | GTCGTCCAATACTTTTCACA+TGG | + | chr4_1:9586919-9586938 | Msa0534230:intron | 40.0% |
| AAGAAAGGAGTGGATCATTG+AGG | - | chr4_1:9587524-9587543 | None:intergenic | 40.0% | |
| ! | TCATGTCAAGGCCTTTTAGA+GGG | - | chr4_1:9587887-9587906 | None:intergenic | 40.0% |
| ! | TTCATGTCAAGGCCTTTTAG+AGG | - | chr4_1:9587888-9587907 | None:intergenic | 40.0% |
| GTTCAAAGCTTGATTCCTTG+AGG | - | chr4_1:9587920-9587939 | None:intergenic | 40.0% | |
| ! | TCACTTGTGAGTTGAGATAG+TGG | - | chr4_1:9587942-9587961 | None:intergenic | 40.0% |
| AGAGGGACGAAAGAGAGAAA+GGG | + | chr4_1:9577437-9577456 | Msa0534230:CDS | 45.0% | |
| TGATGCAAATCGGTGCAGAT+CGG | - | chr4_1:9577493-9577512 | None:intergenic | 45.0% | |
| AGAAACGCGTACAGAACAGA+GGG | - | chr4_1:9577548-9577567 | None:intergenic | 45.0% | |
| ! | TGGTGAGTTGAAGGAGGAAA+GGG | - | chr4_1:9577571-9577590 | None:intergenic | 45.0% |
| TGTTTGTGATGCAGGGATTG+TGG | + | chr4_1:9577949-9577968 | Msa0534230:intron | 45.0% | |
| ! | GCTTGGTTGATTTCTTCCTC+TGG | + | chr4_1:9578824-9578843 | Msa0534230:intron | 45.0% |
| !! | TGGTGTTGCTACTAATGTCG+CGG | - | chr4_1:9578984-9579003 | None:intergenic | 45.0% |
| AGCTTCTATTCTTTGGGTGC+AGG | + | chr4_1:9579741-9579760 | Msa0534230:intron | 45.0% | |
| TGGAAATGGTTGCTGCAGAT+TGG | + | chr4_1:9580425-9580444 | Msa0534230:intron | 45.0% | |
| GACAGAAGGGAAGATGATCT+TGG | + | chr4_1:9580457-9580476 | Msa0534230:CDS | 45.0% | |
| AGAAGGGAAGATGATCTTGG+TGG | + | chr4_1:9580460-9580479 | Msa0534230:CDS | 45.0% | |
| ! | AGCATTGTGCAGGTTGACTT+TGG | + | chr4_1:9580493-9580512 | Msa0534230:intron | 45.0% |
| !!! | GCAGGTTGACTTTGGTGTTT+TGG | + | chr4_1:9580501-9580520 | Msa0534230:intron | 45.0% |
| AGATCAGATGCCTCAAAGGT+AGG | - | chr4_1:9580808-9580827 | None:intergenic | 45.0% | |
| CTGTGACTCGAAAGTTGCAA+CGG | - | chr4_1:9580939-9580958 | None:intergenic | 45.0% | |
| ! | AACTTTCGAGTCACAGACAC+TGG | + | chr4_1:9580943-9580962 | Msa0534230:intron | 45.0% |
| AGCTGCTTGCAATCTCTCTA+TGG | + | chr4_1:9581266-9581285 | Msa0534230:intron | 45.0% | |
| ! | GATTGATTCAGCTGATGGTG+AGG | - | chr4_1:9581310-9581329 | None:intergenic | 45.0% |
| TCAGGCAAGTGGCTAGAAAA+AGG | - | chr4_1:9582070-9582089 | None:intergenic | 45.0% | |
| GAAACAGAAGATCAGGCAAG+TGG | - | chr4_1:9582081-9582100 | None:intergenic | 45.0% | |
| ! | TTTTCAGACATCAGACGCAG+AGG | - | chr4_1:9582103-9582122 | None:intergenic | 45.0% |
| ACTCCATCAACCATTGAGTG+TGG | + | chr4_1:9582201-9582220 | Msa0534230:intron | 45.0% | |
| TCAAACCCATTCCACGACAA+AGG | - | chr4_1:9582322-9582341 | None:intergenic | 45.0% | |
| CCATCCACATTCTCCCTTAT+GGG | + | chr4_1:9583208-9583227 | Msa0534230:intron | 45.0% | |
| GAAACCCATAAGGGAGAATG+TGG | - | chr4_1:9583215-9583234 | None:intergenic | 45.0% | |
| TACTGGTCCCACTAATGCAA+AGG | + | chr4_1:9583438-9583457 | Msa0534230:intron | 45.0% | |
| CGTTCCTCCTTTGCATTAGT+GGG | - | chr4_1:9583448-9583467 | None:intergenic | 45.0% | |
| CCACTAATGCAAAGGAGGAA+CGG | + | chr4_1:9583446-9583465 | Msa0534230:intron | 45.0% | |
| ! | TCCTTTTCCACGAAAGGTTG+AGG | + | chr4_1:9583719-9583738 | Msa0534230:intron | 45.0% |
| TCCTCAACCTTTCGTGGAAA+AGG | - | chr4_1:9583723-9583742 | None:intergenic | 45.0% | |
| !!! | GTTCCTTTGGGGCAGTTTTT+CGG | + | chr4_1:9583944-9583963 | Msa0534230:intron | 45.0% |
| !!! | TTCCTTTGGGGCAGTTTTTC+GGG | + | chr4_1:9583945-9583964 | Msa0534230:intron | 45.0% |
| ACATGAACTGAGGGTGATTG+AGG | + | chr4_1:9584256-9584275 | Msa0534230:intron | 45.0% | |
| GAGGGTGATTGAGGTAATGA+AGG | + | chr4_1:9584265-9584284 | Msa0534230:intron | 45.0% | |
| ! | GTGACCTTTTGTGAGGAATG+AGG | + | chr4_1:9584564-9584583 | Msa0534230:intron | 45.0% |
| TCTCCCTCATTCCTCACAAA+AGG | - | chr4_1:9584571-9584590 | None:intergenic | 45.0% | |
| TCCTTTGCGGATCAGTTCTT+AGG | + | chr4_1:9585153-9585172 | Msa0534230:intron | 45.0% | |
| CACAACCAAACACACCCTAA+TGG | + | chr4_1:9585374-9585393 | Msa0534230:intron | 45.0% | |
| ACGGAACAATGCGTCCATTA+GGG | - | chr4_1:9585391-9585410 | None:intergenic | 45.0% | |
| TACGGAACAATGCGTCCATT+AGG | - | chr4_1:9585392-9585411 | None:intergenic | 45.0% | |
| TGCTTCTTTCCTCTGCTGTA+AGG | + | chr4_1:9585501-9585520 | Msa0534230:intron | 45.0% | |
| ACGAATTAGCTCCTTGGTGA+TGG | - | chr4_1:9585697-9585716 | None:intergenic | 45.0% | |
| GGTAAAGCAAAACCACAGCT+CGG | + | chr4_1:9586101-9586120 | Msa0534230:intron | 45.0% | |
| ! | GCGATTTATTTGAGGCGTAG+AGG | - | chr4_1:9586274-9586293 | None:intergenic | 45.0% |
| GCATGGCTGCGATTTATTTG+AGG | - | chr4_1:9586282-9586301 | None:intergenic | 45.0% | |
| TCATGTCACACACTGTCATG+TGG | - | chr4_1:9586547-9586566 | None:intergenic | 45.0% | |
| !! | TTGCTTTTATGGCAAACCCC+TGG | - | chr4_1:9586636-9586655 | None:intergenic | 45.0% |
| ATACCCAGAGCTGTGAAAAG+CGG | - | chr4_1:9587408-9587427 | None:intergenic | 45.0% | |
| AGTGGATCATTGAGGTGGAA+AGG | - | chr4_1:9587516-9587535 | None:intergenic | 45.0% | |
| AAAGGAGTGGATCATTGAGG+TGG | - | chr4_1:9587521-9587540 | None:intergenic | 45.0% | |
| !! | CCTTTTAGAGGGATGGTAAC+GGG | - | chr4_1:9587876-9587895 | None:intergenic | 45.0% |
| !! | GCCTTTTAGAGGGATGGTAA+CGG | - | chr4_1:9587877-9587896 | None:intergenic | 45.0% |
| GAGAGGGACGAAAGAGAGAA+AGG | + | chr4_1:9577436-9577455 | Msa0534230:CDS | 50.0% | |
| !! | TCTGCACCGATTTGCATCAG+AGG | + | chr4_1:9577494-9577513 | Msa0534230:CDS | 50.0% |
| GAGAAACGCGTACAGAACAG+AGG | - | chr4_1:9577549-9577568 | None:intergenic | 50.0% | |
| ! | GTGGTGAGTTGAAGGAGGAA+AGG | - | chr4_1:9577572-9577591 | None:intergenic | 50.0% |
| ! | ACCGCCGTCTACCAATTTTC+CGG | + | chr4_1:9577590-9577609 | Msa0534230:intron | 50.0% |
| ACGGAACAACAAATCGGAGC+CGG | - | chr4_1:9577616-9577635 | None:intergenic | 50.0% | |
| TCAACCTGCACAATGCTCCT+AGG | - | chr4_1:9580490-9580509 | None:intergenic | 50.0% | |
| ! | ACACTTTCTGGTGGCTATCC+AGG | + | chr4_1:9580771-9580790 | Msa0534230:intron | 50.0% |
| ! | GAAGGGTGTGTGGACATCAT+TGG | + | chr4_1:9581608-9581627 | Msa0534230:CDS | 50.0% |
| CGCAGAGGAAACAGAAGATC+AGG | - | chr4_1:9582088-9582107 | None:intergenic | 50.0% | |
| ! | GTTGATGGAGTGATCCGACA+CGG | - | chr4_1:9582192-9582211 | None:intergenic | 50.0% |
| TATTGCTCTTTGTCCCCCTC+TGG | + | chr4_1:9582239-9582258 | Msa0534230:intron | 50.0% | |
| GCCATCCACATTCTCCCTTA+TGG | + | chr4_1:9583207-9583226 | Msa0534230:intron | 50.0% | |
| CCCATAAGGGAGAATGTGGA+TGG | - | chr4_1:9583211-9583230 | None:intergenic | 50.0% | |
| !! | GGATTTTGAGAGGATGCAGC+AGG | + | chr4_1:9583387-9583406 | Msa0534230:intron | 50.0% |
| TGGTCCCACTAATGCAAAGG+AGG | + | chr4_1:9583441-9583460 | Msa0534230:intron | 50.0% | |
| CCGTTCCTCCTTTGCATTAG+TGG | - | chr4_1:9583449-9583468 | None:intergenic | 50.0% | |
| CTCGATTCCTCAACCTTTCG+TGG | - | chr4_1:9583729-9583748 | None:intergenic | 50.0% | |
| CACGAAAGGTTGAGGAATCG+AGG | + | chr4_1:9583727-9583746 | Msa0534230:intron | 50.0% | |
| GGTTGAGGAATCGAGGATCT+AGG | + | chr4_1:9583734-9583753 | Msa0534230:intron | 50.0% | |
| TGAGGAATCGAGGATCTAGG+TGG | + | chr4_1:9583737-9583756 | Msa0534230:intron | 50.0% | |
| AACCCGAAAAACTGCCCCAA+AGG | - | chr4_1:9583950-9583969 | None:intergenic | 50.0% | |
| !!! | GGTTTTGTTGGTGCTGTTGC+AGG | + | chr4_1:9584295-9584314 | Msa0534230:intron | 50.0% |
| ! | GCATGTTTTGTCGGGGCTTT+AGG | + | chr4_1:9584334-9584353 | Msa0534230:intron | 50.0% |
| TGAGCGTGGAGATTTGACAG+TGG | + | chr4_1:9584700-9584719 | Msa0534230:intron | 50.0% | |
| GCCTAAGAACTGATCCGCAA+AGG | - | chr4_1:9585157-9585176 | None:intergenic | 50.0% | |
| TGCGTCCATTAGGGTGTGTT+TGG | - | chr4_1:9585382-9585401 | None:intergenic | 50.0% | |
| ! | TAGATAAGGCGGAGCATCCT+TGG | + | chr4_1:9585741-9585760 | Msa0534230:intron | 50.0% |
| TAGCTCTTCCCACGAGTTGT+TGG | - | chr4_1:9586019-9586038 | None:intergenic | 50.0% | |
| CAACTCGTGGGAAGAGCTAA+AGG | + | chr4_1:9586020-9586039 | Msa0534230:intron | 50.0% | |
| TGAGGCCGACATATGCAACA+TGG | + | chr4_1:9586080-9586099 | Msa0534230:intron | 50.0% | |
| !! | TGGCTGCAGTTTGGTTCTTG+TGG | - | chr4_1:9586203-9586222 | None:intergenic | 50.0% |
| AGGAACTTGTGGCTGCAGTT+TGG | - | chr4_1:9586212-9586231 | None:intergenic | 50.0% | |
| GAGGCGTAGAGGGAAGAAAT+GGG | - | chr4_1:9586263-9586282 | None:intergenic | 50.0% | |
| TGAGGCGTAGAGGGAAGAAA+TGG | - | chr4_1:9586264-9586283 | None:intergenic | 50.0% | |
| !! | AAGTCCGCTTTTCACAGCTC+TGG | + | chr4_1:9587401-9587420 | Msa0534230:intron | 50.0% |
| !! | AGTCCGCTTTTCACAGCTCT+GGG | + | chr4_1:9587402-9587421 | Msa0534230:intron | 50.0% |
| CCCGTTACCATCCCTCTAAA+AGG | + | chr4_1:9587873-9587892 | Msa0534230:intron | 50.0% | |
| !! | GTCAAGGCCTTTTAGAGGGA+TGG | - | chr4_1:9587883-9587902 | None:intergenic | 50.0% |
| GATGAAAGAGAGGGGGTCGA+CGG | + | chr4_1:9577409-9577428 | Msa0534230:exon | 55.0% | |
| !! | GTGCAGATCGGAGTGTTGGA+CGG | - | chr4_1:9577481-9577500 | None:intergenic | 55.0% |
| ATCGGTGCAGATCGGAGTGT+TGG | - | chr4_1:9577485-9577504 | None:intergenic | 55.0% | |
| CGTACAGAACAGAGGGAGAG+GGG | - | chr4_1:9577541-9577560 | None:intergenic | 55.0% | |
| GCGTACAGAACAGAGGGAGA+GGG | - | chr4_1:9577542-9577561 | None:intergenic | 55.0% | |
| GGAAAATTGGTAGACGGCGG+TGG | - | chr4_1:9577591-9577610 | None:intergenic | 55.0% | |
| GCCGGAAAATTGGTAGACGG+CGG | - | chr4_1:9577594-9577613 | None:intergenic | 55.0% | |
| CCGGCCGGAAAATTGGTAGA+CGG | - | chr4_1:9577597-9577616 | None:intergenic | 55.0% | |
| ! | CCGTCTACCAATTTTCCGGC+CGG | + | chr4_1:9577594-9577613 | Msa0534230:intron | 55.0% |
| AACAACAAATCGGAGCCGGC+CGG | - | chr4_1:9577612-9577631 | None:intergenic | 55.0% | |
| ! | ATGATCTTGGTGGCCGTCCT+AGG | + | chr4_1:9580470-9580489 | Msa0534230:CDS | 55.0% |
| CCTGCACAATGCTCCTAGGA+CGG | - | chr4_1:9580486-9580505 | None:intergenic | 55.0% | |
| !! | GTGGCAGGGGCATGTTTTGT+CGG | + | chr4_1:9584325-9584344 | Msa0534230:intron | 55.0% |
| !! | TGGCAGGGGCATGTTTTGTC+GGG | + | chr4_1:9584326-9584345 | Msa0534230:intron | 55.0% |
| GGCTTGAGACCTTACAGCAG+AGG | - | chr4_1:9585513-9585532 | None:intergenic | 55.0% | |
| !! | TGAGGCAGGGGTATTGTCGT+GGG | - | chr4_1:9586129-9586148 | None:intergenic | 55.0% |
| CAATACCCCTGCCTCACTAC+CGG | + | chr4_1:9586133-9586152 | Msa0534230:intron | 55.0% | |
| TAGAGGTTGTGCGCGAGTTC+CGG | - | chr4_1:9586155-9586174 | None:intergenic | 55.0% | |
| TTTCTGCGCAGCTGTGCTAG+AGG | - | chr4_1:9586172-9586191 | None:intergenic | 55.0% | |
| GGAAGAAATGGGAGAGCCAG+AGG | - | chr4_1:9586252-9586271 | None:intergenic | 55.0% | |
| GCATGGAACAAGTGTGGCTG+AGG | + | chr4_1:9587050-9587069 | Msa0534230:intron | 55.0% | |
| GGAACAAGTGTGGCTGAGGT+TGG | + | chr4_1:9587054-9587073 | Msa0534230:intron | 55.0% | |
| CGCGTACAGAACAGAGGGAG+AGG | - | chr4_1:9577543-9577562 | None:intergenic | 60.0% | |
| ! | AGACGGCGGTGGTGAGTTGA+AGG | - | chr4_1:9577580-9577599 | None:intergenic | 60.0% |
| ATCGGAGCCGGCCGGAAAAT+TGG | - | chr4_1:9577604-9577623 | None:intergenic | 60.0% | |
| !! | CCGTCCTAGGAGCATTGTGC+AGG | + | chr4_1:9580483-9580502 | Msa0534230:CDS | 60.0% |
| ! | GCAGCAGGAAGAGCGTGAGA+AGG | + | chr4_1:9583402-9583421 | Msa0534230:intron | 60.0% |
| !! | GTTGGTGCTGTTGCAGGAGC+TGG | + | chr4_1:9584301-9584320 | Msa0534230:intron | 60.0% |
| TGCTGTTGCAGGAGCTGGTG+TGG | + | chr4_1:9584306-9584325 | Msa0534230:intron | 60.0% | |
| TTGCAGGAGCTGGTGTGGCA+GGG | + | chr4_1:9584311-9584330 | Msa0534230:intron | 60.0% | |
| !! | GGCAGGGGCATGTTTTGTCG+GGG | + | chr4_1:9584327-9584346 | Msa0534230:intron | 60.0% |
| TTGTCGTGGGATCCGAGCTG+TGG | - | chr4_1:9586116-9586135 | None:intergenic | 60.0% | |
| !! | GTGAGGCAGGGGTATTGTCG+TGG | - | chr4_1:9586130-9586149 | None:intergenic | 60.0% |
| GAGTTCCGGTAGTGAGGCAG+GGG | - | chr4_1:9586141-9586160 | None:intergenic | 60.0% | |
| CGAGTTCCGGTAGTGAGGCA+GGG | - | chr4_1:9586142-9586161 | None:intergenic | 60.0% | |
| AAGAGAGGGGGTCGACGGAG+AGG | + | chr4_1:9577414-9577433 | Msa0534230:CDS | 65.0% | |
| GTGTTGGACGGCGAGGTCGA+CGG | - | chr4_1:9577469-9577488 | None:intergenic | 65.0% | |
| !! | GATCGGAGTGTTGGACGGCG+AGG | - | chr4_1:9577476-9577495 | None:intergenic | 65.0% |
| ! | CGGCGGTGGTGAGTTGAAGG+AGG | - | chr4_1:9577577-9577596 | None:intergenic | 65.0% |
| GGGGAGCTACAGCTCCGTGT+CGG | + | chr4_1:9582175-9582194 | Msa0534230:intron | 65.0% | |
| GTTGCAGGAGCTGGTGTGGC+AGG | + | chr4_1:9584310-9584329 | Msa0534230:intron | 65.0% | |
| TGCAGGAGCTGGTGTGGCAG+GGG | + | chr4_1:9584312-9584331 | Msa0534230:intron | 65.0% | |
| !! | GGGGCTTTAGGTGCTGCAGC+AGG | + | chr4_1:9584346-9584365 | Msa0534230:intron | 65.0% |
| GCGAGTTCCGGTAGTGAGGC+AGG | - | chr4_1:9586143-9586162 | None:intergenic | 65.0% | |
| GTGCGCGAGTTCCGGTAGTG+AGG | - | chr4_1:9586147-9586166 | None:intergenic | 65.0% | |
| AGGGGGTCGACGGAGAGGAG+AGG | + | chr4_1:9577419-9577438 | Msa0534230:CDS | 70.0% | |
| GGGGGTCGACGGAGAGGAGA+GGG | + | chr4_1:9577420-9577439 | Msa0534230:CDS | 70.0% | |
| TTGGACGGCGAGGTCGACGG+CGG | - | chr4_1:9577466-9577485 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 9577382 | 9588180 | 9577382 | ID=Msa0534230;Name=Msa0534230 |
| chr4_1 | mRNA | 9577382 | 9588180 | 9577382 | ID=Msa0534230-mRNA-1;Parent=Msa0534230;Name=Msa0534230-mRNA-1;_AED=0.46;_eAED=0.46;_QI=28|0.41|0.30|0.61|0.5|0.38|13|0|163 |
| chr4_1 | exon | 9577382 | 9577515 | 9577382 | ID=Msa0534230-mRNA-1:exon:3125;Parent=Msa0534230-mRNA-1 |
| chr4_1 | exon | 9577963 | 9577988 | 9577963 | ID=Msa0534230-mRNA-1:exon:3126;Parent=Msa0534230-mRNA-1 |
| chr4_1 | exon | 9579407 | 9579428 | 9579407 | ID=Msa0534230-mRNA-1:exon:3127;Parent=Msa0534230-mRNA-1 |
| chr4_1 | exon | 9579604 | 9579630 | 9579604 | ID=Msa0534230-mRNA-1:exon:3128;Parent=Msa0534230-mRNA-1 |
| chr4_1 | exon | 9580443 | 9580504 | 9580443 | ID=Msa0534230-mRNA-1:exon:3129;Parent=Msa0534230-mRNA-1 |
| chr4_1 | exon | 9580793 | 9580834 | 9580793 | ID=Msa0534230-mRNA-1:exon:3130;Parent=Msa0534230-mRNA-1 |
| chr4_1 | exon | 9581395 | 9581405 | 9581395 | ID=Msa0534230-mRNA-1:exon:3131;Parent=Msa0534230-mRNA-1 |
| chr4_1 | exon | 9581500 | 9581648 | 9581500 | ID=Msa0534230-mRNA-1:exon:3132;Parent=Msa0534230-mRNA-1 |
| chr4_1 | exon | 9583959 | 9583966 | 9583959 | ID=Msa0534230-mRNA-1:exon:3133;Parent=Msa0534230-mRNA-1 |
| chr4_1 | exon | 9584317 | 9584322 | 9584317 | ID=Msa0534230-mRNA-1:exon:3134;Parent=Msa0534230-mRNA-1 |
| chr4_1 | exon | 9586408 | 9586413 | 9586408 | ID=Msa0534230-mRNA-1:exon:3135;Parent=Msa0534230-mRNA-1 |
| chr4_1 | exon | 9587721 | 9587726 | 9587721 | ID=Msa0534230-mRNA-1:exon:3136;Parent=Msa0534230-mRNA-1 |
| chr4_1 | exon | 9588160 | 9588180 | 9588160 | ID=Msa0534230-mRNA-1:exon:3137;Parent=Msa0534230-mRNA-1 |
| chr4_1 | five_prime_UTR | 9577382 | 9577409 | 9577382 | ID=Msa0534230-mRNA-1:five_prime_utr;Parent=Msa0534230-mRNA-1 |
| chr4_1 | CDS | 9577410 | 9577515 | 9577410 | ID=Msa0534230-mRNA-1:cds;Parent=Msa0534230-mRNA-1 |
| chr4_1 | CDS | 9577963 | 9577988 | 9577963 | ID=Msa0534230-mRNA-1:cds;Parent=Msa0534230-mRNA-1 |
| chr4_1 | CDS | 9579407 | 9579428 | 9579407 | ID=Msa0534230-mRNA-1:cds;Parent=Msa0534230-mRNA-1 |
| chr4_1 | CDS | 9579604 | 9579630 | 9579604 | ID=Msa0534230-mRNA-1:cds;Parent=Msa0534230-mRNA-1 |
| chr4_1 | CDS | 9580443 | 9580504 | 9580443 | ID=Msa0534230-mRNA-1:cds;Parent=Msa0534230-mRNA-1 |
| chr4_1 | CDS | 9580793 | 9580834 | 9580793 | ID=Msa0534230-mRNA-1:cds;Parent=Msa0534230-mRNA-1 |
| chr4_1 | CDS | 9581395 | 9581405 | 9581395 | ID=Msa0534230-mRNA-1:cds;Parent=Msa0534230-mRNA-1 |
| chr4_1 | CDS | 9581500 | 9581648 | 9581500 | ID=Msa0534230-mRNA-1:cds;Parent=Msa0534230-mRNA-1 |
| chr4_1 | CDS | 9583959 | 9583966 | 9583959 | ID=Msa0534230-mRNA-1:cds;Parent=Msa0534230-mRNA-1 |
| chr4_1 | CDS | 9584317 | 9584322 | 9584317 | ID=Msa0534230-mRNA-1:cds;Parent=Msa0534230-mRNA-1 |
| chr4_1 | CDS | 9586408 | 9586413 | 9586408 | ID=Msa0534230-mRNA-1:cds;Parent=Msa0534230-mRNA-1 |
| chr4_1 | CDS | 9587721 | 9587726 | 9587721 | ID=Msa0534230-mRNA-1:cds;Parent=Msa0534230-mRNA-1 |
| chr4_1 | CDS | 9588160 | 9588180 | 9588160 | ID=Msa0534230-mRNA-1:cds;Parent=Msa0534230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
